BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
(361 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|163746449|ref|ZP_02153807.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
gi|161380334|gb|EDQ04745.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
Length = 365
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 82/366 (22%), Positives = 162/366 (44%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + + LV ++D + + + + + + +P I
Sbjct: 2 ILHFYFARRFFTSFMVITAVLAALVMLVDGVDQARRFAD-DDVGWDQVLGMTLLNMPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SE+V++RA G S + L VV ++++G V V+NPI
Sbjct: 61 NMILPLIMILATVALFIGLARSSEMVVTRAAGRSALRALVAPVVVALIIGTLAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L Q+++ NG SD W++ + I A + + + + T
Sbjct: 121 VAATSERSEQLTQKYRSNGSSALSVSDEGLWLRQGTEEGQSVIRAWRTNSDASVLYNVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMD 235
I+ D + I R +A+ A + +L + + + T+ + ++
Sbjct: 181 ISYDAEKGPIRRIEAESAQLSGGDWQLTGAKIWPLEAGVNAEGAAEEHETLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + A+ S YE+ + + ++ F + E + P LVAM L+A++ +
Sbjct: 241 RIRESIARVAAVSIYELPEFIRQLEQAG-FSTRQHEVWLQAELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V I GF LY I + + G++G + AA P + I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASILLGFGLYFIRSFAQILGENGQIPVTLAAWAPPVAAIFLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|89070357|ref|ZP_01157664.1| putative permease [Oceanicola granulosus HTCC2516]
gi|89044004|gb|EAR50179.1| putative permease [Oceanicola granulosus HTCC2516]
Length = 366
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 80/366 (21%), Positives = 148/366 (40%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + YL + L +L+ +DL E N++ + S L P +
Sbjct: 2 ILHRYFARRYLTSFLTVSGLFFVLLGAMDLVEQANEVSDEAAARWSDVLALTLLNAPASL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F L R+SELV++RA G S L V+ L+G + V+NP+
Sbjct: 62 YEILPLLVILSTIALFLGLARSSELVVTRAAGRSALHALVAPVLVVALIGAVALAVLNPL 121
Query: 124 ATSGEKIGIDLIQ--QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + + + W++ P+ I A + + T
Sbjct: 122 VAATSKEYEARVSALEDRGASIVSVDAGGLWLRQGGPEGQSVIRAARANTDGTELSGVTF 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMD 235
IT ++ + R DA A + +L + + + + + +
Sbjct: 182 ITFAEEGRPSRRIDARRARLEAGVWRLVEAKSWPLGDAGVPEAAAEEHDVYEVATSLTAA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +S +E+ + + + F R + + P LVAM LI A+ +
Sbjct: 242 QIRDSFGAPSSIPIWELPRFIDRLQTAG-FSARRHQVWLQTELAKPAFLVAMLLIGAAFT 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + ++ I F LY + + G++G + + AA P + I+ S+ +L
Sbjct: 301 MRHQRGGRTGLMALVAILLSFGLYFLRNFAQILGENGQIPVLLAAWAPPLAGIAASVALL 360
Query: 356 LQKEDG 361
L KEDG
Sbjct: 361 LHKEDG 366
>gi|260427738|ref|ZP_05781717.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
gi|260422230|gb|EEX15481.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
Length = 364
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 165/366 (45%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + L I V ++DL E + G + S ++ + A R+P +
Sbjct: 2 ILHRYFARRFFWMFMSILSVFAIFVGLVDLVEQIRKFG--GDISFAQKVQITALRLPEGM 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ +F L R+SELV+ RA G S L ++ ++ + TV ++NP+
Sbjct: 60 YEILPLVMILATAALFLMLARSSELVVVRAAGRSGLTALMGPMMVALAISGVTVAMLNPL 119
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL + ++++G W++ + I A + P+ + D +
Sbjct: 120 VAATSKRASDLAESYENDGASVISIGKEGLWLRQGSSDGQAVIRAARANPDATVLYDVSF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKMD 235
+ + I R +A A + + L+ + + + + +
Sbjct: 180 LQYAEDGGPIRRVEAAEAALEDGAWALRDAKVWPLGTRANPEAAAERHDRLRIASDLTQN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ + +++ ++ ++ F R E F + P+ LVAM L+AA +
Sbjct: 240 DIRDRFGKPSAVAIWDLPDFINGLEQAG-FSARRHEVWFQMELARPIFLVAMVLVAAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V + GF LY + + G++G L P+ AA +P + ++ L++ ++
Sbjct: 299 MRPARLGRTGLYVLAAVLLGFGLYYVRNFAQIMGENGQLPPLFAAWVPPVASLMLALGLV 358
Query: 356 LQKEDG 361
LQ EDG
Sbjct: 359 LQMEDG 364
>gi|220925666|ref|YP_002500968.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
gi|219950273|gb|ACL60665.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
Length = 362
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 88/358 (24%), Positives = 153/358 (42%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY L+ L LV+ +D E+ + GE A L+ R P I
Sbjct: 6 TLGRYIAGRLLRMIAGVFLTVFALVYTLDFVELMRRAGETQGIGALTVARLSLLRTPSIA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+QI+PF L + L+R ELV++RA GIS WQ L P V ++ +G V NP+
Sbjct: 66 EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVFVALAVGALMVGAYNPM 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++ ++ + ++ S W++ + + A+ + +
Sbjct: 126 AAALKQHSTEIEARIFSRSNRGGSGKDLWIRQRSVDGQAIVRAETAIEGTTTLAGVSVFA 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + + +A A +++ +L+ P ++ + + ++
Sbjct: 186 FDDQGTFTQQIEARQATLHDGYWELQDARVLAKDSQPESYDTYLVASNLVPSQVRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ ++ S ++ R Q L+ P++ VAM L+AASVSL F R
Sbjct: 246 PDSVPFWQLGDTIARSERAG-LDATRYRLQRAVLLARPMLFVAMVLVAASVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 305 IGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|170743204|ref|YP_001771859.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
gi|168197478|gb|ACA19425.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
Length = 362
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY +L+ L LV+ +D E+ + GE P S A L+ R P +
Sbjct: 6 TLGRYIAARFLRMIAGVFLTVFALVYTLDFVELMRRAGEAPGASALTVAHLSLLRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+QI+PF L + L+R ELV++RA GIS WQ L P V+ ++ +G V NP+
Sbjct: 66 EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVLVAVGIGALMVGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A S ++ + + K W++ + + A + T T
Sbjct: 126 AASLKQRSTQVEARIFARSTKGGLSNDLWIRQRSVDGQAIVRASTAIEGTTSLAGVTIFT 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + + +A A +++ +L+ P ++ + + ++
Sbjct: 186 FDAQGAFGQQIEARRATLHDGYWELQDARVLTQDSGPESYDTYLVASNLAPSQVRQRVTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ S ++ R Q L+ P++ VAM L+AASVSL F R
Sbjct: 246 PDSVPFWQLSETIARSERAG-LDAARYRLQRAVLLARPMLFVAMVLVAASVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 305 IGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|56697305|ref|YP_167671.1| YjgP/YjgQ family permease [Ruegeria pomeroyi DSS-3]
gi|56679042|gb|AAV95708.1| permease, YjgP/YjgQ family [Ruegeria pomeroyi DSS-3]
Length = 365
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 85/366 (23%), Positives = 158/366 (43%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + ++++ L L + LV +IDL E + E S+ + L P I
Sbjct: 2 ILDRYFARRFIQSFLVIGLVFLGLVLLIDLIEQLRRF-EGFEVSMGQLVGLTLLNAPAAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ IV+F L R+SELV++RAIG S + L V+ ++++G+ V +NPI
Sbjct: 61 SEILPLLMILSTIVLFVGLARSSELVVTRAIGRSGIRALVGPVLVALVIGLLAVTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L +++ G SD W++ + I A + D T
Sbjct: 121 VAATAVRYQTLADTYRNGGPSVLSLSDEGLWLRQGDAGGQSVIHATGFGGDGVTLFDVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKMD 235
++ R A+ A + + K L+K + + + + + +
Sbjct: 181 LSYAPDGSAQRRTIAESAQLQDGKWLLQKAKVWPLKVGQNPEANAVYHDRIEMPTSLTQE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + S Y++ + + ++ F R + + PL LV+M L+ A+ +
Sbjct: 241 RIRDSLGRRETVSIYDLPQTIEQLQQAG-FSTKRHKVWLQVELARPLFLVSMVLVGAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + G++G + AA P + I L+ +L
Sbjct: 300 MRHTRFGGTGLAVLSAVLLGFTLYFTRNFAQILGENGQIPVALAAWAPPVAAIMLTFGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|77463458|ref|YP_352962.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221639316|ref|YP_002525578.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
gi|332558335|ref|ZP_08412657.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
gi|77387876|gb|ABA79061.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221160097|gb|ACM01077.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides KD131]
gi|332276047|gb|EGJ21362.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 364
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 148/365 (40%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP +
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SELV+ RA G S + L +V ++ LG V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDG 236
+T D + + R A+ A + +L + + + + + +G
Sbjct: 181 LTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARAGLPGNLRVTSELTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + +P L AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMEFALPATLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + GF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|146277167|ref|YP_001167326.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555408|gb|ABP70021.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
Length = 364
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 151/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP I
Sbjct: 2 ILSRYIARRFLRMVFIVFLVFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L RTSELV+ RA G S + L ++ ++ +G V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARTSELVVVRAAGRSGLRFLVAPMIVALAIGAAAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S+ W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAASRLARGEASILSISEEGLWLRQGGAEGQTVIHAARSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+T D R A+ A + +L + + + + + + +G
Sbjct: 181 LTFDGNGLPRSRVAAEQAALETGYWQLSGAKSWDLTLANPEASANLEGNIRVPSDLTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + + +P ML AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMELALPFMLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + SGF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLSGFGLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|163735796|ref|ZP_02143225.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
gi|161390882|gb|EDQ15222.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
Length = 365
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + + L+ ++DL + + + S + L P I
Sbjct: 2 ILHLYFARRFASWLMIAFIALFALIALVDLVDQTRRFADR-GVSAAGIFELVILNTPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P I L+ + F +L R+SEL+ +RA G S L V I+LG +NPI
Sbjct: 61 SQILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALIAPVGVVIVLGTLATTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +L Q ++ G S W++ + I A + P+ + D T
Sbjct: 121 VAATSKKYNELSQTYRTGGGSTFSISTEGLWLRQGTDDGQMVIRAWRSNPDASVLFDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
+ + + R AD A + + L+ V ++ R + S T+ + ++
Sbjct: 181 LAYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ S +E+ + N++ F + + + PL LVAM LIA++ +
Sbjct: 241 RIRESFGHPSTISIWEMNDFIKQLNQAG-FSSLQHRVWLQSELARPLFLVAMVLIASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + + G++G L AA P I ++ L+ L
Sbjct: 300 MRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAFGPL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|126462313|ref|YP_001043427.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103977|gb|ABN76655.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
Length = 364
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 148/365 (40%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP +
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SELV+ RA G S + L +V ++ LG V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDG 236
+T D + + R A+ A + +L + + + + + +G
Sbjct: 181 LTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARASLPGNLRVTSELTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + +P L AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMEFALPATLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + GF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
Length = 365
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 88/360 (24%), Positives = 165/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +L L + +L+ ++D E+ + L + S A + RVP ++
Sbjct: 7 TLGRYFAGRFLVAALGVFVSIFLLLVLVDYIEMVRRTSGLASASALVVAETSLFRVPQLL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I+LG V NP+
Sbjct: 67 EKLTPFCVLIGAMTCYLALSRQLELVVARAAGVSAWQFISPALACAIVLGALATTVYNPL 126
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + G + W+ I A + + T
Sbjct: 127 SANLRELSKRMEAELFGGVSGGGLQDASGFWINQVTDDGQAIINAARSEQQGVRLTGLTV 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ R +A A + + + K V + P+++ + L+ + Q
Sbjct: 187 FRFNPHSRFEERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLSTSLTPAQVQNSF 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ LI P +L AM ++AASVSL F R
Sbjct: 247 STPETVSFWQLPGYIKSSESSGFATAG-YRLQYHKLIAQPFLLAAMVMLAASVSLRFFRF 305
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +EDG
Sbjct: 306 GGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLYQEDG 365
>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
Length = 365
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 89/360 (24%), Positives = 163/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ L +L+ ++D E+ + L + S A + RVP ++
Sbjct: 7 TLGRYFAGRFMVAALGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQLL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I LG+F V NP+
Sbjct: 67 EKLTPFCVLIGAMTCYLALSRKLELVVARAAGVSAWQFISPTLACAIALGVFATTVYNPL 126
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+++ ++ + + G W+ I A + T
Sbjct: 127 SSNLRELSKRMEAEMFGGASGGGLHDASGFWINQVTDDGQAIINAALSEQQGVRLTGLTV 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D ++ R +A A + + + K V + P+++ + L + Q
Sbjct: 187 FRFDPDSRFRERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLPTSLTPAQVQNSF 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ LI P +L AM ++AASVSL F R
Sbjct: 247 STPETVSFWQLPDYIRSSESSGFATAG-YRLQYHKLIAQPFLLAAMVMLAASVSLRFFRF 305
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +EDG
Sbjct: 306 GGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLHQEDG 365
>gi|90419501|ref|ZP_01227411.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336438|gb|EAS50179.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 360
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 109/358 (30%), Positives = 181/358 (50%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF+ Y+ + L LL L+++IDL E+ + + A+ + RVP I
Sbjct: 5 TLNRYFFRLYVVSFLSTLLTVFALIYLIDLIEVSRR-SRFEDLGFGATALFSLLRVPSFI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q PFI L +I LNR ELV++RA G+SIWQ+L PFVVGS L+GI V NP+
Sbjct: 64 GQAFPFIVLFSSIYTLLTLNRRLELVVARASGVSIWQILLPFVVGSFLIGIVATFVYNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + D+ GD SD +PW++ +GAK + + D T+
Sbjct: 124 TAYTKTLSEDMQTTMTAGGDVSSSDRVPWLRQEGDGIQSILGAKTVARSGTVLGDITAFV 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + + R DA A++ ++ L+K + G P L ++ + ++
Sbjct: 184 MNDEGIVKERIDAARAVLNDEYWLLEKPRVTRVGYRPEFPQEYKLPTSLRPEYVEQRIAD 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S +++ K+ + F+ Q++ L+ P + +AMTL+AA+V+ FSR+ Q
Sbjct: 244 PEAISIWQLGSKIDVAASLG-FNTDAFRMQYHTLVAQPALFIAMTLLAATVATRFSRTGQ 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+A G+ +GF+LY + + K+ G + ++ PV AA PV+ + ILL +EDG
Sbjct: 303 SGRTIAGGVMAGFVLYVVTFLAKALGSNDVVPPVMAAWFPVLAAGLSGVTILLHQEDG 360
>gi|258542096|ref|YP_003187529.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633174|dbj|BAH99149.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636231|dbj|BAI02200.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639286|dbj|BAI05248.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642340|dbj|BAI08295.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645395|dbj|BAI11343.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648450|dbj|BAI14391.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651503|dbj|BAI17437.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654494|dbj|BAI20421.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 370
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 6 TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P+
Sbjct: 66 TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGAVFTTLISPV 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--------I 175
++S + +L QQ+ G S + + +L
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + +D ++K++ R +A + K L + + L + ++
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S ++S F + R F L+ +P++ M L+AA S
Sbjct: 246 RVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALPMLAGTMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA P + + L++ +L
Sbjct: 305 MRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAWAPTLAGLCLAVSLL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|158425948|ref|YP_001527240.1| permease precursor [Azorhizobium caulinodans ORS 571]
gi|158332837|dbj|BAF90322.1| permease precursor [Azorhizobium caulinodans ORS 571]
Length = 363
Score = 176 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 89/360 (24%), Positives = 161/360 (44%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + + + + L+ ++D E+ + + S A+L R P
Sbjct: 5 TLGFYFARRFFASVTMIFFSCVGLIMLVDFLEMARRTADRDTVSAVTVALLTIYRTPAFT 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L + F L+R ELV++RA+G+S+WQ +P ++ + L+G+F V NP+
Sbjct: 65 EQLLPFAVLFGGMATFVTLSRKLELVVARAVGLSVWQFTSPALLVAFLIGVFATCVFNPV 124
Query: 124 ATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + + +G + W++ + I A T
Sbjct: 125 SADFKERANRMEAEIFNTASGVFTQGTSGFWIRQQSVDGQAIIQAAASQQGGRQLTGVTV 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D+ K+ R +A AI+ + +K+ G + L + Q+
Sbjct: 185 FEFDRNGKLTDRVEAKSAILGDGYWTMKEARVLVPGSDQQTFETYLLATKLDPKQIQESL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ +S + +S F R Q L+ P +LVAM LIAA V L R
Sbjct: 245 VSPETVSFWQLPDAISNAEQSG-FGAARYRLQLQSLLARPFLLVAMVLIAAVVGLRVFRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF+LY + + G +G++ P+AAA P + I + +LILL +EDG
Sbjct: 304 GGVGQTILGGVLAGFLLYLGTKLAEDLGDAGVVHPIAAAWFPALAGIFMGVLILLHREDG 363
>gi|329114151|ref|ZP_08242913.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
gi|326696227|gb|EGE47906.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
Length = 370
Score = 176 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 166/366 (45%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 6 TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P+
Sbjct: 66 TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGALFTTLISPV 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--------I 175
++S + +L QQ+ G S + + +L
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + +D ++K++ R +A + K L + + L + ++
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S ++S F + R F L+ +P++ M L+AA S
Sbjct: 246 RVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALPMLAGTMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA P + + L++ +L
Sbjct: 305 MRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAWAPTLAGLCLAVSLL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|110680307|ref|YP_683314.1| YjgP/YjgQ family permease [Roseobacter denitrificans OCh 114]
gi|109456423|gb|ABG32628.1| permease YjgP/YjgQ family, putative [Roseobacter denitrificans OCh
114]
Length = 365
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + L + L+ ++DL + + + S + L P I
Sbjct: 2 ILHLYFARRFASWLLIAFIALSALIALVDLVDQTRRFADR-GVSATGIFELVILNTPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P I L+ + F +L R+SEL+ +RA G S L V ILLG +NPI
Sbjct: 61 SQILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALVAPVSVVILLGTLATTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +L Q ++ G S W++ + + I A + P+ + D T
Sbjct: 121 VAATSKKYNELSQIYRTGGVSTLSISTEGLWLRQATDDGQMVIRAWRSNPDASVLFDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
+ + + R AD A + + L+ V ++ R + S T+ + ++
Sbjct: 181 LAYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ S +E+ + N++ F + + + PL LVAM LIA++ +
Sbjct: 241 RIRESFGHPSTISIWEMTDFIKQLNQAG-FSSLQHRVWLQSELARPLFLVAMVLIASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + + G++G L AA P I ++ L+ L
Sbjct: 300 MRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAFGPL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
Length = 361
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP ++
Sbjct: 5 TLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQLL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP+
Sbjct: 64 ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + D WM +P I A + + + T
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + R +A A++ LK V Y P+D+++ L + + +
Sbjct: 184 RFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTLELPTSLTLAQVRNSFA 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 244 TPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSLRFFRFG 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 GVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|259419234|ref|ZP_05743151.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345456|gb|EEW57310.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 368
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 84/369 (22%), Positives = 152/369 (41%), Gaps = 13/369 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y+ K + + L M LV +IDL+E + + + + L P +
Sbjct: 2 ILDLYYAKRFFQWFLVIAAVLMSLVMLIDLSEQFRRF-DGQDLQFGQLLELTLLNTPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV++ + R+SELV++RA+G S + L P VV +++LG V +NPI
Sbjct: 61 NEFLPLIMILTTIVLYVGMARSSELVVTRALGRSGIRALLPPVVVALILGGLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
+ L + ++ G S W++ I A + D
Sbjct: 121 VAATTNRFDSLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLFLYD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPI 232
+ +T R A A + + L+ +Q R + L +
Sbjct: 181 VSILTYTPDGGPTRRTIAAEARLDGEDWVLRDAKVWQLIVGVNPERSAKSYDELRLPTTL 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S YE+ + + +++ F R + + PL LVAM L+ A
Sbjct: 241 TNERIRDTLGYAEGISIYELPQTIKSLSEAG-FSTTRFQVWLQVELARPLFLVAMVLVGA 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ +R I V + GF LY + + G++G + + AA P + +I L++
Sbjct: 300 AFTMRHTRLGGTGIAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLTM 359
Query: 353 LILLQKEDG 361
+LL EDG
Sbjct: 360 GLLLHAEDG 368
>gi|114704780|ref|ZP_01437688.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
gi|114539565|gb|EAU42685.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
Length = 360
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 100/358 (27%), Positives = 176/358 (49%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF+ YL ++ LV +IDL E+ + L + S+ + +A RVP +
Sbjct: 5 TLNRYFFRLYLVNFFSTVVAVSALVLLIDLVELGRR-SVLADQSLGVLLLFSALRVPAFM 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q PFI L +I +LNR ELV++RA G+S WQ+L PF+ GS+ LG+ NP+
Sbjct: 64 EQAFPFIILFSSIFTLISLNRRLELVVARAAGVSAWQILMPFIAGSLFLGLLATFAYNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + + PW++ + +GA ++ + + ++
Sbjct: 124 SAYTKAQAANIESAAEGREVASSALQTPWLRQNADGVRSIMGATQVAENGRVLSNVSAFV 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + R DA A + N + L + + G P D L ++ + ++
Sbjct: 184 MADDGSVETRIDAPRAELGNQEWILLRPRVTRIGYTPRDLVEYRLPTSLRPEYIEQRLAD 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S +E+ K+ + F++ Q++ LI P + VAMTL+AA+V+ FSR+ Q
Sbjct: 244 PETISIWELGSKIDVAASLG-FNSMAFSMQYHTLIAQPALFVAMTLLAATVATRFSRTGQ 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
P I G+ +GF+LY + + K+ G + ++ P+ AA PV+ + ILL +EDG
Sbjct: 303 PGRIFVGGVLAGFVLYVVTFLAKALGSNDVVPPIVAAWFPVLAAGLFGVTILLHQEDG 360
>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
Length = 365
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ L +L+ ++D E+ + L + S A + RVP ++
Sbjct: 7 TLGRYFASRFVVAALGVFASIFLLLVLVDYIEMVRRTSGLASASAIMVAETSLFRVPQLL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++ PF L+ + + L+R ELV++RA GIS WQ ++P + +++LG+ NP+
Sbjct: 67 EKLTPFCVLIGAMTCYLALSRRLELVVARAAGISAWQFISPALACALVLGVLATTAYNPM 126
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + G + W+ I A + + T
Sbjct: 127 SANLRELSKKMEAELFGSVSGGGLQEASGFWINQVTDDGQAIINAARSEQQGVRLTGLTV 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R +A A + + + K V + P+++ + L + +
Sbjct: 187 FRFDPDSTFRERIEAREATLEDGRWLFKGVRRFTLDSPPVEQETFVLPTSLTAAQVRNSF 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ LI P +L AM ++AASVSL F R
Sbjct: 247 STPETVSFWQLPGYIRSSESSGFATAG-YRLQYHKLIAQPFLLAAMVMLAASVSLRFFRF 305
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +EDG
Sbjct: 306 GGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLAGFLVLLHQEDG 365
>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
Length = 362
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 86/359 (23%), Positives = 164/359 (45%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ L G +L+ +D ++ + G P+ S + RVP ++
Sbjct: 5 TLSRYFAGRFVTAALAVFAGLFVLLVFVDYIDLLRRAGGRPSISALLIVQTSVYRVPQLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R ELV++RA GIS WQ + P + ++ LG+F +V NP+
Sbjct: 65 ERLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSALALGVFATVVFNPM 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + + + D W+ + I A + + + +
Sbjct: 125 SANMQERAKQMEAEMFGDSSGSLQDASGFWINQVTTEGQAIINAARSQQQGALLTGLSVF 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ R +A A + + K + Y P+D++ L + + +
Sbjct: 185 RFEPDFSFSERIEAREATLEPGFWRFKNLRRYTLDGPPVDQDVFLLPTTLTLAQVRNSFS 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ SF+++ + S S QF+ L+ P +L AM ++AASVSL F R
Sbjct: 245 TPETVSFWQLPGYIRSSESSGFATAG-YRLQFHKLLARPFLLAAMVMLAASVSLRFFRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 304 GVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGSLAGFLALLHQEDG 362
>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
Length = 362
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP ++
Sbjct: 6 TLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP+
Sbjct: 65 ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + D WM +P I A + + + T
Sbjct: 125 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + R +A A++ LK V Y P+D+++ L + + +
Sbjct: 185 RFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTLELPTSLTLAQVRNSFA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 245 TPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSLRFFRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 304 GVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 362
>gi|126728788|ref|ZP_01744603.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
gi|126710718|gb|EBA09769.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
Length = 364
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 153/366 (41%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L L + ++DL + Q+G+ S L ++P +
Sbjct: 2 TLHFYYARRFLSLFLGIFAVFALFQGLLDLIDELRQLGD--EVSFGETLQLVILKLPEGL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F L R+SELV +RA G S L ++L+G V ++NPI
Sbjct: 60 YEILPLVMILATVAMFIGLARSSELVATRAAGRSGLTALMAPATVALLIGAIIVAMMNPI 119
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL + ++ W++ I A + PE D +
Sbjct: 120 VAATSKRYADLRETYESGNTSAVSFGPEGLWLRQGGEDGQSVIRAARANPEATELYDVSI 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKMD 235
+T R A+ A + + L + + L + +
Sbjct: 180 VTYAPDGGPAMRIQAESAALSDGAWHLTDAKAWPLTPGLNPELGARLHVEYELPSTLTRE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ + +++ + ++ +S F R + + PL LVAM L+ A+ +
Sbjct: 240 SIRDRFGRPSAVAIWDLPQFIAGLEESG-FSARRHIVWYNMELARPLFLVAMVLVGAAFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R + + V + GF LY + + + G++G L PV AA +P ++ L++ ++
Sbjct: 299 MQPTRLARTGLAVLSAVLLGFGLYYVRSFAQIMGENGQLAPVVAAWVPPTASVLLALGLV 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHMEDG 364
>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
Length = 360
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 141/360 (39%), Positives = 213/360 (59%), Gaps = 2/360 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P
Sbjct: 3 FNTLGRYFFKRYARTTFWFLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPT 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG++L G+ V+VIN
Sbjct: 63 ILQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVVVIN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P+A G K L +W + ++ IPW++ D IGA+ + + T
Sbjct: 123 PLAAWGTKKAEALEAEW-GSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTV 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I D + I R+DA A + + L VVE + GR+P + L +K D Q+
Sbjct: 182 IHFDPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLKPDFVQERL 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S F+++ +K+ + F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR
Sbjct: 242 AKADSIQFFDLPRKIEVARSFG-FSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSRF 300
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
NQ R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 301 NQSRSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 167/359 (46%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP ++
Sbjct: 5 TLGRYFARRFVVASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQLL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GI + NP+
Sbjct: 64 ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATTIFNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + D WM NP I A + + + T
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVNPDGQAIINAARSQQQGAVLTGITIF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D + R +A A++ LK V Y P D+++ L + + +
Sbjct: 184 RFDPNFQFRDRIEAREAVLEPGHWLLKSVRRYTLDSAPTDQDTMELPTSLTLAQVRNSFA 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 244 TPESVSFWQLPAYIKSSENSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSLRFFRFG 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 GVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|254486546|ref|ZP_05099751.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
gi|214043415|gb|EEB84053.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
Length = 365
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ E + E + R + P +
Sbjct: 2 ILHLYFARRFVTGFVLISAVLFALLILVDMVEQARKFAE-HDIGWQRLFGMTLLNTPETL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L V + ++GI V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRASGRSALSALQAPVWVAFIIGIMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + + G SD W++ Q I A + + + D T
Sbjct: 121 VAATAKRYIQLSESIRAGGVSTLSISDEGLWLRQGGDQGQTVIRAWRSNADASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
+T + I R +A A + +D L + + TL + +D
Sbjct: 181 LTYAAQGGPIRRIEASSAALEDDGWVLTGAKSWPLELGVNAEGNAEVFETLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRESITDPGVVSIYDLPGFIHQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + V AA P + +I L+I +L
Sbjct: 300 MRHTRFGGTGVAVLASVLLGFGLYFIRSFAQILGENGQIPVVLAAWAPPVASILLAIGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|254477617|ref|ZP_05091003.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031860|gb|EEB72695.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 367
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 81/368 (22%), Positives = 149/368 (40%), Gaps = 12/368 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L+ + LV +IDLNE + + + S + L P +
Sbjct: 2 TLDFYYARRFLQWFAVICAVLLTLVMLIDLNEQIRRF-DAQDLSFGQLFGLTLLNAPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F L R+SELV++RAIG S + L VV + +G+ V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVVLAAFIGLLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
+ DL + +++ G + W++ Q I AK +
Sbjct: 121 VAATSNHYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHAKGYSGDVEDVTLLGV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIK 233
T ++ + + I + A A + L + + S L+ +
Sbjct: 181 TILSYGPEGRPIRQTVARSATLDGSDWVLTNAKVWPLVTGVNPETNATEHASLRLSTTLT 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S Y++ + ++ F R E + PL L+AM L+ A+
Sbjct: 241 SERIRDTLGTATGISVYDLPATIRELAEAG-FSTKRYEVWLQVELARPLFLIAMVLVGAA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R + V + GF LY + + G++G + A P + I L++
Sbjct: 300 FTMRHARFGGTGLAVLMAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAAILLTMG 359
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 360 LLLHAEDG 367
>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
Length = 360
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 139/360 (38%), Positives = 212/360 (58%), Gaps = 2/360 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P
Sbjct: 3 FNTLGRYFFKRYARTTFWFLIGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPT 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG+++ G V+VIN
Sbjct: 63 ILQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALIFGALAVVVIN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P+A G K L +W + ++ IPW++ D IGA+ + + T
Sbjct: 123 PLAAWGTKKAEALEAEW-GSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTV 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I D + I R+DA A + + L VVE + GR+P + L ++ D Q+
Sbjct: 182 IHFDPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLRPDFVQERL 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S F+++ +K+ + F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR
Sbjct: 242 AKADSIQFFDLPRKIEVARSFG-FSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSRF 300
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
NQ R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 301 NQSRSVILGGILSGFVLYVVTVLIKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
Length = 361
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 167/359 (46%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ + L G +L+ +D ++ + G L S A + RVP ++
Sbjct: 5 TLGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGLS-VSAFVIAQASFFRVPQLL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R ELVI+RA G+S WQ + P + ++ LG+F V NP+
Sbjct: 64 ERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASAVFNPM 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + G D WM +P+ I A + + + +
Sbjct: 124 SAYMQERAKQMEAELFGQGSGSLQDANGFWMNQVSPEGQSIINAARSQQQGAVLSGISVF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + R +A A++ LK V +Y P ++ + L + + +
Sbjct: 184 RFEPDFQFKDRIEAREAVLEPGYWLLKDVRKYTLDSAPEEQATLRLPTALTLAQVRNSFA 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 244 TPESVSFWQLPSYIKASESSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSLRFFRFG 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 GVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
Length = 361
Score = 172 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 170/361 (47%), Gaps = 3/361 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RYF ++ + L G +L+ +D ++ + G L S A + RVP
Sbjct: 3 MNTLGRYFAARFVTSALGVFFGLFVLLVFVDYIDLLRRAGGLA-VSALVIAQASFYRVPQ 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++++++PF L+ + + L+R+ ELVI+RA G+S W+ ++P + ++ LG+F V N
Sbjct: 62 LLERLMPFCILIGGMTCYLALSRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFN 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
P++ ++ + + G D WM +P+ I A + + + +
Sbjct: 122 PMSAYMQERAKQMEAELFGQGSGSLQDASGFWMNQVSPEGQSIINAARSQQQGAVLSGIS 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R +A A++ L+ V Y P+ +++ L + + +
Sbjct: 182 VFRFEPDFQFKDRIEAREAVLEPGHWLLRDVRRYTLDSAPVQEDTFRLPTALTLAQVRNS 241
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S SF+++ + S S + Q++ L+ P +L AM ++AASVSL F R
Sbjct: 242 FATPESVSFWQLPSYIRASESSGFATSG-YRLQYHKLLAKPFLLAAMVMLAASVSLRFFR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +ED
Sbjct: 301 FGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|85706341|ref|ZP_01037435.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
gi|85669114|gb|EAQ23981.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
Length = 363
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 77/366 (21%), Positives = 152/366 (41%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + L + ++++ +IDL + P + + + ++P
Sbjct: 2 ILERYFGRRFFMSFLGVTVTLVVMLGLIDLMDELGDF---PELAFGQVLGIVLLKLPEAY 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L RTSELV+ RA G S Q L ++ +G+ + V NP+
Sbjct: 59 YEIIPLVMILASVALFLRLARTSELVVLRASGRSALQGLLAPAAVALAIGLLGLAVGNPL 118
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + D + W++ S + I A + + +
Sbjct: 119 VAATSKRHHDLVNSYSGQASSDLAIASEGLWLRQSAAEGQTVIYAARASSDLGTLYAPSF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMD 235
K + R A A + L + + + + S T+ + D
Sbjct: 179 YDFAPDGKPLRRISATSAQLEEGAWVLTEAKIWDLAQGVNPEASAREDAQMTVPSDLTQD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+E+ K ++ ++ F R F + P+ LVA+ LI+A+ +
Sbjct: 239 RILDSFGSPEYVPIWELPKFIAQLEEAG-FSARRYAIWFQSELAQPVFLVALVLISAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R + V + GF L+ I + G++G + + AA P + ++ + + IL
Sbjct: 298 MQHTRGANVGLSVLTAVLLGFGLHYIRNFAQILGENGQIPILLAAWAPPVASLFIGLGIL 357
Query: 356 LQKEDG 361
L EDG
Sbjct: 358 LHLEDG 363
>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037069|gb|ABF63681.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 368
Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/369 (22%), Positives = 152/369 (41%), Gaps = 13/369 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y+ + +L+ + M LV +IDL+E + + + + L P
Sbjct: 2 ILDLYYARRFLQWFMVIAAVLMSLVMLIDLSEQFRRF-DAQDLRFGQLLELTLLNAPAAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F + R+SELV++RAIG S + L P VV +++LG V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
+ L + ++ G S W++ I A + D
Sbjct: 121 VAATTNRFETLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLYLYD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPI 232
+ +T R A A + D L+ +Q R + L +
Sbjct: 181 VSILTYAPDGGPTRRTVAAEARLEGDDWVLRDAKVWQLILGVNPERSAKRYDELRLPTTL 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S Y++ + + +++ F R + + PL LVAM L+ A
Sbjct: 241 TNERIRDTLGYAEGISIYDLPQTIQSLSEAG-FSTTRFQVWLQVELARPLFLVAMVLVGA 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ +R + V + GF LY + + G++G + + AA P + +I L++
Sbjct: 300 AFTMRHTRLGGTGVAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLTM 359
Query: 353 LILLQKEDG 361
+LL EDG
Sbjct: 360 GLLLHAEDG 368
>gi|163739705|ref|ZP_02147113.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|163743162|ref|ZP_02150544.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161383579|gb|EDQ07966.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161386935|gb|EDQ11296.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 367
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 82/368 (22%), Positives = 154/368 (41%), Gaps = 12/368 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L+ + LV +IDLNE + E + S+ + L P +
Sbjct: 2 TLDFYYARRFLQWFAVICGVLLTLVMLIDLNEQIRRF-EAQDLSLGQLFGLTLLNTPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + L+G+ V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFIGLARSSELVVTRAIGRSGIRALAAPVLLAALIGVLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
+ DL + +++ G + W++ Q I A + D
Sbjct: 121 VAATSNRYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHATGYSGDTDDITLYDV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIK 233
T ++ + + I + A+ A + L K + ++ L+ +
Sbjct: 181 TILSYGPEGRPIRQTLAEEAALDGGDWVLIKAKVWPLIVGVNPETNAERHSTLRLSTTLT 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S Y++ + +++ F R E + PL L+AM L+ A+
Sbjct: 241 SERIRDTLGTATGISVYDLPATIRELSEAG-FSTKRYEVWLQVELARPLFLIAMALVGAA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R + V + GF LY + + G++G + A P + I L++
Sbjct: 300 FTMRHARFGGTGLAVLTAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAAILLTMG 359
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 360 LLLHAEDG 367
>gi|330993928|ref|ZP_08317858.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758874|gb|EGG75388.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 371
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/367 (22%), Positives = 159/367 (43%), Gaps = 10/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + TL + L+ + D ++ ++ PN S + +A +P
Sbjct: 6 TLSLYIARQFTGATLAVIAFLTGLITMFDFIDLLRRVSTRPNVPTSLVSQIAFLHIPFAC 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ I+ F+ L R+SELV++RA GIS WQ L V+ ++L+G ++P+
Sbjct: 66 LEILPFGVLLGGILCFWRLARSSELVVARAAGISAWQFLAGPVICAVLIGAMATTCVSPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
++ + L +Q+ + + + + I ++
Sbjct: 126 SSVMYRRAEALDRQYLRDNNGKSLNLSGGTLWLRQGDNGLVDHGVDIIHARQVRLNGGVL 185
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T + + ++ R +A + + L+ + +P D TL+ + +
Sbjct: 186 HIGGITIFRLGPDDGLLTRIEAQSGYLGGGRWILEGARMLRPDEMPSDMGRFTLHADLTL 245
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
G ++ + S + + + N+S F R F L+ +P++ M L+AA
Sbjct: 246 AGVEESFASPDTLSVWALPGFIRQLNRSG-FSTIRHRLHFQSLLTLPVLSGTMALVAAGF 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +R +++ G+ +GF L+ + I FG++G L PV AA P + L++ +
Sbjct: 305 SMRPARRGGVIRMISSGVAAGFALFALSKIAAQFGETGTLPPVLAAWAPTGAGLCLAVTL 364
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 365 LLHLEDG 371
>gi|86138692|ref|ZP_01057265.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
gi|85824752|gb|EAQ44954.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
Length = 367
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/367 (23%), Positives = 154/367 (41%), Gaps = 12/367 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + +L+ M LV +IDLNE + E + S S L P +
Sbjct: 3 LDLYYARRFLQWFAVICGVLMTLVMLIDLNEQIRRFDEF-DVSASEIVGLTLLNAPAALS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + LLGI V +NPI
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAGLLGILAVSTLNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
+ + L ++ G S W++ +P I A + + D T
Sbjct: 122 AATTNLSKTLADTYRTGGPSALSFSGEGLWLRQGSPSGQSVIHASSYGGGSDNIVLYDVT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
+ + I + A+ A + ++ L K + R + L +
Sbjct: 182 ILAYAPQGGPIRQIIAESARLDGEEWLLHKAKAWHMTAGLNPERSAATHETLRLPTTLTQ 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + S Y++ + ++ F R + + + PL L+AM L+ A+
Sbjct: 242 DRIRDRLGSADGISVYDLPTTIRDLAQAG-FSTKRYQVWYQVELARPLFLIAMVLVGAAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R + V + GF LY + + G++G + AA P + +I L++ +
Sbjct: 301 TMRHTRFGGTGLAVLTAVLLGFGLYFVRNFAQILGENGQIPVALAAWAPPVASILLTMGL 360
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 361 LLHAEDG 367
>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
Length = 364
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 91/358 (25%), Positives = 169/358 (47%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ + LG +L+ ++D E+ + +P S A + RVP ++
Sbjct: 9 TLARYFARRFIVASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRVPQLL 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++++GI + NPI
Sbjct: 69 ERLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVAYNPI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ Q NG Q W+ + I A + T
Sbjct: 129 SAAMQERSKEMEAQLFSNGGVQDVAQS-WINQVTSEGQSIISAALSQNQGTRLSGVTVFR 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ R DA A + + +L Y PI +S L+ + +
Sbjct: 188 FNPDGSFRDRIDARDANLEPGQWRLGGARIYSMTAAPIPHDSFLLSTNLTPSQVRNSFAT 247
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ SF+++ + + S S + Q+ L+ P +L +M L+AA+VSL F R
Sbjct: 248 PETVSFWQLPEYIRSSQSSGLATAG-YRLQYQKLLARPFLLASMVLVAAAVSLRFFRFGG 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + L LL +EDG
Sbjct: 307 VQKMVLSGVAAGFLLYVLSKVTEDLSKAELMHPLAAAWLPVCVGGLIGFLALLHQEDG 364
>gi|149201834|ref|ZP_01878808.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
gi|149144882|gb|EDM32911.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
Length = 378
Score = 171 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 146/366 (39%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + + + ++++ +IDL + P + + + ++P
Sbjct: 17 ILERYFGRRFFVSFMGVTITMLVIMGLIDLMDELGDF---PELAFGQVLGIVLLKLPEAY 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L R+SE+V+ RA G S + L ++ +G+ + V NP+
Sbjct: 74 YEIIPLVMILASVALFLRLARSSEMVVLRASGRSALRGLLAPAAVALAIGLLGLAVGNPL 133
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + D + W++ I A + + +
Sbjct: 134 VAATAKRHHDLVNTYSGQTYSDLAIASEGLWLRQGGTAGQTVIYAARSSSDLSTLYGPSF 193
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMD 235
+ + R A A + L+ + + ++ + D
Sbjct: 194 YDFAPDGQPLRRISASTARLETGAWLLEDAKIWDLAENINPEAMARQEAQLSVPSDLTQD 253
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+E+ K + ++ F R F + P+ LVA+ LI+A+++
Sbjct: 254 RILDSFGSPEYIPIWELPKFIDQLEEAG-FSARRYAIWFQSELAQPVFLVALVLISAALT 312
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF L+ + G++G L + AA P + ++ + + IL
Sbjct: 313 MGHTRGANVGLSVLTAVLLGFGLHYVRNFAHILGENGQLPILLAAWAPPVASLFIGLGIL 372
Query: 356 LQKEDG 361
L EDG
Sbjct: 373 LHLEDG 378
>gi|126739400|ref|ZP_01755093.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
gi|126719500|gb|EBA16209.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
Length = 367
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 12/367 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + + + L M LV +IDL+E + + + S + L P +
Sbjct: 3 LDLYYARRFAQWFLVITGVLMTLVVLIDLSEQIRRF-DAFDLSAGQILGLTLLNAPAAMN 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + L+G+ V +NPI
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAALIGVLAVSTLNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
+ L ++ G + W++ +P + A I D T
Sbjct: 122 AATTNRYKSLSDSYRTGGPSVLSLTGEGLWLRQGSPSGQSVVHAAGYGGGREEIILYDVT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVV------EYQYGRIPIDKNSTTLNIPIKM 234
+T K + R A A + L+ + + +
Sbjct: 182 ILTYGKDSGPRTRTQARSARLEGSDWVLQDAKVWPLSAWTNPEISAGEHQELRIPTTLTQ 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + S Y++ + + ++ F + E + + P L+AM L+ A+
Sbjct: 242 DRIRDRLDASDGISIYDLPQTIRELAEAG-FATKKHEVWYQVELARPFFLIAMVLVGAAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R + V + GF LY I + G++G + AA P + +I L++ +
Sbjct: 301 TMRHTRFGGTGMAVLTAVLLGFGLYFIRNFAQILGENGEIPVALAAWAPPVASILLTLGL 360
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 361 LLHAEDG 367
>gi|114766152|ref|ZP_01445156.1| permease, YjgP/YjgQ family protein [Pelagibaca bermudensis
HTCC2601]
gi|114541612|gb|EAU44654.1| permease, YjgP/YjgQ family protein [Roseovarius sp. HTCC2601]
Length = 364
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 164/366 (44%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L L L + + ++DL + + G + S + L +P +
Sbjct: 2 ILHRYFARRFLTMFLSILTVFALFLALLDLVDQLRRFG--SDVSFGQVVYLTLLNLPSGL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ +F + R+SELV+ RA G S L V ++++ +V ++NPI
Sbjct: 60 YEILPLVMILATAALFLMMARSSELVVVRAAGRSGLTALAGPVAVALVISGVSVAILNPI 119
Query: 124 ATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + DL + +K NG W++ + D I A + P+ + + +
Sbjct: 120 VAATSRQSSDLTESYKSNGASTISIGREGLWLRQGGDEGDTVIRAARANPDATVLYEVSF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKMD 235
+ + ++ + R +A+ A + + L+ + + L + D
Sbjct: 180 VEYEAESGPLRRIEAEEAALQDGAWVLRDAKAWPLQSGRSPEGMSERFERLELPSDLTQD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
G + + +S + +++ + + + F R + P+ LVAM L+AA +
Sbjct: 240 GIRDRFGKPSSVAIWDLPEFIEGLEMAG-FSARRHVVWLQMELARPVFLVAMVLVAAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V + GF LY + + G++G L P+ AA IP I ++ L++ ++
Sbjct: 299 MRPARLGRTGLHVLAAVLLGFGLYYVRNFAQIMGENGQLPPILAAWIPPIASLLLALGLV 358
Query: 356 LQKEDG 361
LQ EDG
Sbjct: 359 LQMEDG 364
>gi|260576762|ref|ZP_05844747.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
gi|259021014|gb|EEW24325.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
Length = 364
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ L +LG ++ +ID + ++ S+ + +LAA +P +
Sbjct: 2 TLSLYIARRFVWLLLGIILGFATILLLIDSLDQLRRLSG-QGISLGQATLLAAMNMPSSL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F L R+SELV+ RA G S + L V+ ++L G V V+NP+
Sbjct: 61 YRILPLLMILAAITLFMGLARSSELVVVRASGRSGLRFLATPVLAALLFGAVAVAVLNPL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K L+ ++ +G+ +D W++ P I A + + T
Sbjct: 121 VAATLKRYDTLLSKYAQDGESVLSINDDGLWLRQGGPDGQTVIHAARANADGTELFSVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
++ D R +A A + + L + + + T L + D
Sbjct: 181 LSFDAAGLPSARTEAREARLGDGAWALVDAKTWPLNLANPEASAARETGTRLPSDLTRDA 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A+ S + + ++ ++ F + +PL+L AM LIAA ++
Sbjct: 241 IRDSFGTPAAISIWNLPSYIAGLERAG-FSARSHRVWLQTELALPLLLAAMVLIAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+RS + V + GF ++ + + G++G + AA P + ++ +LL
Sbjct: 300 RPTRSGKTGTYVLLALLGGFGIFFLRNFAQVLGENGQIPIAMAAWSPPAAAVLFAVGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|254460215|ref|ZP_05073631.1| permease, YjgP/YjgQ family [Rhodobacterales bacterium HTCC2083]
gi|206676804|gb|EDZ41291.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium HTCC2083]
Length = 365
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + L LL + + +IDL E + + + S S L P I
Sbjct: 2 ILHFYFARRFFRVFLTTLLIFLAFLTLIDLVEQMRRF-DSKDVSFSDIVFLTLFNAPGAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + ++ + +F L RTSELV++R+ G S L + + ++GI TV + NPI
Sbjct: 61 YQILPLVMILSAVSLFLTLARTSELVVTRSAGRSALVTLASPMCVAAVIGITTVTLFNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
S + I L Q++K W++ + I A + D
Sbjct: 121 VASTTRQYITLEQEYKSQKKNTVSIGRDGLWLRQGDENGQTVIHALSTSDDMRTLFDARF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMD 235
+ + ++ R AD A + N +L + + + + L + ++
Sbjct: 181 LQYNTDSQPKTRIIADEARLTNTGWQLIRAKHWSLDTSGNPEETAREIDVLMLPTTLTIE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + A+ S +E+ + ++ F R + PL L+AM L+ AS +
Sbjct: 241 NIRDSFSEPAAISIWEMDAYIEGLEEAG-FSTRRHKVWQQMEFARPLFLMAMVLVGASFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V I GF LY + + G++G L + AA P I +I L++ +L
Sbjct: 300 MRHTRFGKAGVAVLAAIMMGFGLYYVRNFAQILGENGQLPTMIAAWTPPIASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHMEDG 365
>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
Length = 365
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +L + + +L+ ++D E+ + L + S A + RVP ++
Sbjct: 7 TLGRYFAGRFLVSAVGVFASIFVLLVLVDYIEMVRKTSGLASASALMVAETSLFRVPQLL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP+
Sbjct: 67 EKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNPM 126
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + W+ NP + I A + + T
Sbjct: 127 SANLRELSKRMEAELFGAAPGGGVQDASGFWLNQINPDGSVIINAARSEQQGVRLTGLTL 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R +A A + + + K V + P+D+ + L + +
Sbjct: 187 FRFDTEKHFKDRIEAREATLEDGQWVFKSVRRFSLDAPPVDEPTFILPTSLTPAQVRNSF 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ LI P +L AM ++AASVSL F R
Sbjct: 247 STPETVSFWQLPSYIRSSESSGFATAG-YRLQYHKLIAQPFLLAAMVMLAASVSLRFFRM 305
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+ AA +PV + + LL +EDG
Sbjct: 306 GGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIVAAWLPVFVGGLTGFMALLYQEDG 365
>gi|218460846|ref|ZP_03500937.1| putative permease protein [Rhizobium etli Kim 5]
Length = 362
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 145/362 (40%), Positives = 214/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTAWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|126736392|ref|ZP_01752134.1| putative permease [Roseobacter sp. CCS2]
gi|126714213|gb|EBA11082.1| putative permease [Roseobacter sp. CCS2]
Length = 364
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 85/365 (23%), Positives = 154/365 (42%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF +L++ L + +++ +DL + + G + + +L+ +P
Sbjct: 2 ILHRYFASRFLRSFLGVGMVFFLIMLFVDLVDQLRRFGSK-DATFVDLLMLSLLNIPQAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ I +F +L+R+SE+V++RA G S L + ++L+GIF V V+NPI
Sbjct: 61 YAILPLIMILATIALFLSLSRSSEMVVTRAAGRSALHSLLAPLTVALLVGIFAVGVMNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
K + + W++ N I A+ + + D T +
Sbjct: 121 VAGTSKEFEARSDALRGDSSVLSFGSSGLWLRQGNATGQTVIRAQSANLDGTLLTDVTFL 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDG 236
T I R A A + L+ +Q + + S L+ + D
Sbjct: 181 TFAPDGNPITRISAASAELTTGAWVLRDAKSWQLAGVTTPEASAQLDAERTVQSTLTPDQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S +E+ + + F R F+ + +P+ LV+M LI AS +L
Sbjct: 241 IRDSFGTPSSIPIWELPAFIDRLQTAG-FSAQRHLVWFHTELALPIFLVSMVLIGASFTL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++V + + F+ Y I + G++G L + AA P I +S+ LL
Sbjct: 300 RHQRGGRTGMMVMFAVLLAFVTYFIRNFAQVLGENGQLPVLLAAWAPPFAAIGISMGFLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HHEDG 364
>gi|296116657|ref|ZP_06835267.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295976869|gb|EFG83637.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 371
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 10/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + L + L+ + D ++ ++ PN S + +A +P +
Sbjct: 6 TLSLYIARQFTYAVLAVIAFLTGLITLFDFIDLLRRVSSRPNVPASLVSEIAVLHIPFAM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ I+ F+ L R+SELV++RA GIS WQ L V ++L+G + VI+P+
Sbjct: 66 LEILPFGVLLGGIICFWRLARSSELVVARAAGISAWQFLAGPVGCALLIGALSTTVISPL 125
Query: 124 ATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQISNPQ------QDIFIGAKKILPENH 174
+++ + L QQ+ S WM+ S+ I ++
Sbjct: 126 SSAMYRRAEILDQQYLRESTVKTINMSGGALWMRQSDSGLVDHGVAIIHARRVRLRDNVM 185
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ +D ++ ++ R +A + N + L+ P+D TL + +
Sbjct: 186 RISGISIFRLDGQDHMLARIEAGHGYLGNGRWVLEGARLLHPDENPVDMGHMTLRADLTL 245
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
G Q + S + + + N+S F + R +F L+ +P++ M L+AA
Sbjct: 246 AGVQDSLASPNTLSVWALPGFIKLLNRSG-FSSIRHRLRFQSLLTLPVLCGTMALVAAGF 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +R +++ G+ +GF L+ I I FG+SG L PV AA P + L++ +
Sbjct: 305 SMRPARRGGVVRMISLGVGAGFALFAISKIAAQFGESGALPPVLAAWAPTGAGLCLAVSL 364
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 365 LLHLEDG 371
>gi|310816138|ref|YP_003964102.1| putative permease [Ketogulonicigenium vulgare Y25]
gi|308754873|gb|ADO42802.1| putative permease [Ketogulonicigenium vulgare Y25]
Length = 360
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 13/365 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF Y K L G +++ +I+L E + G ++ L VP +
Sbjct: 2 ILHRYFALRYFKAFLGTAAGFFLMLVMIELIEQLRRFGGQSDFPA-----LTLLNVPATL 56
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P I ++ +V+F L R+SE+V++RA G S L V+ +L+G+ V+ NPI
Sbjct: 57 YQVLPLIVIISALVLFLGLARSSEMVVTRAAGRSALIALIAPVLIVMLMGLLAVMAFNPI 116
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
S + + I + + W++ + I A P+ T +
Sbjct: 117 VASTSREYDNRIATITGSSRILQIGGDAIWLRQGDEDGQSVIRAAASDPDGTTLRGVTML 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDG 236
+ R DA A + D +++ + + S T+ + D
Sbjct: 177 SYTNDGIPARRIDAAAATLSGDHWQMQNAKVWPLNTGQNPEASATIHATLAVPSNLSPDE 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ AS S +E+ + + F R + +P LVAM LIAA +L
Sbjct: 237 IRNSFGNPASISVWELPAFIKRMEDAG-FTAQRQIVHLQSELALPAFLVAMMLIAAVFTL 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++V + + F LY I + + G++G L P+ AA + + I+L + +LL
Sbjct: 296 RHQRGGRTGMMVLFAVLISFSLYFIRNLAQILGENGQLTPLLAAWVTPLAAIALGVGLLL 355
Query: 357 QKEDG 361
EDG
Sbjct: 356 HLEDG 360
>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 364
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 167/360 (46%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + L +L+F+ID E+ G+ + +A R+P I
Sbjct: 6 TLTRYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTTLLRIALLRLPAYI 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +I F LV +I LNR SEL + RA G+S+WQ L P + + +GIF + V NP+
Sbjct: 66 EFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFNPL 125
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ G L + N + W++ + + +GA +
Sbjct: 126 ASRGRATSEKLYAKAFGNEANLLRAQGGGSWIRQNGADGESVLGAAAASNQGLTLTGVLV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D++ R DA A + + +L+ + G+ P S L+ + D Q
Sbjct: 186 FAYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPEKFKSYLLSTYLTPDRVQDAL 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + + ++K+ R Q+ L+V P++ +AM L+AA+VSL RS
Sbjct: 246 GTVFSISFWDLPELIQAADKA-KLSTERLRVQYQSLLVRPMLCLAMVLLAATVSLRSFRS 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +VA G+ G + + I + G +G+ AA +PV+L +++S +LL +EDG
Sbjct: 305 GGIQTMVATGMIGGVGFFLLSEIARQIGIAGLAPAWVAAWMPVVLVLAISTTVLLHQEDG 364
>gi|296445732|ref|ZP_06887685.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
gi|296256712|gb|EFH03786.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
Length = 361
Score = 169 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + KT L L+FV+ E+ + G++P A++ RVP
Sbjct: 5 TLSRYLAARFAKTILAIFATMFCLMFVVYFVELLRRAGDIPQAGADTVALMTILRVPATA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+PF L + F +L R ELV++RA G+S+WQ L P ++++G+ +V + NP+
Sbjct: 65 ETILPFAVLFGAMTTFVDLTRKLELVVARASGVSVWQFLFPPAFVALVIGVVSVTLYNPV 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + + + D W++++ + A + +
Sbjct: 125 SAVMKQRSDQMELELFGVQGSVRVDHSKWLRLTGVDGTAILHATDYQAGGARLTEVSVNV 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K+ + R +A A + L++ G S L + + +
Sbjct: 185 YSKEGLFLERVEAARARLLAGVFVLEEARVNAPGEESRTVGSYLLATDLTPEQLVTATTP 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
F+ +++ + + QF L+ PL+LVAM L+AAS SL F R
Sbjct: 245 PQGAPFWSLLELGEKTADAG-LDPTGYILQFQTLLARPLLLVAMVLVAASFSLRFFRMGG 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
V+ G+ +GF+LY + + G +G++ P+ AA P ++ L + LL EDG
Sbjct: 304 IARTVSGGVVAGFVLYIVTKLFSDLGGAGVISPLVAAWSPALVGSMLGAVSLLYSEDG 361
>gi|222148152|ref|YP_002549109.1| hypothetical protein Avi_1542 [Agrobacterium vitis S4]
gi|221735140|gb|ACM36103.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 362
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 133/362 (36%), Positives = 206/362 (56%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYF K Y T +F++G ++F+ID +E+ + + S+ +L R+P
Sbjct: 2 MLNTLSRYFLKRYAITVFWFVIGVAAIIFLIDFSEVSGRFSDNEQSSLFGVFLLTLMRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++QQ +PFI L +V LNR SELVI+RA GIS+WQ + PF++G+ +LG T L+I
Sbjct: 62 LLLQQTVPFIALFSGMVTLITLNRRSELVIARAAGISVWQFMFPFLLGAFMLGCATSLLI 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G+K L ++ D G + WM+ ++D IGA +L + +
Sbjct: 122 NPLAALGQKQAATLEAEYSDPGKASNNKNSVPWMRQITGKEDTIIGATSVLEDGTLLMQA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D + +I R+DA A + + LK VVE + G P + S ++ +K + Q+
Sbjct: 182 VFIHFDGQGRITSRQDARTAKLQDGYWLLKDVVETKPGETPKRETSAQVSTNLKQEFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + +FYE+ +K++ + + ETQF+ L+ P + VAMTLIAA+VSL+FS
Sbjct: 242 RLAQPDTVAFYELSQKIAVAKSYGV-STKNLETQFHTLLSTPFLFVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGF+LY ++K+FG SG++ P A +PVI+ +L ILL +E
Sbjct: 301 RFNQSRSVILGGIISGFVLYVATVLVKAFGSSGVVPPFVATWVPVIVATALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|89054304|ref|YP_509755.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
gi|88863853|gb|ABD54730.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
Length = 364
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 150/366 (40%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + +L + L M ++ ID+ + ++G + S LA +P I
Sbjct: 2 ILHLYIARRFLVSFGIVLAVFMAILLPIDMADQLRRIG--SDQGFSAVLQLALLNLPRSI 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P ++ +V+F L RTSELV+ RA G S + V+ ++++G ++L++NP+
Sbjct: 60 TGLMPLFVMLATLVLFLGLARTSELVVVRAAGRSALKSAASPVIVALIIGGLSLLILNPL 119
Query: 124 ATSGEKIGIDLIQ--QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + ++ + W++ + I A + D +
Sbjct: 120 VATTARQYDLTLARLSGLESRSVSVTGEGFWLRQGTGSEQTVIRASATNSDGTHLFDASF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMD 235
T D ++ R DA A++ L V + + + + TL + +
Sbjct: 180 FTFDADGALLERMDAREAVLARAAWTLTDVKRWPLAQSDNAEADAELFPTLTLPSTLTPE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + +E+ + N + F + T F + PL+L AM LI A +
Sbjct: 240 QIRDSFGNPETVPIFELPGFIRQLNDAG-FAALQHRTWFQMQLSSPLLLAAMVLIGAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + ++V I GF + + + G++G L A P I I L+I L
Sbjct: 299 MRHTRFGKTGVMVLGAILLGFGVVFLRRFAEVLGETGQLAASLVAWTPPIAAILLAIGFL 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHTEDG 364
>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
Length = 365
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +L + + +L+ ++D E+ + L + S A + RVP ++
Sbjct: 7 TLGRYFAGRFLVSAVGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQLL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP+
Sbjct: 67 EKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNPM 126
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + + W+ NP + I A + + T
Sbjct: 127 SANLRELSKRMEAELFGSAPGGGVQDASGFWLNQLNPDGSVIINAARSEQQGVRLTGLTL 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D KN+ R +A A + + + K V + P+D+ + L + +
Sbjct: 187 FRFDTKNRFKDRIEAREASLEDGQWVFKSVRRFSLDAPPVDEPTFILPTTLTPAQVRNSF 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ LI P +L AM ++AASVSL F R
Sbjct: 247 STPETVSFWQLPSYIRSSESSGFATAG-YRLQYHKLIAQPFLLAAMVMLAASVSLRFFRM 305
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL +EDG
Sbjct: 306 GGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIAAAWLPVFVGGLTGFMALLYQEDG 365
>gi|327188011|gb|EGE55241.1| putative permease protein [Rhizobium etli CNPAF512]
Length = 362
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 144/362 (39%), Positives = 214/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
Length = 360
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 89/358 (24%), Positives = 171/358 (47%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ +L LG +L+ ++D E+ + +P S A + RVP ++
Sbjct: 5 TLARYFARRFIIASLAVFLGIFLLLVLVDYIEMVRRTSSIPTASAIMVAETSLFRVPQLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++L+G+ +V NPI
Sbjct: 65 EKLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVVYNPI 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + NG Q + W+ + I A + T
Sbjct: 125 SAAMQERSKEMEAKLFSNGGVQNVEQS-WINQVTSEGQSIISAALSQNQGTRLSGVTVFR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ R DA+ A + + +L + P+ +++ L + +
Sbjct: 184 FNPDGSFRDRIDANEANLEPGEWRLGGARIHSMTAAPVIQDNLLLKTNLTPAQVRNSFAT 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ SF+++ + S S + Q+ L+ P +L +M L+AA+VSL F R
Sbjct: 244 PETVSFWQLPGYIQSSASSGLATAG-YRLQYQKLLARPFLLASMVLVAAAVSLRFFRFGG 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 VQKMVLSGVAAGFLLYVLSKVTEDLSKAELMYPLAAAWLPVCVGGLTGFLALLHQEDG 360
>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
Length = 363
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 81/360 (22%), Positives = 161/360 (44%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ L +L+ ++D E+ + L + S A + RVP ++
Sbjct: 5 TLGRYFAGRFVVAALGVFASIFLLLVLVDYIEMVRKTSGLASASAIMVAETSLFRVPQLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++ PF L+ + + L+R ELV++RA G+S WQ ++P + ++L+G+ + NP+
Sbjct: 65 EKLTPFCMLIGAMTCYLALSRRLELVVARAAGVSAWQFISPALGSALLIGVIATVAYNPM 124
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + + W+ I A + + T
Sbjct: 125 SANLRELSKRMEAELFGSAPGGGIQDASGFWLNQVTNDGQTIINAARSEQQGVRLTGLTL 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R +A A + + + V + PI++ + + +
Sbjct: 185 FRFDTEQHFKERVEAREAELEVGQWIFRNVRRFSLDGPPIEQAVLAIPTTLTEAQVRNSF 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 245 STPETVSFWQLPSYIRSSESSGFATAG-YRLQYHKLLAQPFLLAAMVMLAASVSLRFFRM 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV++ L LL +EDG
Sbjct: 304 GGVQKMVLSGVGAGFLLYVLSKVTEDLSKAELMHPIAAAWLPVVVGGLTGFLALLYQEDG 363
>gi|254473284|ref|ZP_05086681.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
gi|211957400|gb|EEA92603.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
Length = 363
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 100/360 (27%), Positives = 182/360 (50%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K +LK+ L L A +L+ + D+ E+ + G+ +S+ R A ++A RVPL++
Sbjct: 5 TLSLYISKRFLKSILALFLFAAVLILLFDVLELVRRGGDREGFSLLRIAAISALRVPLLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L +I F L+R+ ELV++RA GIS+WQ P ++ + +GI +V+ NP
Sbjct: 65 EQVIPFAVLFGSIWAFVTLSRSLELVVARAAGISVWQFTAPALLTGLFIGIASVIGYNPG 124
Query: 124 ATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ ++ + + W++ + + + A+ I + T
Sbjct: 125 AVYLQQKSDEVAEGLFSVEQTYLLEGSGEVWLRQNGTDGESVLHARHIGGQGATLNGVTI 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D++ + R +A A++ +L V Y P ++ +++ + ++
Sbjct: 185 FSFDRQGEFSERIEARRAVLAEGMWRLTDAVVYALDTDPQHYDNYSVSTFLTPTEVKESI 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + S ++ + YR Q+ L+ PL+LVAM +IAA+VSL SR
Sbjct: 245 GSPESISFWSLPRFIELSQRAGLP-AYRYSLQYQTLLAKPLLLVAMIVIAAAVSLRVSRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ +GI +GF+LY + I K G +GI+ AA P + + + ILL +EDG
Sbjct: 304 GGIGRLIIWGIIAGFVLYAVSEISKDLGGAGIVPTAVAAWAPGVFGVLMGFTILLNQEDG 363
>gi|86357091|ref|YP_468983.1| putative permease protein [Rhizobium etli CFN 42]
gi|86281193|gb|ABC90256.1| putative permease protein [Rhizobium etli CFN 42]
Length = 362
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 144/362 (39%), Positives = 215/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|241203948|ref|YP_002975044.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857838|gb|ACS55505.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 362
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 141/362 (38%), Positives = 214/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQESGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|325292486|ref|YP_004278350.1| permease protein [Agrobacterium sp. H13-3]
gi|325060339|gb|ADY64030.1| putative permease protein [Agrobacterium sp. H13-3]
Length = 362
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 140/359 (38%), Positives = 217/359 (60%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF K YL T ++FLLG ++++ D +E +M +P YS+ L A R+PLI+
Sbjct: 5 TLARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSVPGYSVPGALGLTALRLPLIL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ IPFI L V + +LNR ELV++RA G+S WQ + PFV+G++ LGI +VLV+NPI
Sbjct: 65 QQTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQFILPFVLGAVFLGILSVLVLNPI 124
Query: 124 ATSGEKIGIDLIQQWKDNGD-KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G+ + + W++ G ++ DIIPWM+ S+ QD IGAK + D I
Sbjct: 125 AAWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSGGQDTIIGAKSFEDNGTMLLDVVLI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+DK I+ R+DA A + + L V E + G +P+ + ST ++ ++ + Q+
Sbjct: 185 HLDKDGNIVSRQDAKSAKLEDGYWLLNGVAETRAGHVPVRQESTRISTNLRREFVQERMT 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
Q + +F+++ K+ + + ETQ++FL+ PL+LVAMTLIAA+VSL+FSR
Sbjct: 245 QTETVAFFDLSHKIEVAKSFG-LSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFSRFA 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +EDG
Sbjct: 304 QSRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQEDG 362
>gi|15888447|ref|NP_354128.1| hypothetical protein Atu1107 [Agrobacterium tumefaciens str. C58]
gi|15156139|gb|AAK86913.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 362
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 136/361 (37%), Positives = 217/361 (60%), Gaps = 2/361 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RYF K YL TT++F+LG ++++ D +E +M LP YS+ L A R+PL
Sbjct: 3 FNTLARYFLKRYLMTTIWFVLGVSSIIYLADFSETARRMSGLPGYSVPAALGLTALRLPL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+QQ +PFI L V + +LNR ELV++RA GIS WQ + PFV+G++ +GI +V+V+N
Sbjct: 63 ILQQTVPFIALFVGMTTLISLNRRYELVVTRAAGISAWQFILPFVLGAVFIGILSVMVLN 122
Query: 122 PIATSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
PIA G+ + + +++ G ++ +IIPWM+ S+ +D IGAK + D
Sbjct: 123 PIAAWGQNKSLAMEAGLRNDAGGGRQQEIIPWMRQSSGGKDTIIGAKSFEDNGTMLLDVV 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I +DK I+ RKDA A + + L V E + G +P+ + S ++ ++ + Q+
Sbjct: 183 LIDVDKDGNIVSRKDAKSAKLEDGYWLLNGVSETRAGHVPVRQESMQISTNLRREFVQER 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + +F+++ K+ + + ETQ++FL+ PL+LVAMTLIAA+VSL+FSR
Sbjct: 243 MTQTETVAFFDLSHKIEVAKSFG-LSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFSR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +ED
Sbjct: 302 FAQSRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQED 361
Query: 361 G 361
G
Sbjct: 362 G 362
>gi|254418566|ref|ZP_05032290.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
gi|196184743|gb|EDX79719.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
Length = 378
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 5/363 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY L++ L LV +ID E+ +G + S R L A + P +
Sbjct: 17 GRIERYVLIQQLRSLGVALAVISALVMLIDFVEVSRGVGSDQDLSALRILGLVALKSPSV 76
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q++PF+ L + + LNR SELV RA G+S W+ + P +++LG+ TV V+ P
Sbjct: 77 IVQLLPFVFLFGTLAAYIGLNRRSELVAMRAAGVSAWRFVLPAAGMALVLGVLTVTVLGP 136
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A++G+ + + S+ W++ + Q+ + I A + N D T
Sbjct: 137 LASAGDGLWQRERARISGTAPGASSNDAIWLREGDDQRQMIIRAGRQDRANARLLDVTFF 196
Query: 183 TIDK----KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
R DA A + + +L V G+ + +S L + +
Sbjct: 197 IYTTDAEGNRDFSERIDARSAALSAGRWRLTDAVGASIGQRAVTYSSLDLLSSLADEEAF 256
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S F+ + ++ + +F L+V PL+ AM+++AA+ SL
Sbjct: 257 ERFARPQSTPFWSLPNQIKRIEDAGFASTA-YRLRFQQLLVTPLVFAAMSILAAAFSLRL 315
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GF + + + G + ++ P AA +P ILT + +L
Sbjct: 316 MRLGDLAKMSVAAVVLGFAFFFLNQFSSAMGSAEVVPPFVAAWLPPILTALAAFTLLFYT 375
Query: 359 EDG 361
EDG
Sbjct: 376 EDG 378
>gi|323137698|ref|ZP_08072774.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
gi|322396995|gb|EFX99520.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
Length = 361
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 86/358 (24%), Positives = 158/358 (44%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RYF +++T L L+FV+ E+ + + P A++ A +VP
Sbjct: 5 TITRYFAWRFMRTILAIFFTIFCLMFVVVFVEMLRRASDNPQAGAGMVALMTAMKVPAAA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+PF L ++ F +L R EL+++RA G+S+WQ + P V+ ++L+G+F+V V NP+
Sbjct: 65 EMILPFAVLFGSMATFVDLTRKLELIVARAAGMSVWQFITPPVLTALLIGVFSVAVYNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ S ++ + + + D W++ + A +
Sbjct: 125 SASMKQRSDQMELELFGVPGSLRIDHGVWLRQHGVDGLAVMHAMGTAKGGTELTFVSVNI 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ R +A A + L + G S L + + +
Sbjct: 185 YSPNGGFLERVEAQSARLEPGVWVLNGAIVSAPGEPARPVASYMLATDLTPEQAAAATTP 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
F+E+ + + + ++ + QF L+ PL+LVAM L+AAS SL F R
Sbjct: 245 PQGTPFWELPEMTARTTEAGLDSTG-YRLQFQTLLARPLLLVAMVLVAASFSLRFFRFGG 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ G+ +GF+LY + ++ G +G++ P+ AA P ++ L L LL EDG
Sbjct: 304 VAKTLSGGVAAGFVLYIVTKVLSDLGGAGLISPLVAAWSPALVGSMLGTLTLLYSEDG 361
>gi|190891135|ref|YP_001977677.1| permease [Rhizobium etli CIAT 652]
gi|190696414|gb|ACE90499.1| putative permease protein [Rhizobium etli CIAT 652]
Length = 362
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 143/362 (39%), Positives = 214/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYVATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|222085452|ref|YP_002543982.1| permease protein [Agrobacterium radiobacter K84]
gi|221722900|gb|ACM26056.1| permease protein [Agrobacterium radiobacter K84]
Length = 361
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 142/358 (39%), Positives = 213/358 (59%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y+ TTL+F LG LV++ID +E ++ LP Y++ G ++ A R+P I+
Sbjct: 5 TLGRYFFTRYIITTLWFFLGVTSLVYLIDFSETAGRLAGLPGYTVKIGLLMTAVRLPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ +PFI L V + V LNR ELVI+RA GIS+WQ + PFVVG+ +G+ T+L +NP+
Sbjct: 65 QQTVPFIALFVGMTVLIALNRRRELVIARAAGISVWQFMTPFVVGAFCVGLLTMLALNPV 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G++ + + + + + IPW++ S+ + DI IGAK +L + I
Sbjct: 125 AAWGQRQAETMEADLRGDPSYRNTLSIPWLRQSDGKSDIIIGAKAVLDNGTTLMNVVFIH 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + II R+DA A + N L VVE G IP K++T + +K D + Q
Sbjct: 185 FDSQGNIILRQDAQSAKLENGYWLLNSVVERAPGEIPAHKSTTQVRTNLKQDFVSERLAQ 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +FY++ +++ + I ETQF+ L+ P +LVAMTLIAA+VSL+FSR NQ
Sbjct: 245 PETIAFYDLSNRIAIAKSFGI-STKALETQFHSLLSQPFLLVAMTLIAATVSLKFSRFNQ 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SG++ P A IPVI+ ++ ILL +EDG
Sbjct: 304 SRSVILGGILSGFVLYVVTVLVKAFGSSGVVPPFVATWIPVIVALAFGATILLHQEDG 361
>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 362
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 96/358 (26%), Positives = 155/358 (43%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY +L L +++VIDL E+ + G P + S A L+ R P +
Sbjct: 6 TLGRYLSSRFLFMILAVFGTIFSMIYVIDLVEMLRRAGNRPGATASLIAFLSFLRAPSVS 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+QI+PF L + F NL R EL+++RA GISIWQL+ P + ++ +GIF+V + NPI
Sbjct: 66 EQILPFCVLFGTMATFINLTRRLELLVARAAGISIWQLMMPPLGIALAIGIFSVTLYNPI 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + Q++ W++ ++ I A+ + T T
Sbjct: 126 SAMMKHRADGIETELFGGIGGQETKGGLWIRQNSVDGQAIIRAETVEAGGSRLGGVTLYT 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K R +A A + ++ + G + L + +
Sbjct: 186 YGKDGSFEARIEARHAKLVPGVWQMTEARIIVPGEEIQEAGLYLLATNLTPGEVSENIVT 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+E+ + + + + R QF L+ PL +AM LIAA+ SL F R
Sbjct: 246 PESVPFWELQSFRAATELAG-LDSTRYRLQFQLLLARPLFFIAMVLIAAAFSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G +GF+LY + G SG+L AA P ++ L L LL +EDG
Sbjct: 305 ITKMVCGGAGAGFVLYIVSKFTGDLGTSGLLSAPIAAWSPAVVASMLGALALLNQEDG 362
>gi|116251334|ref|YP_767172.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255982|emb|CAK07063.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 362
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 141/362 (38%), Positives = 213/362 (58%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNTVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|83953613|ref|ZP_00962334.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
gi|83841558|gb|EAP80727.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
Length = 365
Score = 166 bits (418), Expect = 8e-39, Method: Composition-based stats.
Identities = 78/366 (21%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ + + + R + + P +
Sbjct: 2 ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSY-DIGWLRLFGMTLLKTPETM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + G SD W++ + + I A + + + D T
Sbjct: 121 VAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMD 235
++ ++ R +AD A + + L + ++ TL + +D
Sbjct: 181 LSYAPESGPARRIEADSAALEDGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRDSITDPGAVSIYDLPDYIKQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + + AA P + +I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPVASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHSEDG 365
>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
Length = 362
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 158/358 (44%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +++T L L LV+ +D E+ + G+ S A LA R P +
Sbjct: 6 TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDSEGASTGLMAQLALYRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP+
Sbjct: 66 ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + K + W++ + I A+ + T
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSVDGQAIIRAETAVEGTTTLAGVTVFQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + +A A +++ +L+ V P + + ++
Sbjct: 186 FDDAGVFTAQIEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLDPSQIRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ ++ R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 246 PESVPFWQLPETIARHERAG-LDATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +EDG
Sbjct: 305 VGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQEDG 362
>gi|307946742|ref|ZP_07662077.1| permease [Roseibium sp. TrichSKD4]
gi|307770406|gb|EFO29632.1| permease [Roseibium sp. TrichSKD4]
Length = 364
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 181/360 (50%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + K+ L L A +L+F+ D+ E+ + G+ +++ R A+++ RVPL++
Sbjct: 6 TLAIYFSARFFKSILGLFLLAAVLIFLFDVLELVRRGGDQEGFTVVRVALISILRVPLLL 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L +I+ F L+R ELV++RA GIS+WQ P VV +++G +V+ NP+
Sbjct: 66 EQVIPFAVLFGSILAFVTLSRALELVVARASGISVWQFAAPAVVVGLIIGTLSVVAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + + + ++ W++ + + AK++L D T
Sbjct: 126 AVWLQHRSDEAAAGLFGSEQSFLLQTTQDVWVRQDGLDGESVLLAKQLLDGGTRLLDVTI 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK+ R +A A + + L+ V Y R P ++ + ++
Sbjct: 186 FAFDKEGSFKERVEAATARLGDQIWFLEDVTVYTTERDPQQYGRYEVSTYLTATEVRESI 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + + + + YR Q+ L+ PL+L AM +IAA+VSL SR
Sbjct: 246 GSPESISFWSLPRFIELARNAGLP-AYRYTLQYQTLLARPLLLTAMIIIAAAVSLRVSRF 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI +GF+LY + + K FG +GI+ P+ AA P I + + + ILL++EDG
Sbjct: 305 GGLGSMILGGIVAGFVLYVLSELAKDFGGAGIVPPIVAAWAPGIFGVLMGLTILLKQEDG 364
>gi|225627183|ref|ZP_03785221.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225618018|gb|EEH15062.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
Length = 397
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 115/359 (32%), Positives = 194/359 (54%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+
Sbjct: 40 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 99
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 100 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 159
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 160 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 219
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 220 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 279
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 280 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 338
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 339 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 397
>gi|83942393|ref|ZP_00954854.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
gi|83846486|gb|EAP84362.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
Length = 365
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 154/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ + + + R + P +
Sbjct: 2 ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSY-DIGWLRLFGMTLLNTPETM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + G SD W++ + + I A + + + D T
Sbjct: 121 VAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMD 235
++ + R +AD A + N L + ++ TL + +D
Sbjct: 181 LSYAPEGGPARRIEADSAALENGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRDSITDPGAVSIYDLPDYIKQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + + AA P + +I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPVASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHSEDG 365
>gi|58038774|ref|YP_190738.1| hypothetical protein GOX0299 [Gluconobacter oxydans 621H]
gi|58001188|gb|AAW60082.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 396
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ +TL +L LV + D ++ + PN S +AA VP I
Sbjct: 32 TLAIYIARQFMLSTLSMVLALTGLVSLFDFIDLLRRAATRPNVPASLIVKIAALHVPYYI 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ IV F L R+SEL+++RA GIS WQ L + ++L G+ T I+ +
Sbjct: 92 IYVLPFGILLGGIVCFSRLTRSSELIVARAAGISAWQFLASPLACALLTGLLTTTGISAL 151
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW------- 176
+++ + L Q + G + + + + IL +
Sbjct: 152 SSTMFRSAEMLDQTYLRTGGGPLTLNGGALWLRQSDDGLVPHGVAILHAQDVHLIDGALK 211
Query: 177 -EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ +D ++++I R +A + + + L +P TL + +
Sbjct: 212 VSGVSIFRLDDRDRLIVRVEAPQGALGDHQWILHGTSVLHPDHLPQQIGDMTLPSDLTVG 271
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S +S R F L+ +P++ M L++A S
Sbjct: 272 RVQESFASPDTLSVFALPGFISLLERSGFPSI-RHRLHFQSLLALPILAGTMALVSAGFS 330
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R ++ GI +GF L+TI + + FG+SG L PV AA P + L++ +L
Sbjct: 331 MRPTRRGGVARMLGSGIAAGFALFTISKVAEQFGESGALPPVLAAWAPTGAGLCLAVALL 390
Query: 356 LQKEDG 361
L EDG
Sbjct: 391 LHMEDG 396
>gi|254510403|ref|ZP_05122470.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
gi|221534114|gb|EEE37102.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
Length = 382
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + ++++ L + L+ +IDL E + + + S + L P I
Sbjct: 18 ILDRYFARRFVQSFLVIGGIFLTLMILIDLIEQVRRF-DSVDLSFGQLLQLTLLNTPAAI 76
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P + ++ I +F L R+SELV++RAIG S + L V ++++G F V ++NPI
Sbjct: 77 SEMLPLLMILATIALFVGLARSSELVVTRAIGRSGIRALLAPVFIALMIGGFAVALLNPI 136
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFT 180
A + + L +++ G S W++ ++ I A + + D T
Sbjct: 137 AAATSEEFQRLADGYRNQGSSALSISGEGLWLRQASASGQSVIHATGTVNGDDFALHDVT 196
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT------LNIPIKM 234
T K + A A + N L++ + + + T L +
Sbjct: 197 ITTFSSDGKPNQQIAARQADLENGYWTLRQAKVWTLEDDLNPETNATTHEVLNLPTTLTR 256
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D Q S S Y++ + +S ++ F + E + PL LV+M LI A+
Sbjct: 257 DRILDTLGQQDSVSVYDLPQLISDLREAG-FATKQYEVWLQVQLARPLFLVSMVLIGAAF 315
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R I V + GF +Y I + G++G L AA P I LS+ +
Sbjct: 316 TMRHVRFGGTGIAVLTAVLLGFGIYFIRNFAQILGENGQLPIFVAAWAPPFAGILLSLGL 375
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 376 LLHAEDG 382
>gi|217978371|ref|YP_002362518.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
gi|217503747|gb|ACK51156.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
Length = 361
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 92/358 (25%), Positives = 171/358 (47%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +L L + +VFV+D E+ + +LP+ S A+LA R P
Sbjct: 5 TLGRYFSARFLTLILAVFVTICGMVFVVDFVEMLRRTTDLPDASPRSVALLAMLRAPSAS 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L ++ F +L R EL+I+RA+G+S+W L P + +I++GI +V++ NP+
Sbjct: 65 EQLMPFCVLCGSMAAFLDLTRKLELLIARAVGVSVWGFLVPPIAIAIVIGIGSVMLFNPV 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + + +Q +D W++ + D I A+ + + T
Sbjct: 125 SAAMKQRADKIEVEIFGRLTQQNADADIWIRQKSVDGDAIIKARTMSRDGSRLTKPTVYI 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D +K +A+ A + + + ++ G I+ + L + +
Sbjct: 185 YDDHDKFEAEVEAEHAQLSDGVWRFEQARILMPGEETIETSVYLLASNLTPAQVARGPIS 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +F+++ ++++ + + QF L+ PL+ VAM LIAA+ SL F R
Sbjct: 245 PQSVAFWDLDAARRQTDRAG-LDSTAYKLQFQSLLARPLLFVAMVLIAAAFSLRFFRFGG 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+LY ++ G +G++ AA P ++ L L LL +EDG
Sbjct: 304 IEKMVGGGVAAGFVLYVATKLVGDLGGAGLVSAPVAAWSPAVIASMLGALALLNQEDG 361
>gi|163853055|ref|YP_001641098.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218531865|ref|YP_002422681.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240140388|ref|YP_002964867.1| putative permease [Methylobacterium extorquens AM1]
gi|254562992|ref|YP_003070087.1| permease [Methylobacterium extorquens DM4]
gi|163664660|gb|ABY32027.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218524168|gb|ACK84753.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240010364|gb|ACS41590.1| putative permease [Methylobacterium extorquens AM1]
gi|254270270|emb|CAX26266.1| putative permease [Methylobacterium extorquens DM4]
Length = 362
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +++T L L LV+ +D E+ + G+ S A LA R P +
Sbjct: 6 TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDAEGASPGLMAQLALYRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP+
Sbjct: 66 ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + K + W++ + I A+ + T
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSIDGQAIIRAETAVEGTTTLAGVTVFQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D+ + +A A +++ +L+ V P + + ++
Sbjct: 186 FDEAGAFAAQLEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLDPSQIRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ ++ R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 246 PESVPFWQLPETIARHERAG-LDATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +EDG
Sbjct: 305 VGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQEDG 362
>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
Length = 360
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 137/358 (38%), Positives = 208/358 (58%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFFK Y+ TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P I+
Sbjct: 5 TLGRYFFKRYIVTTFWFLVGIFALIFIIDFSELASRMSALPHYTVSGALLMTTFRIPTIL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFV+G+ L+G+ V+ +NP+
Sbjct: 65 QQTVPFVALFSAMAALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVALNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G K L +W + +S IPW++ D IGA+ + + T I
Sbjct: 125 AAWGTKRAEALEAEW-GSSRSAQSSSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIH 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + I R+DA A + + L V E GR+P + L +K D Q+ +
Sbjct: 184 FDPQGTITLRQDAKSAKLEDGYWLLNGVTESGNGRLPRRLETVQLRTNLKADFVQERLAK 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ K+ + F ETQ + L+ +PL+LVAMTLIAA VSL+FSR NQ
Sbjct: 244 ADSIQFFDLPHKIEVARSFG-FSTDAMETQLHSLLSLPLLLVAMTLIAACVSLKFSRFNQ 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 303 SRSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|149914657|ref|ZP_01903187.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
gi|149811450|gb|EDM71285.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
Length = 363
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 152/366 (41%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L T L +IL+F+ID+ + P + S +A + P
Sbjct: 2 TLHLYLARRFLLTFLAIFSVFVILLFLIDIVKEMQDF---PAFPFSEILEIALLKAPSAN 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P I ++ + +F ++R SELV+ RA G S + L +V + L+G+ +V ++NPI
Sbjct: 59 YEILPLIVILATVALFLRMSRNSELVVVRASGRSAIRALVAPLVVAGLIGVVSVTMLNPI 118
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + + W++ + I A++ + + T
Sbjct: 119 VAASAKRHNDLMNSYLGWSINIMAIAPEGLWLRQGSETGQTVIHAERASSDVSTLYNTTF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMD 235
I R A A + + + +L + + +S ++ + D
Sbjct: 179 IAFGLDGTPQRRITAASATLGDGEWRLADAKLWDLSSGINPESTAQELDSYSVPSALTQD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S +++ K + +S F R + PL L+A+ + AA+ +
Sbjct: 239 RIIDSFGKPEYISIWDLPKFIGQLEESG-FSARRYAVWMQTELARPLFLIALVMAAAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR + + V I GF L+ I + G++G + + AA P + L++ IL
Sbjct: 298 MRHSRLHNTGVSVLTAIMLGFGLHYIRNFAQILGENGQIPIMLAAWAPPVAAFLLALGIL 357
Query: 356 LQKEDG 361
L E+G
Sbjct: 358 LHMEEG 363
>gi|154246776|ref|YP_001417734.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160861|gb|ABS68077.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 364
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 162/361 (44%), Gaps = 4/361 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + L + L+ ++D E+ + + ++ A++ R P
Sbjct: 5 ILGFYFARRFASAVVLIFLSCVTLIVLVDFLEMARRTADREQVTVGLLALVTLYRAPSFT 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L I F L+R ELV++RA+G+S+WQ + P V+ + L+G+F+ V NP+
Sbjct: 65 EQLMPFAVLFGAISTFVLLSRRLELVVARAVGLSVWQFITPPVLVAFLIGVFSTTVFNPV 124
Query: 124 ATSGEKIGIDLIQQWK---DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + +G + W++ + I A+
Sbjct: 125 SADFKERANQIEGEIFGSSSSGLLPQGKKEFWVRQQSVDGQSIIQAQATRQGGRALSGVV 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
DK ++++ R +A A + + L G ++ + + Q+
Sbjct: 185 VFEFDKADRLVERVEARSATLGDGAWILTDARVLVPGLDHQHYDTYLIATNLDPKQIQES 244
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ SF+++ + + +S F R Q L+ P +LVAM LIAA V L R
Sbjct: 245 LIAPETVSFWQLPAAIRSAEQSG-FGAERYRLQLQSLLARPFLLVAMVLIAAVVGLRVFR 303
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ +GF+LY + + G +G + PVAAA P + I L +LILL +ED
Sbjct: 304 FGGVGQTILGGVLAGFLLYVGTKLAEDLGDAGFVHPVAAAWFPAVAGILLGVLILLHRED 363
Query: 361 G 361
G
Sbjct: 364 G 364
>gi|298291095|ref|YP_003693034.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927606|gb|ADH88415.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 361
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 96/360 (26%), Positives = 165/360 (45%), Gaps = 5/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + +L L +G L+ +IDL E+ ++GE + +L R+P
Sbjct: 5 TLGVYFGRRFLGAVLGIFVGCAGLIMLIDLLELSRRVGER-DVDFGTLMLLVVYRMPFFT 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L I F L+R ELV++RA GIS WQ + P + ++LLG+F+ V NP+
Sbjct: 64 EQLLPFAVLFGAIGTFLTLSRRLELVVARAAGISAWQFIAPACLLALLLGVFSTTVYNPV 123
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L + + G + WM+ + I A
Sbjct: 124 SADFKDRASRLEAEIFNRQTGLFAMTTGGFWMRQQSVDGQAIIQAAATSDGGRQLTGVNV 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+K+ R +A AI+ +L+ G + ++ L + + Q+
Sbjct: 184 FLFGADDKLTERIEAVRAILEPGAWRLEHARVLTPGIGLQEYDAYMLATNLTPNQVQETL 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + F+++ + + + F R Q+ L+ P++L+AM LIAASVSL R
Sbjct: 244 QS-DTVPFWQLPAAIDAATRVG-FGAERYRLQYQSLLARPMLLLAMVLIAASVSLRVFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF+LY + + G++GI+ PV AA P ++ + ILILL +EDG
Sbjct: 302 GGIGQTILGGVAAGFLLYVSTKLAEDLGEAGIVHPVIAAWFPAVVGALMGILILLHREDG 361
>gi|83952307|ref|ZP_00961039.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
gi|83837313|gb|EAP76610.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
Length = 363
Score = 164 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 145/366 (39%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + +L T + +L+ +IDL + P+ + +P
Sbjct: 2 ILHFYFARKFLWTLIGIATVFSVLLGLIDLVDELQDF---PDLPFFDVLEIVLLNLPHAN 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F L R+SELV+ RA G S L V + L+G+ V + NP+
Sbjct: 59 YEILPLVMILATVALFVRLARSSELVVLRASGRSALAGLAGPVAVAALVGLVGVTMFNPV 118
Query: 124 ATSGEKIGIDLIQ--QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + S W++ + I AK P+ T
Sbjct: 119 VAASAKRYNDLVNGHSGLGDNVLAISSEGLWLRQGTEEGQTVIHAKSATPDLSTLFGATF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKMD 235
+ + + R A+ A + + L V + + + T+ + D
Sbjct: 179 TSFTPEGDPMRRLTAESAELGQGQWHLSDVKIWDLANTDNPEASARTQDRLTIRAALTRD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +++ + + F R F + PL L+A+ L+ A+ +
Sbjct: 239 RIIDSFGKPEYIPIWDLPAFIDQLETAG-FSARRYAVWFQMELAQPLFLIALVLVGAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R V + GF L+ I + G++G + + AA P + ++ L++ IL
Sbjct: 298 MKHARLANTGTSVLAAVMLGFTLHYIRNFAQVLGENGQIPILLAAWAPPVASLLLALGIL 357
Query: 356 LQKEDG 361
L EDG
Sbjct: 358 LHMEDG 363
>gi|254503227|ref|ZP_05115378.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
gi|222439298|gb|EEE45977.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
Length = 364
Score = 164 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 105/360 (29%), Positives = 178/360 (49%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF ++K L L A +L+F+ D+ E+ + + +++ R A ++ RVPL++
Sbjct: 6 TLSVYFSGRFIKAILGLFLFAAVLLFLFDVLELVRRGSDREGFTVMRVAYISLLRVPLLL 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L I F L+R ELV++RA GIS+WQ P V+ + LGIF++ V NP
Sbjct: 66 EQVIPFTVLFGAIAAFVTLSRALELVVTRAAGISVWQFSTPAVLVGLFLGIFSITVYNPA 125
Query: 124 ATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ + D +S W++ + + A ++L T
Sbjct: 126 AVYLQQKSEEAAAGLFGADQTFLLQSSGEVWVRQDGLDGESVLRASQLLDNGTRLLRVTV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T D+ R +A+ A + N+ L + Y P + ++ + ++
Sbjct: 186 FTFDEDGTFRERIEAEQARLGNETWYLDNAIVYTTENDPQSYSVYQISTFLTATEVRESI 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + + + + YR Q+ L+ PL+L+AM LIAA+VSL+ SR
Sbjct: 246 GSPESISFWNLPRFIDLARNAGLP-AYRYNLQYQSLLARPLLLIAMILIAAAVSLKVSRF 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL +EDG
Sbjct: 305 GGLGRMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLHQEDG 364
>gi|162149096|ref|YP_001603557.1| hypothetical protein GDI_3326 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545161|ref|YP_002277390.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787673|emb|CAP57269.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209532838|gb|ACI52775.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 369
Score = 164 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 158/365 (43%), Gaps = 8/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + + +L LV + D ++ ++ P+ S + +A VP +
Sbjct: 6 TLSFYIARQFTLAVMAMILSLTGLVSLFDFIDLLRRVATRPDVPTSLASEIALLHVPYFM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L + ++L+GI ++P+
Sbjct: 66 IEILPFGVLLGGIVCFWRLTRSSELIVARAAGISAWQFLTGPLSCALLIGILATGALSPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQI------SNPQQDIFIGAKKILPENHIW 176
++ + L + +G W++ + + + +
Sbjct: 126 SSIMYRQAETLDHVYLRSGGPLNLSDGALWLRQADSGLVPHGVAILHARSVHLQGGVLRI 185
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ +D + +I R +A + + + R+P+ + + +
Sbjct: 186 GGISLFRLDDTDHLIVRIEAPEGYLGRKVWIFQDARTIRPDRLPVPAGRFVMPTDLTVPR 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ + S + + ++ +S F + R F L+ +P++ M L+AA S+
Sbjct: 246 VQESFASPDTLSVWALPGFIALLERSG-FSSIRHRLHFQTLLTLPILAGTMALVAAGFSM 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R ++ G+ +GF L+TI + FG+SG + P+ AA P + L++ +LL
Sbjct: 305 RPTRRGGVARMIGSGVAAGFALFTISKVAAQFGESGAMPPLLAAWAPTGAGLCLAVSLLL 364
Query: 357 QKEDG 361
EDG
Sbjct: 365 HLEDG 369
>gi|163759135|ref|ZP_02166221.1| putative permease [Hoeflea phototrophica DFL-43]
gi|162283539|gb|EDQ33824.1| putative permease [Hoeflea phototrophica DFL-43]
Length = 345
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 105/346 (30%), Positives = 179/346 (51%), Gaps = 2/346 (0%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L + L ++++ ++D NE ++ P Y+++ G +++A RVP I+Q IPF+ L+ +
Sbjct: 2 TFLTYCLAILVIILLVDFNESGRRLSAAPEYTVTTGLLVSALRVPTILQAAIPFVVLIAS 61
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
I LNR ELV++RA GIS WQ L P V ++L+G V +N A S + +I
Sbjct: 62 IATLLQLNRKYELVVARAAGISAWQFLAPLVAANLLIGFIAVAGLNTFAASAMQWAETII 121
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ ++ G Q SD PW++ Q D +GA+ T D+ I R +
Sbjct: 122 VE-RNLGSAQSSDSAPWLRQRTEQGDTVLGARASAAGGTRLSGATFFLFDEDQNIKERLE 180
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
A+ A++ + + L V + S ++ +K + + + F+E+ K
Sbjct: 181 AETAVLGDGEWVLTNVRRIRGSEPVEQVESASVPTSLKAEFVGESLTSPDTVPFFELRDK 240
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
++ + E QF+ L+ P +L AMTLIAA VSL+F R Q ++ GI +G
Sbjct: 241 IAVAKSFG-LSATSYEMQFHRLVAQPALLAAMTLIAAIVSLKFVRFGQSLTVILGGILAG 299
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
F+LY + ++++F +G + P+ AA +PV++ +L +LL KEDG
Sbjct: 300 FVLYVVSELIQAFANAGTIPPIVAAWLPVLVASALGTTVLLHKEDG 345
>gi|84500988|ref|ZP_00999223.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
gi|84391055|gb|EAQ03473.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
Length = 365
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 154/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF +L+ + L +++ +ID+ E ++ P ++S+ L P I
Sbjct: 2 TLHYYFAWRFLRIFIGLLAVFLLMSMLIDVAEHLRRLSSTP-ATLSQVLRLVLLNAPEGI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L RTSELV++RA G S + L V+ + +G+ V ++NPI
Sbjct: 61 YTILPLIMILATVALFLGLARTSELVVTRAAGRSALRSLVSPVIVAFAIGVIGVAMVNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K L++ ++ G S W++ + I A + P+ D T
Sbjct: 121 VAATSKRYAALLESYQSGGADVLSLSAEGLWLRQGGAEGQTVIRAARSNPQATELYDVTM 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKMD 235
I R +A A + +L + + S + +
Sbjct: 181 IAYAPDGGPEKRIEAARARLIAGAWELHDARIWPLARGTNPEARTERRESFEVPSSLTEA 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ +++ + ++ F R F + PL LVAM LIAA+ +
Sbjct: 241 RIRDTFGEPSAIPVWDMPTYIGLLTEAG-FSARRHAVWFQMELAKPLFLVAMVLIAAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + I V I GF LY + ++ G++G + AA P + ++ L++ +L
Sbjct: 300 MRHVRFGKTGIAVLSAIMLGFALYYVRNFVQILGENGQIPVALAAWAPPVASVLLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHMEDG 365
>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
Length = 365
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 153/366 (41%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ L L ++F+ID+ E + + A LA P +
Sbjct: 2 ILHLYFARKFITNFLMILFVFFGIIFLIDMVEQLRRFSSNS-VGMKEAAQLALLNAPGNL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F NL RTSELVI+RA G S L ++ + LG+F V V NPI
Sbjct: 61 YRILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + W++ N + I A + I + T
Sbjct: 121 GAATANLYETISDRHLGRASNALSIGAEGLWLRQGNVEGQTVIHANETNQNGTILGNVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKMD 235
+ D +++I+R +A A + L + + + ++ L +
Sbjct: 181 LAFDINSQVIYRIEAKTAKLETGGWVLNDTKRWDFKDTLNPELSASTTDTIRLQSNLTQK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + F+E+ ++ + F + + + + +P L+AM LI A +
Sbjct: 241 EIQESFGAPSDIPFWELPAFIASLENAG-FSSTQHRVWYATELALPAFLMAMVLIGAMFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR + I++ I GF L+ + + G SG + + AA P + I L++ +
Sbjct: 300 MRHSRFGKTGIMLLGAIVMGFGLFFLKNFAQVLGNSGQIPVLLAAWTPPLAGILLALGFI 359
Query: 356 LQKEDG 361
L E+G
Sbjct: 360 LHTEEG 365
>gi|62289648|ref|YP_221441.1| hypothetical protein BruAb1_0705 [Brucella abortus bv. 1 str.
9-941]
gi|82699576|ref|YP_414150.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
gi|189023898|ref|YP_001934666.1| permease [Brucella abortus S19]
gi|254688958|ref|ZP_05152212.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
str. 870]
gi|254697092|ref|ZP_05158920.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254729988|ref|ZP_05188566.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
str. 292]
gi|256257206|ref|ZP_05462742.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
str. C68]
gi|260545600|ref|ZP_05821341.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260754447|ref|ZP_05866795.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260757666|ref|ZP_05870014.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260761493|ref|ZP_05873836.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883476|ref|ZP_05895090.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297248056|ref|ZP_06931774.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
gi|62195780|gb|AAX74080.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82615677|emb|CAJ10664.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
Abortus 2308]
gi|189019470|gb|ACD72192.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
gi|260097007|gb|EEW80882.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260667984|gb|EEX54924.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260671925|gb|EEX58746.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674555|gb|EEX61376.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260873004|gb|EEX80073.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297175225|gb|EFH34572.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
Length = 362
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 194/359 (54%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLCHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|209964865|ref|YP_002297780.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209958331|gb|ACI98967.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 364
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 84/360 (23%), Positives = 163/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ L L G + +V+++D E+ + P+ + + ++P I
Sbjct: 6 TLSLYIGRQFVLWFLAILGGMLAIVYLLDTVELLRRAANKPDAAFQIVLTMGLLKLPEIG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+I+PF+ L + F+ L RT ELV+ RA GIS+WQ + P + + L+G+ V V+NPI
Sbjct: 66 QEIVPFVVLFGGMYTFWRLTRTQELVVVRASGISVWQFMAPVLTATFLIGMTLVGVLNPI 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ L ++ ++ W++ Q I A I+P
Sbjct: 126 FSAMLGRYEQLENRYLRGMKSSLDVAESGIWLRQVGEPQAYLIHADAIVPGTLELRQVMV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ R DA A + + +L+ + GR+ + L + Q+
Sbjct: 186 LLNESDGQVSGRFDAASATLRDGFWELRDAWFNRPGRVGEFLPAYRLPTELTEQKIQEAF 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+E+ ++ + + R ++ L+ P++L AM L+AA+ ++ R
Sbjct: 246 ASPDTLSFWELPGFIATLEATG-LSSVRHRLHWHSLLAQPVLLCAMILLAAAFAMRQVRR 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++A GI + +L+ + I+ + G SG + + AA P +++ L LL EDG
Sbjct: 305 GGALTLIALGIAAALLLFVMQDIVLALGMSGTIPVLLAAWAPAGVSVMLGAAALLHLEDG 364
>gi|118590093|ref|ZP_01547496.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
gi|118437065|gb|EAV43703.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
Length = 364
Score = 162 bits (408), Expect = 8e-38, Method: Composition-based stats.
Identities = 109/360 (30%), Positives = 184/360 (51%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF +LK L L A +L+++ D+ E+ + G+ +S+ R A+++A RVPL++
Sbjct: 6 TLSLYFSGRFLKAILGLFLFAAVLIYLFDVLELVRRGGDREGFSVLRVAMISALRVPLLL 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L I F L+R ELV++RA GIS+WQ P ++ I+LGI ++ V NP
Sbjct: 66 EQVIPFTVLFGAIAAFVTLSRALELVVARASGISVWQFSLPAILVGIILGILSITVYNPA 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ ++ + +S W++ + + AK++L + T
Sbjct: 126 AVWFQQKSDEVAAGLFGSEQSFLLQSSNDVWVRQDGLDGESVLLAKQLLEGGTLLRGVTI 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T DK R +AD A + + L+ + Y + P ++ + ++
Sbjct: 186 FTFDKDGTFRERIEADEARLGDQIWYLENAIVYTTEQDPQPYGQYQISTFLTATEVRESI 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + + + + YR Q+ L+ PL+LVAM LIAA+VSL+ SR
Sbjct: 246 GSPESISFWNLPRFIELARNAGLP-AYRYNLQYQTLLARPLLLVAMILIAAAVSLKVSRF 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL +EDG
Sbjct: 305 GGLGSMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLNQEDG 364
>gi|209548670|ref|YP_002280587.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534426|gb|ACI54361.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 362
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 139/362 (38%), Positives = 212/362 (58%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ T +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYMVTMGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGILMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLILGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPMRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IP+I+ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPMIVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
BisA53]
Length = 361
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 86/359 (23%), Positives = 161/359 (44%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF ++ + LG +L+ +D ++ + G A + RVP ++
Sbjct: 5 TLGRYFAGKFVTAAVGVFLGLFVLLVFVDYIDLLRRSGGRA-IPALLIAQTSMFRVPQLL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R ELV++RA G+S WQ + P + ++LLG F +V NP+
Sbjct: 64 ERLMPFCILIGAMTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNPV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + D W+ N + I A + + T
Sbjct: 124 SANLQERAKQNEASMFGDSSGSLQDASGFWINQVNSEGQAIINASHSQQQGVLLTGLTVF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
R +A A + +LK V Y P+++++ L + +
Sbjct: 184 RFATDFSFKDRLEAREATLEPGFWRLKSVRRYSLDAPPVEEDTLLLPTTLTQAQVRNSFS 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ SF+++ + S S Q++ L+ P +L AM ++AASVSL F R
Sbjct: 244 TPETVSFWQLPSYIRSSESSGFATAG-YRLQYHKLLARPFLLAAMVMLAASVSLRFFRFG 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL +EDG
Sbjct: 303 GVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVFVGGLAGFMALLYQEDG 361
>gi|288572984|ref|ZP_06391341.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568725|gb|EFC90282.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 365
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 129/361 (35%), Gaps = 6/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL R+ K + L+ +L +++ DL M S+S L ++P
Sbjct: 3 PRILDRFILKELGSSFLFGVLTFTVILVAGDLLFKIADMLIEKGVSLSTVLKLFVYKLPS 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ ++ F L+ SE+V +A GIS ++ P ++G+ L+ I +
Sbjct: 63 VVVLTLPMSCLLSTLLSFGRLSSNSEIVALKASGISFQRIARPVLLGASLVAISAFFMNE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +++ +++ + + + L +
Sbjct: 123 TVVPIANRAAENILMYDVVKQKPTLLRERMFLKDESGGKLNRVIYVGRLRTRKGSMENVL 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+ ++ AD + L + + L + +
Sbjct: 183 VQEFDDGRLSRITTADEGNWSDGVWTLSDGKAFSVDKEGKVGFLFGFKEQRLPLNLTPAQ 242
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S + S ++ + + ++ I IP + + LI A++ +
Sbjct: 243 VARSSLKPDEMSLSQLREHIEIMKAQGANLIPLW-VSYHLHIAIPWASLVLALIGAALGV 301
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + F Y ++++ ++ G+SG + P+ AA + ++ + L+ L
Sbjct: 302 RPQRRGGMGVGFGLSVLIVFAYYVVMSMGRALGESGHIPPLVAAWLANVVFLGFGGLLTL 361
Query: 357 Q 357
+
Sbjct: 362 R 362
>gi|260433487|ref|ZP_05787458.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
gi|260417315|gb|EEX10574.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
Length = 366
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L++ + + L+ +IDL E + G+ + S + L P I
Sbjct: 2 ILDRYFARRFLQSFVVIGAIFLTLMILIDLIEQVRRFGD-ADLSFGQLLQLTLLNTPAAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P + ++ I +F L R+SELV++RAIG S + L V ++ +G V ++NPI
Sbjct: 61 SEMLPLLMILSTIALFVGLARSSELVVTRAIGRSGIRALAAPVALALGIGALAVALLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFT 180
A + + L Q+++ G S W++ + I A + + D T
Sbjct: 121 AAATSEKYETLSDQYRNGGSSTLSLSRDGLWLRQGSKDGQSVIHAAGTENGDTLKLIDVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKM 234
IT + + A A + + + L+ V ++ + ++ L +
Sbjct: 181 IITFSPQGIPTRQIIAQSAELLDGQWLLRGVKDWSLSRAANPEFFSSEYDTLALPTTLTR 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S Y++ + + ++ F + E + P LV+M LI A+
Sbjct: 241 ERILDRLGHQGLVSIYDLPQLIRDLAQAG-FSTKQYEVWLQAQLARPFFLVSMVLIGAAF 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R I V + GF +Y + + G++G L + AA P I LS+ +
Sbjct: 300 TMRHVRFGGTGIAVLTAVLLGFAIYFVRNFAQILGENGQLPVMLAAWAPPFAAILLSLGL 359
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 360 LLHAEDG 366
>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
Length = 363
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 91/364 (25%), Positives = 162/364 (44%), Gaps = 4/364 (1%)
Query: 1 MPGI---LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
M I L RYF +L+T L + LV+ +D E+ + GE S A L+
Sbjct: 1 MMLIGPTLGRYFAARFLRTVLGVFVTVFALVYTLDFVELLRRAGEAQGASAGLMAQLSLY 60
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R P + + ++PF L ++ L+R ELV++RA GIS WQ L P + ++ LG V
Sbjct: 61 RTPAVAEGVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGLFVALALGALAV 120
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
V NP++ ++ ++ + K S W++ + + A+ +
Sbjct: 121 GVYNPVSAMLKQRSTEIEAKIFAKSTKASSGKDLWIRQKGLDGEAILRAETAVEGTTTLA 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T D K + A A++++ +L V P ++ + +
Sbjct: 181 GVSVFTFDAAGKFAEQLVAARAMLHDGYWELSDVRVLTPDAPPESFDTYLIASNLDPGQV 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ S F+++ ++ + ++ R Q+ L P++ VAM ++AA+VSL
Sbjct: 241 RQRFTPPESVPFWQLPTTIARTERAG-LDATRYRLQYDVLWARPVLFVAMVIVAATVSLR 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R +V G+ +GF LY + +M+ G SG++ AA P ++ L L LL
Sbjct: 300 FFRFGGVGKLVLGGVAAGFALYVVRQVMEGLGASGLVAAPVAAWFPAVVGSLLGTLTLLY 359
Query: 358 KEDG 361
+EDG
Sbjct: 360 QEDG 363
>gi|17987546|ref|NP_540180.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225852206|ref|YP_002732439.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|254693440|ref|ZP_05155268.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|256044379|ref|ZP_05447283.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113222|ref|ZP_05454090.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|256264286|ref|ZP_05466818.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|260563731|ref|ZP_05834217.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|261213693|ref|ZP_05927974.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|265990797|ref|ZP_06103354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994633|ref|ZP_06107190.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|17983249|gb|AAL52444.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225640571|gb|ACO00485.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|260153747|gb|EEW88839.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|260915300|gb|EEX82161.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|262765746|gb|EEZ11535.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001581|gb|EEZ14156.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094546|gb|EEZ18355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|326408705|gb|ADZ65770.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
gi|326538429|gb|ADZ86644.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
Length = 362
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 194/359 (54%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|288958014|ref|YP_003448355.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
gi|288910322|dbj|BAI71811.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
Length = 364
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 87/360 (24%), Positives = 166/360 (46%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ ++ + +V ++D E+ + G P+ + +A ++P I
Sbjct: 6 TLSRYIGRQFIFWFCLLMVILLAIVLLLDTVELLRRAGTKPHVTFGLVVEMALLKLPEIG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQI PF+ L + F+ L R++ELV++RA+G+S WQ L P + + +G+ V ++NP+
Sbjct: 66 QQIFPFVILFAGMFTFWRLTRSAELVVARAVGVSAWQFLMPVMFAAAAIGVVKVTLVNPV 125
Query: 124 ATSGEKIGIDL--IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L + S W++ +N + FI A+ + P +
Sbjct: 126 GAVFIAKYDQLQDRYLKLQSSSLNISRSGLWLRQTNETEQFFIHAELVNPATFELSNVVV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R DA A++ K +L+ + + + P +S T+ + M ++
Sbjct: 186 FLFDADQNYLARVDAPSAVLRERKWELQDAILNRAKKDPEKLDSYTIPTELDMATIEESF 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+E+ + + + F R + L+ P + +AM L AA+ SL R
Sbjct: 246 APPETISFWELPRFIHTLETTG-FPAVRHRLHYQSLLAQPFLFLAMVLFAAAFSLRLPRR 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+L+ + ++++FG S + + AA P +++ L I LL EDG
Sbjct: 305 GGTMAMVTGGVLTGFVLFVMTDVVRTFGMSETIPIIMAAWSPAGISLLLGIAALLHLEDG 364
>gi|23501573|ref|NP_697700.1| hypothetical protein BR0686 [Brucella suis 1330]
gi|161618655|ref|YP_001592542.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163842956|ref|YP_001627360.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|254701469|ref|ZP_05163297.1| hypothetical protein Bsuib55_11506 [Brucella suis bv. 5 str. 513]
gi|254704016|ref|ZP_05165844.1| hypothetical protein Bsuib36_08824 [Brucella suis bv. 3 str. 686]
gi|254707610|ref|ZP_05169438.1| hypothetical protein BpinM_11731 [Brucella pinnipedialis
M163/99/10]
gi|254709807|ref|ZP_05171618.1| hypothetical protein BpinB_05956 [Brucella pinnipedialis B2/94]
gi|256031298|ref|ZP_05444912.1| hypothetical protein BpinM2_11713 [Brucella pinnipedialis
M292/94/1]
gi|256060811|ref|ZP_05450971.1| hypothetical protein Bneo5_10662 [Brucella neotomae 5K33]
gi|256159412|ref|ZP_05457190.1| hypothetical protein BcetM4_10688 [Brucella ceti M490/95/1]
gi|256254706|ref|ZP_05460242.1| hypothetical protein BcetB_10505 [Brucella ceti B1/94]
gi|256369121|ref|YP_003106629.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260168437|ref|ZP_05755248.1| hypothetical protein BruF5_08723 [Brucella sp. F5/99]
gi|260566735|ref|ZP_05837205.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|261221886|ref|ZP_05936167.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261315100|ref|ZP_05954297.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261317345|ref|ZP_05956542.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261324803|ref|ZP_05964000.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261752012|ref|ZP_05995721.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261754671|ref|ZP_05998380.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|261757899|ref|ZP_06001608.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|265988383|ref|ZP_06100940.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|265997849|ref|ZP_06110406.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|294852048|ref|ZP_06792721.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306845287|ref|ZP_07477863.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
gi|23347486|gb|AAN29615.1| conserved hypothetical protein [Brucella suis 1330]
gi|161335466|gb|ABX61771.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163673679|gb|ABY37790.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|255999281|gb|ACU47680.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260156253|gb|EEW91333.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|260920470|gb|EEX87123.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261296568|gb|EEY00065.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261300783|gb|EEY04280.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261304126|gb|EEY07623.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261737883|gb|EEY25879.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|261741765|gb|EEY29691.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261744424|gb|EEY32350.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|262552317|gb|EEZ08307.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|264660580|gb|EEZ30841.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|294820637|gb|EFG37636.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306274446|gb|EFM56253.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
Length = 362
Score = 161 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 115/359 (32%), Positives = 194/359 (54%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|148560142|ref|YP_001258668.1| hypothetical protein BOV_0678 [Brucella ovis ATCC 25840]
gi|148371399|gb|ABQ61378.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 362
Score = 161 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 194/359 (54%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+A+TLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAITLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|239831520|ref|ZP_04679849.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
gi|239823787|gb|EEQ95355.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
Length = 362
Score = 161 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 119/359 (33%), Positives = 189/359 (52%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RVP I+
Sbjct: 5 TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ ++NP
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPF 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAYGFAKADEIASTWKTGKTTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D+K I R DA A + + +L V + G P S + ++ + ++
Sbjct: 185 QFDEKKNIRERFDARRAQLRDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 TPDTIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GFMLY + ++K+FG +G + P AA +PVI+ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVIIATFFGVSFLLHKEDG 362
>gi|153009929|ref|YP_001371144.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
gi|151561817|gb|ABS15315.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
Length = 362
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 118/359 (32%), Positives = 189/359 (52%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RVP I+
Sbjct: 5 TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ ++NP
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPF 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAYGFAKADEIASTWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D+K I R DA A + + +L V + G P S + ++ + ++
Sbjct: 185 QFDEKKNIKVRYDARTAQLKDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 TPDTIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GFMLY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|254713811|ref|ZP_05175622.1| hypothetical protein BcetM6_10740 [Brucella ceti M644/93/1]
gi|254717131|ref|ZP_05178942.1| hypothetical protein BcetM_12059 [Brucella ceti M13/05/1]
gi|261218946|ref|ZP_05933227.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261321555|ref|ZP_05960752.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
gi|260924035|gb|EEX90603.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261294245|gb|EEX97741.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
Length = 362
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 115/359 (32%), Positives = 193/359 (53%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D++ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGASFLLHKEDG 362
>gi|114328862|ref|YP_746019.1| hypothetical protein GbCGDNIH1_2198 [Granulibacter bethesdensis
CGDNIH1]
gi|114317036|gb|ABI63096.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 370
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 85/366 (23%), Positives = 162/366 (44%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L L L+ +LV + D E+ + P+ S + +AA R+P +
Sbjct: 6 TLSSYITRVFLAAALVVLVALTLLVGLFDFIELLRRAATKPDVSFGLVSTIAALRLPWMS 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF L+ I F+ L R+SELV++RA GIS WQ L V + LLG+ + VI+P+
Sbjct: 66 ITILPFAVLLGGIGAFWRLTRSSELVVARAAGISAWQFLALPVGAAALLGMLAMTVISPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT--- 180
++ L + + + + I+ +
Sbjct: 126 SSVMLSRAEQLDNTYLRTSGGPMRLAGGQLWLRQSDPGLDPHGVSIIHAMQVAAHKNSLQ 185
Query: 181 -----SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+D +++++ R +A A + + + L + +P ++ + + +
Sbjct: 186 ASSITVFRLDSEDRLVQRIEAATARLVSGQWVLDNARVLRPSHLPDPPHTVEIPTDLTVR 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + SF+ + + ++S F + R +F L+ +PL+ M L+AA S
Sbjct: 246 RIQESFASPDTLSFWSLPDFIRLLDRSG-FSSLRHRLRFQSLLALPLLCATMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF L+ + + + FG+SG + V AA P + + L++ +L
Sbjct: 305 MRPSRRGGVAKMIGSGVAAGFCLFVVSKVAEEFGQSGTVPVVLAAWAPSVAGLMLAVALL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|254453977|ref|ZP_05067414.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
gi|198268383|gb|EDY92653.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
Length = 362
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 77/364 (21%), Positives = 146/364 (40%), Gaps = 11/364 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RYF + + T G +L+ +IDL E + G + S+ L+ +P I
Sbjct: 2 HRYFARRFAWTFAATFGGFFVLMLLIDLVEQLRRYG--GDASLGDMFQLSLLNLPTGIYA 59
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P I ++ + F L R+SEL+++RA G S L ++ ++++G + V+NP+
Sbjct: 60 ILPLIMVLATVTTFLGLARSSELIVTRAAGRSALNALIAPLIVTLIIGAIAIGVLNPLVA 119
Query: 126 SGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K + +G S+ W++ + I A + + +D T IT
Sbjct: 120 ATLKEYEARENALRSDGPSVLAISENGLWLRQGDDNSQTVIRAGRANLDGTQLQDVTFIT 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP------IDKNSTTLNIPIKMDGF 237
R +A A + +L + + + + + D
Sbjct: 180 FPPTGGPTRRIEAASANLTQGAWELSEAKAWPLNSGRVAESVATTHTTLRIPSTLTADQI 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ +S +E+ + + F R + F + P L+AM LI A ++
Sbjct: 240 RDSFGVPSSIPIWELPAFIDRLEVAG-FSAARHQVWFQMELAQPAFLLAMVLIGAGFTMR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + ++V I F L+ + + G++G + AA P + I+ S+ +LL
Sbjct: 299 HQRGGRTGVMVLTAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAAIAASLGLLLH 358
Query: 358 KEDG 361
EDG
Sbjct: 359 LEDG 362
>gi|302383688|ref|YP_003819511.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194316|gb|ADL01888.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 381
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 86/363 (23%), Positives = 147/363 (40%), Gaps = 6/363 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY K+ L LV +ID EI +G + S R L + P +
Sbjct: 21 GRIERYVLLQLGKSLAVALGVISALVMLIDFVEISRGLGSDTDLSGVRILGLMLIKSPAV 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q++PF+ L + F LNR SEL+ RA G+S W+ + P ++ G+ TV VI P
Sbjct: 81 IVQLLPFVFLFGTLAAFVGLNRRSELIAMRAAGVSAWRFVLPAAGAALAAGVLTVTVIGP 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A SG+ + + W++ Q+ + + A + N D T
Sbjct: 141 LAASGDGMFQRERGR-ISGAVGGGEQEAIWLREGEGQRQMVVRAARQDRANARLLDVTFF 199
Query: 183 TIDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ R DA A + + +L V Q G+ ++ L + D
Sbjct: 200 IYATDPEGRRAFTERIDAASASLSAGRWRLVDAVGAQTGQRATRYSTLDLPSSLADDEAF 259
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S F+ + ++ + F + + L+ PL AMT++AA+ SL
Sbjct: 260 ERFARPQSTPFWSLPGQIQRIEAAG-FSSTAYRLRLQQLLSTPLAFAAMTILAAAFSLRL 318
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GF + + + G + ++ P AA +P +LT + +L
Sbjct: 319 MRLGDLARMAVAAVVLGFAFFFLNQFSAAMGSAEVVPPFIAAWLPAVLTALAAFTLLFYT 378
Query: 359 EDG 361
EDG
Sbjct: 379 EDG 381
>gi|119899192|ref|YP_934405.1| integral membrane protein [Azoarcus sp. BH72]
gi|119671605|emb|CAL95518.1| probable integral membrane protein [Azoarcus sp. BH72]
Length = 358
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 121/359 (33%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY K T L+ + L D + +G+ Y + + + A VP
Sbjct: 1 MSKILSRYLAKEIFGATATVLVAFLGLFAFFDFINELDSVGK-DGYQLYQAVIYVAMIVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ L R SE+ + RA G+S W++L + + + T +
Sbjct: 60 GRVYELLPIAVLIGSLYALTTLARHSEITVMRASGLSTWRMLRILGLIGSVFVVLTFVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E ++ Q+ W++ ++ E+ F
Sbjct: 120 EYIAPPAESAAQQWRLVATNSAVSQQLRSGLWVKDGAQVINVRTLRPDRSMEHVRIYAFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +++ + ++S + +
Sbjct: 180 EHYGLESIS-EAATGVYDGEGQWRLNGIQRTRFTDERTVLEHEDSIIWRSELTPEVLSVL 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + + + N + R E + +V P ++ M +A + R
Sbjct: 239 MVVPERMSVANLWAYVRHLRE-NRQNADRYEIALWKKLVYPFAVLVMLALALPFAFTHDR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ V G+ G + + + + G PV AAL P ++ ++ + ++L E
Sbjct: 298 MGGVSVKVFLGVMLGIGFHLLNGLASNLGVINAWPPVLAALTPSLVFLATAAVMLYSVE 356
>gi|254718822|ref|ZP_05180633.1| hypothetical protein Bru83_04670 [Brucella sp. 83/13]
gi|265983807|ref|ZP_06096542.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306838744|ref|ZP_07471578.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
gi|264662399|gb|EEZ32660.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306406146|gb|EFM62391.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
Length = 362
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 115/359 (32%), Positives = 193/359 (53%), Gaps = 2/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+
Sbjct: 5 TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+
Sbjct: 65 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G ++ WK S PW++ + + IGAK IL + D T I
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
DK+ I R DA A + + +L V+ + G+ P + ++ ++ + ++
Sbjct: 185 QFDKQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLA 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R
Sbjct: 245 SPETIPFTQLRHKIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+F +G + P AA +PV++ + LL KEDG
Sbjct: 304 QSGAMILGGVIAGFVLYVVSVLVKAFSDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 362
>gi|255263663|ref|ZP_05343005.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
gi|255105998|gb|EET48672.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
Length = 363
Score = 159 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 150/365 (41%), Gaps = 10/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + L + ++ +D+ E + + S ++ L P +
Sbjct: 2 ILHRYFARRFFLAFLGVFVIFFAILGFLDMVEQLGKFSG-DDVSFTQTVGLTLLNTPQAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F +L R+SE+V++RA G S + L+ + ++L+G+F V V+NPI
Sbjct: 61 YRILPLVMILSTIALFLSLARSSEMVVTRAAGRSAIRALSAPIFVAVLIGLFAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + S W++ + Q I A+ E T
Sbjct: 121 VAATSQEYEKRASDYRSDDAQVLSVSAEGLWLRQGDNTQQTVIRAEAATLEGTELSRVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-----DG 236
I R +AD A + +L + + +ST ++ D
Sbjct: 181 -LSFTDAGPITRIEADSARLTPGAWELTNAKSWPLDAPNPEASSTKHDVLRVPSTLTRDQ 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ +E+ + + F R F + +P +V+M ++AA +++
Sbjct: 240 IRDGFGTPSAIPIWELPAFIKQLETAG-FSARRHAVWFNMELALPAFMVSMVMVAAGLTM 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + V I GF Y + + G++G + AA I L++ +LL
Sbjct: 299 RHQRGGRVGLSVLAAIMLGFAFYFLRNFAQILGENGQISATLAAWATPAAAICLALGMLL 358
Query: 357 QKEDG 361
EDG
Sbjct: 359 HLEDG 363
>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254547820|gb|ACT56867.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 361
Score = 159 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP
Sbjct: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI
Sbjct: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED
Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|163792837|ref|ZP_02186813.1| Predicted permease [alpha proteobacterium BAL199]
gi|159181483|gb|EDP65995.1| Predicted permease [alpha proteobacterium BAL199]
Length = 365
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 93/361 (25%), Positives = 158/361 (43%), Gaps = 4/361 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ L M +VF++DL E+ + +AA ++P +
Sbjct: 6 TLSTYIGRQFVFWVLGTFAAIMAIVFLLDLIELLRRGSGKDGAHFGVLVEMAALKLPNMG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQI+PF L +++ F L RT+ELV++RA GIS+WQ L P + ++LLG V V+NPI
Sbjct: 66 QQILPFAVLFGSMLAFTRLTRTNELVVARAAGISVWQFLMPAIAVALLLGALKVGVVNPI 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ L N W++ + A + +
Sbjct: 126 SSVMTARFNVLEDTILRNRVDSFMTVGQGGLWIRERTESGQHVVHALAARQNDAELANVL 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I ++ + R DA A + +L V P + S + + + Q
Sbjct: 186 VIRFGHNDEFLERIDARTARLGAGYWELHDTVVTSVKGRPDQRGSIRIPTRLTIQNIQDS 245
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ SF+E+ + + F + ++ L+ PL+L+AM LIAA+ SL +R
Sbjct: 246 FASPETMSFWELPGFIRILENAG-FSAVKHRLYWHALLASPLLLIAMVLIAATFSLRLTR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + G+F+GF+LY + I+ + G S + V AA P +T+ L + LL ED
Sbjct: 305 RGGTLLWASSGLFTGFLLYFMSDIVFALGLSARIPEVLAAWTPATVTMLLGLTSLLHLED 364
Query: 361 G 361
G
Sbjct: 365 G 365
>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
Length = 363
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 4/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + +L L ++L+F+I+L E+ + + P+ + +A VP I
Sbjct: 6 TLSRYLGRQFLGVVLLTFGVFIVLIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF L + F L+R +ELV++RA G+S+WQ + P + + ++G F V NP+
Sbjct: 66 AQTLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPV 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L ++ S W++ ++ + A ++ T
Sbjct: 126 SATLTTRAEQLESKYLSRQASFVAVSANGLWLRQADSTGQSVVHALRMDDGF-RLRRVTI 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D+ N+ R DA A + +L V G ++ + ++
Sbjct: 185 FLYDQGNRFSGRIDAATARLRPGYWELADVWVMMDGEQSRKYDTYRQETSLTQKQIEESF 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S SF+E+ ++ + + F R + F+ L+ P +L M LIAA+ SL +R
Sbjct: 245 AREESISFWELPHFIATAEAAG-FSARRYQIYFHQLLATPALLCTMVLIAAAFSLRVTRM 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V GIFSGF++Y + + + G SGIL AA P ++ L + +L EDG
Sbjct: 304 GGLLQMVLGGIFSGFLIYFLGNLAIALGLSGILPAALAAWAPSLVATLLGLAVLFHLEDG 363
>gi|328544012|ref|YP_004304121.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
gi|326413756|gb|ADZ70819.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
Length = 363
Score = 156 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 101/360 (28%), Positives = 186/360 (51%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + +LK L L A +L+F+ D+ E+ + GE ++S+ R +++ RVPL++
Sbjct: 5 TLTLYFSRRFLKAILGLFLLAAVLIFLFDVLELLRRAGERGDFSVLRITLISLLRVPLLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L I F L+R ELV++RA GIS+WQ P V+ ++++G+ +V + NP+
Sbjct: 65 EQVLPFAVLFGAIWAFVTLSRALELVVARAAGISVWQFGAPAVLVALIIGLVSVTLYNPM 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ ++ + ++ W++ + + A+++L T
Sbjct: 125 AVWMQERSNEVAAGIFGTEETFLLQTTNAVWIRQDGLDGESVLNAEQLLDHGERLLGVTI 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T D+ R +A A + N LK V+ Y P + ++ + ++
Sbjct: 185 FTFDRAGSFQERIEAREARLRNQFWHLKDVIVYTTESDPQRYGTYEVSTYLTPTEVRESI 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + ++++ + YR Q++ L+ PL+L+AM LIAA+VSL SR
Sbjct: 245 GAPESISFWNLPRFIELASRAGLP-AYRYTLQYHSLLARPLLLLAMVLIAAAVSLRVSRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI +GF+LY + + + FG +GI+ P+ AA P + + + ILL +EDG
Sbjct: 304 GGLGGMILGGIIAGFVLYVLSELGRDFGGAGIVPPLVAAWAPGAFGVLMGLTILLNREDG 363
>gi|312897532|ref|ZP_07756952.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
gi|310621384|gb|EFQ04924.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
Length = 364
Score = 156 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 132/364 (36%), Gaps = 9/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K ++ L+ + + + S+ + +P
Sbjct: 1 MRILDKYILKEFIGPFLFGVCAFTSVFVGTGTLYRIANLINQYGASMWAAFRILVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ +++ F ++ SE+++ R+ G + +L P + ++ + + T
Sbjct: 61 IIVITFPMSVLLGSLMAFGRMSAASEIIVMRSGGQNFPRLAMPIFITALCISLGTTAFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + G + + ++ + + +
Sbjct: 121 FVVPKANNAYNRIINEEVKAGAQPTTQDHIILKNVKGSDISSLMYARQYDGQEKRLKDLT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKM 234
+ + + + AD A DK + K + Y + N TL I K
Sbjct: 181 VQEFDNDVLTRVEKADYAEWDGDKWIMHKGIIYDLSGGDEQQVTRTMTFNHQTLPISQKP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + ++ + E+ +++ + +N + + + + +PL + L+ A +
Sbjct: 241 NKMAESQKKPDELTIRELKEQIKVLD-NNSVDTNKMKVELFNRFSMPLASLVCALVGAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ R I + F+ Y+I+TI + G G + P AA +P ++T I +
Sbjct: 300 GLQKQR-GSSSIGFGISVIVIFIYYSIMTISNALGNGGRIPPYVAAFLPDVITGIAGIWL 358
Query: 355 LLQK 358
+ +K
Sbjct: 359 IYKK 362
>gi|332160138|ref|YP_004296715.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607296|emb|CBY28794.1| putative Permease [Yersinia enterocolitica subsp. palearctica Y11]
gi|325664368|gb|ADZ41012.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859698|emb|CBX70034.1| lipopolysaccharide export system permease protein lptG [Yersinia
enterocolitica W22703]
Length = 356
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/362 (20%), Positives = 141/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I + +
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSDFIYIQR-----VSGDKELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
DK+++++ + A A ++ +L +V E S T + +
Sbjct: 175 IYHFDKQDRLLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + +S + R E + I P + M L+A S
Sbjct: 235 LGVVAMNPDSLSISGLHDYSKYLRQSGQESS-RYELNMWGKIFAPFSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GIF GF+ Y + I + PV AL+P IL + +S+ +LL
Sbjct: 294 GPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYNIPPVIGALLPSILFLLISVYLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|123440875|ref|YP_001004866.1| hypothetical protein YE0502 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087836|emb|CAL10622.1| putative membrane protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 356
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 141/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I + +
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSDFIYIQR-----VSGDKELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
D++++++ + A A ++ +L +V E S T + +
Sbjct: 175 IYHFDQQDRLLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + +S + R E + I P + M L+A S
Sbjct: 235 LGVVAMNPDSLSISGLHDYSKYLRQSGQESS-RYELNMWGKIFAPFSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GIF GF+ Y + I + PV AL+P IL + +S+ +LL
Sbjct: 294 GPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYSIPPVIGALLPSILFLLISVYLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|260779400|ref|ZP_05888291.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
gi|260604490|gb|EEX30790.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
Length = 356
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLATFVGLSAIIKYVEQLRKVGQ-GSYDLLQALFYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGYSKLDIGLSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L +W
Sbjct: 120 QWGAPQAQKMARDLRAFTTSGGAIMSVRTGVWARDANDFIFIGKVEDDKLYGLSMWRYND 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ V+L ++ + + D
Sbjct: 180 DKQLESVVHAAEVDYLSDNTWVMKDVQLTEM-ADEVEITKTSLPEYRWTTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E + + P + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELALWRKVTQPFSIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV A++P I+ +++++ +L +K
Sbjct: 298 SVTMGARILSGVVAGFTFYISSEFFGPLSLVYSIPPVFGAVMPSIVFLTVALALLRRK 355
>gi|332142604|ref|YP_004428342.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552626|gb|AEA99344.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
str. 'Deep ecotype']
Length = 353
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFKILDLYIARTLLSTITVTLSVLIGLSALIKFVEQLRKIGE-GDYDMLAAFIYVLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++N + ++++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILAVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E L + G SD + W + + I + +D +
Sbjct: 120 EWVTPFSETKAKQLRTEAISGGSLFSSDKLVWAKDGDRFVSIGQ-----VISQDSLKDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ + A + D L V Q+ D + N + D
Sbjct: 175 IFNFNSDLSLQSITYAKNSTYDGDGWWLSNVEVTQFTETQVSVDDTDRMRWNSTLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S ++ +++ + +N R E + I P+ + M L+A S
Sbjct: 235 GIVAVKPEALSITGLLDYVNYLD-NNDQDPSRYELALWRKIFQPISVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF + + + L P AL+P +L +++ ++L +
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAVAGVMLRR 353
>gi|84516314|ref|ZP_01003674.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
gi|84510010|gb|EAQ06467.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
Length = 364
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/365 (22%), Positives = 150/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L T L L +++ +DL E + + L +P I
Sbjct: 2 ILHRYFARRFLMTFLGVLAVFFLIMLFLDLVEQSRRYAS-AEAGLRDLLTLTLLNIPRAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P I ++ I +F L R+SELV++RA G S + + + +L+GI V V+NPI
Sbjct: 61 YEILPLIMILAAIGLFLGLARSSELVVTRAAGRSALRAILAPLAVGLLIGIVAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K + N W++ + I A + + D T +
Sbjct: 121 VAATSKEYEARGGALRGNASALSIGSSGLWLRQGASDEQTVIRAAGANLDGTVLTDVTFL 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDG 236
T R +A A++ + L+ + +G + + + + D
Sbjct: 181 TFTPDVGPARRVNAASAVLTDGAWVLRNAKVWTFGGTLTPEAGAVTQATMRIASTLTPDQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S +++ + ++ F R + I P+ L+AM +I AS ++
Sbjct: 241 IRDSFGTPSSIPIWQLPAFIDRLREAG-FSAQRHLVWLHSEIAQPVFLMAMVMIGASFTI 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + V I F++Y I + G++G L AA P + ++LS+ ILL
Sbjct: 300 RHQRGGRTGLAVMTAILLAFVIYFIRNFAQVLGENGQLPAALAAWAPPLAAMALSLGILL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HNEDG 364
>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
Length = 363
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 161/357 (45%), Gaps = 4/357 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K + T L ++L+F +D E+ G + S A++ R+P+ +
Sbjct: 9 RYMAKRFAITILGVFFVTLLLIFFVDFVEVLRS-GARKDVSAGTLALITLLRIPIFAELT 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF L+ I F +L+RTSEL I RA G+S+WQ + P ++ +I G+F V V NP+A++
Sbjct: 68 LPFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVYNPVASA 127
Query: 127 GEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W++ + + AK T +
Sbjct: 128 MKAKSEKIQAEIFQSEKSFATSRGTGSWLRQESVDGPTILHAKTSADRGLTLAGVTLLQF 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D N+ + A+ A + +L+ V+ G + ++ +
Sbjct: 188 DPANRFYEQIQANKAELRQGYWRLEGVIVQSSGDAVRRYDEYFVSTYLGPAQIMNSLGSL 247
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ SF+++ ++F+ K+ + + E Q + P+++ AM LIAA+ SL+ R +
Sbjct: 248 ETLSFWDLPGFIAFAGKAGLP-TRQYELQHQLFLARPILMAAMVLIAATCSLKAFRFGKI 306
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ GF + + + G SG++ AA P ++ + LS +LL +EDG
Sbjct: 307 QTMVLTGLTGGFGFFIFSELSRKVGASGLVPVTVAAWGPALVALLLSATVLLYQEDG 363
>gi|269103491|ref|ZP_06156188.1| putative membrane protein [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163389|gb|EEZ41885.1| putative membrane protein [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 356
Score = 154 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 124/361 (34%), Gaps = 9/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + VP
Sbjct: 1 MFKILDWYIGRTIIGTTALTLSTLVGLSAIIKYVEQLRKVGQ-GTYDLWNALIFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +L+
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPLMLMVMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL W G+ W + FI ++ + +
Sbjct: 120 QWGAPQAQKAARDLRTFWTSGGNMLSVQSGVW----AKDGNDFIYIARVHEQKELDGINI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
K LK V + I I + + D
Sbjct: 176 WEFNGKNKLTQSVFAEKAQYNAEKGWSLKYVTVTDFAPIEIKETKYPTLDWQTTLTPDKL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S + + + +S R E F+ + P+ + M L+A S
Sbjct: 236 AIVTVKPEELSLSGVYNYVQYLKES-KQDASRYELAFWRKALQPVSIAVMMLLALSFVFG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF Y + + L PV AL P ++ ++++I +L +
Sbjct: 295 PLRSVTMGARVLSGVIFGFAFYISNEVFGPMSQVYRLPPVIGALAPSMVFLAITIYLLKR 354
Query: 358 K 358
K
Sbjct: 355 K 355
>gi|295689677|ref|YP_003593370.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295431580|gb|ADG10752.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 367
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 146/366 (39%), Gaps = 8/366 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K + + L +V +I +I +G + + + L + P
Sbjct: 4 MGMLERYVLKRSMSALVGALAVLGAMVMLIAFVDIARNVGTRADVNFFQLLYLTVLQAPA 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I + PF+ L + F LNR SEL+ RA G+S W+ + P S ++G+ T+ ++N
Sbjct: 64 TILVLAPFVFLFGTMWAFVELNRRSELIAMRAAGVSAWRFIMPAATASFVIGLLTITLLN 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE---- 177
P+ T+ + + NG + W++ + + I I A+ +
Sbjct: 124 PLTTAMTARF-ETERDHMMNGYLNNAPRGTWLRQGDDKTQIVIRARGRDMIDGSVRLRGV 182
Query: 178 --DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
++ R +A+ A + +L V E G I +S ++ +
Sbjct: 183 SLFVYTLNKKGVMDFTRRIEANEARLEPGFWRLTGVREATPGAGAIRSDSLSIPSNLDDR 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + + + + + + F + + + PL+ AM+++AA+ S
Sbjct: 243 TASERFNTPQAVALWRLPATIKRAEDAG-FSAAPFKLRLQQDLATPLLFSAMSVLAAAFS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L R + G+ GF + + + GK+ +L P AA P I+ I +L
Sbjct: 302 LRLMRLGGLAALAGSGVALGFGFFFFNELCSTLGKADVLAPSIAAWTPPIVAILAGFTLL 361
Query: 356 LQKEDG 361
EDG
Sbjct: 362 CYTEDG 367
>gi|159043738|ref|YP_001532532.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
gi|157911498|gb|ABV92931.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 80/366 (21%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + ++ + L L L+++ D E + ++ + A LA ++P I
Sbjct: 2 TLQWYFARRFVMSFLSMLGIFAGLIWMTDTVESLRSLSS-DDFGLQEAAALALLQLPATI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++IP I ++ I +F + RTSEL+++RA G S + L V+ + L+G + V+NPI
Sbjct: 61 YEVIPLIMVLATITLFLKMARTSELIVTRAAGRSAIRSLIAPVIVAGLIGGIGISVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + + S W++ + P+ I I A I D T
Sbjct: 121 VAATSRIAEETRDEVRGRATSVLALSSEGLWLRQAAPEGQIVIHAAGASLGGTILYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMD 235
+ D I R A A + L V + + + + +D
Sbjct: 181 LRFDADALPIERVAASRAELVPGAWDLTGVKVWDLTGRLNPEAGVRTSAWMQVPSDLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ +E+ + + + + P+ LVAM LI A+ +
Sbjct: 241 QIRDSFGDPSAIPIWELPAFIDQLEAAGFAALS-HRVWLHTELASPVFLVAMVLIGAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + ++V + + GF +Y + + + G++G + +AAA P + + LS+ +L
Sbjct: 300 MRHTRFGRTGLMVLFAVLLGFSMYFLKSFAQVLGEAGKIPVLAAAWFPPLAGVFLSLALL 359
Query: 356 LQKEDG 361
L +EDG
Sbjct: 360 LHQEDG 365
>gi|22124661|ref|NP_668084.1| hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45440497|ref|NP_992036.1| hypothetical protein YP_0645 [Yersinia pestis biovar Microtus str.
91001]
gi|51594885|ref|YP_069076.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
gi|108808931|ref|YP_652847.1| hypothetical protein YPA_2940 [Yersinia pestis Antiqua]
gi|108810814|ref|YP_646581.1| hypothetical protein YPN_0649 [Yersinia pestis Nepal516]
gi|145600503|ref|YP_001164579.1| hypothetical protein YPDSF_3249 [Yersinia pestis Pestoides F]
gi|153949000|ref|YP_001402495.1| permease [Yersinia pseudotuberculosis IP 31758]
gi|153997519|ref|ZP_02022619.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|162420587|ref|YP_001608340.1| hypothetical protein YpAngola_A4049 [Yersinia pestis Angola]
gi|165925751|ref|ZP_02221583.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|166010149|ref|ZP_02231047.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214265|ref|ZP_02240300.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167399516|ref|ZP_02305040.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167423672|ref|ZP_02315425.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025892|ref|YP_001722397.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186893895|ref|YP_001871007.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930455|ref|YP_002348330.1| hypothetical protein YPO3439 [Yersinia pestis CO92]
gi|229839083|ref|ZP_04459242.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896571|ref|ZP_04511738.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|229899646|ref|ZP_04514787.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901017|ref|ZP_04516141.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|270489197|ref|ZP_06206271.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294505143|ref|YP_003569205.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
gi|21957470|gb|AAM84335.1|AE013676_8 hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45435354|gb|AAS60913.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588167|emb|CAH19773.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
32953]
gi|108774462|gb|ABG16981.1| membrane protein [Yersinia pestis Nepal516]
gi|108780844|gb|ABG14902.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115349066|emb|CAL22028.1| putative membrane protein [Yersinia pestis CO92]
gi|145212199|gb|ABP41606.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289156|gb|EDM39236.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|152960495|gb|ABS47956.1| putative permease [Yersinia pseudotuberculosis IP 31758]
gi|162353402|gb|ABX87350.1| putative permease [Yersinia pestis Angola]
gi|165922363|gb|EDR39540.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165991056|gb|EDR43357.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204497|gb|EDR48977.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167052020|gb|EDR63428.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057842|gb|EDR67588.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752426|gb|ACA69944.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186696921|gb|ACC87550.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682356|gb|EEO78448.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|229687138|gb|EEO79213.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695449|gb|EEO85496.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700349|gb|EEO88381.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|262363204|gb|ACY59925.1| hypothetical protein YPD4_3021 [Yersinia pestis D106004]
gi|270337701|gb|EFA48478.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294355602|gb|ADE65943.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
Length = 358
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 131/362 (36%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + D + +
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKD---GSDFIYIQRVSGESELTGVNIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + + N +L +V E S T + +
Sbjct: 177 HFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEK 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + +S N R E + + P + M L+A S
Sbjct: 237 LGVVAMDPDSLSISGLHDYSKYLQQSGQESN-RYELSMWSKVFAPFSVAVMMLMALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GIF GF+ Y + + + P+ AL+P +L + +SI +LL
Sbjct: 296 GPLRSVPMGVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLISICLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|85713125|ref|ZP_01044158.1| Predicted permease [Idiomarina baltica OS145]
gi|85693041|gb|EAQ31006.1| Predicted permease [Idiomarina baltica OS145]
Length = 355
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 140/361 (38%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY LKT+L L+ L +I E +G +Y + A+ +P
Sbjct: 1 MFSILDRYIGATVLKTSLMSLIVLTGLSGLIRFVEQLKSVG-RGSYEVIDAALFVFYSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SEL++ +A G S + + ++++ I + +
Sbjct: 60 RDVEVFFPMAALLGGLIGMGVLASNSELIVMQAAGRSKLNIAGAVMKTAVVMMIAVIAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E G + Q G + W + + +I + +
Sbjct: 120 EWVAPPMEAKGRLIRAQEISGGSLISAQRGVWAKDGDDFINISE-----VEDTGRLNGVL 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + ++ A A+ N+ +L +VVE + + + + +ST + D
Sbjct: 175 IYDFDGQQQLETVTYAQTAVYSNESWRLSQVVETRLTQQKVIEKRLDSTVWQSSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S +I +++ SN R E + ++ P+ + M L+A S
Sbjct: 235 GVVTIKPESLSISGLIDYLTYLK-SNEQSAQRYELALWRKVLSPVTVAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ +GF + I + + V AL+P ++ S++I ++ +
Sbjct: 294 PLRETSMGARILLGVITGFAFHVSNEIFGPLAQVYQVPAVLGALLPSLVFASVAIFVMQR 353
Query: 358 K 358
K
Sbjct: 354 K 354
>gi|332991779|gb|AEF01834.1| lipopolysaccharide ABC transporter permease [Alteromonas sp. SN2]
Length = 353
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 131/360 (36%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFKILDLYIARTLLGTVTVTLSVLIGLSALIKFVEQLRKVGE-GDYDMMVAFLYVVLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++ + + ++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIIVSTMKSATIMILLVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E ++ + G S+ + W + I + +D
Sbjct: 120 EWVTPFSESKAKEIRTEAISGGSLFSSEQLVWAKDGEHFVSIGEVLSRDS-----LKDIN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ + A + +L V ++ ++ S N + D
Sbjct: 175 IFDFNDDLSLESITYAKSGNFDGSEWRLSDVDVTRFSETAVTLDNEKSMQWNSTLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S ++ + + + R E + I+ P+ + M L+A S
Sbjct: 235 GIVAVKPEALSISGLLDYVGYLANNGQ-DPSRYELALWRKILQPVSVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF + + + + P AL+P +L +++ ++L +
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFILNEVFGPLSLVYQIPPFLGALLPSLLFAAIAAIMLRK 353
>gi|254229297|ref|ZP_04922715.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262393203|ref|YP_003285057.1| hypothetical protein VEA_002430 [Vibrio sp. Ex25]
gi|151938221|gb|EDN57061.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262336797|gb|ACY50592.1| putative membrane protein [Vibrio sp. Ex25]
Length = 356
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRSFAISGGSIVSVRSGVWARDANDFIFIGKVEDDKLYALNMWRFDD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K V++ + + D + + D
Sbjct: 180 DKNLQKVIFAEEVDYQQDNNWLMRDVQITDMKN-ENVISKQDIEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV AL P ++ ++++I +L +K
Sbjct: 298 SVTMGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAIALLRRK 355
>gi|28899416|ref|NP_799021.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|153839669|ref|ZP_01992336.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
gi|260363480|ref|ZP_05776316.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|260879349|ref|ZP_05891704.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|260895692|ref|ZP_05904188.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|260900264|ref|ZP_05908659.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|28807652|dbj|BAC60905.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|149746812|gb|EDM57800.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
gi|308087431|gb|EFO37126.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|308093069|gb|EFO42764.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107540|gb|EFO45080.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|308112550|gb|EFO50090.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|328471447|gb|EGF42342.1| lipopolysaccharide ABC transporter permease [Vibrio
parahaemolyticus 10329]
Length = 356
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDVEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRSFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYALNMWRFDD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++K V++ + + + + + + + D
Sbjct: 180 DKNLEKVIFAEEVDYQQDNNWLMRDVQITNMQD-ENVISKQEMDQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + P+ AL P + +++++ +L +K
Sbjct: 298 SVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPIFGALAPSLAFLAIAVALLRRK 355
>gi|239993539|ref|ZP_04714063.1| predicted permease [Alteromonas macleodii ATCC 27126]
Length = 353
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 133/360 (36%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +
Sbjct: 1 MFKILDLYIARTLLGTITVTLSVLIGLSALIKFVEQLRKIGE-GDYDMLVAFIYVLLSLA 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++N + ++++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILLVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E + + G SD + W + + I + +D +
Sbjct: 120 EWVTPYSETKAKQIRTEAISGGSLFSSDKLVWAKDGDRFVSIGQ-----VLSQDSLKDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ + + A D L V ++ + N N + D
Sbjct: 175 IFSFNPDLSLESITHAKNGAFDGDGWWLSDVEVTKFTETNVTVDENNRMRWNSTLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S ++ +++ +N R + + + P+ + M L+A S
Sbjct: 235 GIVAVKPEALSITGLLDYVNYLE-NNDQDPSRYQLALWRKVFQPISVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF + + + L P AL+P +L +++ ++L +
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAIAGVMLRR 353
>gi|262367136|gb|ACY63693.1| membrane protein [Yersinia pestis D182038]
Length = 358
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 131/362 (36%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + D + +
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKD---GSDFIYIQRVSGESELTGVNIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + + N +L +V E S T + +
Sbjct: 177 HFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEK 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + +S N R E + + P + M L+A S
Sbjct: 237 LGVVAMDPDSLSISGLHDYSKYLQQSGQESN-RYELSMWSKVFAPFSVAVMMLMALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GIF GF+ Y + + + P+ AL+P +L + +SI +LL
Sbjct: 296 GPLRSVPMGVRVVTGIFFGFVFYVLDHVFGRLSLVYGIPPMLGALLPSMLFLLISICLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|262274978|ref|ZP_06052789.1| putative membrane protein [Grimontia hollisae CIP 101886]
gi|262221541|gb|EEY72855.1| putative membrane protein [Grimontia hollisae CIP 101886]
Length = 357
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 118/362 (32%), Gaps = 10/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +GE ++++ +P
Sbjct: 1 MFKILDLYIGRTIIATTSLCLATLVGLSAIIKFVEQLRSVGE-GSFTMMTAVQYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAVLLGALIGLGTLASSSELVVMQAAGFSKLDIGLSVLKTAMPLMLVVLALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L K G+ W FI + + +
Sbjct: 120 QWGAPDAQKAARELRAFAKSGGNVMSVRRGVW----AKDGSDFIYIARTDQQESLVGVNI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDG 236
D + + D L+ V + + + +
Sbjct: 176 WKFDDTQTLKAQVFAEQARYLDKDSWMLENVTVTHFDGPVKINETTEKQLAWKTTLTPEK 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + + ++ R E + ++ PL + M L+A S
Sbjct: 236 LSIVTVKPEELSLSGVYSYVDYLK-ASEQDASRYELALWRKVLQPLSIGVMMLLALSFVF 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF Y + L P A+ P + I +++ +L
Sbjct: 295 GPLRSVTMGARVLSGVIFGFAFYISNEVFGPMTLVYNLPPFVGAIAPSLAFIGVTLYLLN 354
Query: 357 QK 358
+K
Sbjct: 355 RK 356
>gi|270265133|ref|ZP_06193396.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
gi|270041067|gb|EFA14168.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
Length = 356
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 133/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ +YS + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSALSAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ + Q G + W + N I +
Sbjct: 120 EWVAPQGDQMARNYRAQQMYGGSLLSTKNGLWAKDGNDFIYIER-----VAGEKELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + ++ + A A + KL +V + T + D
Sbjct: 175 IYHFNDQRRLETVRYAATASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S R + + + PL + M L+A S
Sbjct: 235 LGVVALDPTSLSISGLHNYVKYLKQSGQ-EANRYQLNMWSKVFSPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV AL+P +L + +S+ +LL
Sbjct: 294 GPLRSVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
Length = 359
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/356 (18%), Positives = 146/356 (41%), Gaps = 6/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI+ RY +L+ L G + + ++D E + + S+S ++P
Sbjct: 1 MFGIVGRYLAGTWLRLFLLCQGGFLAVYLILDFMEKLGRFSK-AGASLSAILQFFLFKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ Q +PF L+ ++ L+R+SEL R+ G+SI +++ P ++ +L + ++
Sbjct: 60 EMLGQTMPFAVLMATLLALGMLSRSSELTALRSCGLSIPRIVLPILMLGLLGSLVLLVNS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + + + I ++ + AK P + T
Sbjct: 120 EFVVPKSYQQMEHIEKVVIKK--QSVNTFFRLNNIWFRSNNLILQAKVFEPLTRTLKGVT 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQ 238
+ + + R DA+ A+ + +L +V + S L++P+ + D +
Sbjct: 178 VWELSADMQPVRRMDAEQALYGSGGWELLQVRTRSFAGQGGVVASARLSVPLTLKVDDLR 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF ++ + + R T + + +P M ++ +L+
Sbjct: 238 ILDNNADNFSFRKLREYAVSLE-KGGYPAGRYRTMMHAKLALPFGAFVMVVLGIPFALKT 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R++ + V G+ GF + I ++S+G+SG+L P AA ++ + I +
Sbjct: 297 GRTSGVAMGVGAGVAIGFAYFIINAAVQSYGRSGVLPPFVAAWGANLIFVLTGIWL 352
>gi|16125935|ref|NP_420499.1| hypothetical protein CC_1690 [Caulobacter crescentus CB15]
gi|221234698|ref|YP_002517134.1| hypothetical protein CCNA_01761 [Caulobacter crescentus NA1000]
gi|13423101|gb|AAK23667.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963870|gb|ACL95226.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 368
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 71/365 (19%), Positives = 137/365 (37%), Gaps = 6/365 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K + + L +V +I +I +G + S R L + P
Sbjct: 5 MGMLERYVLKRTMGALVGALAVLSAMVMLIAFVDIARNVGTRADASFLRLLYLTILQAPA 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I + PFI L + F LNR SEL+ RA GIS W+ + P S ++G+ T+ ++N
Sbjct: 65 TILVLAPFIFLFGTMWAFVELNRRSELIAMRAAGISAWRFIMPAAASSFVIGLLTITLLN 124
Query: 122 PIATSGEKIGIDLIQQWKDNG-----DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
P+ T+ + + + + +
Sbjct: 125 PLTTAMTAKFETERDRTMNGYLKEAPKGTWLRQGDDKTQIVIRARARELVDGSVRLRGVS 184
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++ R +A+ A + +L V E G I +S ++ +
Sbjct: 185 LFVYTLNAKGVMDFTRRIEANEARLEPGFWRLSGVREATPGAGAIRSDSLSIPSNLDDRT 244
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + + + + F + + + PL+ AM+++AA+ SL
Sbjct: 245 ASERFNTPQAVALWRLPATIQRTADAG-FSAVPFKLRLQQDLATPLLFAAMSVLAAAFSL 303
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R ++ G+ GF + + + G++ +L P AA P + + + +L
Sbjct: 304 RLMRLGGLAMLAGSGVALGFGFFFFNELCSTLGRADVLAPFVAAWTPPTVALLVGFTLLC 363
Query: 357 QKEDG 361
EDG
Sbjct: 364 YTEDG 368
>gi|91228858|ref|ZP_01262763.1| putative permease [Vibrio alginolyticus 12G01]
gi|269966357|ref|ZP_06180443.1| Predicted permease [Vibrio alginolyticus 40B]
gi|91187596|gb|EAS73923.1| putative permease [Vibrio alginolyticus 12G01]
gi|269829034|gb|EEZ83282.1| Predicted permease [Vibrio alginolyticus 40B]
Length = 356
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRAFAISGGSIVSVRSGVWARDANDFIFIGKVEDDKLYALNMWRFDD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K V++ + + D + + D
Sbjct: 180 DKNLQKVIFAEEVDYQQDNNWLMRYVQITDMEN-ENVISKQDIEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV AL P ++ ++++I +L +K
Sbjct: 298 SVTMGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAIALLRRK 355
>gi|59711022|ref|YP_203798.1| inner membrane protein [Vibrio fischeri ES114]
gi|59479123|gb|AAW84910.1| conserved inner membrane protein [Vibrio fischeri ES114]
Length = 358
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 121/359 (33%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVG-RGTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + ++ + K F
Sbjct: 120 QWGAPQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADDFIYLARVENKEKLYGVTVWQFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
A + I K +S + + D
Sbjct: 180 DNQDLNNVIFARTATYQAAQDDWKMNDVSITQMKDKAVISEKKVDSLDWSTTLTPDKLAV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + +S + +++ S R E F+ + P+ + M L+A S
Sbjct: 240 VTVKPEEQSLTGLYDYVNYLKDS-ELDASRYELAFWRKALQPISVAVMMLLALSFVFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +GF Y + + P+ AL P ++ +++++ +L +K
Sbjct: 299 RSVTMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVTVGLLNRK 357
>gi|261253952|ref|ZP_05946525.1| putative membrane protein [Vibrio orientalis CIP 102891]
gi|260937343|gb|EEX93332.1| putative membrane protein [Vibrio orientalis CIP 102891]
Length = 356
Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 128/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGQ-GTYDLIQALLYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIMVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL G W + +N I + ++W
Sbjct: 120 QWGAPQAQKAARDLRAISTSGGALLSVRTGVWARDANDFIFIGKVEDDTIYGMNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ V+L ++V+ + + + D
Sbjct: 180 NKRLESVVHAKRVDYVSDNTWMMKDVQLTEMVD-EIEISKHSLPEYSWTTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +S+ ++ R E F+ + P + M L+A S R
Sbjct: 239 TVKPEELSLGGLYDYVSYLK-ASEQDPARYELAFWRKVTQPFSIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV A++P I+ +++++++L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAVMPSIVFLTIALMLLRRK 355
>gi|145219259|ref|YP_001129968.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145205423|gb|ABP36466.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 360
Score = 152 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 58/362 (16%), Positives = 138/362 (38%), Gaps = 5/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F+ ++KT ++ + + L +I++ E + + + +P
Sbjct: 1 MKILDRYIFQQFVKTFVFTTITFVSLFILINMVENLGDFMDRK-LLFTDIVLYYLRAIPD 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P +L+ +I+V L +SEL R+ G+S+ QLL PF++G I++ ++
Sbjct: 60 TILITSPVSSLLASILVAGRLAGSSELPAIRSAGVSMRQLLYPFLLGGIIISTLNIINSF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + + + I P + + E
Sbjct: 120 WLAPIAAVHNHAFERDHLGKSRRNGAAEGSNLHIIEPGSRVVTIGRLNTSFTGAKEVSIE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
+ ++ N + L+ + ++ + + +L + + +
Sbjct: 180 EFSGTGLRGRIDAESMRYDTGNKEWTLQNAAQRRFTPGGEEYQARPALSLPLSLTLKSLA 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + F + + ++ + R + + I +P + + LI +S +
Sbjct: 240 ELNLRPDEMQFIQHWQYLAEKKHAGFAGLERTMVKLHTKIAVPFASLIIILIGVPLSAKK 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +F+GF+ + + +FG +G++ P+ AA +P +L +++ I
Sbjct: 300 KR-GGLATEIGISLFAGFLFLGLQKTIATFGYNGVVNPMLAAWLPNLLFLAIGYGIYRYS 358
Query: 359 ED 360
D
Sbjct: 359 PD 360
>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 353
Score = 152 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 138/360 (38%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L TT L + L +I E +G +Y ++ AV +P
Sbjct: 1 MIKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVG-RGSYDMTVAAVYVFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++
Sbjct: 60 RELEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E ++ Q G SD + W + + I K D +
Sbjct: 120 EWVAPVSETKAKEIRTQAISGGSLFSSDRLVWAKDGDNFVSIGEVVDKD-----TLRDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF 237
D + + A+ A + +L V ++ I + D
Sbjct: 175 IYEFDNELYLRQITTAESATYQDKTWELSHVQSTEFSDNRIQVQDAADGAWASSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S +I +++ +N ++ R + ++ P+ + M L+A S
Sbjct: 235 GVVTVKPEALSIRGLIDYVNYLE-NNSQNSERYRLALWRKVLQPISVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF + + S + P A++P ++ +SI +L +
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSVVFTGISIHLLRR 353
>gi|322834555|ref|YP_004214582.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
gi|321169756|gb|ADW75455.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
Length = 356
Score = 152 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 135/362 (37%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ YS + + VP
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I +
Sbjct: 120 EWVAPQGEQMARNYRAQQMYGGSLLSTQNGVWAKDGHDFIYIER-----VAGEKELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+++NK+ + A A N + KL +V E S T + D
Sbjct: 175 IYHFNEENKLQSVRYASSATFDNGEWKLSQVDESDLTDQLQITGSQTLTGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + + +S R + + I PL + M L+A S
Sbjct: 235 LGVVALDPDALSISGLHNYVKYLKQSGQ-EAKRYQLNMWSKIFSPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + P+ AL+P L +S+ +LL
Sbjct: 294 GPLRSVPMGVRVVTGICFGFLFYVLDQIFGPLSLVYSIPPILGALLPSGLFFVISMFLLL 353
Query: 357 QK 358
+K
Sbjct: 354 KK 355
>gi|319408319|emb|CBI81972.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 363
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 120/360 (33%), Positives = 195/360 (54%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y+KTT YF+L IL +ID E ++ LP+Y+ +++A RVP I+
Sbjct: 5 TLGRYFFVRYIKTTCYFVLSIFILALLIDFTENSGRLASLPHYTAKGALLISALRVPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L + + +LN+ ELV++R+IG+S WQ L P +G+ L G+F++L INP+
Sbjct: 65 QQLFPFIALFSAMTMLISLNKKFELVVARSIGVSAWQFLIPACLGAFLFGLFSILFINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G +I +W+ N + + IPW+ IGA+ I + D T
Sbjct: 125 AAWGSSQAEKMIAEWRSNNVQTSINKNRIPWLTQHTNLGTTTIGARSITQQGLSLIDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + A A + ND L Y+ G +P + +K + ++
Sbjct: 185 VQYNDNATVKNWIHAKQATLTNDAWLLTNGTIYKTGYVPEKFTEFRIKTNLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ FY++ +K+S + + + + LI +P +LVAMTLIAA+VSL+F+R
Sbjct: 245 ADPATIPFYKLPRKISAARSFG-YSANKFDMYLQSLIALPALLVAMTLIAATVSLKFTRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q + ++ G+ +GFMLY I ++++FG +G + PV AA PV++ + + LL KEDG
Sbjct: 304 GQSKALILGGVIAGFMLYVISVLVQAFGNAGYIPPVIAAWTPVVIALFFGVSFLLHKEDG 363
>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 353
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 140/360 (38%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L TT L + L +I E +G +Y ++ AV +P
Sbjct: 1 MIKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVG-RGSYDMTVAAVYVFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++
Sbjct: 60 RELEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E ++ Q G SD + W + + I K + D +
Sbjct: 120 EWVAPISETKAKEIRTQAISGGSLFSSDRLVWAKDGDNFVSIGEVVDK-----NNLRDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF 237
D + A+ A +D +L V ++ I + + D
Sbjct: 175 IYEFDNDLYLRKITTAEAANYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSSSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S +I +++ +N ++ R + ++ P+ + M L+A S
Sbjct: 235 GVVTVKPEALSIRGLIDYVNYLE-NNSQNSERYRLALWRKVLQPISVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF + + S + P A++P I+ +SI +L +
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSIVFTGISIHLLRR 353
>gi|197335786|ref|YP_002155171.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
gi|197317276|gb|ACH66723.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
Length = 358
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 122/359 (33%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVG-RGTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + ++ + K F
Sbjct: 120 QWGAPQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADDFIYLARVENKEKLYGVTVWQFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
A + + I K +S + + D
Sbjct: 180 DNQELNNVIFARTATYQAAQDDWEMNDVSITQMKDKAVISEKKVDSLDWSTTLTPDKLAV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + +S + +++ S R E F+ + P+ + M L+A S
Sbjct: 240 VTVKPEEQSLTGLYDYVNYLKDS-ELDASRYELAFWRKALQPISVAVMMLLALSFVFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +GF Y + + P+ AL P ++ +++++ +L +K
Sbjct: 299 RSVTMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVTVGLLNRK 357
>gi|323492970|ref|ZP_08098108.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
LMG 20546]
gi|323312801|gb|EGA65927.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
LMG 20546]
Length = 356
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 129/358 (36%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++GE Y + + + +P
Sbjct: 1 MFKILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGE-GTYDLIQALLFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I + ++W
Sbjct: 120 QWGAPQAQKMARDLRAFATSGGAILSVRTGVWARDANDFIFIGKVEDDKIYAMNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + V+L ++V+ + + + D
Sbjct: 180 EKRLESVVHAATVEYVADNTWKMKDVQLTEMVD-EVEISKQSLPEYSWTTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + P + M L+A S R
Sbjct: 239 TVKPEELSLGGLYDYVTYLK-ASEQDPSRYELAFWRKVTQPFSIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV A++P ++ +++++++L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAVMPSLVFLTIALMLLRRK 355
>gi|157368809|ref|YP_001476798.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
gi|157320573|gb|ABV39670.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
Length = 356
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 131/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTALSAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ + Q G + W + + +
Sbjct: 120 EWVAPQGDQMARNYRAQQMYGGSLLSTKNGLWAKDG-----TDFIYIERVAGEKELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + ++ + A A + KL +V + T + D
Sbjct: 175 IYHFNDQRRLETVRYAASASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S R + + + PL + M L+A S
Sbjct: 235 LGVVALDPTSLSISGLHNYVKYLKQSGQ-EANRYQLNMWSKVFSPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV AL+P +L + +S+ +LL
Sbjct: 294 GPLRSVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|49474100|ref|YP_032142.1| hypothetical protein BQ04620 [Bartonella quintana str. Toulouse]
gi|49239604|emb|CAF25961.1| Hypothetical transmembrane protein [Bartonella quintana str.
Toulouse]
Length = 364
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 186/361 (51%), Gaps = 4/361 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLK T YF +L F+ID E +++ LP+Y+ +++ R+P I+
Sbjct: 5 TLGRYFFVRYLKMTCYFFGSIFVLAFLIDFTENSSRLSYLPSYTAKDAFLISVLRIPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPFI L + + +LNR ELV++R+IG+S WQ L P G+ L G+F++L++NP+
Sbjct: 65 QQLIPFIALFSAMAMLISLNRKCELVVTRSIGVSAWQFLMPACFGAFLFGLFSILLVNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNG---DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A G + +W+ N + IIPW+ IGAK I + D T
Sbjct: 125 AAWGFSQAEKMTTEWRSNNVLTSFHNTRIIPWLTQRTNSDRTTIGAKSITDQGLSLIDAT 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + + + A + N L Y+ G P + +K + +
Sbjct: 185 FVQYNDNATVKNWINTRKATLTNGVWLLTNGTIYKIGHPPEKFTEFQIKTNLKPEFLTER 244
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A+ FY++ KK+ + + + LI +P +L+AMTLIAA+VSL F+R
Sbjct: 245 LANPATIPFYQLPKKIMIARSFG-YSANNFDMYLQSLIALPALLIAMTLIAATVSLNFTR 303
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q ++ G+ +GF LY I ++++FG +G + P+ AA PVI+ + L I LL KED
Sbjct: 304 FGQSGTLIFGGVIAGFTLYVISVLVQAFGNAGYMPPIIAAWTPVIIALFLGISFLLHKED 363
Query: 361 G 361
G
Sbjct: 364 G 364
>gi|165936803|ref|ZP_02225370.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|167420748|ref|ZP_02312501.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|165915452|gb|EDR34062.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|166961554|gb|EDR57575.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
Length = 358
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 131/362 (36%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + D + +
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKD---GSDFIYIQRVSGESELTGVNIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + + N +L +V E S T + +
Sbjct: 177 HFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTSEK 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + +S N R E + + P + M L+A S
Sbjct: 237 LGVVAMDPDSLSISGLHDYSKYLQQSGQESN-RYELSMWSKVFAPFSVAVMMLMALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GIF GF+ Y + + + P+ AL+P +L + +SI +LL
Sbjct: 296 GPLRSVPMGVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLISICLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|78186277|ref|YP_374320.1| hypothetical protein Plut_0389 [Chlorobium luteolum DSM 273]
gi|78166179|gb|ABB23277.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 360
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 132/362 (36%), Gaps = 5/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F+ ++KT ++ L + L +I + E + + N A +P
Sbjct: 1 MKILDRYIFRQFVKTFIFTSLAFVALFMLIHMVENLDDFMDK-NQGFEAIAQYYLFAIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P +L+ I+V L +SEL R+ G+S+ QLL PF++G +++ +
Sbjct: 60 TILITSPVSSLLAAILVAGKLAVSSELPAIRSAGVSMGQLLYPFLLGGMIISTINLTNSF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + + + + + + I P I + E
Sbjct: 120 WIAPAATLRNNNFELTELGHQRRDEEGGNSNLHILEPGNRIITLGSLNPDMSSAREVSIE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
K D L+ E + + + + + +
Sbjct: 180 QFSQKGIVSRSDADGMRYNPEKKAWVLENAAERMFEDGSERFWTEPMLPVQLHLSLQSLA 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + +S + R+ + + + +P + + +I +S +
Sbjct: 240 ELNLRPDEMNIARHWQYLSEKKHAGFAGLERSSVKLHTKLSLPFASLIIIIIGVPLSAKK 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +F+GF+ + + +FG +G++ P+ AA +P +L + + +I
Sbjct: 300 KR-GGLAAEIGISLFAGFLFLGLQKTIATFGYNGVMPPMLAAWLPNLLFLGVGYVIYRYS 358
Query: 359 ED 360
D
Sbjct: 359 PD 360
>gi|282856200|ref|ZP_06265483.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
piscolens W5455]
gi|282585959|gb|EFB91244.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
piscolens W5455]
Length = 368
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 134/365 (36%), Gaps = 8/365 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L R+ + + L+ ++ +++ L + S+ L +P
Sbjct: 4 FRTLDRFIMRELMGPFLFGVMAFTLIMVAGGLLFKLADLIIEQGVSLGVAGRLFIYELPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F ++ SE+V +A GIS ++ P +V ++ + + ++ +
Sbjct: 64 VVVLTLPMSCLLASLLGFSKMSANSEIVALKAAGISFSRIGRPVLVAALGVTMLSLALNE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE--DF 179
+ G+ ++++ +++ S+P + I D
Sbjct: 124 TVVPLGKIAAQNVMRYEVAREKPALLKEQVFLRSSDPSSEGLRRIVYINKLYARSGTMDD 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKK-----VVEYQYGRIPIDKNSTTLNIPIKM 234
+ K ++ A + L V + + L I +
Sbjct: 184 VVVQEFKGADLVRLTTARKGTWVDGVWYLDDGDVFEVKGRDTVELTLHFKRQALPIRLTP 243
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + S E+IK + F+ + +P V + LI A++
Sbjct: 244 QQISRSTAKPDDMSCLELIKYIEILRAQGKSLEPLW-VAFHLRLAVPWACVILALIGAAL 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + I F+ Y ++++ +S G++G + PV A +P IL + ++L+
Sbjct: 303 GVRPMRKGGASVGFGQSILIVFVYYVVMSMGRSLGQAGHIPPVLGAWLPNILFFAGALLL 362
Query: 355 LLQKE 359
+ +
Sbjct: 363 ARRAD 367
>gi|258645769|ref|ZP_05733238.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
gi|260403140|gb|EEW96687.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
Length = 361
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 127/360 (35%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L L+ + + D S + + +P
Sbjct: 1 MRILDKYILKEFLGPFLFGVAAFTAIFLGADTLLKIADYVTKYGASSTAALKIFILALPR 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ ++ L+ +SEL++ R G S +L+ P + + L+ + V
Sbjct: 61 IIVYTFPMAVLLGALMATSRLSGSSELIVMRTSGQSFSRLVMPIFILTFLISLCAVAFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +I ++ + + + + + +
Sbjct: 121 YVVPWTNRKYEQVINIEIKRNLNPGVTDHVILRDVQNGKIAHLLYARRYNPENKKLENIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
I + +I ++A A+ + K ++ Y G + + + +
Sbjct: 181 IQEFQNEAVIRVENAPNAVWKDGKWFMENGTIYDLGEDGISRTMRFKNQFIPYGQSPETI 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
QK + + + E+ + ++ + + +P L+ A + ++
Sbjct: 241 QKEHKDYDEMTIRELFT-ARKAYEAAHEDATAIVMEIHRRFSLPFASFVFGLVGAPLGVQ 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ I + F+ Y ++T +++ GK ++ VAA +P ++ + ++ ++ +
Sbjct: 300 RERSSS-SIGFGLSVVIIFVYYAVMTFLEALGKGHVISAVAAVWLPNLIALICAVYLIKR 358
>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
Length = 360
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 191/359 (53%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 4 TLGRYFFFRYVTITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G +V +INP+
Sbjct: 64 LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGFVSVGLINPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + + Q + S D PW++ D IGA+ IL + D
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSTGDTIIGARAILNQGLEMSDAVFF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+D++ I+ RKDA A + + +L+ V ++ G I S + +K + Q+
Sbjct: 184 VLDQQGNIVERKDAAHAYLRDGYWELQDVKTFRNGTIQPS-ASDRVPTNLKPEFVQERLA 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + FY++ K+ + + N QF L+ +P +LVAMTLIAA+VS+ F+R
Sbjct: 243 RPETIPFYDLPGKIEVARSFGLKANA-FAMQFDSLVALPFLLVAMTLIAATVSMRFARMG 301
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + LL KEDG
Sbjct: 302 QSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAIAAWVPVVVAMFFGVTFLLYKEDG 360
>gi|56479503|ref|YP_161092.1| hypothetical protein ebA7171 [Aromatoleum aromaticum EbN1]
gi|56315546|emb|CAI10191.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 359
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 113/359 (31%), Gaps = 2/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + T LL + L D + +G+ Y + + +P
Sbjct: 1 MNRVLTRYLAREIFGATAMVLLAFLGLFVFFDFINELDVVGK-DGYELHHALIFVVMLIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ + L R SE+ + R G+S +L ++ + T ++
Sbjct: 60 GRVYELLPVAVLIGTLYALTTLARHSEITVMRVSGMSTPAMLRALGGIGVIFVVLTFVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ + + W++ ++ E DF
Sbjct: 120 EYVAPPAEQAAQQWRLTATHSAVSNQLRSGLWVKDGLRVVNVRTVLPDRSMEKVRIYDFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D A +++ +D T +
Sbjct: 180 AQHALLSISEAATGRYDAAQQGWLLEGVRQTRFLGDHTDVVDLTELTWRSDLTPQVLSVL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + +S + N + R E + +V P + M +A S R
Sbjct: 240 MVVPERMSVTTLFAYISHLRE-NRQNADRYEIALWKKLVYPFAALVMMALALPFSFTHDR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ V G+ G + + + S G P AAL P L ++ + +L+ E
Sbjct: 299 MGGVSMKVFLGVMLGIGFHLLNGLFSSLGVINSWQPALAALTPSALFLAAAAGMLVWVE 357
>gi|153834586|ref|ZP_01987253.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
gi|148869029|gb|EDL68074.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
Length = 356
Score = 151 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+DK V++ + + D + + D
Sbjct: 180 DKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMEN-ENVITKRDVEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAVSLLRRK 355
>gi|163803713|ref|ZP_02197573.1| putative permease [Vibrio sp. AND4]
gi|159172496|gb|EDP57361.1| putative permease [Vibrio sp. AND4]
Length = 356
Score = 151 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGTYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSMRAGVWARDANDFIFIGKVEDDKLYNLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+DK V++ + + D + + D
Sbjct: 180 DKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMEN-ENAITKRDIEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +S+ + R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVSYLK-ATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV AL P ++ ++++I +L +K
Sbjct: 298 SVTMGARILSGVVAGFSFYISSEFFGPLSLVYGIPPVFGALAPSLVFLAIAIALLRRK 355
>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
15444]
Length = 373
Score = 151 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/368 (21%), Positives = 151/368 (41%), Gaps = 12/368 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L + L ++ + +ID+ E +G ++ L+ ++P+II+
Sbjct: 7 IQRYILRECLSGLVLVLGILLLAILMIDVVEQMRTIGGDVEITLLDALRLSLMKLPMIIE 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF L ++ F LNR SEL I RA G+S W+ L P +V + LGIF+ L +NP+A
Sbjct: 67 QTLPFALLAATMMAFTRLNRRSELSIIRASGLSAWRFLTPVIVLGVALGIFSSLALNPLA 126
Query: 125 TSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED---- 178
+ + Q ++ W++ + I A+++ D
Sbjct: 127 ARLSQSFEAERARLLDVGREVVQVAETGVWLRQGDDSSQYVIHARRVEDGGRTLLDVKII 186
Query: 179 -----FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + R DA+ A++ +L+ +VE + P + + + +
Sbjct: 187 EEQRLYNGRQPTNDFAFVRRIDAEKAVLNEGFWQLENLVENLPNQAPERRATLAIPTSLD 246
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F+E+ + + + + R + + L P++ AM LI A
Sbjct: 247 AVRLLDEYASPNTVGFWELPRFIFETRAAG-LDTSRYTMRLFTLTATPVLFTAMALIGAL 305
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
L R ++A G+ + LY S G +G V AA P + + +S+
Sbjct: 306 ACLRLQRLGGTSRLLATGVLAAIGLYFFTQFSSSLGSTGAAPAVVAAWSPPLFVLFVSLA 365
Query: 354 ILLQKEDG 361
+ +EDG
Sbjct: 366 FIAYREDG 373
>gi|254436833|ref|ZP_05050327.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
gi|198252279|gb|EDY76593.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
Length = 364
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 152/366 (41%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + T G +L+ +IDL E + G S+ L+ ++P ++
Sbjct: 2 ILHRYFARRFAWTFTATFGGFFVLMLLIDLVEQLRRYG--GEASLGDMLQLSLLKLPSLL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + F L R+SEL++SRA G S + L ++ ++++G T+ V NP+
Sbjct: 60 YDILPLIMVLATVATFLGLARSSELIVSRAAGRSALRALVAPLIVTVIIGAITIGVFNPL 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + + S+ W++ + I A + +D T
Sbjct: 120 VAATSKEFEARKTTLRSDAPSVLAISENGLWLRQGDDNSQTVIRAGGANLDGTQLQDVTF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM------D 235
I K R +A A + L + + ++ T++ +++ D
Sbjct: 180 IRFSKTGHPTRRIEAATANLTIGAWDLTDAKVWPLVGNRVAESVATIHTTLRIPSTLTAD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +S + +E+ + + F R + + P L+AM LI A +
Sbjct: 240 EIRDSFGVPSSIAIWELPAFIDRLEVAG-FSATRHQVWLQMELAQPAFLLAMVLIGAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + ++V I F L+ + + G++G + AA P + I+ S+ +L
Sbjct: 299 MRHQRGGRTGVMVLAAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAAIAGSLGLL 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHLEDG 364
>gi|156975867|ref|YP_001446774.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
gi|156527461|gb|ABU72547.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
Length = 356
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+DK V++ + + D + + D
Sbjct: 180 DKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMEN-ENVITKRDVEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +S+ + R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVSYLK-ATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV AL P ++ ++++I +L +K
Sbjct: 298 SVTMGSRVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAISLLRRK 355
>gi|258622809|ref|ZP_05717827.1| Predicted permease [Vibrio mimicus VM573]
gi|258584997|gb|EEW09728.1| Predicted permease [Vibrio mimicus VM573]
Length = 356
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +L ++V + + D
Sbjct: 180 HKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVN-EIEISKDTLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E F+ + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLAIALGLLGRK 355
>gi|262166530|ref|ZP_06034267.1| putative membrane protein [Vibrio mimicus VM223]
gi|262026246|gb|EEY44914.1| putative membrane protein [Vibrio mimicus VM223]
Length = 356
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMVVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +L ++V + + D
Sbjct: 180 HKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVN-EIEISKDTLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E F+ + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355
>gi|269963273|ref|ZP_06177605.1| Predicted permease [Vibrio harveyi 1DA3]
gi|269831988|gb|EEZ86115.1| Predicted permease [Vibrio harveyi 1DA3]
Length = 356
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVG-RGAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I L ++W
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+DK V++ + + D + + D
Sbjct: 180 DKNLDKVIFAEEVDYQQDNNWLMRYVQITDMEN-ENVITKRDLEQMEWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAVSLLRRK 355
>gi|90580730|ref|ZP_01236533.1| putative permease [Vibrio angustum S14]
gi|90437998|gb|EAS63186.1| putative permease [Vibrio angustum S14]
Length = 357
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 118/358 (32%), Gaps = 2/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + N + + F
Sbjct: 120 QWGAPQAQKMAREYRSAWVYGGSVIAAQNGVWAKNDNSFIYMGRVHDLNKVDVVNIWQFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ R D A + + + + D
Sbjct: 180 NKGQLDDVTSAKRASYDKAKGWTMHDVTITDMTGSNQLTNSHIANKHWETTLTPDKLAVV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + P+ + M L+A S R
Sbjct: 240 TVKPEELSLSGLYHYVNYLKET-KQDASRYELAFWRKALQPVSIAVMMLLALSFVFGPLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ GF Y + L P+ AL P + + ++I +L +K
Sbjct: 299 SVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPILGALGPSLAFLFITIYLLRRK 356
>gi|258591110|emb|CBE67405.1| putative Permease YjgP/YjgQ [NC10 bacterium 'Dutch sediment']
Length = 362
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 124/361 (34%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K +L+ + L+ + L ++DL + ++ ++ R+P
Sbjct: 6 MRILDRYLAKEFLRICAFSLVIFLALSVIVDLFDRLSRFLDVSGV---VVIQYYIYRLPW 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P L+ + + R +EL+ + +SI++++ P +V +++ +++
Sbjct: 63 FGFQVMPVAVLLAALFSLGKMARHNELLAMKMGHLSIFRIVVPPLVLGLVVSFAALILGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + +D + + + + + T
Sbjct: 123 SIVPRMNERALDAYRVKVQKVSPFQRTKNNDIWYRAKGNRFL-HISLLEAASGSIRGLTV 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ R DA A + + +L+ + TL + K +
Sbjct: 182 FELSPDFRLARRIDAKEARWQDGQWRLQNGEISRTKPDGTFRVDPFTHLTLYLEEKPEDL 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ + + K+ + + R + + M I + +L
Sbjct: 242 AHVVREAEEMTSSELREYIERLAKAGV-SSVRYQVDLAAKGSTAFTNLVMAFIGIAFALR 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + + S G+ +L P+ AA +P +L + + +L+
Sbjct: 301 TGKRGVMAWT-GACVVAAVCYSILNSFSISLGRGDVLPPLVAAWLPNVLFTTAGLASVLR 359
Query: 358 K 358
Sbjct: 360 I 360
>gi|294637822|ref|ZP_06716094.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
gi|291089021|gb|EFE21582.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
Length = 356
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 142/362 (39%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + +P
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + N I + + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAKDGNQFIYISQ-----VVNDRTLAGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
T++ + K+ + A A + KL +V E S T + D
Sbjct: 175 IYTLNDQRKLTSLRYATAATFDGKQWKLTQVEESNLTNPEQITGSRTLTGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S N R + + I PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYHYVKYLQQSGQESN-RYQLNLWSKIFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV A++P L +++SI +LL
Sbjct: 294 GPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLAISIYLLL 353
Query: 357 QK 358
++
Sbjct: 354 RR 355
>gi|229527564|ref|ZP_04416956.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
gi|229335196|gb|EEO00681.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
gi|327484987|gb|AEA79394.1| Predicted Permease [Vibrio cholerae LMA3894-4]
Length = 356
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + L ++V + D
Sbjct: 180 NKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLTGLSDYVHYLK-ASEQDTSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355
>gi|229521564|ref|ZP_04410982.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
gi|229341158|gb|EEO06162.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
Length = 356
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + L ++V + D
Sbjct: 180 NKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLTGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355
>gi|15642495|ref|NP_232128.1| hypothetical protein VC2499 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|227082618|ref|YP_002811169.1| putative Inner membrane protein [Vibrio cholerae M66-2]
gi|229507443|ref|ZP_04396948.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
gi|229509632|ref|ZP_04399113.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
gi|229516757|ref|ZP_04406203.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
gi|229606949|ref|YP_002877597.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
gi|254851044|ref|ZP_05240394.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744522|ref|ZP_05418474.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|298500670|ref|ZP_07010474.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9657080|gb|AAF95641.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|227010506|gb|ACP06718.1| putative Inner membrane protein [Vibrio cholerae M66-2]
gi|229345820|gb|EEO10792.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
gi|229353106|gb|EEO18045.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
gi|229354948|gb|EEO19869.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
gi|229369604|gb|ACQ60027.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
gi|254846749|gb|EET25163.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738047|gb|EET93440.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297540839|gb|EFH76896.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 356
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + L ++V + D
Sbjct: 180 NKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLTGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355
>gi|147674275|ref|YP_001217997.1| hypothetical protein VC0395_A2081 [Vibrio cholerae O395]
gi|153215714|ref|ZP_01950095.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153831207|ref|ZP_01983874.1| putative membrane protein [Vibrio cholerae 623-39]
gi|229513426|ref|ZP_04402890.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
gi|229524482|ref|ZP_04413887.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
VL426]
gi|254291417|ref|ZP_04962209.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|297581346|ref|ZP_06943269.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|124114632|gb|EAY33452.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|146316158|gb|ABQ20697.1| putative membrane protein [Vibrio cholerae O395]
gi|148873314|gb|EDL71449.1| putative membrane protein [Vibrio cholerae 623-39]
gi|150422607|gb|EDN14562.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227014389|gb|ACP10599.1| putative Inner membrane protein [Vibrio cholerae O395]
gi|229338063|gb|EEO03080.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
VL426]
gi|229349303|gb|EEO14259.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
gi|297534184|gb|EFH73022.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 356
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + L ++V + D
Sbjct: 180 NKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLTGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355
>gi|262170558|ref|ZP_06038236.1| putative membrane protein [Vibrio mimicus MB-451]
gi|261891634|gb|EEY37620.1| putative membrane protein [Vibrio mimicus MB-451]
Length = 356
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +L ++V + + D
Sbjct: 180 HKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVN-EIEISKETLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E F+ + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355
>gi|240850231|ref|YP_002971624.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
gi|240267354|gb|ACS50942.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
Length = 363
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLK T YF +L +ID E ++ +P+++ L+ R+P I+
Sbjct: 5 TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLSSIPHHTAKDAFFLSVLRIPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+INP+
Sbjct: 65 QQLIPFIALFSAMATLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G + +W++N + I W+ IGAK I + D T
Sbjct: 125 AAWGFSQAEKKMTEWRNNNVLTPLHNTDIHWLTQRTNLGRTTIGAKFITDQGLSLLDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + A + N L Y+ G P + +K + +
Sbjct: 185 VQYNDNATVKNWINTPKATLTNGSWLLTNGTIYKIGHPPEKFTVLQIKTNLKPEFLTERL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ FY++ KK+ + + + F LI +P +LVAMTLIAA+VSL F+R
Sbjct: 245 ANPATIPFYQLPKKIMIARSFG-YSANNFDMYFQSLIALPALLVAMTLIAATVSLNFTRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I LL KEDG
Sbjct: 304 GQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFLLHKEDG 363
>gi|253686793|ref|YP_003015983.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753371|gb|ACT11447.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 358
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 135/363 (37%), Gaps = 11/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + FI +++ + +
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLW----AKDGNDFIYIERVAGDKELSGVNI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMD 235
D + R A + + +L +V E S T + D
Sbjct: 176 YHFDDSNKLLSVRYAASAEFEDDRNVWRLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPD 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + S + + +S + R + + I P+ + M L+A S
Sbjct: 236 KLGVVALEPDALSIRGLHNYAKYLKQSGQESS-RYQLNMWSKIFAPVSVAVMMLMAVSFI 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + GI GF+ Y + I + + P+ A++P + + +S+ +L
Sbjct: 295 FGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLCISVALL 354
Query: 356 LQK 358
L++
Sbjct: 355 LKR 357
>gi|269140437|ref|YP_003297138.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
gi|267986098|gb|ACY85927.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
gi|304560230|gb|ADM42894.1| Putative inner membrane protein [Edwardsiella tarda FL6-60]
Length = 356
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 142/362 (39%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + +P
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + N I + + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAKDGNQFVYIAQ-----VVNDRTLGGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
T++ + K+ + A A + KL +V E + S T + D
Sbjct: 175 IYTLNAQRKLTSLRYAASATFDGKQWKLAQVEESNLTDPKMITGSRTLSGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S + R + + I PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYHYVKYLKQSGQESS-RYQLNLWSKIFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV A++P L + LS+ +LL
Sbjct: 294 GPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLL 353
Query: 357 QK 358
++
Sbjct: 354 RR 355
>gi|262401790|ref|ZP_06078355.1| putative membrane protein [Vibrio sp. RC586]
gi|262351762|gb|EEZ00893.1| putative membrane protein [Vibrio sp. RC586]
Length = 356
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVDNEQLTGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + +L ++V + D
Sbjct: 180 NKKLSTVIFAERVDYVGNNEWLMKDAQLTRLVS-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355
>gi|315500013|ref|YP_004088816.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
gi|315418025|gb|ADU14665.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
Length = 379
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 3/359 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y L L+ ++F+ID EI +G+ + S + L + P II
Sbjct: 22 LTTYIITRCLMAIGTALVVVSSIIFLIDYVEISKSLGQRGDLSSLQIVGLLMLKSPNIIL 81
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L + F LNR SEL+ RA G+S W+ + P + +LG TV V++P A
Sbjct: 82 VLLPFAFLFGTLSAFVGLNRRSELIAMRAAGMSAWRFVLPAAGMAAILGALTVTVLSPAA 141
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-- 182
T Q + + K+ I Q QQ + ++ I F +
Sbjct: 142 TVLADQYDRFAAQQSQSDTRAKTGEIYLRQGDGKQQTVIHAREQSEDGRLIDASFWTFSL 201
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + R DA A++ +LK + G + N+ ++ + +
Sbjct: 202 DEAEIPRFLTRIDASEAVLRPGTWQLKSARVSKPGETTLYYNTLSIGSNLSPERAFNRFA 261
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S +F+++ ++ S F + L+ PLM AMT + A+ SL R
Sbjct: 262 APQSTNFWQLPGTIAQIESSG-FSAAGYVLRLNQLLATPLMFAAMTALGAAFSLRLMRIG 320
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ GI GFM++ + + S GK+ ++ A ++ +L+ EDG
Sbjct: 321 GLARLTLSGIVLGFMVFFLNQLCGSLGKAEVIPAFLAGWATPFAAFLTAMTLLVYTEDG 379
>gi|50119364|ref|YP_048531.1| putative permease [Pectobacterium atrosepticum SCRI1043]
gi|49609890|emb|CAG73325.1| putative permease [Pectobacterium atrosepticum SCRI1043]
Length = 358
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 128/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N I F
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGNNFIFIERVTGDKELSGVSIYRFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + + ++ + +I + S + D
Sbjct: 180 DQNKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + S + + +S N R + + I P+ + M L+A S
Sbjct: 240 VALEPDALSIRGLHNYAKYLKQSGQESN-RYQLNMWSKIFAPVSVAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + I + + P+ A++P + + +S+ +LL++
Sbjct: 299 RSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKR 357
>gi|330448736|ref|ZP_08312383.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492927|dbj|GAA06880.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 357
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 118/358 (32%), Gaps = 2/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATSALTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQASGFSKLDIGLSTLKTAVPMMIIVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + N + + F
Sbjct: 120 QWGAPQAQKMAREYRSAWVYGGSVIAAQSGVWAKNDNDFIYMGRVHDLNKVDVVNIWKFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + D + + S + + D
Sbjct: 180 NKGKLEDVTSAKTASYDKSTGWTMHDVTITDTAGNSKLTNSHVASMKWDTTMTPDKLAVV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + +S+ +S R E F+ + P + M L+A S R
Sbjct: 240 TVKPEELPLSGLYNYVSYLKES-KQDASRYELAFWRKALQPFSIAVMMLLALSFVFGPLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ GF Y + L P+ AL P ++ + ++I +L +K
Sbjct: 299 SVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIIGALGPSLVFLFITIYLLRRK 356
>gi|227114630|ref|ZP_03828286.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|227327172|ref|ZP_03831196.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 358
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 128/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N I F
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGNDFIYIERVTGDKELSGVNIYHFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + + ++ + +I + S + D
Sbjct: 180 DKNKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTFSGEWKTNLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + S + + +S N R + + I P+ + M L+A S
Sbjct: 240 VALEPDALSIRGLHNYAKYLKQSGQESN-RYQLNMWSKIFAPVSVAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + I + + P+ A++P + + +S+ +LL++
Sbjct: 299 RSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKR 357
>gi|317494175|ref|ZP_07952591.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917948|gb|EFV39291.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 356
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 138/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS + + VP
Sbjct: 1 MLGVLDRYIGRTIFSTIMATLFMLVSLSGIIKFVDQLRKVGQ-GDYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L I T+ +
Sbjct: 60 KDIEVFFPMAALLGALLGLGMLAQRSELVVMQAAGYTRMQIASSVMKTAIPLVILTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + + + +
Sbjct: 120 EWVAPQGEQAARNYRAQQMYGGSLLSTQTGLWAKDG-----TDFIFIQRVTGEKSIQGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ D + + + A+ A + KL +V E S T + D
Sbjct: 175 IYSFDNERHLQKLRYANSATFEGHQWKLSQVEESNLTDSKRITGSQTLNGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S + R + + I PL + M L+A S
Sbjct: 235 LGVVAMSPDSLSISGLYHYVKYLKQSGQESS-RYQLNMWSKIFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF Y + I + PV A++P +L + +S+ +LL
Sbjct: 294 GPLRSVPMGVRVLTGISFGFFFYVLDEIFGPLSLVYSVPPVLGAILPSLLFLLISVYMLL 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|149907703|ref|ZP_01896450.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
gi|149809373|gb|EDM69302.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
Length = 355
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 125/360 (34%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K L T+ L + L VI E +G Y + + ++P
Sbjct: 1 MIKILDIYIGKAILFATMICLFTLVGLSAVIKYVEQLRAVG-RGTYGLLEALMYVMLKMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S ++++ + +I + I +L+
Sbjct: 60 REITIFFPMAALLGALIGLGALASSSELVVIQAAGQSRFKIVLSTMKTAIPMMIIVMLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ L + ++ W + +I + D T
Sbjct: 120 EYVAPYTEQKAAQLRGEATSGQSIIRAQKGVWAKDKENFINIGK-----VNNGSELHDVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+++ A A +L + + R ++ + + + +
Sbjct: 175 IYEFAGNQRLVKTTQARRATYTGKYWQLTDLRITHFERDSISVTEQATQRWDSTLTPEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + +++ + SN E F+ I PL + M L+A S
Sbjct: 235 DVVTIDPEDLSISGLYSYITYLD-SNKQDAGSYELAFWRKIFQPLSIGVMVLLALSFVFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + G+ +GF Y L P A++P + ++I+ L +
Sbjct: 294 PLRTVTMGARILMGVVAGFTFYLASETFGPISLVYSLPPFLGAVVPSAIFTLIAIVQLRK 353
>gi|163868027|ref|YP_001609231.1| hypothetical protein Btr_0826 [Bartonella tribocorum CIP 105476]
gi|161017678|emb|CAK01236.1| hypothetical transmembrane protein [Bartonella tribocorum CIP
105476]
Length = 363
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 187/360 (51%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLK T YF +L +ID E ++ LP+Y+ +L+ R+P I+
Sbjct: 5 TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLPSLPHYTAKDAFLLSVLRIPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+INP+
Sbjct: 65 QQLIPFIALFSAMTTLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G ++ +W++N + I W+ IGAK I + D T
Sbjct: 125 AAWGFSQAEKMMTEWRNNNVLTSLHNTRIHWLTQRTDLGRTTIGAKFITDQGFSLLDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + A + + L Y+ G P + +K + +
Sbjct: 185 VQYKDDATVKNWINTPKATLTHGAWFLTNGTIYKIGHPPEKFTVLKIKTNLKPEFLTERL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ FY++ KK+ + + + + LI +P +LVAMTLIAA+VSL F+R
Sbjct: 245 VNPATIPFYQLPKKIMIARSFG-YSAHNFDMYLQSLIALPALLVAMTLIAATVSLNFTRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I LL KEDG
Sbjct: 304 GQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFLLHKEDG 363
>gi|258625834|ref|ZP_05720713.1| Predicted permease [Vibrio mimicus VM603]
gi|258582072|gb|EEW06942.1| Predicted permease [Vibrio mimicus VM603]
Length = 356
Score = 149 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +L ++V + + D
Sbjct: 180 HKKLSTVIFAEQVYYVGNNEWLMKDAQLTRMVN-EIEISKETLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ + R E F+ + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355
>gi|209694121|ref|YP_002262049.1| putative permease [Aliivibrio salmonicida LFI1238]
gi|208008072|emb|CAQ78213.1| putative permease [Aliivibrio salmonicida LFI1238]
Length = 358
Score = 149 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 123/359 (34%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G+ Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSSLCLVTLVGLSSIIKYVEQLRKVGK-GTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLDIGISVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + N + + F
Sbjct: 120 QWGAPQAQKMARDLRAFSISGGNIASMRTGVWAKDGNDFIYLSRVDDQAKLYGVTLWQFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
+ + + + + I K +S + + + D
Sbjct: 180 KERKLDDIVFAKKAEYESKEEGWKLIDVSITDMKDENIITEKKLDSLSWSTTLTPDKLAV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + +S + +++ S R E F+ + P+ + M L+A S
Sbjct: 240 VSVKPEEQSLTGLYDYVNYLKDS-ELDASRYELAFWRKALQPISVAVMMLLALSFVFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +GF Y + + P+ AL P + + +++ +L +K
Sbjct: 299 RSVTMGARILSGVIAGFSFYISNEVFGPMTLVYNIHPIFGALGPSFVFLLITLGLLNRK 357
>gi|37681089|ref|NP_935698.1| permease [Vibrio vulnificus YJ016]
gi|320155253|ref|YP_004187632.1| putative Permease [Vibrio vulnificus MO6-24/O]
gi|326423844|ref|NP_760390.2| lipopolysaccharide ABC transporter permease [Vibrio vulnificus
CMCP6]
gi|37199839|dbj|BAC95669.1| predicted permease [Vibrio vulnificus YJ016]
gi|319930565|gb|ADV85429.1| predicted Permease [Vibrio vulnificus MO6-24/O]
gi|319999214|gb|AAO09917.2| putative membrane protein [Vibrio vulnificus CMCP6]
Length = 357
Score = 149 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G+ Y + +P
Sbjct: 1 MFKILDLYIGRTIVATTSLVLVTFVGLSGIIKYVEQLRKVGK-GTYDLLHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGVSVLKTAVPLMLVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I + L ++W+
Sbjct: 120 QWGAPDAQKMARDLRSFALSGGSIVSVRSGVWAKDANDFIFIGKVDEDKLYGLNMWKFDQ 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + V++ + + + + D
Sbjct: 180 NKKLQSVIFAEEVDYQQDNRWLMRYVQITDMQD-EKVISKHSLEQMEWETSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R E F+ + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVTYLK-ASEQDASRYELAFWRKLTQPISIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + PV A+ P I+ +++++L +K
Sbjct: 298 SVTMGARVISGVIAGFAFYISSEFFGPLTLVYGIPPVFGAVAPSIVFFIVAVMLLNRK 355
>gi|309390182|gb|ADO78062.1| permease YjgP/YjgQ family protein [Halanaerobium praevalens DSM
2228]
Length = 366
Score = 149 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 123/363 (33%), Gaps = 8/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L +Y +K + + + + DL + + L ++P
Sbjct: 1 MKTLNKYIYKELIAPFFFGVAAFTGIFIGTDLIFELTEFYTKWGVEVFTLIKLFFLKLPE 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P +L+ I+ + L+ SE+ RA G+SI L+ P ++ +L T+ +
Sbjct: 61 IIVLTFPMASLLGTIMAYNRLSGDSEITAMRAGGVSILALVMPALILGLLTSGVTIGISE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM--QISNPQQDIFIGAKKILPENHIWEDF 179
+ + ++ Q + + ++ ++ S ++ ++ +
Sbjct: 121 FLVPNANYQAEQIMYQAQHGEQRPETQYDLFLTPMDSRTRRPDYMLYAHSFNGDSGIMKD 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM 234
+ + K +A+ A +D + Y R +
Sbjct: 181 VVVQSFEDGKPDSVLEAESAEWLSDGWHFYDGIIYFLDRENRQPALEFSTYRSREEIHSP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K + + E+ + ++ + +F+ IPL L+AA +
Sbjct: 241 TQAGKLGKDIDEMNIRELNEHIALKEEQGRQAYAE-RVEFHHRFSIPLASFIFALLAAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS I F+ Y ++T+ + G G + P A + I+ + + +
Sbjct: 300 GIKPQRSAGSATGFGISIIVIFIYYVLMTVGDALGSQGTIEPWLGAWLQNIVIFVVGLAL 359
Query: 355 LLQ 357
L +
Sbjct: 360 LFK 362
>gi|83313005|ref|YP_423269.1| permease [Magnetospirillum magneticum AMB-1]
gi|82947846|dbj|BAE52710.1| Predicted permease [Magnetospirillum magneticum AMB-1]
Length = 367
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/363 (20%), Positives = 159/363 (43%), Gaps = 6/363 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y + + LL + ++ + D+ E+ + P I+ ++A ++P ++
Sbjct: 6 IMSGYIGRQFASAFATVLLVILGIILLFDVIELIRRAAGRPELGITPILLMAFFKLPQML 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF ++ ++V F+ L RT ELV++RA GIS+WQ + P + + + GIF + NP+
Sbjct: 66 HTILPFAVMIGSMVCFWRLTRTHELVVARAAGISVWQFITPVLAVAGIFGIFEITTFNPM 125
Query: 124 ATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE--DF 179
A + L + S++ W++ + ++ + ++ + + + D
Sbjct: 126 AAAMYGRYERLQDELLATKASAFDISEVGLWLREPHENGEMVVHSETVRQDGLVLHIRDA 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D+ + R A+ A + + ++++ + G+ + K + + +D
Sbjct: 186 HFFLYDRPDHFHQRISAESATLVDGAFEVRRAWVMEGGKPSVFKEQMHIPTQLTLDRIHD 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+++ + F ++ F + L+ P++ M L+AA SL +
Sbjct: 246 NFASPETLSFWQLPGFIRFFERAG-FTANKHRLYLQSLLASPVLYCGMVLMAAVFSLRPN 304
Query: 300 -RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +GF +Y ++ + G S L AA P + + + L
Sbjct: 305 TRSGGLLARIGAGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLIGLSGLFHL 364
Query: 359 EDG 361
EDG
Sbjct: 365 EDG 367
>gi|56461046|ref|YP_156327.1| permease [Idiomarina loihiensis L2TR]
gi|56180056|gb|AAV82778.1| Predicted permease [Idiomarina loihiensis L2TR]
Length = 356
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 131/358 (36%), Gaps = 10/358 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL +Y L+T+L L L +I E +G +Y++ A+ +P
Sbjct: 1 MFSILDKYIGLSVLRTSLLSLAVLTGLSSLIRFVEQLKAVG-RGDYNVMDAALFVFYSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SELV+ A G S ++ + +I++ + + +
Sbjct: 60 RDVETFFPMAALLGGLIGVGMLASNSELVVMMAAGRSRLNIIGAVMKSAIIMMVAVMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E G + Q G + W + + +I + + D
Sbjct: 120 EWIAPPMEAQGRAIRSQAISGGSLISAQQGVWAKDGSDFINIGE-----VEDTGRLNDVL 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ A A DK ++++V + +K S + D
Sbjct: 175 IYDFNDNRELQKVTYARTANFSGDKWRMQQVTVTQLDDIRMLRDEKPSMVWQSSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S ++ +++ SN R E + + P+ + M L+A S
Sbjct: 235 GVVTIKPESLSITGLLDYLTYLE-SNQQSAERYELALWRKLFAPITVAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ +GF + I + + + AL+P IL +++ +
Sbjct: 294 PLRSTTMGARILLGVITGFGFHVSNEIFGPLAQVYQIPAILGALLPSILFAGVAVYFM 351
>gi|90411865|ref|ZP_01219873.1| putative permease [Photobacterium profundum 3TCK]
gi|90327123|gb|EAS43495.1| putative permease [Photobacterium profundum 3TCK]
Length = 356
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 126/361 (34%), Gaps = 9/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGD-GTYDLWKALIYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +++
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L W G+ W + FI ++ ++ +
Sbjct: 120 QWGAPQAQKSARELRAIWTSGGNMLSVQSGVW----AKDGNDFIYIGRVHEQSTLNAVNI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGF 237
D+ + L V + + ++ + D
Sbjct: 176 WQFDDEDTLSKMVFAKSASFTDEQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDKL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + +S+ +S R E F+ ++ P+ + M L+A S
Sbjct: 236 AIVTVKPEELALSGVYDYVSYLKES-KQDASRYELAFWRKLLQPISIAVMMLLALSFVFG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF Y + L P AL P ++ + ++I +L +
Sbjct: 295 PLRSVTMGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSLVFLLITIYLLRR 354
Query: 358 K 358
K
Sbjct: 355 K 355
>gi|238921309|ref|YP_002934824.1| hypothetical protein NT01EI_3453 [Edwardsiella ictaluri 93-146]
gi|238870878|gb|ACR70589.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 356
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 142/362 (39%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + VP
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + N I + + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAKDGNQFVYISQ-----VVNDRTLGGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
T+D + K+ + A A + KL +V E + S T + D
Sbjct: 175 IYTLDAQRKLTSLRYAASATFDGKQWKLAQVEESNLSDPKMITGSRTLSGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S + R + + + PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYYYVKYLKQSGQESS-RYQLNLWIKVFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV A++P L + LS+ +LL
Sbjct: 294 GPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLL 353
Query: 357 QK 358
++
Sbjct: 354 RR 355
>gi|144900091|emb|CAM76955.1| permease YjgP/YjgQ family [Magnetospirillum gryphiswaldense MSR-1]
Length = 367
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 82/363 (22%), Positives = 159/363 (43%), Gaps = 6/363 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L L + +VF+ D+ E+ + + + +A ++P ++
Sbjct: 6 TLSAYIGRQFLLAFASVLAVILGVVFLFDIIELIRRAAGRGDLGVFNLVAMALLKLPQMM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF ++ +V F+ L RT ELV++R+ GIS WQ L P +V LG+ + NP+
Sbjct: 66 HTVLPFAVMIGAMVAFWRLTRTHELVVARSAGISAWQFLTPVLVLVAGLGVIELTAFNPM 125
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWE--DF 179
A + + + S++ W++ + Q+ I + A ++ E
Sbjct: 126 AATMYGRFQKMEDEILLGKTSALDVSEMGLWLREGDAQRQIVLHADQVQQELLTLNLRGV 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + R A + + ++L V E + G+ + + L + ++
Sbjct: 186 HVFVLNAEEHFTRRLSAASGRLADGVLELTDVWEMEGGKSSVHHPALKLATELTLERVHD 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+++ ++F K+ F + F L+ PL+ AM L+AA SL +
Sbjct: 246 NFASPETMSFWQLPAFITFFEKAG-FAATKHRMHFQSLLSSPLLYCAMVLVAAVFSLRPN 304
Query: 300 -RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V G+ +GF +Y I+ +FG S L AA P ++ + + LL
Sbjct: 305 MRAGGLLMRVGGGVAAGFGIYFFNKIIYAFGLSATLPQGLAAWSPALVAGLIGVSGLLHL 364
Query: 359 EDG 361
EDG
Sbjct: 365 EDG 367
>gi|77165378|ref|YP_343903.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|254434004|ref|ZP_05047512.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
gi|76883692|gb|ABA58373.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|207090337|gb|EDZ67608.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
Length = 354
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 118/360 (32%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + TL L + L + +GE +Y + +P
Sbjct: 1 MKILDRYIAKAVISYTLLVLFILIALYTFLQFVTELEDVGE-GDYGVMGALRYTTYSIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++P L+ +++ L SELV RA G S+ ++ + ++ I TVL+
Sbjct: 60 HIYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIVTVLMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ L K + W + + N +E
Sbjct: 120 VVAPPAQQAANKLRSLAKTGHLSEDGGQGFW-----SRNGNNFNHVGRVLPNGQYEYIEI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
D + ++ A AI + D L V + G + + +
Sbjct: 175 FEFDDQRRLRIVTQAARAIYHKDGWHLYDVTQRLISTKGITTRRLDEALWESGLNPEMLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + + + + + + F+ IV P + M +A
Sbjct: 235 VVMVDPQQLSAWGLYRYIGYL-QKSKQAAEQYRQAFWSKIVAPFSTLIMMFLAIPFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G G + + G L P A P +L ++L +++L +
Sbjct: 294 LRSVSVGQRILVGALVGIGFFLFNRLFNQLGLVFDLPPWLGAAFPSLLCLALGVVMLRRI 353
>gi|319784424|ref|YP_004143900.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170312|gb|ADV13850.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 360
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 191/359 (53%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y+ T++F +G + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 4 TLGRYFFFRYVTITIWFFIGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V VINP+
Sbjct: 64 LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVLSVGVINPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + Q + S D PW++ D IGA+ IL + D
Sbjct: 124 AAHAFSWSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMADVVFF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+D + I+ RKDA A + + +L+ V +Q G I + + +K + Q+
Sbjct: 184 ILDPQGNIVERKDAARAFLRDGYWELQDVKTFQNGTIQAS-ATDRVPTNLKPEFVQERLA 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + FY++ K+ + + N QF L+ +P +LVAMTLIAA+VS+ F+R
Sbjct: 243 RPETIPFYDLPGKIEVARSFGLKANA-FAMQFDSLVALPFLLVAMTLIAATVSMRFARMG 301
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ GI +GF+LY + ++K+FG +G + V AA +PV++ + + LL KEDG
Sbjct: 302 QSATMILGGIIAGFLLYVVSVLVKAFGVAGFVPTVVAAWVPVMVAMFFGVTFLLYKEDG 360
>gi|308050967|ref|YP_003914533.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
gi|307633157|gb|ADN77459.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
Length = 354
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 128/361 (35%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ LL L +I + +G +++ A+ VP
Sbjct: 1 MIRILDLYIARTIINTSALCLLVLTGLSGLIKFVDQLRLVG-RGDFTTWDVALYVLFLVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P ++ ++ L +SELV+ +A G+S + + ++ L I +L+
Sbjct: 60 RDIEMFFPIAAMLGALIGMGMLASSSELVVMQAAGLSRLNIAASVMKTAVPLMIIAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ ++ Q G S W + +I + + + T
Sbjct: 120 EYVAPVSEQTAREMRAQKTSGGSLISSSTGTWAKDGELFVNITE-----VQDARTLKGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGF 237
D N + A+ + +L V E + D++ + +
Sbjct: 175 IYRFDGDNLLREITFAEQGLYDGKAWRLLDVTETDLTDEQVSTLDRDELRWPSSLTPEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + + S +I + + +N R E + + P+ + M ++A S
Sbjct: 235 QVVTVKPEGLSIEGLIDYVDYLK-ANRQDTTRYELALWRKVAQPITVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A++P IL + +L +
Sbjct: 294 PLRTVTMGARVLLGVITGFSFYIANEIFGPMSLVMGLPTFLGAMLPSILFAIAAFALLQR 353
Query: 358 K 358
+
Sbjct: 354 R 354
>gi|78188283|ref|YP_378621.1| hypothetical protein Cag_0302 [Chlorobium chlorochromatii CaD3]
gi|78170482|gb|ABB27578.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 359
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 132/360 (36%), Gaps = 3/360 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F+ ++K L+ L + L +I++ E + + S A +P
Sbjct: 1 MKILERYIFQQFIKAFLFTALVFVSLFIIINMIEKLGNFMD-HHVSALEIARYYLLSIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P L+ +I+V L +EL R+ G+S+ QLL PF G++LL +F
Sbjct: 60 IFLVTSPVSALLASILVAGKLATQNELPAIRSAGVSMRQLLTPFAWGALLLFLFNFFNAG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFT 180
+A + Q + + + S + I N++ +
Sbjct: 120 WLAPTTYSHNRTFEQLYLGKNAGDQETRNLHLLDSGNRFISIGAFNPINESLNNVSIERL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S + ++ + + K + T+ + ++ +
Sbjct: 180 SGATMISRIDADSMHYNRRTKRWTMWRVTERYFSNGYQSFTTKPTATIRLALRPKALHEM 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + + + ++ R+ +F+ I +P + +TLI ++ R
Sbjct: 240 RLQPDEITLPRHYQFLREKEEAGFSGLERSAVKFHNKIAMPFASLIITLIGVPLAARKKR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+A +F GF+ I + G G+L P+ AA +P +L + + ++ + D
Sbjct: 300 -GGIAAEIAITLFIGFLYLGIQRTIAIAGYQGVLPPIVAAWLPNLLFLVVGWVLYKKSTD 358
>gi|268592782|ref|ZP_06127003.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
gi|291311563|gb|EFE52016.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
Length = 358
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 134/359 (37%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILVTLFLLVSLAGIIKFVEQLRKVGD-GDYTALSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + ++ L I + +
Sbjct: 60 KDIDIFFPMAALLGALMGLGALASRSELVVMQASGFTRLQIALSVMKTAVPLVIVAMFIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA +GE+ + + +D W + +N I ++ F
Sbjct: 120 EWIAPAGEQWARNYRAEKIVGNSLVVTDEGMWAKDANDFIHIQRINNATSIQDVSIYRFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K + D ++ + ++ + + + + +
Sbjct: 180 DQRKLKSVMFAANGEYDSTNQLWVLSQVDESILSSEKKITGSQRLTVDWKTNLTPEKLGI 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S S S + + +S+ +S E + I+ PL M L+A S
Sbjct: 240 VSLNADSLSIRGLYQYVSYLKESGQVAAV-YELSMWKKILAPLSAAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V GI GF+ Y + ++ + P+ AA +P +L + +SI +L+++
Sbjct: 299 RTVPMGVRVISGIVGGFLFYVLNQGFGNWSLVYSVPPIIAAALPSVLFLIVSITLLVKR 357
>gi|291616052|ref|YP_003518794.1| YjgQ [Pantoea ananatis LMG 20103]
gi|291151082|gb|ADD75666.1| YjgQ [Pantoea ananatis LMG 20103]
Length = 378
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 126/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T L L + L +I + + G+ YS VP
Sbjct: 21 MFRVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQ-GAYSALDAGYYTLLSVP 79
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 80 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 139
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N I + +FT
Sbjct: 140 EFVAPQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNNFIYIERVKGDDEIDGVSIYNFT 199
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + + ++ + +I ++ + + D
Sbjct: 200 DDRRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGV 259
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + I PL + M L+A S
Sbjct: 260 VALDPDALSITGLYDYSKYLKQSGQESG-RYRLNMWSKIFQPLSVAVMMLMALSFIFGPL 318
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I L P+ A++P ++S+ +L+++
Sbjct: 319 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAISLFMLIKR 377
>gi|327481778|gb|AEA85088.1| permease [Pseudomonas stutzeri DSM 4166]
Length = 353
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 128/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L + L + + + NY + P
Sbjct: 1 MVK-LDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDV--QGNYGLGDALQYVLLTSP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P L+ ++ L +SEL I RA G+S+ +++ + ++L + +L+
Sbjct: 58 RRLYDMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + G+ Q S W + N + + + T
Sbjct: 118 EYVAPLTEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHV-----NAVQPGGVLVGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
D++ +++ A A D +L+ + + + ++ +
Sbjct: 173 RYRFDEERRLLSSSFARRASYQGDHWRLENIATTHFRGDHTEVARAPEERWDVQLTPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S + + + + + +N R F+ ++ P + VA+ L+A S
Sbjct: 233 GTVVMEPEALSITGLWRYIHYLGEQG-LNNSRYWLAFWTKVLQPAVTVALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 292 PLRSVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351
>gi|312884632|ref|ZP_07744335.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367724|gb|EFP95273.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 356
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++GE Y + + +P
Sbjct: 1 MFKILDLYIGKTLIATTSLVLATFVGLSAIIKYVEQVRKVGE-GTYDLIQALFFVILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N I + ++W
Sbjct: 120 QWGAPQAQKMARDLRTFATSGGALMSVRTGVWARDANDFIFINKVDDDKIYGLNMWRFND 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + I ++ + + + D
Sbjct: 180 QKQLSQTLFAKEVDYVSENIWVMKDAEVTDMEG-EVKLEKHFLKEYEWKTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + +S+ S+ R E F+ + PL + M L+A S R
Sbjct: 239 TVKPEELSLGGLYEYVSYLK-SSEQDPSRYELAFWRKVTQPLSIGVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + P+ A++P + + ++I +L +K
Sbjct: 298 SVTMSARILSGVIAGFTFYISSEFFGPLSLVYNIPPIFGAIMPSCVFLLIAIFLLQRK 355
>gi|319404055|emb|CBI77643.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 363
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 119/360 (33%), Positives = 195/360 (54%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+PLI+
Sbjct: 5 TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLALLPHYTAKGAFLISLLRIPLIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L INP+
Sbjct: 65 QQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A +I +W+ N + IPW+ I +GAK I+ ++ D T
Sbjct: 125 AAWSSSQAKKMIAEWRSNSAQISTTDTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + + + A + + L Y+ G+ P + +K + ++
Sbjct: 185 VQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ FY + KK++ + + + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 245 TDPITIPFYTLPKKIAVARSLG-YSANKFDMHLQSLIALPMLLVAMTLIAATVSLKIPRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL EDG
Sbjct: 304 GQSRTLILGGVIAGFILYVISMLVQSFGNAGYIPPIIAAWVPVIVALFFAISFLLYTEDG 363
>gi|226940337|ref|YP_002795411.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
gi|226715264|gb|ACO74402.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
Length = 357
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 9/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + +++ LL + L D+ +G YS S V+ A ++P
Sbjct: 1 MKILTRYIGGNVIAASIFGLLALLSLFAFFDVLSELTDIG-RGGYSFSDVLVVVALKLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L +SE + R G+S+ Q+ L + T +
Sbjct: 60 HAFELMPLAVLIGTMVAMSLLAGSSEYAVMRTSGMSLGQVARILAGIGALFAVLTFVTGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ Q W++ N FI +++LP+N +
Sbjct: 120 FAAPWAEQASERTKLQSTGAVISGDFRSGAWIKDDNH----FINVREMLPDNTLLGINIY 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
R + +L+ + E + D S ++ +
Sbjct: 176 TYDKNDRLTDVRYARRAIYQPDGSWQLEDIKETRIEANRTIARDLPSQRWESILQPELLS 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ + + N + R E + + PL + M L+A + +
Sbjct: 236 TLLVEPERMSVADLGRYIEHLAT-NRQNTLRYEIALWGKLFYPLACLTMALVALAFTPVN 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GI G Y I + G P L+P ++ +++ L+++
Sbjct: 295 QRQSNLGSRIFVGILIGLAFYFINRLFGHLGLLYGWSPPLVTLLPTLIFLAVGTWFLVRQ 354
Query: 359 E 359
E
Sbjct: 355 E 355
>gi|193215417|ref|YP_001996616.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
gi|193088894|gb|ACF14169.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
Length = 360
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 140/361 (38%), Gaps = 9/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F+ Y T + +L + L ++DL E + + N + A P
Sbjct: 1 MKILDRYIFREYFSTLGFAILAFVSLFILVDLIEKVDDFLDK-NVELKLIAQYYLYFTPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+ I+P TL+ ++ V L + +EL +A GIS+++LL PF + ++G +
Sbjct: 60 IIKLIVPISTLLASLFVTGKLAKQTELTAMKAGGISLYRLLLPFFLVGAIIGGIDFYLSG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + + S + NP + + IG + ++ +
Sbjct: 120 WVVPETTKFKEQFDATYLGKTKWKSSSFSNIELLENPNRIVRIGY--FNKDTRTCQNVSL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDG 236
K + + A + + + Y+ + ++ S T+ +
Sbjct: 178 QNYQKSHMLWRIDAAKMTYDTSLSRWIFYQAYYRDFQSGKEQFSYAAKIDTVQLVFSAKE 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + S E K + ++ + A +++ I P+ + + LI +S
Sbjct: 238 LEENNAALDQMSLDEHWKYIEARRRAGFSNVDEALVKYHIKISFPIACLIVILIGVPLSA 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
E RS + + GF+ + + G G + P+ +A IP L +++ ++ L
Sbjct: 298 EKKRSG-IALEAGISLLIGFLYIILQKTFSTLGYKGAVDPILSAWIPNFLFLTVGLVFLF 356
Query: 357 Q 357
+
Sbjct: 357 K 357
>gi|86605895|ref|YP_474658.1| YjgP/YjgQ permease [Synechococcus sp. JA-3-3Ab]
gi|86554437|gb|ABC99395.1| putative permease, YjgP/YjgQ family [Synechococcus sp. JA-3-3Ab]
Length = 400
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/373 (14%), Positives = 124/373 (33%), Gaps = 19/373 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY L + + LV + ++ S+S + R P I
Sbjct: 26 GLMDRYIISEMLLPFFFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ +E+ R G+S+++L+ P ++ S+L+ T L
Sbjct: 86 IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLVVPALLLSLLVTTLTFLFNEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-----------------PQQDIFIG 165
+ + + + + + + + I + + Q
Sbjct: 146 VVPVSNRQAALTLNRALNRTPEFRRENILYQEFGEILAPEPDGTFSRRQGLTRQFYARSF 205
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ + + + R D + ++ V
Sbjct: 206 DGQQMRGVIVLDLSNEALSQILLAQQGRWDPQENLWVFEEGTNYIVSPDGTYSNIATFAR 265
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLML 284
L +P + + E+ + + S R + IP
Sbjct: 266 QELRLPRAPLDLAQEVRSPEEMNIQELRRYIEVIASSGDLQGVRRLQVSLSQKYAIPFAC 325
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+A TLI A ++L R++ + + + F Y ++ + ++ G+ G L P AA +P
Sbjct: 326 LAFTLIGAPLALRPQRTSS-SLGLGLSVLIIFAYYVLLFVSQALGQIGTLGPEVAAWLPN 384
Query: 345 ILTISLSILILLQ 357
+ ++ + +L +
Sbjct: 385 FICSAVGLGLLYR 397
>gi|260771006|ref|ZP_05879935.1| putative membrane protein [Vibrio furnissii CIP 102972]
gi|260614243|gb|EEX39433.1| putative membrane protein [Vibrio furnissii CIP 102972]
gi|315179054|gb|ADT85968.1| hypothetical permease, YjgP/YjgQ family [Vibrio furnissii NCTC
11218]
Length = 356
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 120/358 (33%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT+ L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTMLVLATFVGLSGIIKYVEQLRKVGD-GTYDLMQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGALAASSELVVMQAAGFSKLDIGLSVLKTAVPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL G W + N I L ++W
Sbjct: 120 EWGAPQAQKAARDLRAFATSGGKILSVRTGVWARDINDFIFIGKIDDNRLYGMNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ V++ + + + D
Sbjct: 180 HKQLRHVIFAKQVDYLGGNSWVMKDVEVTDMND-DVVITKQSLPEYRWETSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + + + ++ R E F+ I P + M L+A S R
Sbjct: 239 TVKPEELALSGLYDYVHYLK-ASEQDASRYELAFWRKITQPFSIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV A+ P I+ +S+++L+L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGIPPVFGAVAPSIVFLSIALLLLRRK 355
>gi|300718540|ref|YP_003743343.1| permease [Erwinia billingiae Eb661]
gi|299064376|emb|CAX61496.1| putative permease [Erwinia billingiae Eb661]
Length = 358
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 129/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTALGAGLYTVLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I F
Sbjct: 120 EFVAPQGEQMARNYRAQQLVGGSLLSTQNGLWAKDGDNFIFIEQIKDNSELSGISIYSFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + ++ D ++ + ++ + S + D
Sbjct: 180 KERRLETVRYAASAKYNVDKKRWDLAEVDQSNLTDPKQVTGSQTLSGEWKTTLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + + +S + R + + I PL + M L+A S
Sbjct: 240 VALDPDALSISGLYNYVKYLKQSGQVSS-RYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P ++S+ +LL++
Sbjct: 299 RSVSMGMRVVTGISFGFIFYVLDQIFGPLSLVYNIPPIMGALLPSGAFFAISVYMLLKR 357
>gi|261211061|ref|ZP_05925350.1| putative membrane protein [Vibrio sp. RC341]
gi|260839562|gb|EEX66173.1| putative membrane protein [Vibrio sp. RC341]
Length = 356
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVDNEQLIGMNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + V L ++V + + D
Sbjct: 180 NKKLSTVIFAEEVDYIGNNEWLMKDVHLTRMVN-DIEISKEALPEYRWHTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + ++ R E + + P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLSDYVHYLK-ASEQDASRYELALWRKVTQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ A+ P ++ +++++ +L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAIAPSLVFLTIALGLLGRK 355
>gi|271498969|ref|YP_003331994.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
gi|270342524|gb|ACZ75289.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
Length = 356
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 139/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N I + ++ +
Sbjct: 120 EWVAPAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQR-----VAGDNELQGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
DK +K++ + A A+ N KL +V E S + D
Sbjct: 175 LYHFDKHSKLLSVRYAASAVYENGSWKLSQVEESDLNDSKQIGGSQTVSGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + + +S R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLYDYIKYLRQSGQ-EANRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV AL+P L + +S+++LL
Sbjct: 294 GPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHMPPVLGALLPSALFLFISVMLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|319898730|ref|YP_004158823.1| hypothetical protein BARCL_0559 [Bartonella clarridgeiae 73]
gi|319402694|emb|CBI76240.1| conserved membrane protein of unknown function [Bartonella
clarridgeiae 73]
Length = 363
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 191/360 (53%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLK YFLLG IL +ID E +++ LP+Y++ +++ R+P I+
Sbjct: 5 TLGRYFFVLYLKKICYFLLGVFILTLLIDFTENSSRLELLPHYTVKGAFLISLLRIPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L + + +LN+ ELV++R+IGIS WQ L P G+ LLG+F++L +NP+
Sbjct: 65 QQLFPFIALFSAMTMLISLNQKLELVVARSIGISAWQFLMPACFGAFLLGLFSILFVNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDI--IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A +I W+ N + + IPW+ IGAK I + D
Sbjct: 125 AAWSSSQAEKMIAAWRSNNIEISTSNTRIPWLTQQTNLGRTTIGAKSITHQGLSLIDAIF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + + + A + N L Y+ G+ P L +K + +
Sbjct: 185 VQYNENATVKNWINTKKATLTNGAWLLTNGTIYKIGQTPEKFTELRLKTHLKPEFLTEHL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ FY++ +K++ + + + + LI P++LVAMTLIAA+VSL+F+R
Sbjct: 245 ADPVTIPFYKLPEKIAVARSFG-YSANKFDMHLQSLIASPILLVAMTLIAATVSLKFTRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PV++ +S I LL EDG
Sbjct: 304 GQSRTLILGGVIAGFILYVISVLVRSFGNAGYIPPIIAAWVPVVVALSFGISFLLHTEDG 363
>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
Length = 359
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 176/358 (49%), Gaps = 3/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF+ Y T + +G LV+++ EI + G+L ++ S LAA ++P+I+
Sbjct: 5 TLGRYFFRRYAVITAWNFIGVAALVYIVTFTEITGRAGDLEGFTTSWALGLAALQLPIIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ +PFI LV I +LNR ELVI+RA GIS WQ L P G+ + G+ TVLV+NPI
Sbjct: 65 QQAVPFIGLVAAIATLISLNRKYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNPI 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A L + D + W++ Q + IGA L
Sbjct: 125 AARAFASAQMLEATVR-GADTSNNAKERWIKQRTDQGETIIGADAALAGGTELVRPVFFI 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I I R DA A + + +L VV Q G P + + +K + +
Sbjct: 184 IGDDR-IAERLDAASAFLRDGYWELVDVVRRQGGNAPEKIATARVPTNLKPEFVGQELTD 242
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + + + ++ + N Q + LI +P +LVAMTLIAA+VS+ F+R Q
Sbjct: 243 PDAVSIFALPGMIETAHSFGLRANA-FAMQLHSLITLPPLLVAMTLIAATVSMRFTRMGQ 301
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ G+ +GF+LY ++++FG +G + P AA PV++ + + LL +EDG
Sbjct: 302 SATVILGGVVAGFLLYVSSVLVRAFGDAGFVPPPIAAWTPVMVAMFFGVTFLLFREDG 359
>gi|320539288|ref|ZP_08038958.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
gi|320030680|gb|EFW12689.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
Length = 356
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 135/362 (37%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ +Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRRVGQ-GDYTVLGAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ D Q G + W + N I +
Sbjct: 120 EWVAPQGDQMAHDFRAQQMYGGSLLSTKSGLWAKDGNDFIYIER-----VSGEKELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + ++ + A A + KL +V + + T + +
Sbjct: 175 IYHFNDRRRLETVRYAATASFEDGVWKLSQVDTSDLTNEELVTGTQTLTGEWKTNLTPEK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S R + + I PL + M L+A S
Sbjct: 235 LGVVALDPTSLSIKGLHNYVKYLKQSGQ-EANRYQLNMWNKIFSPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS I V GI GF+ Y + I + PV AL+P ++ + +S+ +LL
Sbjct: 294 GPLRSVPMGIRVVTGISFGFLFYVLDQIFGQLSLVYNMPPVLGALLPSMMFLLISMYMLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|21674368|ref|NP_662433.1| hypothetical protein CT1549 [Chlorobium tepidum TLS]
gi|21647546|gb|AAM72775.1| membrane protein, putative [Chlorobium tepidum TLS]
Length = 384
Score = 147 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 132/352 (37%), Gaps = 3/352 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +L L+ L L +I+L E ++ + + S R + + +P
Sbjct: 29 IIDRYIARQFLTIFLFALASFAALFILINLVENLDRFLDR-HISFGRILIYYLSGLPDTF 87
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ V L+ SEL ++ G+S+ +L+ PF++ ++ + + I
Sbjct: 88 LLTSPLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIAALNTINSCFI 147
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + +++ + + + +N + + + + +
Sbjct: 148 APAMYDWSKGFEKRYLKKQQDNGEEPLHIRESNNRILTVAKIGPDKKSATTVSLETFNGS 207
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSE 242
Y K+ + + + + TL + + + F+
Sbjct: 208 QIVSRIDADSLRIITRHKYWIFYNTKQRTFSKGAETLVTRAGADTLKLSLAPNTFKMIDT 267
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + I + +S + RA + + + +PL + + LI +S + RS
Sbjct: 268 DPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTKLALPLASMIIVLIGVPLSSKKKRSG 327
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + G + ++ + S G G+L PV AA +P IL I +
Sbjct: 328 -LAVEISISLLIGLLYLGMLKTIGSLGYDGLLNPVLAAWLPDILFIIAGTFL 378
>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
Length = 365
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 140/363 (38%), Gaps = 7/363 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL R+ +K + ++ ++ ++ DL M SI L +P +
Sbjct: 5 GILDRFIWKEMAGSFVFGVMAFTMVFVAGDLLFQIASMIIEKGISIGVVLRLFIYSLPEV 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F L+ SE+V +A GIS ++L P +VGS+L+G+ +++
Sbjct: 65 IILTLPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGLSALILNET 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +L++ +++ + Q + + L +
Sbjct: 125 VVPFSNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMTNVLV 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGF 237
+K K+ + + K + +Q + ++ +
Sbjct: 185 QEFEKGKLKRITVGKTGLWKDGKWWIDDGEVFQVTNGGKVELLFRFERQQFDLNLSPQQV 244
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ S + + S E++ ++ F+ +P V + ++ AS+ +
Sbjct: 245 EQASRKPSEMSALELMAQIRLLQAQGGNLAPLW-VLFHLRFAVPWASVVLAILGASLGVR 303
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + + F+ Y ++++ K+FG++ + P+ AA +P +L + + +
Sbjct: 304 SHRTGS-GVGFGLSVMIVFVYYVVMSLCKAFGETEHMPPLLAAWVPNVLFLLVGGYFARK 362
Query: 358 KED 360
D
Sbjct: 363 AND 365
>gi|261342655|ref|ZP_05970513.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
35316]
gi|288315303|gb|EFC54241.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
35316]
Length = 360
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY + T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGRTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDAMGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDDELGGVSIYAFNN 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKF 240
+ + D ++ + +I + T T + D
Sbjct: 183 ERRLQSVRHASSAKFDAEHKQWRLSQVDESNLTDPKQITGTQTVTGTWKTDLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P + +S+ +LL++
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFLLISLWMLLRR 359
>gi|329850878|ref|ZP_08265723.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
gi|328841193|gb|EGF90764.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
Length = 380
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 5/361 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + + L+ L+ +I+ EI + + V+ R P I
Sbjct: 21 LETYILQTCVAMFASALMVVSALILLINYVEISRSVAARADLGGLEVLVMLFQRSPSAIL 80
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L ++ F NLNR SEL+ RA G+S W+ + P V + GI T+ V+NP+A
Sbjct: 81 ILLPFAFLFGSLFAFVNLNRRSELIAMRAAGVSAWRFVLPATVSAFAFGILTIGVLNPVA 140
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + ++ I Q + +Q + + + T
Sbjct: 141 SHLQDVYERKVVAAEAFAPTDPAEAIYLRQGDSDRQVVIRADGQASAQIGHLRGVTFWIF 200
Query: 185 DKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ I R DA AI+ +LK EY + N TL+ + K
Sbjct: 201 TTDRRGAPSFIERVDAREAILRPGSWQLKDAREYTLDKPAQFYNVLTLSSNLDPQKAFKR 260
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S F+ + + + S F E + + L+ PLM AMT + A SL R
Sbjct: 261 YASTQSVPFWRLPGLIRQNQISG-FSTTSYELKLHQLLSTPLMFAAMTALGAVFSLRLMR 319
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I+V G+ GF+++ + + S GK+ ++ A P +L + ++ +L+ ED
Sbjct: 320 LGGLTILVTSGVSLGFVIFFVNQLFASMGKADVIPAALAGWSPAVLAMLGAMTLLVYTED 379
Query: 361 G 361
G
Sbjct: 380 G 380
>gi|152985629|ref|YP_001346669.1| hypothetical protein PSPA7_1284 [Pseudomonas aeruginosa PA7]
gi|150960787|gb|ABR82812.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
Length = 355
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 64/362 (17%), Positives = 116/362 (32%), Gaps = 14/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + N + +Y I A P
Sbjct: 1 MVK-LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGEALRFIALTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV
Sbjct: 58 RRAYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + GD Q S W + + N + T
Sbjct: 118 EYVAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGR-----EYIHINAVQPNGVLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MD 235
D++ + A A D +L+ V L
Sbjct: 173 RYRFDEQRGLQSASFAKRARFETDHWQLEDVTTTLLHPQEKRSEVVKLPTERWDAQLSPQ 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 LLNTVVMEPEALSISGLWQYIHYLADQG-LNNNRYWLAFWTKVLQPLVTAALVLMAISFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ GF+ ++ P+ A +IP + +L
Sbjct: 292 FGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASACALAGLWLL 351
Query: 356 LQ 357
+
Sbjct: 352 RR 353
>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
Length = 366
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 88/363 (24%), Positives = 159/363 (43%), Gaps = 7/363 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + YL + L L+ + D+ EI + G I +A +P+ +
Sbjct: 6 TLTTYIARTYLTALVGATLVVGALLMLFDVIEITRRSGSKA-IGIDVVLEMALYHLPMSL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF+ + +++F+ L R+SELV+ RA G+S+WQ L P + ++LGI V ++NP+
Sbjct: 65 QSALPFVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGIANVTLLNPL 124
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
A + SD W++ +NP+ + + A+ + ++
Sbjct: 125 AAHLYTKYERMDAGMDSGVANPLALSDGGLWLRENNPEGQVVMHAQGVRQVDNALRMTGV 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + R DA+ A + + L VV GR+ + + + + Q
Sbjct: 185 TIFRYGPDRRFESRIDAETAGLREGALVLTSVVTTYPGRVGERAETLEVPSNLTLPKIQD 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+E+ ++F + F + ++ LI PL+L+AM L+ A SL+ S
Sbjct: 245 SFSPPETVSFWELPAFITFFEAAG-FSAHAHRLHWHSLIASPLLLIAMVLMGAVFSLKPS 303
Query: 300 -RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + + +GF ++ I + G S L AA P ++T +++ L
Sbjct: 304 QRSVNWLFRIVGAVAAGFGVFFFSKITYTLGLSQTLPVNLAAWSPALVTTMVALAALFHL 363
Query: 359 EDG 361
EDG
Sbjct: 364 EDG 366
>gi|119383652|ref|YP_914708.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373419|gb|ABL69012.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 373
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 81/374 (21%), Positives = 151/374 (40%), Gaps = 18/374 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + +L+ + ++F+ID+ E + + N +S A L+ +
Sbjct: 2 ILSTYVARRFLRMLVMIAAIFGAILFLIDIVEQIRRFSD-ENIGLSGAAGLSLLNITASF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P IT++ I +F NL+R+SELV RA G S ++L V + L G+ V V+NP+
Sbjct: 61 YSILPLITVLAGIALFLNLSRSSELVAIRASGRSGIRVLAAPAVTAALAGMLAVAVLNPV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQI---------SNPQQDIFIGAKKILPE 172
+ K D + Q + G + D W++ + I A + P+
Sbjct: 121 VAATTKRYDDAVAQMRSGGGQTVSVGDNAVWLRQALPTRNGNGDETSGQVVIRASRASPD 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTT 227
D T + R DA A + +L + E+ + +
Sbjct: 181 ATTLYDATFMVFAPDTGPTRRIDAATARLTQGAWELTDIKEWPLTQPNPETMARTAPRLE 240
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L + + + + +++ + ++ F R + F + PL+L AM
Sbjct: 241 LPTDLTAARIRDSFGRPEAIPVWQLPAFIKGLERAG-FSAQRHKVWFQMELARPLLLAAM 299
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
IAA ++ R + ++V G L+ + + + G +G + P A P I+
Sbjct: 300 IAIAAVFTMRHMRGRRMGLLVLGAFGCGIGLFFLRNLAQVLGDNGGIPPALAGWAPPIVA 359
Query: 348 ISLSILILLQKEDG 361
+ ++ LL+ EDG
Sbjct: 360 LLFALGALLRLEDG 373
>gi|260772183|ref|ZP_05881100.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
gi|260613050|gb|EEX38252.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
Length = 356
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G+ +Y + + VP
Sbjct: 1 MFKILDWYIGRTIIATTTLVLVTFVGLSGIIKYVEQLRKVGD-GSYDLLQALFFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALAASSELVVMQASGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G+ W + +N + + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGNILSVRTGVWARDANDFIFVAKIDNERLYGLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +V++ + + + + D
Sbjct: 180 QKQLRHVVFAEQVDYLGDNHWLMKQVQITDLQD-NVVLTKQYLDVYQWRTALAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + + + ++ R E + + P + M L+A S R
Sbjct: 239 TVKPEELALSGLYDYVHYLK-ASEQDASRYELALWRKLTQPFSIGVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y P A+ P ++ +++++++L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGFPPAFGAIAPSLVFLTIAVMLLRRK 355
>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 367
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 81/364 (22%), Positives = 143/364 (39%), Gaps = 6/364 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY L L ++ +I E+ +Q+G + S L R P +
Sbjct: 5 GRLERYVMGRMLAGVGAALAVISAVILLIQFVELSSQVGTRADVGASGIFALTLLRAPSL 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
IQ ++PF L I F LNR SELV RA G+S W+ + P + +LG+ V V+NP
Sbjct: 65 IQILLPFCFLFGGIGAFVGLNRKSELVAMRAAGVSAWRFILPSAALAAILGVLAVAVLNP 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-----NHIWE 177
A + + +N + + Q Q + + +
Sbjct: 125 FAAALNARFEAERARLMENYLGDRPQDVWIRQGDERTQIVIHAKDRETVAGAVVLKGVSV 184
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T + R +A A + +L+ V E G I S ++ + +
Sbjct: 185 FIYEKTPRGAPEFRRRLEAAEARLMPGFWRLRDVREAGVGESSIRSESLSIRSTLDAEAA 244
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + +F+ + + + ++ F +F L+ P++ AMT++AA+ SL
Sbjct: 245 MERFASPEAIAFWRLPAAIRLTEQAG-FSAAGYRLRFQQLLATPVLFAAMTVLAAAFSLR 303
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ GF+++ + K+ IL AAA P ++ + + +L
Sbjct: 304 LVRLGGLAGLAGAGVALGFVMFFFNQFAGALAKADILPLFAAAWAPTLVALLAGVTLLCY 363
Query: 358 KEDG 361
EDG
Sbjct: 364 TEDG 367
>gi|84387841|ref|ZP_00990856.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
gi|84377356|gb|EAP94224.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
Length = 356
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + VP
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVG-RGTYDLLQALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ + W + +N + + L ++W
Sbjct: 120 QWGAPQAQKMARDLRTISIAGGNIISTQSGVWARDANDFIFVVKIDDEKLYGLNMWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + + V++ + + + + D
Sbjct: 180 NKALKTAIYSEEVDYVGDNVWTMNDVEITSFEN-EIQITKESLPTYSWKTSLAPDKLAIV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +S+ ++ R E + I P+ + M L+A S R
Sbjct: 239 TVKPEELSLSGLYDYVSYLK-ASEQDASRYELALWRKITQPISIAVMMLMALSFIFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + P AL P ++ + ++I++L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGALAPSVVFLGIAIMLLRRK 355
>gi|327396303|dbj|BAK13725.1| inner membrane protein YjgQ [Pantoea ananatis AJ13355]
Length = 358
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 126/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T L L + L +I + + G+ YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQ-GAYSALDAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N I + +FT
Sbjct: 120 EFVAPQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNNFIYIERVKGDDEIDGVSIYNFT 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQK 239
+ + + ++ + +I ++ T + D
Sbjct: 180 DDRRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + I PL + M L+A S
Sbjct: 240 VALDPDALSITGLYDYSKYLKQSGQESG-RYRLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I L P+ A++P ++S+ +L+++
Sbjct: 299 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAISLFMLIKR 357
>gi|52425603|ref|YP_088740.1| hypothetical protein MS1548 [Mannheimia succiniciproducens MBEL55E]
gi|52307655|gb|AAU38155.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 356
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 72/363 (19%), Positives = 136/363 (37%), Gaps = 10/363 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L LL + L +I E +G+ +Y + + +P
Sbjct: 1 MMNTLDRYIGKSILGAIFATLLTLVGLSGIIKFVEQFRSVGK-GSYDSMQAFLYTVLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRMKIGFAVMKTALPLVLLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N I K E+ +
Sbjct: 120 EWGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNDFIYI-----KRATEDANLNNIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
+ + ++ A+ A N LK+V E Q I + + D
Sbjct: 175 IYSFNDNRQLQRVSHANKASYENGSWVLKQVNESQISADEIKTKNYLNRPWKTSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
F+ + S S + +SF ++ + + E ++ + P+ + M ++A S
Sbjct: 235 GIFTVKPTSLSISGLSSYISFLKETGQ-DSKKFELTYWRKLFQPISVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI GF+ Y I I + P+ AL+P +L + ++ +L +
Sbjct: 294 PLRSVTAGARIVTGICFGFVFYVINEIFGPLSLVYNVAPIIGALMPSLLFLVITWWLLSR 353
Query: 358 KED 360
K D
Sbjct: 354 KRD 356
>gi|269792897|ref|YP_003317801.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100532|gb|ACZ19519.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 356
Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 129/354 (36%), Gaps = 6/354 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
L + + +L+ L + S+ L +P ++ IP
Sbjct: 2 ILMELLGPFAFGVAAFTVLMVAGSLLFRIADLVIQRGVSLGVVVRLFLYYLPGVVVTTIP 61
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+L+ ++ F L+ SE+V +A G+ +++ P VV S L + T ++ + E
Sbjct: 62 MGSLLGALMGFGKLSSHSEIVALKACGVPFRRMVRPLVVASALASVVTFVLNETVVPLSE 121
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +++ + +++ + + + + +
Sbjct: 122 RAARNVLAYEIMRERPPEFKERMFLREEGSSGLRRVIYMDRIRPRTGEMEGVLVQEFEGG 181
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDGFQKFSEQ 243
++ A A+ + K +++ ++ +L + + + S
Sbjct: 182 RLSRLTSARRAVWRDGKWTMEEGKTFEVAPDGGVKFLYSFARESLRLDLSPARVEAQSTD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S +++ +++ + + F+ + +P + + L+ AS + RS
Sbjct: 242 PSQMSVFQMAEQIGLMERQGS-DATKLRVMFHLRLAVPWASLVLALVGASAGVRPQRSGG 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + F+ Y +++ +S G++ L PV AA +P ++ + ++ +
Sbjct: 301 AGVGLGLSVVIVFLYYVVLSFCQSLGEASYLPPVVAAWVPNLVFGVAGLFMVRR 354
>gi|49475338|ref|YP_033379.1| hypothetical protein BH05440 [Bartonella henselae str. Houston-1]
gi|49238144|emb|CAF27352.1| Hypothetical transmembrane protein [Bartonella henselae str.
Houston-1]
Length = 365
Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 186/362 (51%), Gaps = 5/362 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L +YFF YLK T YFL G +L +ID E ++ LP Y+ +++ R+P I+
Sbjct: 5 TLGQYFFIRYLKMTCYFLGGIFVLALLIDFTENSGRLSSLPRYTAKDAFLISVLRIPFIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+IPFI L + + +LNR SELV++R+IGIS WQ L P G+ L G+F++L++NP+
Sbjct: 65 QQLIPFIALFSAMAMLISLNRKSELVVTRSIGISAWQFLMPACFGAFLFGLFSILLVNPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ----KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
A G ++ +W+ + + I W+ IGAK I + D
Sbjct: 125 AAWGFSQAERMMTEWRSKNNNVLTSLHNTRILWLTQRTHSGRTTIGAKSITDQGLSLIDA 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + + I + ++ A + N L Y+ G P + + +K + +
Sbjct: 185 TFVQYNDNATIKNWINSRKATLINGAWLLTDGTIYKIGHPPEKFSELQIQTTLKPEFLTE 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A+ FY++ K+ + + + LI +P +L+AMTLIAA VSL F+
Sbjct: 245 RLVNPATIPFYQLPTKIMIARSFG-YSANNFDMYLQSLIALPALLIAMTLIAAVVSLNFT 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q +I++ G+ +GF LY I ++++FG +G + P+ AA PV + + L I LL KE
Sbjct: 304 RFGQSKILILGGVIAGFSLYVISILVQAFGNAGYIPPIIAAWTPVFIALFLGISFLLHKE 363
Query: 360 DG 361
DG
Sbjct: 364 DG 365
>gi|149190545|ref|ZP_01868815.1| predicted permease [Vibrio shilonii AK1]
gi|148835669|gb|EDL52636.1| predicted permease [Vibrio shilonii AK1]
Length = 356
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + T + L + L VI E +GE +Y++ +P
Sbjct: 1 MFRILDVYVGKTIITTIILVLSVFVGLSAVIKFVEQLRSVGE-GSYTMLSALYFVILGMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++V L +SELV+ +A GIS ++ + ++ L + + +
Sbjct: 60 RDIELFFSMAALLGSLVGLGMLASSSELVVMQAAGISKLRIGLSVLKTAVPLMVVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + +++ DL Q G W + +N I + + +IW
Sbjct: 120 EWGAPTTQQMARDLRLQATSGGSIVSVRNGVWARDANDFIFISKVNGESVEGLNIWRFGE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + ++++ + + + D
Sbjct: 180 NKQLKETVFAESADYLGDNRWEMHRIQITDMKN-DEALSKETLDKQVWETSLVPDKLAIV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + S R E F+ P+ + M L+A S R
Sbjct: 239 TVDLNELPLSGLWDYTQYLKDS-EQDASRYELAFWRKATQPISVAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + P+ AL P ++ +++++L+L +K
Sbjct: 298 SVTMGARILSGVIAGFTFYISSEFFGPVSLVYGMSPLFGALGPSLVFLTIAMLLLRRK 355
>gi|146283385|ref|YP_001173538.1| permease [Pseudomonas stutzeri A1501]
gi|145571590|gb|ABP80696.1| predicted permease [Pseudomonas stutzeri A1501]
Length = 353
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L + L + + + +Y + P
Sbjct: 1 MVK-LDRYIGIHVFLAILMVLGIIVGLALLFAFIDELGDV--QGSYGLGDALQYVLLTSP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ L +SEL I RA G+S+ +++ + ++L + +L+
Sbjct: 58 RRLYEMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + G+ Q S W + N + + + T
Sbjct: 118 EYVAPLSEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHV-----NAVQPGGVLVGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D++ +++ A A D +L+ + + + ++ +
Sbjct: 173 RYRFDEERRLLSSSFARRASYQGDHWRLENIATTHFRGDHTEVMRAPEERWDVQLTPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S + + + + + +N R F+ ++ P + VA+ L+A S
Sbjct: 233 GTVVMEPEALSITGLWRYIHYLGEQG-LNNSRYWLAFWTKVLQPAVTVALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 292 PLRSVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351
>gi|37528300|ref|NP_931645.1| hypothetical protein plu4479 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787738|emb|CAE16851.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 359
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 78/362 (21%), Positives = 141/362 (38%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I E ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVEQLRKVGQ-GEYTTISAGLYVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAGSVMKTAIPLVILTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G ++ W D + + +
Sbjct: 120 EWVAPQGEQMARNYRAQKMLGGSLVSTNKGMWTID---GDDFIYIQRIVSDTEIKGVNIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDG 236
DKK + + + ND KL +V E S ++ K +
Sbjct: 177 HFNDDKKLLSVKYAASAVYDKDNDLWKLSQVEESDLTDSKKITGSQRISADWKILLTPEQ 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + S + + + + +S R + + I PL + M L+A S
Sbjct: 237 LNVVALEPEALSISGLYQYIKYLKQSEQESG-RYQLNMWKKIFAPLSVAVMMLMALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + V AAL+P +L +++SI +LL
Sbjct: 296 GPLRSVPMGVRIVTGISFGFLFYVLNEIFGPLSLVYSVPAVLAALLPSLLFLTVSIYLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|317046772|ref|YP_004114420.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
gi|316948389|gb|ADU67864.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
Length = 358
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 126/363 (34%), Gaps = 11/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ Y+ VP
Sbjct: 1 MFKVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKTGQ-GAYTALDAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGNLAQRSELVVMQASGFTRMQVALAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N I + +F+
Sbjct: 120 EFVAPQGEQMARNYRAQQLYGGALVSTQNGLWAKDGNSFIYIERIKGDNQIDGVSIYNFS 179
Query: 181 SITIDKKNKI-----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + D+ LK + + S + D
Sbjct: 180 EQRRLLSVRYAATATWDNAKKLWVLSQVDESDLKDAKQITGSQSL----SGEWKTNLTPD 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + +S R + + I PL + M L+A S
Sbjct: 236 KLGVVALDPDALSIRGLYNYSKYLKQSGQ-EAGRYQLNMWSKIFQPLSVAVMMLMALSFI 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + V GI GF+ Y + I + P+ A++P ++S+ ++
Sbjct: 295 FGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGIPPILGAVLPSAAFFAISLFLM 354
Query: 356 LQK 358
L++
Sbjct: 355 LKR 357
>gi|15599022|ref|NP_252516.1| hypothetical protein PA3827 [Pseudomonas aeruginosa PAO1]
gi|116051855|ref|YP_789302.1| hypothetical protein PA14_14510 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889889|ref|YP_002438753.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|254236731|ref|ZP_04930054.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387657|ref|ZP_06877132.1| putative permease [Pseudomonas aeruginosa PAb1]
gi|313109246|ref|ZP_07795214.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
gi|9950002|gb|AAG07214.1|AE004800_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115587076|gb|ABJ13091.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168662|gb|EAZ54173.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770112|emb|CAW25874.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|310881716|gb|EFQ40310.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
Length = 355
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 14/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + N + +Y I P
Sbjct: 1 MVK-LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV
Sbjct: 58 RRAYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + GD Q S W + + N + T
Sbjct: 118 EYVAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGR-----EYIHINAVQPNGVLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MD 235
D++ + A A D +L++V L
Sbjct: 173 RYRFDEQRGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQ 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 LLNTVVMEPEALSISGLWQYIHYLADQG-LNNNRYWLAFWTKVLQPLVTAALVLMAISFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ GF+ ++ P+ A +IP + + +L
Sbjct: 292 FGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLL 351
Query: 356 LQ 357
+
Sbjct: 352 RR 353
>gi|319407067|emb|CBI80704.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
Length = 363
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 119/360 (33%), Positives = 195/360 (54%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+PLI+
Sbjct: 5 TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLAFLPHYTAKGAFLISLLRIPLIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L INP+
Sbjct: 65 QQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A +I +W+ N + IPW+ I +GAK I+ ++ D T
Sbjct: 125 AAWSSFQAEKMIAEWRSNNAQTSITGTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + + + A + + L Y+ G+ P + +K + ++
Sbjct: 185 VQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ FY + KK++ + + + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 245 TDPITIPFYNLPKKIAVARSLG-YSANKFDMHLQSLIALPMLLVAMTLIAATVSLKIPRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL EDG
Sbjct: 304 GQSRTLILGGVIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFAISFLLYTEDG 363
>gi|254467255|ref|ZP_05080666.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206688163|gb|EDZ48645.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 367
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 12/340 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + +L+ L M LV +IDLNE + E + + L+ +P +
Sbjct: 3 LDLYYARRFLQWFLVICAVLMTLVILIDLNEQIRRF-EGAGLGLPQLVGLSLLNIPAALS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + +G+ V ++NPIA
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLAAAGIGVLAVTMLNPIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
+ DL + + + G S W++ + I AK + D +
Sbjct: 122 AATANRYQDLAETYHNGGPSALSLSGEGLWLRQGGARGQSVIHAKGYSGDAADITLHDVS 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKM 234
+ R A+ A + L + + L +
Sbjct: 182 IHAYSTAGGPVRRIIAESARLDGSNWILTNAKSWPLTAGINPEAGAASHDELQLPTTLTT 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + S Y++ + + + F R E ++ + PL L+AM L+ AS
Sbjct: 242 DRIRDTLGTASGISIYDLPATIRELSAAG-FTTKRYEVRYQAELARPLFLIAMVLVGASF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
++ +R + V + GF LY I + G++G +
Sbjct: 301 TMRHARFGGTGLAVLMAVLLGFGLYFIRNFAQILGENGQI 340
>gi|254242518|ref|ZP_04935840.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195896|gb|EAZ59959.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 355
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 14/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + N + +Y I P
Sbjct: 1 MIK-LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV
Sbjct: 58 RRAYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + GD Q S W + + N + T
Sbjct: 118 EYVAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGR-----EYIHINAVQPNGVLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MD 235
D++ + A A D +L++V L
Sbjct: 173 RYRFDEQRGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQ 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 LLNTVVMEPEALSISGLWQYIHYLADQG-LNNNRYWLAFWTKVLQPLVTAALVLMAISFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ GF+ ++ P+ A +IP + + +L
Sbjct: 292 FGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLL 351
Query: 356 LQ 357
+
Sbjct: 352 RR 353
>gi|221133511|ref|ZP_03559816.1| predicted permease [Glaciecola sp. HTCC2999]
Length = 354
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFSIIDIYIARTLLSTIFVTLSTLVGLSALIKFVEQLRKVGE-GDYDLIVAGLFVFFSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+Q P TL+ ++ L SEL++ +A G+S W ++ + ++++ +LV
Sbjct: 60 RDIEQFFPMATLLGGLIGMGVLASNSELIVMQASGMSKWNIIQSAMKCAVVMVCIILLVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E + + G S+ I W + + I + D T
Sbjct: 120 EFLTPVSEAKAKQIRTEALSGGQVFTSNKIVWTKDGSDFVSIGNVFNQ-----ENLGDVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
+ + A A + L+ V I N T + D
Sbjct: 175 IYKFNDDLDLTQIIAAKRATFVEESWALQDVHITYINDQRISTNRISLTEWRAALTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S + + + + ++N + R E + I+ P+ + M L+A S
Sbjct: 235 SVATVKPEALSIQGLYEYVGYL-QNNQQDSTRYELAMWRKILQPVSVCVMLLMAFSFVFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G +GF + + F L P+ A++P L +++L+L +
Sbjct: 294 SLRSTTMGSRIIVGTLTGFSFFIANEVFGPFAMVYNLPPMLGAIVPSALFAGVAVLLLRR 353
Query: 358 K 358
+
Sbjct: 354 Q 354
>gi|218710647|ref|YP_002418268.1| hypothetical protein VS_2727 [Vibrio splendidus LGP32]
gi|218323666|emb|CAV19977.1| hypothetical permease [Vibrio splendidus LGP32]
Length = 356
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVG-RGTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G + W + +N I + ++ ++
Sbjct: 120 QWGAPQAQKMARDLRTISVAGGSIISTQSGVWARDANDFIFIVK-----IDDDKLYGLNM 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDG 236
+ K ++ + ++ ++ V + + + + D
Sbjct: 175 WRYDENKALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSLAPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + +S+ ++ R E + I P+ + M L+A S
Sbjct: 235 LAIVTVKPEELSLSGLYDYVSYLK-ASEQDAARYELALWRKITQPISIAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G+ +GF Y + P A+ P ++ ++I++L
Sbjct: 294 GPLRSVTMGARILSGVIAGFTFYISSEFFGPISLVYQIPPAFGAIAPSVVFFGIAIMLLR 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|242240954|ref|YP_002989135.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
gi|242133011|gb|ACS87313.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
Length = 356
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/362 (20%), Positives = 142/362 (39%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ +YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GSYSVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGNLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N I + +
Sbjct: 120 EWLAPPGEQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQR-----VQGENELVGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDG 236
D ++K++ + A A+ N +L +V E S T++ K D
Sbjct: 175 IYHFDNQSKLLSVRYAASAVYENGVWQLSQVEESDLRSNKQISGSQTISGEWKTGLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + +++ +S R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLYDYINYLKQS-DQEASRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV AL+P L + +SI++LL
Sbjct: 294 GPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYRIPPVLGALLPSALFLFISIMLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
Length = 359
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 133/357 (37%), Gaps = 8/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY YL+ L + + VID E + + A ++P
Sbjct: 1 MSILTRYIASAYLRVFWLCLASFIAIYLVIDFLEKIGRFLRF-DPQWIHVAQFFLYKIPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q+IP L+ ++ L+R SE++ R+ G+S+ ++ P + + +F ++
Sbjct: 60 IATQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFVIVSNE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + + I + + A+ P++ T
Sbjct: 120 LILPKTYSQMRFIEEVLIRKK--SSNTFLRQNNIWHKDNKAILMARAFDPDHQTLRGVTL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDGF 237
+ + R DA+ + L KV + S +N+ ++++
Sbjct: 178 WSFSEGMTPSRRIDAEQGSWDGGQWTLWKVTVRDFQGGGVANTTQIASMPVNLNLQIEDL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + F ++ + + + R E Q + I +P + M + +L
Sbjct: 238 KVVDKYADNMGFLKLREYIQKLK-KGGYETTRYEAQMHSKISLPFASLIMAFLGIPFALR 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SRS+ + + I GF + I I+ SFG++G+L + +A ++ I +
Sbjct: 297 GSRSSGVALGIGASIGFGFAYFIINAILISFGQTGVLPSLVSAWAANVIFALSGIWL 353
>gi|304396397|ref|ZP_07378278.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
gi|304355906|gb|EFM20272.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
Length = 358
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 128/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ +YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQ-GSYSALSAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A SGE++ + Q G + W + N I + +F
Sbjct: 120 EFVAPSGEQMARNYRAQQLYGGALVSTQNGLWAKDGNSFIYIERIKGDNEIDGVSIYNFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + D ++ + +I ++ S + D
Sbjct: 180 DQRRLQSVRYAATATWDKDKKRWLLSQVDESNLTDPKQITGSQSLSGEWKTNLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R E + I PL + M L+A S
Sbjct: 240 VALDPDALSIRGLHSYSKYLKQSGQ-EAGRYELNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I L P+ A++P ++S+ +L+++
Sbjct: 299 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAISMFMLIKR 357
>gi|148977743|ref|ZP_01814299.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
gi|145962957|gb|EDK28227.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
Length = 356
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVG-RGTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGFSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ + W + +N I + ++ ++
Sbjct: 120 QWGAPQAQKMARDLRTISIAGGNIISTQSGVWARDANDFIFIVK-----IDDDKLYGMNM 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDG 236
+ K ++ + ++ +K VV + + T + D
Sbjct: 175 WRFDENKALKTAIYSKEVDYVGDNVWTMKDVVVTSFENELQITKENLPTYTWKTSLAPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + +S+ ++ R E + I P+ + M L+A S
Sbjct: 235 LAIVTVKPEELSLSGLYDYVSYLK-ASEQDAARYELALWRKITQPISIAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G+ +GF Y + P L P ++ + +++++L
Sbjct: 294 GPLRSVTMGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGVLAPSVVFLGIAVMLLR 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|107103347|ref|ZP_01367265.1| hypothetical protein PaerPA_01004416 [Pseudomonas aeruginosa PACS2]
Length = 355
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 14/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + N + +Y I P
Sbjct: 1 MVK-LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV
Sbjct: 58 RRAYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I + GD Q S W + + N + T
Sbjct: 118 EYVAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGR-----EYIHINAVQPNGVLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MD 235
D++ + A A D +L++V L
Sbjct: 173 RYRFDEQRGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVIKLPTERWDAQLSPQ 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 LLNTVVMEPEALSISGLWQYIHYLADQG-LNNNRYWLAFWTKVLQPLVTAALVLMAISFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ GF+ ++ P+ A +IP + + +L
Sbjct: 292 FGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLL 351
Query: 356 LQ 357
+
Sbjct: 352 RR 353
>gi|88810479|ref|ZP_01125736.1| putative permease [Nitrococcus mobilis Nb-231]
gi|88792109|gb|EAR23219.1| putative permease [Nitrococcus mobilis Nb-231]
Length = 358
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 120/361 (33%), Gaps = 12/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + TL LL + L + + + +Y++ + P
Sbjct: 1 MKLIDRYIARNVTAGTLIVLLVIVSLDLLFNFLKESQD-SGQGDYTVWLALLYVLLTTPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q PF TL+ +++ L SELV+ R G+S + P V+ + L + + V
Sbjct: 60 SAYQAFPFATLIGSLIGLGGLAARSELVVMRGTGMSALTIARPLVMAGLSLALLAMGVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +++ +L + + W + + +
Sbjct: 120 WLAPRTDRLATELQTRAVGGQLSAGGESGFWARDGDR------YVHARQVPEADVLEDLQ 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGF 237
I + ++ H A A L V + + S +K D
Sbjct: 174 IYAFQGVRLDHITTAWRAHYEQGVWMLLAPVTTHFAADGSVRVSRAASARYRSELKPDML 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ ++ + ++ + R F+ + PL V M L+ +
Sbjct: 234 DVVVVEPEVLPITQLWIYTRYLERNG-LDSSRYRLAFWVKVATPLATVTMLLLTVPLVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ G + + ++ L P+ +AL P +L + +++ L++
Sbjct: 293 SLRSANMGQRIFIGVLIGIAFFLLNRLLNRAAMVFGLPPLVSALGPTVLFLGIALGSLVR 352
Query: 358 K 358
Sbjct: 353 L 353
>gi|167646491|ref|YP_001684154.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348921|gb|ABZ71656.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 367
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 141/363 (38%), Gaps = 8/363 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY K L + L +LV +I +I +G L + P I
Sbjct: 7 IERYVLKKTLGSLAAALAVVSVLVMLIAFVDISKSVGTRAEVGFGELLFLTVLQAPATIL 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ PFI L + F LNR SEL+ RA G+S W+ + P V + ++G+ T+ ++NP+
Sbjct: 67 LLTPFIFLFGTLGAFVGLNRRSELIAMRAAGVSAWRFIMPAAVAAFVMGLLTLTLLNPLT 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE------D 178
+ +N K W++ + + + I A+ N
Sbjct: 127 AAMSAQFETSRNAMMENYLKSAPK-GLWLRQGDDKTQVVIRARARDQINGAVRLRGVSLF 185
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + + R +AD A + +L V G I + TL +
Sbjct: 186 VYAVQPNGALQFSQRIEADEARLEPGFWQLSGVRVAMPGAGAIRSETYTLPSNLDDRTAS 245
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + + + + + + ++ PL+ AM+++AA+ SL
Sbjct: 246 ERFSNPQAIAVWRLPETIKRTEAAGFSSIP-FRLRLQQVLATPLLFAAMSVLAAAFSLRL 304
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + G+ GF + + + GK+ +L P AA P I+ + + +L
Sbjct: 305 MRLGGLAGLAGAGVTLGFAFFFFNELCGALGKADVLTPAMAAWTPPIVALLAGLTLLCYT 364
Query: 359 EDG 361
EDG
Sbjct: 365 EDG 367
>gi|54307699|ref|YP_128719.1| putative permease [Photobacterium profundum SS9]
gi|46912122|emb|CAG18917.1| putative permease [Photobacterium profundum SS9]
Length = 356
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 125/361 (34%), Gaps = 9/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGD-GTYDLWKALIYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +++
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L W G+ W + FI ++ ++ +
Sbjct: 120 QWGAPQAQKSARELRAIWTSGGNILSVQSGVW----AKDGNDFIYIGRVHEQSTLNAVNI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGF 237
DK + L V + + ++ + D
Sbjct: 176 WQFDDKNTLSKMVFAKSASFTEQQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDKL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +S+ +S R E F+ ++ P+ + M L+A S
Sbjct: 236 AIVMVKPEELALSGVYDYVSYLKES-KQDASRYELAFWRKLLQPISIAVMMLLALSFVFG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF Y + L P AL P I+ + ++I +L +
Sbjct: 295 PLRSVTMGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSIVFLFITIYLLRR 354
Query: 358 K 358
K
Sbjct: 355 K 355
>gi|121601841|ref|YP_988822.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
gi|120614018|gb|ABM44619.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
KC583]
Length = 363
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 126/360 (35%), Positives = 193/360 (53%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYFF YL+ T YFLLGA IL F+ID E +++ LP+Y+ +++ R+PLI+
Sbjct: 5 ILGRYFFIQYLRITCYFLLGAFILAFLIDFIENSSRLTSLPHYTTKGALLISFLRIPLIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LNR ELVI+R+IG+S WQ L P G+ LG+ + + NP
Sbjct: 65 QQLFPFIALFSAITMLISLNRKFELVIARSIGVSAWQFLMPACFGAFFLGLVAIFLFNPF 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDI--IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G +I +W N + + IPW IGAK I E +
Sbjct: 125 AAWGYSQAEKIIAEWHSNNVQTSLNNHRIPWFTQHTDLGTTTIGAKSITDEGLSLINAIF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I + A A + N L Y+ G IP + +K + ++
Sbjct: 185 VQYNEDATIKNWIHAQKATLTNSAWFLTHGTIYKTGHIPEKFAEFWIETNLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ SFY++ KK++ + + + + LI +P +LVAMTLIAA+VSL+F+R
Sbjct: 245 ADPATTSFYKLPKKIAVARSFG-YSANKFDMYLQSLIALPALLVAMTLIAATVSLKFTRL 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY I ++++FG +G + P+ AA +PVI+ + L I LL KEDG
Sbjct: 304 EQSGKLILSGVIAGFVLYVISVLVRAFGNAGYIPPIIAAWVPVIIALFLGISFLLHKEDG 363
>gi|220932597|ref|YP_002509505.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993907|gb|ACL70510.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 1040
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/363 (19%), Positives = 144/363 (39%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K L L + + ++ + L + + + ++ L ++P
Sbjct: 7 KRIIDVYIIKEVLYPFLIG-VSIIGVIMLSGLLRQLSDLIIIKKIPVAVVLKLLLYQLPE 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II Q P L + LNR +E R GIS+++L+ P ++ I++ T L+
Sbjct: 66 IIVQTFPIAILFATMSGMGRLNRENEFTALRMGGISLYRLILPLLILGIVISGMTYLLNE 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + ++I++ + + + + + E++I +
Sbjct: 126 EIVPWTKHRAQNIIRKSVLKEVPPDIKENVFFKGPDGR---LFYVGRFDKEDNIMKKIVV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDG 236
T N A+L +Y +K LKK ++Y + + I ++
Sbjct: 183 YTFKGDNGYPLIVTANLGEVYKEKWVLKKGFIHRYNGEGHLTMETRFDVMEIKINTEVHN 242
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + S E+ K++ S I + ++ + +PL + LI +SL
Sbjct: 243 FFADQKTPDEMSREELKKEIDLFQNSGI-DVHSLLVDYHLKLSMPLAALIFILIGTPLSL 301
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + I F+ Y ++++ +SFG++G L PV AA +P I+ + I +L+
Sbjct: 302 TSK--DSRSFSIIFTIVVVFLYYFVMSLSRSFGRNGRLDPVLAAWLPNIIFSIIGITLLI 359
Query: 357 QKE 359
+E
Sbjct: 360 WRE 362
>gi|52842835|ref|YP_096634.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629946|gb|AAU28687.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 356
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLG-RADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + G + W++ N I + +
Sbjct: 123 IVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSI-----ASVTHENTLRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKAHHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLRE-QQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|325578599|ref|ZP_08148699.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
gi|301156461|emb|CBW15932.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
gi|325159835|gb|EGC71965.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
Length = 359
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 126/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RY K L L + L +I E +G+ +Y I + +P
Sbjct: 2 LMNTLDRYIGKSILGAIFATLFTLVGLSAIIKFVEQFRSVGK-GSYDIWQAVAYTGLTIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 61 KDVETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGLAVMKTALPLVLFTMIIG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N + E+ F
Sbjct: 121 EWGIPQTEQFARDMRTRALSGGSMLSVKNGVWAKDGNNFVYVRRITDDAQLEDIYIYTFD 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K ++ ++ + ++ + + D
Sbjct: 181 EQRNLTHLKHANQAQYSAENNQWQLRQVNNSAVSKEQITTTNRLTEDWATSLTPDKLGAV 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + + ++F ++ + R E ++ I PL + M ++A S R
Sbjct: 241 SLRPTSLSISGLYEYIAFLKQTGQ-DSRRFELTYWRKIFQPLSVGVMMMLALSFIFGSLR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I AL+P +L +++ +L +K D
Sbjct: 300 SVTAGARIVTGICFGFLFYVVNEIFGQMSVVFNAPAFLGALMPSLLFMAIIWWLLARKRD 359
>gi|86609823|ref|YP_478585.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558365|gb|ABD03322.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 400
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/373 (14%), Positives = 117/373 (31%), Gaps = 19/373 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY L L+ + LV + ++ S+S + R P I
Sbjct: 26 GLMDRYVLSEMLLPFLFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ +E+ R G+S+++L+ P +V S+L+ T L
Sbjct: 86 IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLMVPALVLSLLVTTLTFLFNEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD------------IFIGAKKIL 170
+ + + + + + + I + + +
Sbjct: 146 VVPVSNRQAATTLNRALNRDPDFRRENILYQEFGEILMPEPDGTFSRRQGLTRQFYARSF 205
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNS 225
+ ++ I + + Y +
Sbjct: 206 DGKQMRGIIVLDFSNEALNQILLAQRGRWDPQENLWVFEDGTNYIVSPDGTYSNIATFSR 265
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLML 284
L +P + + E+ + S R + IP
Sbjct: 266 QELRLPRAPLELAQEIRSPEEMNIRELKHYIEVIASSGDLQRVRRLQVSLNQKYAIPFAC 325
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+A TLI + L R+ + + + F Y ++ I ++ G+ G L P AA +P
Sbjct: 326 LAFTLIGVPLGLRPQRTGS-SLGLGISVLIIFAFYVLLFITQALGQIGTLGPATAAWLPN 384
Query: 345 ILTISLSILILLQ 357
+ + + +L +
Sbjct: 385 FICAVVGLGLLHR 397
>gi|313892370|ref|ZP_07825962.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
gi|329121341|ref|ZP_08249967.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
gi|313119229|gb|EFR42429.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
gi|327469750|gb|EGF15216.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
Length = 361
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 120/360 (33%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L L+ + + D S + +P
Sbjct: 1 MRILDKYILKEFLGPFLFGVAAFTAIFLGSDTLLSIAGFITKYGASSLSAIKIFILAIPR 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ ++ +L+ SEL++ R G S +L P + S ++ I +
Sbjct: 61 IIVYTFPMAVLLGALMCMSSLSGASELIVMRNSGQSFLRLAMPIFIFSAIISICAIAFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ M+ + + K +
Sbjct: 121 FVVPWTNREYQYILDVEIKKNLNPDIVDNIVMKDIQDGNLLHLIYAKKYNPETKELKDIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGF 237
I K K + + + A+ K+ V Y ++ +S + K D
Sbjct: 181 IQEFKDGKPVKIEMSPKAVWKEGVWDFKQGVAYDITPDGVEHKLSFDSQAVPFIQKPDEI 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S E+ K +N + + +P+ + +I A + +
Sbjct: 241 KNSNNNVGEMSISELKKTADLLKSANQ-DPTSFYMEIHKRFSLPIASLVFAIIGAPLGIR 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + F+ Y ++T M++ G+ IL P AA +P ILT + ++ +
Sbjct: 300 KQRSSSSIGFGIS-VIVIFIYYAVMTFMEAMGEGHILPPFAAVWLPDILTFLIGCYLVRR 358
>gi|220932585|ref|YP_002509493.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993895|gb|ACL70498.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 365
Score = 144 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/364 (14%), Positives = 129/364 (35%), Gaps = 8/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I++RY + + L+ + + D+ ++ + L ++P
Sbjct: 1 MKIIYRYLTRELIMPFLFGVAAFTAIFIGTDILFTLTRLYNNFGVEFTTLVQLFFLKLPP 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P TL+ ++ F L+ E+ RA G+S+++++ P ++ +++ + T++V
Sbjct: 61 IIVLTFPMATLMGTLMSFGRLSGDGEITAFRAGGVSVYKIVIPSLLVGLIMSVTTIMVNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI---SNPQQDIFIGAKKILPENHIWED 178
+ + ++ + K+ + + + D + + E I D
Sbjct: 121 MVVPRANYLYDQIVWEIKNGRKMPATQYDLTLTPLDRKYRRPDYILYTHRFNGETGIMND 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKM 234
+K + K + + Y +
Sbjct: 181 VYLQDYEKGVPVTLIKARKAVWQGDKWHFYNGNIYYFKEGERVPALKFNEYVIKQPIYTP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K ++ SF E+ + + F + + +++ I IP L+AA +
Sbjct: 241 RRIGKMNKDIEDMSFKELGEYIQFLEEQG-KDTFEERVKYHQKIAIPFASFIFALLAAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS + I F+ YTI+T+ + G+ G + P A + + + + +
Sbjct: 300 GIKPRRSGGTATGMGLSIIVIFIYYTIMTLGSALGERGTISPFFGAWLQNFIFLIVGGYM 359
Query: 355 LLQK 358
+ +
Sbjct: 360 IYRM 363
>gi|95928710|ref|ZP_01311456.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
gi|95135055|gb|EAT16708.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
Length = 360
Score = 144 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 63/363 (17%), Positives = 139/363 (38%), Gaps = 11/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + K T L + + ++D E + E + A ++PLI+
Sbjct: 3 LIQRYLLTTFTKITSLSLAAFVGIYLLVDFFEKVDDFLE-HEAAAHLYIAYFAWKIPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P L+ + +T+EL RA GI + +++ PF+V ++LL + +
Sbjct: 62 SQMLPLTILLGTFLTLGGFTKTNELTAMRAGGIGLQRIVTPFLVTAVLLTGINFALNEFL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + + + + + + + + + LPE +
Sbjct: 122 VPVGTQRSNHIFRTEVKGKTQMLAKRN---DLWFREANTLYHIQLALPEKKQLRGISLYL 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKMDGF 237
+D + ++ R +A A D+ + + V + ++N L + + F
Sbjct: 179 VDSQLNLLTRIEAQAATFKEDQWQAEHVTVRHFDPQSRQLTAQKEENLRLLPLKKTPEDF 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + SF ++ K+S + R + + P + M +A +L+
Sbjct: 239 GTVSGKNEELSFTQL-SKISTQMQREGLDATRYRVDMHSRLSTPFACIIMAFLAIPFALQ 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR+ + ++ + G + + + + + G S +L P AA I+ + + +LL
Sbjct: 298 KSRNVNLSLGISISVLIGISFFIVQSTLIALGYSTVLPPFIAAWAANIIFALVGLFLLLS 357
Query: 358 KED 360
D
Sbjct: 358 TRD 360
>gi|332290236|ref|YP_004421088.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
gi|330433132|gb|AEC18191.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
Length = 356
Score = 144 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 68/361 (18%), Positives = 124/361 (34%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L + L +I E +GE NY ++ +P
Sbjct: 1 MFNTLDRYIGKTILATIFVVLFLLVGLSAIIKFVEQFRAIGE-GNYDTAKAIAYTLLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ +L SELV+ +A G S +Q+ + +I L I + +
Sbjct: 60 KDIETFFPMAALLGALIGLGSLASNSELVVMQASGFSRFQIGLSVMKVAIPLIILNMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ ++ + G W + N I +P+ +
Sbjct: 120 EWGIPQTEQFAREMRYKSLTGGSLLSVKGSVWAKDGNSFVYIQH-----IPKENQLNGIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D+ + A+ A N++ + ++ E + I I D
Sbjct: 175 IYQFDQNRNLQKMSQANRATYANNEWRFNQISESELNGDHITNKKYLNKVWQTSITPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + + S + + F + E ++ ++ P+ + M L+A S
Sbjct: 235 GMVSLRPSMLSITGLSDYIQFLKNTGQ-DTKTFELTYWRKLLQPISISVMMLLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + V GI GF Y + + + P AL P I ++ ++
Sbjct: 294 PLRSVTSGVRVIIGICCGFAFYVLDQVFGPLSLVYNIPPFIGALAPSIFFAAIIWWLMAH 353
Query: 358 K 358
K
Sbjct: 354 K 354
>gi|114319721|ref|YP_741404.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226115|gb|ABI55914.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 117/361 (32%), Gaps = 7/361 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + + L L+ M L V + +G +Y P
Sbjct: 1 MIRLLDRYLIITVVASALVALVVIMSLDLVFSFVDEGGDIG-TADYGPLSALAYVLLSSP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ PF TL+ ++ L +EL + RA G+S+ Q+ G ++L + + +
Sbjct: 60 SRAYEAFPFATLIGALMGLGALAARNELTVMRAAGVSVLQIARAVAAGGLVLALIAMAMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E+ +L W + ++ E F
Sbjct: 120 EWVVPPAERAATELRASAMARDVGISGAGGLWARDGGQFIEVRRARSPAHLEGLTIYHFE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
+ + A+ + + L++ E I + +
Sbjct: 180 ERDGEP-MTLRRVLSGSEALFRDGRWILREPGEVHLHADGISVADLGDEKVWESALSPAV 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S ++ + + +N + F+ + P+ +AM L+ +
Sbjct: 239 LDVVVVDPESLSMADLRTYIGYLE-ANELDSGEWRLAFWVKVATPISTLAMLLLTIPLVF 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G+ G + + ++ G L P A+AL+P ++ IL +L
Sbjct: 298 GAVRSTGAGQRIFIGVLIGVAFFLVNRMLNHAGVVFGLPPSASALLPAFAFLAAGILGIL 357
Query: 357 Q 357
+
Sbjct: 358 K 358
>gi|300114326|ref|YP_003760901.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
gi|299540263|gb|ADJ28580.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
Length = 354
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + TL L + L + +GE NY + +P
Sbjct: 1 MKILDRYIAKAVISYTLLVLFILIALYTFLQFITELEDVGE-GNYGVMGALRYTTYSIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++P L+ +++ L SELV RA G S+ ++ + ++ I TVL+
Sbjct: 60 HIYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIATVLMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ L K + + W + + N +E
Sbjct: 120 VVAPPAQQAANKLRSLAKTGHLSEDGEQGFW-----SRNGNNFNHVGRVLPNGQYEYIEI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQ 238
D + ++ A AI + D L V + + +
Sbjct: 175 FEFDNQRRLRIVTQATRAIYHKDGWHLYDVTQRLISTEGIITRRLEEALWESGLSPEMLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + + + +S + + F+ IV P + M +A
Sbjct: 235 VVMVDPQQLSAWGLYRYIGYLQQS-KQAAEQYQQAFWSKIVAPFSTLIMMFLAIPFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G G + + G P A P +L ++L +++L +
Sbjct: 294 LRSVSVGQRILVGALVGIGFFLFNRLFNQLGLVFDFSPWLGAAFPSLLCLALGVVMLRRI 353
>gi|146313280|ref|YP_001178354.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
gi|145320156|gb|ABP62303.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
Length = 360
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + +P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSIPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLMSTQQGLWAKDGNNFVYIERVKGDDELGGVSIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D A ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDSANRVWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I P+ + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +LL++
Sbjct: 302 SVAMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPLIGALLPSASFFLISLWLLLRR 359
>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
DSM 2380]
Length = 362
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 60/365 (16%), Positives = 126/365 (34%), Gaps = 10/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY + + + L +++ E + E + S++ + P
Sbjct: 1 MTPLYSRYILATFFRLFGLAIGAFAGLYLLVEFFERIDDFIEY-HASVTLCVAYFLNKTP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LII Q+ P L+ + R+ ELV A GIS+ ++ P + +L + +
Sbjct: 60 LIITQVAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAAN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + ++ G +I + ++I P + T
Sbjct: 120 EVIVPPSIQRARHILTTEVRGGPAVHYKQD---KIWLRHNRSILNIRQIEPVQQTLKGIT 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKM 234
++ DK +I R DA A+ + + V ++ ++P+
Sbjct: 177 LLSFDKNFRIQQRFDAGSAVYSGGRWYCQDAVTRRFDTTSGNLLTEQRLAEKIEDLPVVP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ + ++ K ++ R + + I P + MT +
Sbjct: 237 EDFKVPGSKRNEDLPISEFHRLGKKLKREGYNPTRFQVDMHARIAAPFGCLMMTFLGIPF 296
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R + +A + G + + + + +FG SG P+ AA IL + +
Sbjct: 297 AIRKGRGASMALGIAISVAIGALYFILNATLLAFGYSGTFPPIIAAWSANILFLLFGTWL 356
Query: 355 LLQKE 359
L E
Sbjct: 357 FLHSE 361
>gi|254507394|ref|ZP_05119529.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
gi|219549650|gb|EED26640.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
Length = 356
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 55/358 (15%), Positives = 117/358 (32%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +G+ +Y + +P
Sbjct: 1 MFKILDLYIGRTIIATTSMVLATLIGLSSIIRFVEQLRSVGK-GSYDLLNAFYFVLLGIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++ L +SELV+ +A G S + + +I L + +L+
Sbjct: 60 RDIELFFAMSALLGALIGLGILASSSELVVMQASGYSKLDIGLSVLKTAIPLMLIIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ +L G W + + I L +W
Sbjct: 120 EWGAPQAQKMARELRSFSISGGQIVSVRAGVWARDVDDFIFIGKVEDDTLYGVKVWRFDD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + ++ + + + D
Sbjct: 180 EKKLYQVMFAPEADYLGDNQWLMKNAEITDM-ADKVELAKSKVKEYAWKTTLVPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + +++ ++ R E + + P+ + M L+A S R
Sbjct: 239 KVEPEELAMSGLYDYVTYLK-ASEQDASRYELALWRKVTQPISIAVMMLLALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V G+ +GF Y + P A++P ++ ++L++++L +K
Sbjct: 298 SVSMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPAVGAVMPSLVFLTLALMLLRRK 355
>gi|54298618|ref|YP_124987.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
gi|148358636|ref|YP_001249843.1| permease [Legionella pneumophila str. Corby]
gi|296108274|ref|YP_003619975.1| permease [Legionella pneumophila 2300/99 Alcoy]
gi|53752403|emb|CAH13835.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
gi|148280409|gb|ABQ54497.1| permease [Legionella pneumophila str. Corby]
gi|295650176|gb|ADG26023.1| permease [Legionella pneumophila 2300/99 Alcoy]
Length = 356
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLG-RADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + G + W++ N I + +
Sbjct: 123 IVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSI-----ASVTHENTLRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLRE-QQRNHQNVSNYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|307129164|ref|YP_003881180.1| hypothetical protein Dda3937_01300 [Dickeya dadantii 3937]
gi|306526693|gb|ADM96623.1| conserved inner membrane protein [Dickeya dadantii 3937]
Length = 356
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 139/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAAAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N I + +
Sbjct: 120 EWMAPAGEQMARNYRSQMMYGGSMLSTQGGLWAKDGNDFVYIQR-----VAGENELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
DK++K++ + A A+ N KL +V E S + D
Sbjct: 175 IYHFDKQSKLLSIRYAASALYENGTWKLSQVEESDLRDSKQIGGSQTVSGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + +++ ++S R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLFDYINYLHQSGQ-EASRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV A +P L + +SI++LL
Sbjct: 294 GPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|251791279|ref|YP_003006000.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
gi|247539900|gb|ACT08521.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
Length = 356
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 138/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N I +
Sbjct: 120 EWVAPAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQR-----VAGESELLGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
DK+NK++ + A A+ N KL +V E S + D
Sbjct: 175 IYHFDKQNKLLSVRYAASAVYENGGWKLSQVEESDLSDGKQIGGSQTVSGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + S + +++ +S R + + + PL + M L+A S
Sbjct: 235 LGVVALEPDALSIRGLYDYINYLRQSGQ-EASRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV A +P L + +SI++LL
Sbjct: 294 GPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|54295468|ref|YP_127883.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
gi|53755300|emb|CAH16794.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
gi|307611506|emb|CBX01180.1| hypothetical protein LPW_28791 [Legionella pneumophila 130b]
Length = 356
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 120/358 (33%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLG-RADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + G + W++ N I + +
Sbjct: 123 VVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSI-----ASVTRENTLRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEIKYVNNSWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLRE-QQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
Length = 356
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 60/361 (16%), Positives = 122/361 (33%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + + + ++ + + DL + +G+ Y +++ V P
Sbjct: 1 MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLVFVLLSAPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P LV + L+R SEL+I R GISI + + ++ + T V
Sbjct: 60 HVYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EK L Q D+ Q W++ ++ +
Sbjct: 120 FVTPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRSFVNVEEVMPDSG-----LMNIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
D + DA + LK V + + + I+ +
Sbjct: 175 YEFDDSFHLRTISDAKTGRFDGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + +N R E + +V PL + M ++A
Sbjct: 235 VLLVVPEKMSAWNLYFYIHHL-SANKQKTSRHEIALWSKMVYPLASLVMVVLALPFGFLQ 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI G + + + G P+ +A++P +L + + +L
Sbjct: 294 QRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLFMA 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|148546263|ref|YP_001266365.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
gi|148510321|gb|ABQ77181.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
Length = 353
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 127/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + Y++ P
Sbjct: 1 MAK-LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSDT--YTVLEAGNFVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + I + + + T
Sbjct: 118 EYVAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHI-----NAVQPDGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + KI+ A A ND L V + + ++ + +
Sbjct: 173 RYRFDSERKIVTSSFARRAQYQNDHWLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + + +N R F+ ++ P++ A+ L+A S
Sbjct: 233 NTVILAPESLSITGLWDYIHYLSDQG-LNNSRYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|204927347|ref|ZP_03218549.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204324012|gb|EDZ09207.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 360
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 70/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + PV AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVVGALLPSASFFLISLWLMLRK 359
>gi|289623814|ref|ZP_06456768.1| hypothetical protein PsyrpaN_01505 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|298485820|ref|ZP_07003898.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298159644|gb|EFI00687.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330867847|gb|EGH02556.1| hypothetical protein PSYAE_11466 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330890524|gb|EGH23185.1| hypothetical protein PSYMO_17663 [Pseudomonas syringae pv. mori
str. 301020]
gi|330989712|gb|EGH87815.1| hypothetical protein PLA107_32131 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009019|gb|EGH89075.1| hypothetical protein PSYTB_04820 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 353
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A D +LK V + + +T ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWNYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|161505032|ref|YP_001572144.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866379|gb|ABX23002.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 360
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTDLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359
>gi|71737643|ref|YP_273426.1| hypothetical protein PSPPH_1159 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558196|gb|AAZ37407.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320322887|gb|EFW78978.1| hypothetical protein PsgB076_20532 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329804|gb|EFW85792.1| hypothetical protein PsgRace4_11126 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 353
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/360 (19%), Positives = 123/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A D +LK V + + +T ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWNYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|308189158|ref|YP_003933289.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
gi|308059668|gb|ADO11840.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
Length = 358
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 128/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ +YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQ-GSYSALSAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A SGE++ + Q G + W + N I + +F
Sbjct: 120 EFVAPSGEQMARNYRAQQLYGGALVSTQNGLWAKDGNNFIYIERIKGDNEIDGVSIYNFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + D A ++ + I ++ S + D
Sbjct: 180 DQRRLQSVRYAATATWDAAKKRWMLSQVDESNLTDPKLITGSQSLSGEWKTNLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + + I PL + M L+A S
Sbjct: 240 VALDPDALSIRGLHSYSKYLKQSGQ-EAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I L P+ A++P ++S+ +L+++
Sbjct: 299 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAISMFMLIKR 357
>gi|319896845|ref|YP_004135040.1| inner membrane protein [Haemophilus influenzae F3031]
gi|317432349|emb|CBY80704.1| conserved inner membrane protein [Haemophilus influenzae F3031]
Length = 358
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 126/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L LL + L +I E +G+ Y I + +P
Sbjct: 1 MMNTLDRYIGKSILGAIFATLLTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVAFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + + L + T+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGIAVMKTASPLVLLTMMIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|289649165|ref|ZP_06480508.1| hypothetical protein Psyrpa2_15669 [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 353
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A D +LK V + + +T ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWNYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|261819787|ref|YP_003257893.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
gi|261603800|gb|ACX86286.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
Length = 358
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 127/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIITTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIETFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N I F
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGNDFIYIERIVGDKELSGVNIYHFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + D + ++ + +I + S + D
Sbjct: 180 EQNKLLSVRYAASAEFDKDRNVWNLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + S + + +S R + + I P+ + M L+A S
Sbjct: 240 VALEPNALSIRGLHDYAKYLKQSGQESG-RYQLNMWSKIFAPVSVAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF Y + I + + P+ A++P + + +S+ +LL++
Sbjct: 299 RSVSAGSRIVIGISFGFFFYLLNEIFRPLSLVYGIPPILGAVLPSSVFLFISVALLLKR 357
>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
Length = 356
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 123/361 (34%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + + + ++ + + DL + +G+ Y +++ + P
Sbjct: 1 MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLMFVLLSAPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P LV + L+R SEL+I R GISI + + ++ + T V
Sbjct: 60 HVYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EK L Q D+ Q W++ ++ + +
Sbjct: 120 FVTPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRSFVNVEEVM-----PDSELMNIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
D + DA + LK V + + + I+ +
Sbjct: 175 YEFDDTFHLRTISDAKTGRFDGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + +N R E + +V PL + M ++A
Sbjct: 235 VLLVVPEKMSAWNLYFYIHHL-SANKQKTSRHEIALWSKMVYPLASLVMVVLALPFGFLQ 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI G + + + G P+ +A++P +L + + +L
Sbjct: 294 QRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLFMA 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|237729200|ref|ZP_04559681.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908929|gb|EEH94847.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 360
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDAMGAGLYTLLSAPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + I F
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGDSFVYIERVKGDAELGGISIYSFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 KRRLQSVRYAASATFDPEQKVWRLSQVDESNLTDPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + + PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359
>gi|16767725|ref|NP_463340.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|56416251|ref|YP_153326.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161617774|ref|YP_001591739.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551264|ref|ZP_02345019.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167991269|ref|ZP_02572368.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168232820|ref|ZP_02657878.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168234610|ref|ZP_02659668.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244031|ref|ZP_02668963.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262477|ref|ZP_02684450.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168464638|ref|ZP_02698541.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821095|ref|ZP_02833095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446562|ref|YP_002043719.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449673|ref|YP_002048503.1| hypothetical protein SeHA_C4884 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470492|ref|ZP_03076476.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738007|ref|YP_002117400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249048|ref|YP_002149399.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262055|ref|ZP_03162129.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197365174|ref|YP_002144811.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198242808|ref|YP_002218343.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200388381|ref|ZP_03214993.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205355211|ref|YP_002229012.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859605|ref|YP_002246256.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|238910635|ref|ZP_04654472.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16423045|gb|AAL23299.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56130508|gb|AAV80014.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161367138|gb|ABX70906.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405225|gb|ACF65447.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407977|gb|ACF68196.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194456856|gb|EDX45695.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713509|gb|ACF92730.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195632823|gb|EDX51277.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197096651|emb|CAR62266.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212751|gb|ACH50148.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197240310|gb|EDY22930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197292043|gb|EDY31393.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197937324|gb|ACH74657.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605479|gb|EDZ04024.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205274992|emb|CAR40066.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323911|gb|EDZ11750.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205330351|gb|EDZ17115.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333019|gb|EDZ19783.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337021|gb|EDZ23785.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342262|gb|EDZ29026.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348818|gb|EDZ35449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206711408|emb|CAR35787.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261249568|emb|CBG27435.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996824|gb|ACY91709.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160964|emb|CBW20498.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915576|dbj|BAJ39550.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|322615643|gb|EFY12563.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618703|gb|EFY15592.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322621884|gb|EFY18734.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627609|gb|EFY24400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322630915|gb|EFY27679.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637866|gb|EFY34567.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642324|gb|EFY38930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322643901|gb|EFY40449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651023|gb|EFY47408.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656724|gb|EFY53012.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659852|gb|EFY56095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661937|gb|EFY58153.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666315|gb|EFY62493.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672734|gb|EFY68845.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676164|gb|EFY72235.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680648|gb|EFY76686.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684458|gb|EFY80462.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323132817|gb|ADX20247.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323194205|gb|EFZ79402.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197350|gb|EFZ82490.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201532|gb|EFZ86596.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206046|gb|EFZ91008.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213057|gb|EFZ97859.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215428|gb|EGA00172.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219412|gb|EGA03897.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227716|gb|EGA11870.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228886|gb|EGA13015.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236502|gb|EGA20578.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239997|gb|EGA24044.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241956|gb|EGA25985.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247895|gb|EGA31832.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251467|gb|EGA35338.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323258167|gb|EGA41844.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323263687|gb|EGA47208.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265717|gb|EGA49213.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323270161|gb|EGA53609.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326626151|gb|EGE32496.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326630369|gb|EGE36712.1| putative permease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332991289|gb|AEF10272.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 360
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359
>gi|126175308|ref|YP_001051457.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|153001630|ref|YP_001367311.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|217972441|ref|YP_002357192.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
gi|125998513|gb|ABN62588.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|151366248|gb|ABS09248.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|217497576|gb|ACK45769.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
Length = 352
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 125/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGTYSMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VENINKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
+ + K+ + AD A+ D+ +L V + D
Sbjct: 175 YKFNSELKLTNVVHADRAVFSQDRWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + ++ R E + ++ P+ + M L+A S
Sbjct: 235 VVSIKPEALSIRGLVGYLDYLKTNSQ-DPSRYELALWRKVMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|16763280|ref|NP_458897.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144759|ref|NP_808101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213162831|ref|ZP_03348541.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213427634|ref|ZP_03360384.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213618568|ref|ZP_03372394.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650367|ref|ZP_03380420.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289824527|ref|ZP_06544086.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25513067|pir||AG1061 probable inner membrane protein STY4818 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505588|emb|CAD06940.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29140398|gb|AAO71961.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 360
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359
>gi|290968957|ref|ZP_06560492.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
gi|290780913|gb|EFD93506.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
Length = 362
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 58/362 (16%), Positives = 134/362 (37%), Gaps = 7/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K ++ L+ + + M S + A + +P
Sbjct: 1 MRILDKYILKEFIGPFLFGVCAFTAVFVGTGTLYRIASMINEYGASAAAAAKVLVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ F L+ SE+++ RA G +L P +V + + + T
Sbjct: 61 IVVLTFPMSVLLGALMAFGRLSAASEIIVMRAGGQHFVRLAMPVLVAAFFISLGTTAFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + S ++ + Q + + +
Sbjct: 121 FVVPRANNAYNRIINEEIRHHALPVSQEHVIIKNVHGQNIYGLLYARQYDGTEKEFRDIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV-----KLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ ++++++ + AD A K + V + + L + +
Sbjct: 181 VQEFEQDRLVRVEKADRAKWNGKKWIVHQGSIYDVSSNDNTSRTMTFENQELPFMQRPEK 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ ++ + E+ +++ + + + + Y +PL + LI A + L
Sbjct: 241 VQEAQKKPEELTIRELRQQIRVLTAHGV-DVNKLKVEMYNRFALPLASLVCALIGAPLGL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R I + + F+ Y+I+T+ + G G + P AAA +P I+ S+ I +++
Sbjct: 300 QKQR-GSSSIGFGISVVTIFIYYSIMTLADALGNGGTIAPAAAAFLPDIICGSVGIFLMI 358
Query: 357 QK 358
+K
Sbjct: 359 RK 360
>gi|56751017|ref|YP_171718.1| hypothetical protein syc1008_d [Synechococcus elongatus PCC 6301]
gi|81299323|ref|YP_399531.1| hypothetical protein Synpcc7942_0512 [Synechococcus elongatus PCC
7942]
gi|56685976|dbj|BAD79198.1| hypothetical protein YCF84 [Synechococcus elongatus PCC 6301]
gi|81168204|gb|ABB56544.1| conserved hypothetical protein YCF84 [Synechococcus elongatus PCC
7942]
Length = 394
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 114/361 (31%), Gaps = 9/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L L+ + + I + + +S A + ++P +
Sbjct: 29 IMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVRQVTEAGLPLSVAAQVFLLKMPDFL 88
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ R+ GIS ++ + P ++ SI++ T +
Sbjct: 89 VLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFYESV 148
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ--------QDIFIGAKKILPENHI 175
+ +Q + Q + + + + + I
Sbjct: 149 VPAANFQAQVTLQTALNQTRPQLEEKNNIVYQQFDRKTSELARIFYARRYDGEQMRGLTI 208
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + V S IP
Sbjct: 209 LDFTRGELSQIISAETGVWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKSQEFTIPETPL 268
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNK-SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S + +I + + + +N + E + + +P + VA LI AS+
Sbjct: 269 SIASQSRDETQMNATQIWQYLRVLRQTNNTADIRKWEVRLQQKLALPFVCVAFGLIGASL 328
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + F Y + + + G +G L + A P +L + + + +
Sbjct: 329 GTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPTLLAGWFPWLLGMGVGLYL 388
Query: 355 L 355
L
Sbjct: 389 L 389
>gi|312170935|emb|CBX79194.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
ATCC BAA-2158]
Length = 358
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 125/359 (34%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDF 179
+A GE++ + Q G + W + + I L I+
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERVRDDNQLSGISIYHFD 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K ++ + + S + D
Sbjct: 180 PQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S + + +S R + + I PL + M L+A S
Sbjct: 240 VSLDPGALSISGLYSYSKYLKQSGQ-MAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P +LS+ +L+++
Sbjct: 299 RSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKR 357
>gi|319405492|emb|CBI79111.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
Length = 363
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 122/360 (33%), Positives = 195/360 (54%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF YLKTT FLLG ILV +ID E +++ LP Y+ +++ R PLII
Sbjct: 5 TLGRYFFMLYLKTTCCFLLGVFILVLLIDFTENFSKLALLPYYTAKGAFLISLLRTPLII 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LN+ ELVI+R+IGIS WQ L P G+ L G+F++L INP+
Sbjct: 65 QQLFPFIALFSAITMLISLNKRLELVIARSIGISAWQFLTPACFGAFLFGLFSILFINPL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDI--IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ W+ N ++ IPW+ IGAK I+ ++ D T
Sbjct: 125 AAWSSSQSEKIVAAWRSNNNQISISNTRIPWLTQHTNLGRTTIGAKSIIHKDLSLIDATF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + + + A++ + L Y+ G+ P + + +K + ++
Sbjct: 185 VQYNENATVKNWINTKKAMLTDGAWLLINGTIYKIGQPPKKFSELRIKTHLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + FYE+ KK++ + + + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 245 AEPVTIPFYELPKKIAVARSFG-YSANKFDMHLQSLIALPMLLVAMTLIAATVSLKIPRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q + ++ GI +GF+LY I +++SFG +G + P+ AA +PVI+ + I LL EDG
Sbjct: 304 GQSKTLILGGIIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFGISFLLYTEDG 363
>gi|114048398|ref|YP_738948.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
gi|113889840|gb|ABI43891.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
Length = 352
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 124/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G +Y++ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGSYTMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VADIDKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ + K+ + A A+ ND L V + + D
Sbjct: 175 YKFNSELKLTNVVHAKSALFSNDSWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIRGLMGYLDYLK-NNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|26987719|ref|NP_743144.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
gi|24982407|gb|AAN66608.1|AE016288_7 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|313497349|gb|ADR58715.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
Length = 353
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 127/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + Y++ P
Sbjct: 1 MAK-LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSDT--YTVMEAGNFVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + I + + + T
Sbjct: 118 EYVAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHI-----NAVQPDGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + KI+ A A ND L V + + ++ + +
Sbjct: 173 RYRFDSERKIVTSSFARRAQYQNDHWLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + + +N R F+ ++ P++ A+ L+A S
Sbjct: 233 NTVILAPESLSITGLWDYIHYLSDQG-LNNSRYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
Length = 772
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/368 (17%), Positives = 127/368 (34%), Gaps = 14/368 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + +L+ + L+ ++L+ E+ + + S+ P
Sbjct: 406 PLLLDEYVIREFLRVFVMVLVSFVMLMLFFTFFELVGDII-RNHSSLLVVGEYLIDLTPS 464
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I P L+ +VVF +NR+SE+ +A GIS+++++ P +V + L+ +
Sbjct: 465 MIYLITPLAVLIAVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAVGLFFFNE 524
Query: 122 PIATSGEKIGIDLIQQWK----DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ L + K + + IF N
Sbjct: 525 YYVPQANRKQQALRNEIKGLPAQTTSHPGEQWMFGKREPGHPGMIFYYQYFDPDTNTFLN 584
Query: 178 DFTSITIDKKNKIIHRKDADL--AIIYNDKVKLKKVVEYQYGRIPIDKN-----STTLNI 230
+ ++ R A + + + L+ + I +T +
Sbjct: 585 LTVFEFDPQSFTLMKRTFAQMASWDQKDHRWILQDGWTRTFENHEIQSYQPFAVTTLPEM 644
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
F+K Q SF ++ ++ ++S F R Q + PL+ + M ++
Sbjct: 645 IETPHYFEKDFRQSTEMSFAQLRHYIADLSQSG-FDTVRLRVQLDRKLADPLITLVMAVL 703
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +L + V+ I + I ++ G +L AA P IL
Sbjct: 704 AVPFALSMGKRGSLA-GVSVAIGVAIAYWLISGTFEAMGDVSMLPAFLAAWSPDILFALA 762
Query: 351 SILILLQK 358
+LL+
Sbjct: 763 GTYLLLRT 770
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/366 (13%), Positives = 113/366 (30%), Gaps = 8/366 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L L ++F+ +L ++ + + S+ +P
Sbjct: 1 MRILTRYILREILSHGLIGGALFTFVLFMPNLGDLLE-LAVRNSSSMGAVGEAFLLMLPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +IP LV ++ L SE+ RA GI +W+ + V + ++
Sbjct: 60 IFVVVIPMSVLVGILLGLSRLAADSEVTAMRASGIGVWRFVGIVSVIACAAWGLGLVNSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + I L Q + + + + K + F +
Sbjct: 120 YLAPWSSRQTIHLEQSLANAQASYEVQPRVFYEDFKNYVLYVEDVKAGRGAARWGKVFIA 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I ++ I ++ L ++ + ++ + +
Sbjct: 180 NLTNPDAPSITTAESATVINGPNQTILMRLHDGAQHQLSPTEPGDYNLSTFTETDVPLRT 239
Query: 242 EQFASRSFYEIIKKM------SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F+ K++ +S+ + + P + + L+ +
Sbjct: 240 GSQEDVRFHRTDKRILAMTNRELIERSHGKGGTWFFIELQKRLAYPTACLVLMLVGVPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR I F+ Y + + + + G + P+ + +L I +L
Sbjct: 300 MS-SRRGGKSGGFVITIALVFIYYFLSSTGTALARQGKIPPLIGVWMANVLFAGCGIFLL 358
Query: 356 LQKEDG 361
Q G
Sbjct: 359 RQMSTG 364
>gi|160876366|ref|YP_001555682.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|160861888|gb|ABX50422.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|315268556|gb|ADT95409.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
Length = 352
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 125/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGTYSMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VENINKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
+ + K+ + AD A+ D+ +L V + D
Sbjct: 175 YKFNSELKLTNVVHADRAVFSQDRWRLFDVKSTDLSYEKVVLEYLEEDQWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + ++ R E + ++ P+ + M L+A S
Sbjct: 235 VVSIKPEALSIRGLVGYLDYLKTNSQ-DPSRYELALWRKVMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|297537469|ref|YP_003673238.1| permease [Methylotenera sp. 301]
gi|297256816|gb|ADI28661.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
Length = 356
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 136/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K + L +L + + DL + + +G+ +Y + + + P
Sbjct: 1 MKILNKYLLKEIVSNVLMVMLALIAMFSFFDLIQELDALGK-GSYGLGKILLFVLLSAPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P LV + L R SELV+ R G+SI+ + + + I T L+
Sbjct: 60 HVYDVMPVAVLVGCMYSLGQLARYSELVVLRVSGLSIFDIAVLLLKIGAIFTIITFLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EK + + D+ Q+ W++ N ++ + + +
Sbjct: 120 LVTPFSEKTAQRMRIKATDSVVAQEFRSGLWVKDGNSFINVEE-----VLPDATLLNIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK K+I ++A ++ KLK V + + + + + T + I+ +
Sbjct: 175 FDFDKNAKLISTRNAKAGEFKHESWKLKDVTDTSFDKDSVKVSQSLEATWHSLIRPELLN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + ++ + N R E + ++ PL + M ++A
Sbjct: 235 VLLIMPEKMSAWNLYTYINHLSI-NKQKTTRYEVALWAKMIYPLACMVMVVLALPFGFVQ 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + GI G M + + G P+ +A++P I+ + + +L
Sbjct: 294 QRAAGASTKIFVGIMLGVMYQILNRVFAHLGLLNDWPPLFSAIMPTIMFLMAGVAMLFYV 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|293393092|ref|ZP_06637407.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
gi|291424238|gb|EFE97452.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
Length = 356
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 133/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGMYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDVEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N I + +
Sbjct: 120 EWVAPQGEQMARNYRAQQMYGGSLLSTKNGLWAKDGNDFIYIER-----VAGENELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ + ++ + A A + +L +V + T + D
Sbjct: 175 IYHFNDRRRLETVRYAATATFEDGAWQLSQVDTSDLTNEKQVTGTQTLTGVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S + + + +S R + + I PL + M L+A S
Sbjct: 235 LGVVALDPDSLSISGLHNYVKYLKQSGQ-EASRYQLNMWSKIFSPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV AL+P +L + +S+ +LL
Sbjct: 294 GPLRSVPMGMRVVTGISFGFLFYVMDQIFGPLSLVYNMPPVLGALLPSLLFLLISVYLLL 353
Query: 357 QK 358
++
Sbjct: 354 KR 355
>gi|294139611|ref|YP_003555589.1| hypothetical protein SVI_0840 [Shewanella violacea DSS12]
gi|293326080|dbj|BAJ00811.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 352
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 132/359 (36%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + + LL L +I + +G +Y++ + +P
Sbjct: 1 MKILDLYIARTLVSASALCLLILTGLSGIIKWVDQLRVVG-RGSYTMLDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + +++
Sbjct: 60 DIEMFFPMAVLLGALIGMGTLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPAAERRANELQAFKVSGGSLIKSSRGIWAKDGDLFVNIGE-----VENINRLHNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
D ++ A+ + ND +L V + + + + + D
Sbjct: 175 YEFDSTLTLVKTIHAERGVYSNDHWRLIDVRQTDLTKDKVTLTDLTLYRWDSTLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S ++ + + +N + R E + I+ P+ + M L+A S
Sbjct: 235 VVSVKPESLSIQGLMGYLDYLKVNNQ-DSGRYELALWRKIMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A++P ++ +++I + +
Sbjct: 294 LRTVTMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAVMPALIFSTIAIYFIRK 352
>gi|17231561|ref|NP_488109.1| hypothetical protein alr4069 [Nostoc sp. PCC 7120]
gi|17133204|dbj|BAB75768.1| alr4069 [Nostoc sp. PCC 7120]
Length = 371
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/367 (14%), Positives = 118/367 (32%), Gaps = 16/367 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L T L+ + + ID + +S + ++P I
Sbjct: 2 DRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNFIVL 61
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S ++ T L IA
Sbjct: 62 AFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQIAP 121
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + Q+ +IL + F +
Sbjct: 122 AANYQATLTLDKALKSDKPTFKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFDGKRMK 181
Query: 186 KKNKIIHRKDADL---------AIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIP 231
I D Y + R + L +P
Sbjct: 182 GLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQLKLP 241
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLI 290
+ S + + + + +++ R E + +P + V L+
Sbjct: 242 RTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVFGLV 301
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A++ R+ + + F Y + I + G++GI P A +P + + +
Sbjct: 302 GAAMGTIPQRTGK-GTSFGISVIVIFSYYLLGFITGALGQAGIFSPFIGAWLPNFIGLGV 360
Query: 351 SILILLQ 357
I +L++
Sbjct: 361 GIFLLVR 367
>gi|75907859|ref|YP_322155.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
gi|75701584|gb|ABA21260.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
Length = 391
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/369 (14%), Positives = 121/369 (32%), Gaps = 16/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY L T L+ + + ID + +S + ++P I
Sbjct: 20 IMDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNFI 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S ++ T L I
Sbjct: 80 VLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQI 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + + + + + Q+ +IL + F
Sbjct: 140 APAANYQATLTLDKALKSDKPKLKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFDGKQ 199
Query: 184 IDKKNKIIHRKDADL---------AIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLN 229
+ I D Y + R + L
Sbjct: 200 MKGLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQLK 259
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + S + + + + +++ R E + +P + V
Sbjct: 260 LPRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVFG 319
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ A++ R+ + + F Y + I + G++G+ P A +P + +
Sbjct: 320 LVGAAMGTIPQRTGK-GTSFGISVIVIFSYYLLGFITGALGQAGVFSPFIGAWLPNFIGL 378
Query: 349 SLSILILLQ 357
+ I +L++
Sbjct: 379 GVGIFLLVR 387
>gi|296532232|ref|ZP_06894979.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
gi|296267439|gb|EFH13317.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
Length = 369
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 8/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + L + LV + D E+ + + + A +AA R+P ++
Sbjct: 6 TLSAYIARRFAGMALAMVAALAALVALFDFIELLRRAATRADAGFALVASIAALRLPYVV 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+PF L+ IV F+ L+R SELV++RA G+S W L V+ ++ +G + V++P+
Sbjct: 66 LQILPFAVLLGGIVAFWRLSRASELVVARAAGVSAWSFLLGPVLVALAMGTLAITVVSPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-------AKKILPENHIW 176
+ + L + N S + + + + G ++ + +
Sbjct: 126 SAAMMARAERLDATYLRNATGLSSLAGGKLWLRQADESVEPGGVAILAGVPEVGRDGFLL 185
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ ++ I R +A LA + L++ V + R P+ + L + D
Sbjct: 186 RGASLWRFSATDRPIGRAEAPLARLEPGAWVLQEAVSFGRDRQPLPAATLRLPTSLTPDR 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + SF+ + ++ + F R F+ L+ +PL+ AM L+AA S+
Sbjct: 246 IEETFASPDTLSFWALPGFIAVLESAG-FSAVRHRLTFHSLLSLPLLAAAMALLAAGFSM 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R ++ GI +GF L+ + + + FG++G L AA P + + ++ +LL
Sbjct: 305 RHARRGGVGRMLGLGIAAGFALFLLDKVAEEFGQAGTLPVALAAWAPSVAGLLFALTLLL 364
Query: 357 QKEDG 361
EDG
Sbjct: 365 YTEDG 369
>gi|218551559|ref|YP_002385351.1| hypothetical protein EFER_4344 [Escherichia fergusonii ATCC 35469]
gi|218359101|emb|CAQ91762.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia fergusonii ATCC 35469]
gi|324112113|gb|EGC06091.1| inner membrane protein yjgQ [Escherichia fergusonii B253]
gi|325499820|gb|EGC97679.1| hypothetical protein ECD227_3917 [Escherichia fergusonii ECD227]
Length = 360
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + I + F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQEGLWAKDGKNFVYIERVKGEKELGGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSIRYAASATFDPDNKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L+++
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRR 359
>gi|85060085|ref|YP_455787.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
gi|84780605|dbj|BAE75382.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
Length = 356
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 78/361 (21%), Positives = 137/361 (37%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I E ++G+ YS + +P
Sbjct: 1 MFGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVEQLRKVGQ-GGYSALGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ +L SELV+ +A G S Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMSALLGALLGLGSLATRSELVVMQASGFSRMQVAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N I + +
Sbjct: 120 EWVAPAGEQMAYNYRTQMIYGGSMLSTQNGLWAKDGNDFIFIER-----VVGSDELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
DK +++ + A A N KL +V E T + D
Sbjct: 175 IYHFDKADRLQSLRYAATATFSNGSWKLSQVDESDLTNDKQITGRQTLNGEWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S S + +++ +S N R + + I P + M L+A S
Sbjct: 235 LGVVALEPNSLSISGLYNYVNYLKQSGQESN-RYQLNMWSKIFSPFSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + V GI GF+ Y + I + PV AL+P + + +SI++LL
Sbjct: 294 GPLRSVPMGVRVVIGISFGFLFYVLDQIFGPLSLVYNMPPVFGALLPSMAFLIISIVMLL 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|188532529|ref|YP_001906326.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
gi|188027571|emb|CAO95418.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
Length = 358
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 126/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I F
Sbjct: 120 EFVAPQGEQMARNFRAQQLVGGSLLSTQSGLWAKDGDNFVFIERIRDDSQLSGISIYSFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + + + ++ + +I + S + D
Sbjct: 180 HDRRLQTVRYAASAKYNADKKLWELAQVDQSDLTDAQQIKGSQTLSGEWKTTLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + + I PL + M L+A S
Sbjct: 240 VALDPGALSISGLYSYSKYLQQSGQ-MAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + PV AL+P LS+ +L+++
Sbjct: 299 RSVSMGMRVITGISFGFLFYVLDQIFGPLSLVYNIPPVLGALLPSAAFFVLSVAMLIKR 357
>gi|292486866|ref|YP_003529736.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
CFBP1430]
gi|292900737|ref|YP_003540106.1| permease [Erwinia amylovora ATCC 49946]
gi|291200585|emb|CBJ47716.1| putative permease [Erwinia amylovora ATCC 49946]
gi|291552283|emb|CBA19320.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
CFBP1430]
Length = 358
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 126/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDF 179
+A GE++ + Q G + W + + I + L I+
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERMRDDNQLSGISIYHFD 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K ++ + + S + D
Sbjct: 180 PQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S + + +S R + + I PL + M L+A S
Sbjct: 240 VSLDPGALSISGLYSYSKYLKQSGQ-MAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P +LS+ +L+++
Sbjct: 299 RSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKR 357
>gi|195940456|ref|ZP_03085838.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|295097698|emb|CBK86788.1| Predicted permeases [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 360
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + I F +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQNFVYIERVKGDDELGGVSIYAFNN 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 DRRLQSVRYAASAKFDANNKLWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +LL++
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWMLLKR 359
>gi|310766280|gb|ADP11230.1| Inner membrane protein [Erwinia sp. Ejp617]
Length = 358
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 129/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I +F
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERIRDDNQLSGISIYNFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
K + + + ++ + +I + S N + D
Sbjct: 180 HERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + + I PL + M L+A S
Sbjct: 240 VALDPGALSISGLYSYSKYLKQSGQ-MAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P ++S+ +L+++
Sbjct: 299 RSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAISLAMLVKR 357
>gi|113971160|ref|YP_734953.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|113885844|gb|ABI39896.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
Length = 352
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 123/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G +YS+ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGSYSMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VADIDKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ + K+ + A A+ D L V + + D
Sbjct: 175 YKFNSELKLTNVVHAKSALFSKDSWHLMDVKRTDLSYEEVKLEHLDEDIWRSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIRGLMGYLDYLK-NNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|187731850|ref|YP_001882954.1| putative permease [Shigella boydii CDC 3083-94]
gi|187428842|gb|ACD08116.1| putative permease [Shigella boydii CDC 3083-94]
Length = 360
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|283834897|ref|ZP_06354638.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
gi|291069157|gb|EFE07266.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
Length = 360
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDAMGAGLYTLLSAPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + I F
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGDSFVYIERVKGDAELGGISIYSFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 KRRLQSVRYAASATFDPEQKIWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + + PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359
>gi|259907067|ref|YP_002647423.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
gi|224962689|emb|CAX54144.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
gi|283476867|emb|CAY72716.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia pyrifoliae
DSM 12163]
Length = 358
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 129/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + I +F
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERIRDGNQLSGISIYNFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
K + + + ++ + +I + S N + D
Sbjct: 180 HERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +S R + + I PL + M L+A S
Sbjct: 240 VALDPGALSISGLYSYSKYLKQSGQ-MAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P ++S+ +L+++
Sbjct: 299 RSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAISLAMLVKR 357
>gi|304410147|ref|ZP_07391766.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|307302142|ref|ZP_07581900.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
gi|304351556|gb|EFM15955.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|306914180|gb|EFN44601.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
Length = 352
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 124/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGTYSMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + T
Sbjct: 120 WGAPIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VENISKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
+ + K+ + AD A+ D+ +L V + D
Sbjct: 175 YKFNSELKLTNVVHADRAVFSQDRWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + ++ R E + ++ P+ + M L+A S
Sbjct: 235 VVSIKPEALSIRGLVGYLDYLKTNSQ-DPSRYELALWRKVMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|224586303|ref|YP_002640102.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470831|gb|ACN48661.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 360
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYVFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDSDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359
>gi|163750107|ref|ZP_02157350.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
gi|161330164|gb|EDQ01146.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
Length = 352
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 134/359 (37%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + ++ LL L +I + +G NY++ + +P
Sbjct: 1 MKILDLYIARTLVSSSALCLLILTGLSGIIKWVDQLRVVG-RGNYTMLDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + +++
Sbjct: 60 DIEIFFPMAVLLGALIGMGMLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPAAERRANELQAFKVSGGSLIKSSRGIWAKDGDLFVNIGE-----VENINSLRNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
D ++ A+ + ND +L V + + + + + D
Sbjct: 175 YEFDSTLTLVKTIHAERGVYSNDHWRLLDVRQIDLTKDKVTLTDLTLYRWDSTLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S ++ + + +N ++ R E + I+ P+ + M L+A S
Sbjct: 235 VVSVKPESLSIQGLLGYLDYLE-ANNQNSGRYELALWRKIMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF Y I L A++P ++ S++I + +
Sbjct: 294 LRSVTMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAVMPALIFSSVAIYFIRK 352
>gi|62182906|ref|YP_219323.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62130539|gb|AAX68242.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322717409|gb|EFZ08980.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 360
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAISLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYVFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359
>gi|194337384|ref|YP_002019178.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309861|gb|ACF44561.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 359
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y + K L+ + L +I++ E ++ + + + +P
Sbjct: 1 MKILNKYILGQFAKAFLFTSIAFACLFILINMVEKLDEFIDKK-LGLWQIVHYYLLSIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P L+ +I+V L+ + EL R+ G+S+ QLL PF+ G +L+ +F +L
Sbjct: 60 ILLVVSPVSALLSSILVAGKLSFSGELPAIRSAGVSMRQLLTPFITGGVLILLFNLLNAG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I+ S Q++ Q + + + + IG + I
Sbjct: 120 WISPSTFAEKNHFEQRYLKRNPAQPQENRNIHILEPGNRMLSIGTLD-PDQAEISAVSIE 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
+ K D+ + L + + + T++ + +
Sbjct: 179 EFSGARLKSRTDADSMRYNQKTGEWILLNAAKRSFTGKDETFHLTPVTSVKLALSPRSLS 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + Q + + ++ + R+ +F+ I +P + + LI +S +
Sbjct: 239 ELNLQPDEMNLIRHYRYLTEKEGAGFAGLERSTVKFHNKIALPFASLIIILIGVPLSAKK 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R ++ +F+GF+ + + G G++ P+ AA +P IL + + I
Sbjct: 299 KR-GGLASEISITLFAGFLFMGVQKTIAIAGYQGMINPMLAAWLPNILFLGIGYAI 353
>gi|289523522|ref|ZP_06440376.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503214|gb|EFD24378.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 369
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 7/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L ++ + T ++ ++ +L+ DL + S L R+P
Sbjct: 8 FRLLDKFIITEFYPTFVFGVMVFTVLLVAGDLLFDIADLLIQSRVPFSIVIRLFVYRLPG 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P L+ I+ F L SEL RA GIS +++L P + SIL+G F +L+
Sbjct: 68 VIVLTLPMAALLATILSFGKLATQSELTALRASGISFYRILRPVFLASILIGGFALLLNE 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ ++++ +++ + L D
Sbjct: 128 TLVPLADRAADNIMRYEVARQKPSLLKEQMFLKEERDGALSRVIYIGKLFPQEGNMDDVL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDG 236
I + +I A + L + + L++P+
Sbjct: 188 IQEFESGEITRILTAKNGDWKEGQWWLYNGQVFNVTKEGFVEPLFSFEKQQLSLPLSPSQ 247
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S+ S +E+ + N + + +P V + L+ ASV
Sbjct: 248 VVTSSQDPKKMSAFELYNYIKLMNVQGS-DVNSLWVLLHLRLAVPWASVVLALVGASVGA 306
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + + I F Y ++ +S G+ G + P+ AA +P ++ + +
Sbjct: 307 GTRRSGS-GMGIGVSILLVFAYYVFMSFCRSLGQGGYIPPLLAAWMPNLIFLVCGAFM 363
>gi|88859093|ref|ZP_01133734.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
gi|88819319|gb|EAR29133.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
Length = 354
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/360 (18%), Positives = 134/360 (37%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L+TT + LL + + +I E +G +Y + + +P
Sbjct: 1 MKILDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKYVG-RGSYDVMTAGLYTLFSIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL+ + L SELV+ +A G+S ++++ + ++++ + + +
Sbjct: 60 DVVTFFPMATLIGGLTGLGALASNSELVVMQAAGLSRFEIIRSVMKTALVMALCVMAMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+K +L G + W + + +I + +N
Sbjct: 120 WGVPEAQKQAKELRTYAISGGSIFNARQGVWAKDGDVFLNIDN-----VDDNGQLNGLKM 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+K ++ +A AI + D LK V + + +T + D
Sbjct: 175 YQFNKSLDLVAITNAQSAISHRDGWLLKGVKTIYLDEQEVRQENTKEQLYVSELTPDKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S SF +I + + N E + ++ P+ + M L+A S
Sbjct: 235 IVSLKAESLSFTGLIGYLDYLK-KNEQDTSSYELALWRKLMQPVSIAVMLLVALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +G + + I L PV A+ P +L I +SI ++ ++
Sbjct: 294 LRSVSMGARIVMGVITGIVFHLSDKIFGPIVLVYELSPVVGAVFPSLLFIGISIYLIKKR 353
>gi|209964086|ref|YP_002297001.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209957552|gb|ACI98188.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 359
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/362 (17%), Positives = 143/362 (39%), Gaps = 7/362 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RY + +L +L L+ L+ ++DL + +++ E + A R+P
Sbjct: 1 MTGTLARYLSRQFLVRSLAVLVALTALLQLLDLLDAASRVLERGGA-LGDLGTYALLRLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+++++P LV ++ + L + +E+V R+ G++ +QLL + ++ + +F +++
Sbjct: 60 SIVERLVPLAVLVGSLTTLYGLVQNNEIVAMRSAGLTPYQLLATLMPAAVAIAVFHLILS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA E+ + + + D + + + +++L E +
Sbjct: 120 DQIAPRAERAFLTWWAETEPPTDDDLPLAEKKLWLRVGNTIVAA--ERVLERGARLEQVS 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ R A A+ + L R + +
Sbjct: 178 LYPRDDQGRVTERTRAAAAVYGDGNWTLLDGTRLDLTRGDFKAEPFARAPWPVRLHPANV 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + + + + ET+ + PL + M L+AA V+
Sbjct: 238 VEVLQPTENIPLLRL-RSILRGDWAGRQSPAYYETRLHETYAGPLATLIMVLLAAPVAHG 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS +A GI G ++ + G++G + V AA P + ++ IL+
Sbjct: 297 MRRSGAVGGSMALGIGIGLTYLLADGMLAALGEAGAMPAVIAAWAPTVFFAAVGGAILVH 356
Query: 358 KE 359
E
Sbjct: 357 VE 358
>gi|117921443|ref|YP_870635.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
gi|117613775|gb|ABK49229.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
Length = 352
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/359 (17%), Positives = 123/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G +Y++ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGSYTMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VADIDKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ + K+ + A A+ D L V + + D
Sbjct: 175 YKFNSELKLTNVVHAKSALFSKDSWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIRGLMGYLDYLK-NNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|91774576|ref|YP_544332.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
gi|91708563|gb|ABE48491.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
Length = 356
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + + + +L + + DL + +G+ NY IS+ + P
Sbjct: 1 MKLLNRYLAQEIVSSIMLIMLALLAMFSFFDLIQELESLGK-GNYGISKVLLYVLLSAPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P LV + +R SEL+I R GISI ++ + ++ + T LV
Sbjct: 60 HVYEVVPVAVLVGTMYALGQFSRYSELIILRVSGISIRKIAFSLLRVGLVFAVITFLVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA EK + Q D+ Q W++ N ++ D
Sbjct: 120 LIAPMSEKAAQRIRIQATDSVVAQDFRSGLWVKDGNSFVNVQNVMPDAS-----LMDIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
D + ++ +A + L +V + + I N T I+ +
Sbjct: 175 YEFDNEFRLRTISNAKEGSFDGNSWNLHQVTQTHFEEQKIRTNVFQEATWQSLIRPELLN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + ++ SN R + + ++ PL + M ++A
Sbjct: 235 VLLVVPEKMSAWNLYFYINHL-ASNKQKTSRHQIALWSKMIYPLACLVMVILALPFGFLQ 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS+ + GI G + + + G P+ +A++P +L ++ I +L
Sbjct: 294 QRSSSASTKIFSGIMLGIVYQVLNRVFVHLGLLNDWSPLFSAVMPTLLFMAAGIFMLYWV 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|309784105|ref|ZP_07678747.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|308928098|gb|EFP73563.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 360
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A GE++ + Q G + W + N I F
Sbjct: 123 WAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|193069794|ref|ZP_03050744.1| putative permease [Escherichia coli E110019]
gi|192956848|gb|EDV87301.1| putative permease [Escherichia coli E110019]
Length = 360
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSAAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|157374155|ref|YP_001472755.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
gi|157316529|gb|ABV35627.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
Length = 352
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 129/359 (35%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + ++ LL L +I + +G +Y++ + +P
Sbjct: 1 MRILDLYIARTIVSSSALCLLILTGLSGIIKWVDQLRLVG-RGSYTMLDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ L SELV+ ++ G+S WQ+ + +I L + + +
Sbjct: 60 DLEMFFPLGVLLGALIGMGMLASNSELVVMQSSGLSRWQITLSAMKTAIPLMLLIMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + + T
Sbjct: 120 WGAPVAEQKANELQATKLSGGSLIKSSRGIWAKDGDLFVNIGE-----VEDINHLGNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
D+ ++ A+ + ND +L V + + + D
Sbjct: 175 YEFDETLSLVRTIHAEHGVYSNDHWRLMDVRQTDLTEDKVTLTDLTLYRWESTLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S ++ + + +N + R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPESLSIQGLMGYLDYLKVNNQ-DSARYELALWRKLLQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I + A +P ++ + ++ + +
Sbjct: 294 LRTVTMGARVLLGVIAGFSFYISSEIFGPLTLVYGVPAFIGAGMPAVIFSAGAVYFIRK 352
>gi|323965651|gb|EGB61105.1| inner membrane protein yjgQ [Escherichia coli M863]
gi|327250208|gb|EGE61927.1| hypothetical protein ECSTEC7V_5012 [Escherichia coli STEC_7v]
Length = 360
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLESVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|38704251|ref|NP_313266.2| hypothetical protein ECs5239 [Escherichia coli O157:H7 str. Sakai]
gi|89110978|ref|AP_004758.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. W3110]
gi|90111715|ref|NP_418683.4| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|110644621|ref|YP_672351.1| putative membrane protein YjgQ [Escherichia coli 536]
gi|157155171|ref|YP_001465771.1| putative permease [Escherichia coli E24377A]
gi|157163737|ref|YP_001461055.1| putative permease [Escherichia coli HS]
gi|168749566|ref|ZP_02774588.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|168754844|ref|ZP_02779851.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|168760517|ref|ZP_02785524.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|168766553|ref|ZP_02791560.1| putative permease [Escherichia coli O157:H7 str. EC4486]
gi|168774016|ref|ZP_02799023.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|168782789|ref|ZP_02807796.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|168784912|ref|ZP_02809919.1| putative permease [Escherichia coli O157:H7 str. EC869]
gi|168797842|ref|ZP_02822849.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|170021730|ref|YP_001726684.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|170083701|ref|YP_001733021.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
gi|170681768|ref|YP_001746666.1| putative permease [Escherichia coli SMS-3-5]
gi|188493811|ref|ZP_03001081.1| putative permease [Escherichia coli 53638]
gi|191168708|ref|ZP_03030487.1| putative permease [Escherichia coli B7A]
gi|193063693|ref|ZP_03044781.1| putative permease [Escherichia coli E22]
gi|194426570|ref|ZP_03059124.1| putative permease [Escherichia coli B171]
gi|194437817|ref|ZP_03069912.1| putative permease [Escherichia coli 101-1]
gi|195937288|ref|ZP_03082670.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|208808552|ref|ZP_03250889.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208812170|ref|ZP_03253499.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208821551|ref|ZP_03261871.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209396919|ref|YP_002273807.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|217326107|ref|ZP_03442191.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218556809|ref|YP_002389723.1| hypothetical protein ECIAI1_4493 [Escherichia coli IAI1]
gi|218561420|ref|YP_002394333.1| hypothetical protein ECS88_4849 [Escherichia coli S88]
gi|218692649|ref|YP_002400861.1| hypothetical protein ECED1_5115 [Escherichia coli ED1a]
gi|218698010|ref|YP_002405677.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218702965|ref|YP_002410594.1| hypothetical protein ECIAI39_4735 [Escherichia coli IAI39]
gi|218707868|ref|YP_002415387.1| hypothetical protein ECUMN_4794 [Escherichia coli UMN026]
gi|227886684|ref|ZP_04004489.1| inner membrane protein [Escherichia coli 83972]
gi|238903363|ref|YP_002929159.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|253775115|ref|YP_003037946.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164187|ref|YP_003047297.1| inner membrane protein [Escherichia coli B str. REL606]
gi|254796282|ref|YP_003081119.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
gi|256019914|ref|ZP_05433779.1| conserved inner membrane protein [Shigella sp. D9]
gi|256025198|ref|ZP_05439063.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
gi|260847093|ref|YP_003224871.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|260858414|ref|YP_003232305.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|260871014|ref|YP_003237416.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|261225381|ref|ZP_05939662.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255366|ref|ZP_05947899.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
gi|293402887|ref|ZP_06646984.1| membrane protein [Escherichia coli FVEC1412]
gi|293407982|ref|ZP_06651822.1| conserved hypothetical protein [Escherichia coli B354]
gi|293417762|ref|ZP_06660384.1| lipopolysaccharide export system permease lptG [Escherichia coli
B185]
gi|293476565|ref|ZP_06664973.1| lipopolysaccharide export system permease lptG [Escherichia coli
B088]
gi|298378413|ref|ZP_06988297.1| lipopolysaccharide export system permease lptG [Escherichia coli
FVEC1302]
gi|300818513|ref|ZP_07098722.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300821369|ref|ZP_07101517.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300899412|ref|ZP_07117667.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300906110|ref|ZP_07123829.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300916358|ref|ZP_07133100.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300923940|ref|ZP_07139950.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300928088|ref|ZP_07143636.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|300950208|ref|ZP_07164149.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300957115|ref|ZP_07169356.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300972387|ref|ZP_07171920.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300988160|ref|ZP_07178580.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|301024382|ref|ZP_07188070.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|301050052|ref|ZP_07196964.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|301304685|ref|ZP_07210793.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301325193|ref|ZP_07218717.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|301643390|ref|ZP_07243440.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|306815520|ref|ZP_07449669.1| Inner membrane protein yjgQ [Escherichia coli NC101]
gi|307140957|ref|ZP_07500313.1| Inner membrane protein yjgQ [Escherichia coli H736]
gi|307312963|ref|ZP_07592591.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|309792903|ref|ZP_07687331.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|312965943|ref|ZP_07780169.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312973920|ref|ZP_07788091.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331645011|ref|ZP_08346128.1| inner membrane protein YjgQ [Escherichia coli H736]
gi|331650395|ref|ZP_08351467.1| inner membrane protein YjgQ [Escherichia coli M605]
gi|331656096|ref|ZP_08357084.1| inner membrane protein YjgQ [Escherichia coli M718]
gi|331660843|ref|ZP_08361775.1| inner membrane protein YjgQ [Escherichia coli TA206]
gi|331665931|ref|ZP_08366825.1| inner membrane protein YjgQ [Escherichia coli TA143]
gi|331671170|ref|ZP_08372003.1| inner membrane protein YjgQ [Escherichia coli TA271]
gi|331671403|ref|ZP_08372201.1| inner membrane protein YjgQ [Escherichia coli TA280]
gi|331680400|ref|ZP_08381059.1| inner membrane protein YjgQ [Escherichia coli H591]
gi|331681282|ref|ZP_08381919.1| inner membrane protein YjgQ [Escherichia coli H299]
gi|83288182|sp|P0ADC7|LPTG_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|83288183|sp|P0ADC6|LPTG_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|31323181|gb|AAP43525.1| YjgQ [Escherichia coli B]
gi|85677009|dbj|BAE78259.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
W3110]
gi|87082400|gb|AAC77219.2| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|110346213|gb|ABG72450.1| putative membrane protein YjgQ [Escherichia coli 536]
gi|157069417|gb|ABV08672.1| putative permease [Escherichia coli HS]
gi|157077201|gb|ABV16909.1| putative permease [Escherichia coli E24377A]
gi|169756658|gb|ACA79357.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|169891536|gb|ACB05243.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519486|gb|ACB17664.1| putative permease [Escherichia coli SMS-3-5]
gi|187770216|gb|EDU34060.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|188016197|gb|EDU54319.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|188489010|gb|EDU64113.1| putative permease [Escherichia coli 53638]
gi|188999755|gb|EDU68741.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|189357825|gb|EDU76244.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|189364202|gb|EDU82621.1| putative permease [Escherichia coli O157:H7 str. EC4486]
gi|189368974|gb|EDU87390.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|189375169|gb|EDU93585.1| putative permease [Escherichia coli O157:H7 str. EC869]
gi|189379540|gb|EDU97956.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|190901256|gb|EDV61026.1| putative permease [Escherichia coli B7A]
gi|192930680|gb|EDV83286.1| putative permease [Escherichia coli E22]
gi|194415309|gb|EDX31577.1| putative permease [Escherichia coli B171]
gi|194423313|gb|EDX39305.1| putative permease [Escherichia coli 101-1]
gi|208728353|gb|EDZ77954.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208733447|gb|EDZ82134.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208741674|gb|EDZ89356.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209158319|gb|ACI35752.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|217322328|gb|EEC30752.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218354742|emb|CAV01806.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218363578|emb|CAR01235.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI1]
gi|218368189|emb|CAR05997.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli S88]
gi|218372951|emb|CAR20832.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI39]
gi|218430213|emb|CAR11214.2| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli ED1a]
gi|218434965|emb|CAR15906.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli UMN026]
gi|222036034|emb|CAP78779.1| Inner membrane protein yjgQ [Escherichia coli LF82]
gi|227836257|gb|EEJ46723.1| inner membrane protein [Escherichia coli 83972]
gi|238860250|gb|ACR62248.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|242379782|emb|CAQ34609.1| LptG, subunit of LptABCFG ABC transporter [Escherichia coli
BL21(DE3)]
gi|253326159|gb|ACT30761.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976090|gb|ACT41761.1| conserved inner membrane protein [Escherichia coli B str. REL606]
gi|253980246|gb|ACT45916.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
gi|254595682|gb|ACT75043.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
TW14359]
gi|257757063|dbj|BAI28565.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|257762240|dbj|BAI33737.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|257767370|dbj|BAI38865.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|260450918|gb|ACX41340.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
gi|281181360|dbj|BAI57690.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284924432|emb|CBG37557.1| putative permease [Escherichia coli 042]
gi|291321018|gb|EFE60460.1| lipopolysaccharide export system permease lptG [Escherichia coli
B088]
gi|291429802|gb|EFF02816.1| membrane protein [Escherichia coli FVEC1412]
gi|291430480|gb|EFF03478.1| lipopolysaccharide export system permease lptG [Escherichia coli
B185]
gi|291472233|gb|EFF14715.1| conserved hypothetical protein [Escherichia coli B354]
gi|298280747|gb|EFI22248.1| lipopolysaccharide export system permease lptG [Escherichia coli
FVEC1302]
gi|300298210|gb|EFJ54595.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|300305970|gb|EFJ60490.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|300316133|gb|EFJ65917.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300356990|gb|EFJ72860.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300396608|gb|EFJ80146.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|300402053|gb|EFJ85591.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300410966|gb|EFJ94504.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300416318|gb|EFJ99628.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300419818|gb|EFK03129.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300450448|gb|EFK14068.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300463885|gb|EFK27378.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|300526258|gb|EFK47327.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300528917|gb|EFK49979.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300840035|gb|EFK67795.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|300847954|gb|EFK75714.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|301078220|gb|EFK93026.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|305851182|gb|EFM51637.1| Inner membrane protein yjgQ [Escherichia coli NC101]
gi|306907131|gb|EFN37638.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|307556432|gb|ADN49207.1| putative membrane protein YjgQ [Escherichia coli ABU 83972]
gi|308123189|gb|EFO60451.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|309704766|emb|CBJ04117.1| putative permease [Escherichia coli ETEC H10407]
gi|310331454|gb|EFP98710.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312289186|gb|EFR17080.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312948915|gb|ADR29742.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|315063569|gb|ADT77896.1| conserved inner membrane protein [Escherichia coli W]
gi|315138813|dbj|BAJ45972.1| inner membrane protein yjgQ [Escherichia coli DH1]
gi|315255621|gb|EFU35589.1| putative inner membrane protein [Escherichia coli MS 85-1]
gi|315293627|gb|EFU52979.1| putative inner membrane protein [Escherichia coli MS 153-1]
gi|315298979|gb|EFU58233.1| putative inner membrane protein [Escherichia coli MS 16-3]
gi|320639019|gb|EFX08665.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H7 str. G5101]
gi|320644389|gb|EFX13454.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H- str. 493-89]
gi|320649706|gb|EFX18230.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H- str. H 2687]
gi|320655103|gb|EFX23064.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660609|gb|EFX28070.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665536|gb|EFX32582.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H7 str. LSU-61]
gi|323157529|gb|EFZ43638.1| hypothetical protein ECEPECA14_0586 [Escherichia coli EPECa14]
gi|323162061|gb|EFZ47933.1| hypothetical protein ECE128010_1826 [Escherichia coli E128010]
gi|323171708|gb|EFZ57354.1| hypothetical protein ECLT68_3917 [Escherichia coli LT-68]
gi|323176177|gb|EFZ61769.1| hypothetical protein ECOK1180_4867 [Escherichia coli 1180]
gi|323181996|gb|EFZ67407.1| hypothetical protein ECOK1357_4674 [Escherichia coli 1357]
gi|323189856|gb|EFZ75134.1| hypothetical protein ECRN5871_1643 [Escherichia coli RN587/1]
gi|323380351|gb|ADX52619.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
gi|323935384|gb|EGB31732.1| inner membrane protein yjgQ [Escherichia coli E1520]
gi|323940180|gb|EGB36374.1| inner membrane protein yjgQ [Escherichia coli E482]
gi|323945995|gb|EGB42033.1| inner membrane protein yjgQ [Escherichia coli H120]
gi|323960303|gb|EGB55944.1| inner membrane protein yjgQ [Escherichia coli H489]
gi|323970484|gb|EGB65743.1| inner membrane protein yjgQ [Escherichia coli TA007]
gi|323975395|gb|EGB70496.1| inner membrane protein yjgQ [Escherichia coli TW10509]
gi|324005135|gb|EGB74354.1| putative inner membrane protein [Escherichia coli MS 57-2]
gi|324013726|gb|EGB82945.1| putative inner membrane protein [Escherichia coli MS 60-1]
gi|324019239|gb|EGB88458.1| putative inner membrane protein [Escherichia coli MS 117-3]
gi|324118823|gb|EGC12715.1| inner membrane protein yjgQ [Escherichia coli E1167]
gi|331035986|gb|EGI08224.1| inner membrane protein YjgQ [Escherichia coli H736]
gi|331040789|gb|EGI12947.1| inner membrane protein YjgQ [Escherichia coli M605]
gi|331046450|gb|EGI18540.1| inner membrane protein YjgQ [Escherichia coli M718]
gi|331051885|gb|EGI23924.1| inner membrane protein YjgQ [Escherichia coli TA206]
gi|331056982|gb|EGI28976.1| inner membrane protein YjgQ [Escherichia coli TA143]
gi|331061759|gb|EGI33685.1| inner membrane protein YjgQ [Escherichia coli TA271]
gi|331071248|gb|EGI42605.1| inner membrane protein YjgQ [Escherichia coli TA280]
gi|331071863|gb|EGI43199.1| inner membrane protein YjgQ [Escherichia coli H591]
gi|331081503|gb|EGI52664.1| inner membrane protein YjgQ [Escherichia coli H299]
gi|332083263|gb|EGI88494.1| hypothetical protein SB521682_5142 [Shigella boydii 5216-82]
gi|332083781|gb|EGI88999.1| hypothetical protein SD15574_5323 [Shigella dysenteriae 155-74]
gi|332346341|gb|AEE59675.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 360
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|294492514|gb|ADE91270.1| putative permease [Escherichia coli IHE3034]
gi|307629338|gb|ADN73642.1| hypothetical protein UM146_21570 [Escherichia coli UM146]
gi|315288387|gb|EFU47785.1| putative inner membrane protein [Escherichia coli MS 110-3]
gi|323950669|gb|EGB46547.1| inner membrane protein yjgQ [Escherichia coli H252]
gi|323955548|gb|EGB51312.1| inner membrane protein yjgQ [Escherichia coli H263]
Length = 360
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|284049007|ref|YP_003399346.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
gi|283953228|gb|ADB48031.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
Length = 363
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/363 (14%), Positives = 122/363 (33%), Gaps = 7/363 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K ++ L+ + + Q S S L +P
Sbjct: 1 MSILDKYILKQMMQPFLFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLIRLFLCLMPE 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I P L+ ++ L+ SE+ R+ G+S ++ P + ++ +F+V+
Sbjct: 61 VINYTFPMSMLLAALLTMGQLSSNSEITAMRSGGLSFRRIAAPILAAGFVVSLFSVVWAE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +I+ K ++ ++ + Q + + + E +
Sbjct: 121 KVVPPAKSEYERIIKVEIKRDTKPRTQNHVLIKQVSKGQLVRLTYARTFDEKQGMMKDIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDG 236
I K+ + A ++ + + L I
Sbjct: 181 IEDWDNGKVARIQRTPQAKWTQGTWIMEGGTITDLTGKDGVARTMTFDKQVLPISETPKA 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + E+ + + E + Y +PL LI + +
Sbjct: 241 ITLDQKDPDQMTIGELKMYIDILK-RQYMPTSKYEMEIYRRFTVPLASFFFALIGVPLGV 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R+ + + + + F+ Y+I+T M G+ G++ P+ AA P +L + ++
Sbjct: 300 QSQRTG-ASMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPLLAAATPNLLCGAFGCWMIY 358
Query: 357 QKE 359
+K+
Sbjct: 359 KKD 361
>gi|94968543|ref|YP_590591.1| YjgP/YjgQ family protein [Candidatus Koribacter versatilis
Ellin345]
gi|94550593|gb|ABF40517.1| transporter, YjgP/YjgQ family [Candidatus Koribacter versatilis
Ellin345]
Length = 792
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 10/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L + +L + L ++L V E+ + + S+ P
Sbjct: 430 PLLLDDMILRDFLLYFVMVLTTFVMLALVFTFFELLGDIVKNR-VSVVMLGDYLLNLSPS 488
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + P L+ +V F + R++E+ +A GISI+++ P + + ++ +
Sbjct: 489 LIYLMTPLSVLLAVLVTFGLMQRSNEITAMKATGISIYRVAFPVIAIAGVVAASLFVFDQ 548
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
K L + K + I I+ +N
Sbjct: 549 LYIPKANKRQETLRNEIKGKPPQTYLRPDR-KWIFGSNNTIYYYEVYDADQNRFGGISIF 607
Query: 182 ITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKN-----STTLNIPIKM 234
K + R A A + K ++ + I++ T
Sbjct: 608 QFDPKTFALQSRIYAQHAHWEDGLQKWVFEQGWMRKLNGSAIEEFKPFEVETIALAAEPP 667
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+K Q + E+++ + +S F R Q Y + P++ + M ++A
Sbjct: 668 AYFKKEVRQSQEMDYQELLRYIHDLQQSG-FDVVRFRVQLYKKLAYPIITLVMAILAIPF 726
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ R P VA I + + + ++ G + L + AA P ++ + +
Sbjct: 727 SVYRQRRGGPLAGVATAIGIAILYWVSAGLFEAMGNANQLPALLAAWAPNLIFGFAAGYM 786
Query: 355 LLQ 357
+L+
Sbjct: 787 VLR 789
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 117/376 (31%), Gaps = 22/376 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY L L ++F+ DL + + + + A + +P +
Sbjct: 5 ILTRYILGEVLSHGAIGLALFTFVIFMRDLGRLLE-LIVRNSAPLPSVAEIFFLTLPTAL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P LV ++ L+ SE+ R+ G+ + + S+ L I ++ +
Sbjct: 64 TVTLPMAVLVGILIGLSRLSADSEVTAMRSSGLGSLFFVRIVSIFSVALWILALVNNLYV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK---ILPENHIWEDFT 180
A L + K + + + + +K ++
Sbjct: 124 APRSAAALAHLQDKLKSSQASFEVQPRVFYEDFKNYVLYVEDSKSGSGSALWRGVFLADV 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE--------YQYGRIPIDKNSTTLNIPI 232
S K + R + + L+ + QY D+ + +P
Sbjct: 184 STPSQPKITMAERGVVVAEGPNSLHLHLENGTQQETNPKDPTQYQVSTFDQTDIPIQLPE 243
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH---------NYRAETQFYFLIVIPLM 283
D A S E+ + S + +F I +P
Sbjct: 244 TNDKPAPELVPVAELSTQELWRLAHSGGVSAGHYLGNSIAQVKARWYAVEFQRRIALPTA 303
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ +TL+ + L SR + I F Y + I S G+ G L P +
Sbjct: 304 CLVLTLVGIPLGLS-SRRGGKSMGFVLTIILVFAYYVVSLIGVSLGRQGKLPPAVGVWMA 362
Query: 344 VILTISLSILILLQKE 359
++ + I++L + +
Sbjct: 363 NVVFLVAGIMLLHRVD 378
>gi|289209273|ref|YP_003461339.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
gi|288944904|gb|ADC72603.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
Length = 357
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 128/361 (35%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + L T ++ + L V + + G NY ++ + A +P
Sbjct: 1 MTTVLGRYVIRQVLIGTTLAVVLLVALDAVFAMIDELRDTG-AGNYGVTEAMLYVALTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P LV ++ NL SEL RA G+++ + + + +++ + +++
Sbjct: 60 RRMYEMLPPAALVGGLLWLGNLAANSELTAMRAAGMTLGRFIVWVLQAGLVVVMVMLIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + E L + + + W + + + + +
Sbjct: 120 EFFAPASETRAQALKASAF-DEEISVGSMGLWARDGQ-----RMIHAESVLAGNQLVGVR 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
I + A A + +L+ V + T++ I + F
Sbjct: 174 IIEFTGDREPSWITRAARARFVDGDWRLEDVERSLLSHDRVVAEHRAEETIDRLIAPEYF 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ + + + + N E F+ +P M L+A
Sbjct: 234 DVLVVEPSQMAALDLSRYIDYLRE-NQLDAAPYEVAFWQRFTLPASTFVMLLLAIPFLFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + GI G ++ + G L P+ AA +PV+L +++++ L +
Sbjct: 293 SQREGGAGQRLFIGIAIGVSFVIVMRAITHLGLVYNLPPLLAACLPVLLFLAIALFALRR 352
Query: 358 K 358
Sbjct: 353 M 353
>gi|260914417|ref|ZP_05920886.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
gi|260631518|gb|EEX49700.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
Length = 358
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + +P
Sbjct: 3 MMNTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRLVGK-GTYDIWQAIAYTVLTMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ +++ NL SEL++ +A G S ++ + +I L I T+ +
Sbjct: 62 KDVETFFPMAALLGSLIALGNLASRSELIVMQASGFSRLKIGLAVMKTAIPLVIITMAIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + + D
Sbjct: 122 EWGIPQTEQFARDMRSKAMTGGSLLSVRDGFWAKEGSDFIYVKRITDDLE-----LNDIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGF 237
+ + ++ K AD A+ K L ++ E + I + ++ + D
Sbjct: 177 IYSFGENRQLKQVKHADSAVYEEGKWVLHQLNESEITPDEIKTVNRLNSEWKTSLTPDNL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + ++F + + E ++ + P+ + M ++A S
Sbjct: 237 GIASLRPTSLSISGLSNYIAFLKDTGQESK-KFELTYWRKLFQPISVGVMMMLALSFIFG 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GIF GF+ Y + I + P+A AL+P ++ + ++ +L +
Sbjct: 296 PLRSVTAGARIVTGIFFGFLFYVVNEIFGPLSLVYNVAPLAGALMPSVMFLLITWWLLSR 355
Query: 358 K 358
K
Sbjct: 356 K 356
>gi|167032003|ref|YP_001667234.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
gi|166858491|gb|ABY96898.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
Length = 353
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 128/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + + Y++ P
Sbjct: 1 MAK-LDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDLSDT--YTVMEAGNFVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + I + N + T
Sbjct: 118 EYVAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHI-----NAVQPNGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + KI+ A A +D L V + + ++ + +
Sbjct: 173 RYRFDNERKIVTSSFARRAQYQDDHWLLADVRTTYFRGDHTEVVNAPQERWDVSLTPELL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + + +N R F+ ++ P++ A+ L+A S
Sbjct: 233 NTVILAPESLSITGLWDYIHYLSDQG-LNNARYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|332535154|ref|ZP_08410963.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035424|gb|EGI71923.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 354
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 126/360 (35%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y + L+TT + LL + + +I + +G +Y + + +P
Sbjct: 1 MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVG-RGSYDLMTAMLYTLYTIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ + L SELV+ +A G+S Q++ + +I + + + +
Sbjct: 60 DLVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMAVCMMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + ++ Q GD + W + + +I + + EN
Sbjct: 120 WGAPEAQLHAKEMRNQAIHGGDVFNTQKGVWAKDGSNFINI-----EDVDENGRLNGVHM 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
DK ++ A A+ + L+ V + + +
Sbjct: 175 YHFDKSLELTQITKAKDALSRKEGWLLRDVNKVIITSEKTTTEQLPEEFYPSQLTAEKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S SF + +++ N E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPESLSFTGLWSYLTYLE-QNEQDTSTYELALWRKLMQPVSVAVMLLVALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + G+ +G + + I + + A++P I+ I + ++ ++
Sbjct: 294 LRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSIIFIGFATYLMNKR 353
>gi|212710412|ref|ZP_03318540.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
30120]
gi|212686832|gb|EEB46360.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
30120]
Length = 358
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/359 (19%), Positives = 138/359 (38%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILMTLFLLVSLSGIIKFVEQLRKVGD-GDYTAMSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIDIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVTMIMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA +GE+ + + +D W + ++ I ++ F
Sbjct: 120 EWIAPAGEQWARNYRAEKIVGSSLVVTDSGMWAKDAHDFIYIQRIKDASTIQDVSIYRFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ R D ++++ ++ Q + + + +
Sbjct: 180 DHRKLESVMFAARGTYDADKKLWVLSQVQESILGSQQKITGSQRLTYDWKTNLTPEKLGI 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S S S + + +++ +S + + + I+ PL M L+A S
Sbjct: 240 VSLNADSLSIRGLYQYITYLKESGQVASV-YQLSMWQKILAPLSAAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V GI GF+ Y + ++ + PV AA +P +L + +SI +L+++
Sbjct: 299 RTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVVAAALPSVLFLGVSIFLLVKR 357
>gi|77361337|ref|YP_340912.1| hypothetical protein PSHAa2421 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876248|emb|CAI87470.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 355
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 124/361 (34%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y + L+TT + LL + + +I + +G +Y + + +P
Sbjct: 1 MMKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVG-RGSYDLMTAMLYTLYTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ + L SELV+ A G+S Q+++ + ++ + + + +
Sbjct: 60 GDLVVFFPMAALIGGLTGLGALASNSELVVMHAAGMSRLQIISSVMKTAVFMALCMMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ Q GD + W + N +I + + +N
Sbjct: 120 EWGVPEAQLQAKEMRNQAIHGGDVFNAQKGVWAKDGNNFINI-----EDVDQNGKLNGVH 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF 237
D+ + A A+ + L+ V + + I + +
Sbjct: 175 MYHFDQSLSLTQITKAKDALSRENGWLLRGVNKVKISDELITTEQVPEEFYPSQLTAEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S SF + + + N E + ++ P+ + M L+A S
Sbjct: 235 GVVSVKPESLSFTGLWSYLDYLK-QNDQDTSTYELALWRKLMQPISIAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + G+ +G + + I + A++P I+ + ++ +
Sbjct: 294 PLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAFIGAVVPSIIFTGFAAYLMNK 353
Query: 358 K 358
+
Sbjct: 354 R 354
>gi|283786944|ref|YP_003366809.1| permease [Citrobacter rodentium ICC168]
gi|282950398|emb|CBG90046.1| putative permease [Citrobacter rodentium ICC168]
Length = 360
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNSFVYIERVKGDEELGGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDPEQKVWRLSQVDESSLQDPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + PV AL+P +S+ ++++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVIGALLPSASFFFISLWLMMRK 359
>gi|30065451|ref|NP_839622.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
gi|56480550|ref|NP_709939.2| hypothetical protein SF4227 [Shigella flexneri 2a str. 301]
gi|30043715|gb|AAP19434.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
gi|56384101|gb|AAN45646.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|313646463|gb|EFS10925.1| hypothetical protein SF2457T_5378 [Shigella flexneri 2a str. 2457T]
gi|332748940|gb|EGJ79363.1| hypothetical protein SFK671_4979 [Shigella flexneri K-671]
gi|332749802|gb|EGJ80215.1| hypothetical protein SF274771_5046 [Shigella flexneri 2747-71]
gi|332763113|gb|EGJ93356.1| hypothetical protein SF293071_4855 [Shigella flexneri 2930-71]
gi|333010221|gb|EGK29654.1| hypothetical protein SFVA6_0009 [Shigella flexneri VA-6]
gi|333011252|gb|EGK30666.1| hypothetical protein SFK272_0205 [Shigella flexneri K-272]
gi|333011952|gb|EGK31337.1| hypothetical protein SFK304_5275 [Shigella flexneri K-304]
gi|333012149|gb|EGK31531.1| hypothetical protein SFK227_5242 [Shigella flexneri K-227]
Length = 360
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I + F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|170723396|ref|YP_001751084.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
gi|169761399|gb|ACA74715.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
Length = 353
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 127/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + + Y++ P
Sbjct: 1 MVK-LDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDLSDT--YTVMDAGWFTLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + + I + N + T
Sbjct: 118 EYVAPISENKAQADRSLAQGGGEAQSSKRGMWHRQGDEFVHI-----NSVQPNGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGF 237
D + KI+ A A ND L V + + + ++ +
Sbjct: 173 RYRFDDERKIVTSSFARRARYENDHWVLSDVSTTYFRGDHTEVVKSSEERWDVSVTPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + + +N R F+ ++ P + A+ L+A S
Sbjct: 233 NTVVLAPESLSITGLWDYIHYLSDQG-LNNARYWLAFWTKVLQPAVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGVCALAGLWLLRR 351
>gi|209921759|ref|YP_002295843.1| hypothetical protein ECSE_4568 [Escherichia coli SE11]
gi|209915018|dbj|BAG80092.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 360
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEEFGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|332749215|gb|EGJ79636.1| hypothetical protein SF434370_4578 [Shigella flexneri 4343-70]
gi|333009229|gb|EGK28685.1| hypothetical protein SFK218_0005 [Shigella flexneri K-218]
Length = 360
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+++
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMVIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I + F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|82779328|ref|YP_405677.1| hypothetical protein SDY_4286 [Shigella dysenteriae Sd197]
gi|81243476|gb|ABB64186.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 361
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 123/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A GE++ + Q G + W + N I F
Sbjct: 124 WAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|110807998|ref|YP_691518.1| hypothetical protein SFV_4231 [Shigella flexneri 5 str. 8401]
gi|110617546|gb|ABF06213.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 360
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I + F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|322418226|ref|YP_004197449.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
gi|320124613|gb|ADW12173.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
Length = 360
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 134/358 (37%), Gaps = 9/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K YL+ L + + V+D E ++ S + T++P
Sbjct: 1 MRILTRYVAKAYLRMLGLCLGSFITIYLVVDFMEKVSRFT-RAGASWKYLVLFFITKIPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ + + +SEL R+ G+S+ ++ P + S+L+ + +++
Sbjct: 60 MVVDSAPLAVLMATLLTLGSFSLSSELTAMRSCGVSLARISAPILAISVLMSLVVLMLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ I + + I + ++ + A P + + T
Sbjct: 120 FVIPKSYAQRIYIQEVLIQKKSPSTY--FRQHNIWHREEGNVLRASLFEPSQNQLKGVTL 177
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDG 236
+ K + R DA L + N K VV ++ + +K
Sbjct: 178 WEVQPKTGLPLRRTDAALGQLGNQGWVFKDVVVREFEGADISRTRKYPQLAAPLKLKPAD 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + E+ + ++ + R TQF+ I +P M + +L
Sbjct: 238 LKVLGKYSDSMTLRELNRY-CKKIQAGGYDATRYITQFHSRISLPFGCAVMAFLGIPFAL 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + I GF+ I +++ S G+ G+L P+AAA + ++ +
Sbjct: 297 RGGRSSGIAFGIGLSIGVGFLYVIINSVIISVGQVGLLPPIAAAWATNFIFLAAGGWL 354
>gi|15804854|ref|NP_290895.1| hypothetical protein Z5874 [Escherichia coli O157:H7 EDL933]
gi|26251171|ref|NP_757211.1| hypothetical protein c5363 [Escherichia coli CFT073]
gi|254037286|ref|ZP_04871363.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|291285674|ref|YP_003502492.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
gi|332281055|ref|ZP_08393468.1| conserved hypothetical protein [Shigella sp. D9]
gi|12519274|gb|AAG59461.1|AE005658_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111603|gb|AAN83785.1|AE016771_296 Hypothetical protein yjgQ [Escherichia coli CFT073]
gi|537104|gb|AAA97159.1| ORF_o361 [Escherichia coli str. K-12 substr. MG1655]
gi|13364717|dbj|BAB38662.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209749438|gb|ACI73026.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749440|gb|ACI73027.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749442|gb|ACI73028.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749444|gb|ACI73029.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749446|gb|ACI73030.1| hypothetical protein ECs5239 [Escherichia coli]
gi|226840392|gb|EEH72394.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|290765547|gb|ADD59508.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
gi|332103407|gb|EGJ06753.1| conserved hypothetical protein [Shigella sp. D9]
Length = 361
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|91213818|ref|YP_543804.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
gi|117626606|ref|YP_859929.1| hypothetical protein APECO1_2132 [Escherichia coli APEC O1]
gi|237703938|ref|ZP_04534419.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91075392|gb|ABE10273.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
gi|115515730|gb|ABJ03805.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|226901850|gb|EEH88109.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 361
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|24372948|ref|NP_716990.1| hypothetical protein SO_1370 [Shewanella oneidensis MR-1]
gi|24347091|gb|AAN54435.1|AE015581_2 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 352
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 124/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G Y++ + VP
Sbjct: 1 MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVG-RGTYTMMDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + + T
Sbjct: 120 WGAPIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VADIDKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ + K+ + A+ A+ D L V + + D
Sbjct: 175 YKFNSELKLTNVVHAESALFSKDSWLLTDVKRTDLSYDEVKLEHLDEDVWRSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + N SN R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIRGLMGYLEYLN-SNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFYFIRR 352
>gi|323496139|ref|ZP_08101199.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
21326]
gi|323318883|gb|EGA71834.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
21326]
Length = 356
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +G +Y + VP
Sbjct: 1 MFKILDLYIGRTIIATTTMVLATLIGLSGIIRFVEQLRSVG-RGSYDLLHAFYFVVLGVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++ L +SELV+ +A G S + + ++ L + +L+
Sbjct: 60 RDIEMFFAMSALLGALIGLGMLASSSELVVMQASGYSKLDIGISVLKTAVPLMLIIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ +L G W + ++ I L +W
Sbjct: 120 EWGAPQAQKMARELRSFSISGGQIVSVRAGVWARDADDFIFIGKVEDDNLYGLKVWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + ++ + + + + + D
Sbjct: 180 DKKLYQVLFAPEADYQGNNQWLLKDTQITDMADRVELAKSTVRE-YNWHTTLVPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + +++ +S + R E + + P + M L+A S R
Sbjct: 239 KVEPEELAMSGLYDYVTYLKES-EQDSSRYELALWRKVTQPFSIAVMMLMALSFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y + PV A++P I+ ++++IL+L +K
Sbjct: 298 SVSMGARILSGVVAGFTFYISSEFFGPLTLVYGIPPVFGAIMPSIVFLTIAILLLRRK 355
>gi|311281180|ref|YP_003943411.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
gi|308750375|gb|ADO50127.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
Length = 360
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K L T L L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTILTTILMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAISVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ +L Q + W + + I F
Sbjct: 123 WMAPQGEQMARNLRAQAMYGSSLLSTQQGMWAKDGHNYIYIERIKGADELGGISIYSFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S+T + D
Sbjct: 183 KRRLQSVRYAASAKFDADKKVWRLSQVDESNLTNPLQITGSQTVSSTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + + PL + M L+A S R
Sbjct: 243 ALDPDALSISGLYNYVKYLKSSGQ-DPGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +++++
Sbjct: 302 SVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSATFFLISLWLMIRR 359
>gi|114562104|ref|YP_749617.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
gi|114333397|gb|ABI70779.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
Length = 352
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 127/359 (35%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + T+ LL L +I + +G Y++ + VP
Sbjct: 1 MRILDLYIARMIVSTSSLCLLILTGLSGIIKWVDQLRLVG-RGAYTMLDAGIYVLFLVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ + G+S Q+ + +I L I + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQVSGMSRLQITQSAMKTAIPLMIMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A EK +L G KS W + + +I + + + + +
Sbjct: 120 WGAPIAEKSAKELQATKISGGSLIKSHRGIWAKDGDLFVNIGE-----VQDVNTLSNISL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKL---KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ A+ A+ +D +L + I ++ + D
Sbjct: 175 YEFNDQQELTRVTHANTAVFVDDVWQLSVVENTTVKDDRVIRDHLDTDVWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S +I + + N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSISGLIDYLDYLKV-NQQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L V A+ P +L L++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAVVGAIAPSMLFTGLALYYIRK 352
>gi|104783410|ref|YP_609908.1| hypothetical protein PSEEN4441 [Pseudomonas entomophila L48]
gi|95112397|emb|CAK17124.1| conserved hypothetical protein, putative membrane protein
[Pseudomonas entomophila L48]
Length = 353
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 126/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + + Y++ P
Sbjct: 1 MVK-LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMSDLSDT--YTVMDAGSFVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + I + N + T
Sbjct: 118 EYVAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEFVHI-----NSVQPNGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D++ KI A A + K L V + + ++ + +
Sbjct: 173 RYRFDEQRKIQTSSFARKAQYHEGKWVLNDVATTYFRGDHTEVVKAPEEVWDVSVTPELL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + + +N R F+ ++ P + A+ L+A S
Sbjct: 233 NTVVLAPESLSITGLWDYIHYLSDQG-LNNSRYWLAFWTKVLQPAVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + ++ +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGICALAGLWLMRR 351
>gi|319944263|ref|ZP_08018539.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
gi|319742558|gb|EFV94969.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
Length = 382
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/380 (16%), Positives = 125/380 (32%), Gaps = 26/380 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + LLG + L DL + +G+ Y + + + +P
Sbjct: 1 MKLMARYLTREIAGGIMAVLLGFLGLFAFFDLINELDDIGQ-GGYRLPQAVLYVLLGLPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +++P L+ I + SE RA G+S L +V +LL + T +
Sbjct: 60 HIYELMPVAALIGCIYALAQFAQNSEFTAMRAAGMSRQLALRGVLVLGVLLAVLTAVAGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK-SDIIPWMQISNPQQDIFIGAKKILPENHI----- 175
IA E+ L G W++ S D + + +
Sbjct: 120 WIAPMAEQRAQQLRMDVLGKGSGVGAFRSGLWLKDSVRGPDGQRLQTRFVNIGTLEADGG 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQYGRIPID------- 222
D ++ A+ +L+ V ++
Sbjct: 180 LSKVAIHEFDTDFRLTAVIHAEHGRYQPAHNGQASSWRLEGVETTRFNVSRTQTGYDALH 239
Query: 223 -----KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ T + + S + + S + N + R E +
Sbjct: 240 AAVERRPETVWVSDLNPALLSVLAIAPDRMSALALWRYTSHLKE-NAQNANRYELALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+V PL ++ M ++A R+ + + +GI G Y + + + G P
Sbjct: 299 VVYPLAIIVMLMLALPFGYLQVRAGGIGLKLFFGISLGVGFYIMNGLFSNLGLINTWPPW 358
Query: 338 AAALIPVILTISLSILILLQ 357
A IP IL ++L++++L +
Sbjct: 359 LAVSIPSILFLALALVMLNR 378
>gi|183600431|ref|ZP_02961924.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
gi|188020227|gb|EDU58267.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
Length = 358
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 129/359 (35%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ Y+ V +P
Sbjct: 1 MFGVLDRYIGRTILNSILMTLFMLVSLSGIIKFVEQLRKVGD-GEYTTLGAGVFTLLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L I +L+
Sbjct: 60 KDIDIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIALSVMKTAIPLVIVAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A S ++ + + +D W + I + + F
Sbjct: 120 EWVAPSADQWARNYRAEKIVGNSLVVTDEGMWAKDGPDFIHIQRVSDTTSIQEVSIYRFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D ++ + ++ + + + + +
Sbjct: 180 EQHKLTSVMFASSGAYDKDNQLWVLSQVDESILSSEKKITGSQRLTYEWKTNLTPEKLGI 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S S S + + +++ +S E + I+ PL M +A S
Sbjct: 240 VSLSADSLSIRGLYQYIAYLKESGQVAAV-YELSMWKKILAPLSAAVMMFMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V GI GF+ Y + + + P+ AAL+P +L + +SI++L+++
Sbjct: 299 RTVPMGVRVVSGIVGGFLFYVLNEGFGKWSLVYSIPPIIAALLPSVLFLGVSIVLLVKR 357
>gi|117925963|ref|YP_866580.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
gi|117609719|gb|ABK45174.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
Length = 371
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/369 (19%), Positives = 145/369 (39%), Gaps = 11/369 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL+RY + +L+ + + L F++D E + G + L R+P
Sbjct: 1 MP-ILFRYLLQLFLQGFVKVFSIFIALFFLMDGAEQIRRFGGRDHVIWQDMVELIFLRMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q +P I L+ + V L R +EL + R+ G+S+ ++L PF++G +++ +L++
Sbjct: 60 HFFTQFLPPIALLTTLFVVTRLTRLNELTVIRSGGVSLVRILIPFLLGGVMVAGVQMLLL 119
Query: 121 NPIATSGEKIG------IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ I ++L +Q + + + + AK+ +
Sbjct: 120 DQIVPRTNAAAERSIFRMNLPEQAALYESMVSLEGVRKDNLWIRDGGQILHAKRAYGDKR 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIP 231
+ + T ++ ++ R DA A N+ L Y++ T I
Sbjct: 180 LLLEVTIFRFTPEHDLLMRADAHKATWENEGWVLHNGQIYRFNGHTTQSEPFTRMPWAIN 239
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ + ++ + Q S + K + + Y + PL +A L+A
Sbjct: 240 LEKEQIKRATPQPEELSLQALWKHADRLAREG-YDATPYWVTLYRKLADPLTTLAAILLA 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L R + G +GF ++ ++ + + G L P AA PV+ I +
Sbjct: 299 FPFALRLHRMGGTFRSMLMGFITGFFMFVVVDLFTALGFGERLPPFLAAFAPVMFFICIG 358
Query: 352 ILILLQKED 360
+LL E+
Sbjct: 359 GFLLLHLEE 367
>gi|281603538|gb|ADA76522.1| Inner membrane protein yjgQ [Shigella flexneri 2002017]
Length = 361
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I + F
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|39997021|ref|NP_952972.1| hypothetical protein GSU1923 [Geobacter sulfurreducens PCA]
gi|39983909|gb|AAR35299.1| membrane protein, putative [Geobacter sulfurreducens PCA]
gi|298506038|gb|ADI84761.1| membrane protein, YjgQ-related [Geobacter sulfurreducens KN400]
Length = 358
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/354 (18%), Positives = 129/354 (36%), Gaps = 7/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY YLK L + + VID E ++ ++P II
Sbjct: 3 ILTRYIAGAYLKILGLCLASFVAIYLVIDFLEKIGRLLRFQ-PRWIDIIQYFICKLPEII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+IP L+ ++ L+R SE+V R G+ + ++ P +V + + + T+ +
Sbjct: 62 TQVIPLAVLMSTLLTLGMLSRNSEIVAMRGCGVGLGRISAPLIVIAAAVSLLTIFSNEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
S + + Q I + + + A+ P T
Sbjct: 122 LPSSYRQMRYVDQVLIRKQGTNTF--FRQNNIWHKDESAIMMARVFDPGRQALRGITLWR 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ + R DA + K V ++ S + +K++ +
Sbjct: 180 FSDGMRPVSRIDAAEGTWDGARWTFKTVTVRGLAGPSVETRTLASLPAELNLKIEDLKVV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + F+++ + + + R E Q + I +P + M + +L R
Sbjct: 240 DKYADNMGFFKLRDYVRKLK-AGGYDTTRYEAQMHSKISLPFASLIMAFLGIPFALRGGR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ + + I GF + +I+ SFG++GIL P+ +A +L I +
Sbjct: 299 SSGVALGITASIGIGFAYFITNSILISFGQTGILPPLISAWAANVLFALSGIWL 352
>gi|332086995|gb|EGI92129.1| hypothetical protein SB359474_4824 [Shigella boydii 3594-74]
Length = 360
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|229845238|ref|ZP_04465371.1| predicted permease [Haemophilus influenzae 6P18H1]
gi|229811833|gb|EEP47529.1| predicted permease [Haemophilus influenzae 6P18H1]
Length = 358
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 127/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L VI E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAVIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGNNFVFVRRVTDDAKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K ++ ++ + I + T + D
Sbjct: 180 QQHNLTELKHSNQASYSEDEAKWTLRQVNHSTITKDEIITTNHLLETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPISVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQMSVVYGIPAIFGALIPSLLFIVMIWWLLSHKRD 358
>gi|315617676|gb|EFU98282.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 360
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA GE++ + Q G + W + N I F
Sbjct: 123 WIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISLWLLMRK 359
>gi|145629200|ref|ZP_01784999.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145639140|ref|ZP_01794747.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|144978703|gb|EDJ88426.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145271702|gb|EDK11612.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|309750721|gb|ADO80705.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2866]
Length = 358
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|300935934|ref|ZP_07150887.1| putative inner membrane protein [Escherichia coli MS 21-1]
gi|300458870|gb|EFK22363.1| putative inner membrane protein [Escherichia coli MS 21-1]
Length = 360
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGISPIIGALLPSASFFLISLWLLMRK 359
>gi|301028101|ref|ZP_07191379.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|299878818|gb|EFI87029.1| putative inner membrane protein [Escherichia coli MS 196-1]
Length = 360
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + + L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVVMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|323166626|gb|EFZ52385.1| hypothetical protein SS53G_3092 [Shigella sonnei 53G]
Length = 360
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ GE++ + Q G + W + N I F
Sbjct: 123 WVASQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|218672883|ref|ZP_03522552.1| putative permease protein [Rhizobium etli GR56]
Length = 340
Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 134/340 (39%), Positives = 199/340 (58%), Gaps = 2/340 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTIPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A
Sbjct: 301 RFNQSRPVILGGILSGFMLYVITVLVKAFGSSGVVPPFVA 340
>gi|37522902|ref|NP_926279.1| hypothetical protein gvip459 [Gloeobacter violaceus PCC 7421]
gi|35213904|dbj|BAC91274.1| ycf84 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/370 (13%), Positives = 113/370 (30%), Gaps = 16/370 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y L L+ + L ++ + S++ A + A R+P +
Sbjct: 15 KIVDLYLVSELLLPFLFGVATFASLGMIVGSLFELVRAMLDNGLSVTVAAQVFALRLPSV 74
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ +E V RA G+S+++L+ P + +L+ T +
Sbjct: 75 IVITFPTAMLLATLLAYARLSGDAETVAMRACGMSVYRLVLPALAVGLLVTGATFMCNEL 134
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-----NPQQDIFIGAKKILPENHIWE 177
+ + L+ Q D + + ++
Sbjct: 135 VVPASNAEASRLLFQAIDRDKPDFQKDNIIYPEYGFVTPRDGRPTYHTLVRLFYARQFAG 194
Query: 178 DFTSITIDKKNKIIHRKDADL-----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ L+ Y +N
Sbjct: 195 GIMRELTVLDYSQDAINQVITAAAAVYDNRSGSWTLQDGTVYVVAPDGSYRNVLRFKRQQ 254
Query: 233 KMDGFQKFS----EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + ++ + S + IP+
Sbjct: 255 VKLSERPEQFGGGARPEDLPIAQLSDYIRRLELSQQQVRT-LQVSLQQKYAIPVTCFVFA 313
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ A++ L R++ + + I F Y ++ + ++ G++G++ P A P + T
Sbjct: 314 LVGATLGLRRVRTSN-ALGLGLSILIIFGYYLLMFVAQALGQTGVIAPWLGAWAPNLATG 372
Query: 349 SLSILILLQK 358
+L +L+L +
Sbjct: 373 ALGVLLLWRT 382
>gi|157147732|ref|YP_001455051.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
gi|157084937|gb|ABV14615.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
Length = 360
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 QRRLQSVRYAASAKFDADNKVWRLSQVDESDLKDPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359
>gi|145631589|ref|ZP_01787355.1| predicted permease [Haemophilus influenzae R3021]
gi|144982789|gb|EDJ90315.1| predicted permease [Haemophilus influenzae R3021]
Length = 358
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 129/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|145635440|ref|ZP_01791141.1| predicted permease [Haemophilus influenzae PittAA]
gi|145641037|ref|ZP_01796618.1| predicted permease [Haemophilus influenzae R3021]
gi|145267314|gb|EDK07317.1| predicted permease [Haemophilus influenzae PittAA]
gi|145274198|gb|EDK14063.1| predicted permease [Haemophilus influenzae 22.4-21]
Length = 358
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 130/360 (36%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|127511874|ref|YP_001093071.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
gi|126637169|gb|ABO22812.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
Length = 352
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 130/359 (36%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G Y++ + +P
Sbjct: 1 MRILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVG-RGTYTMVDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ G +L G KS W + + +I + + + +
Sbjct: 120 WGAPVAERHGKELQAVKLSGGSLFKSSRGIWAKDGDLFVNIGE-----IEDINSLHNIVL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
D K ++ +A + D +L V + + + + D
Sbjct: 175 YEFDDKLNLVGTIEARRGVYSKDHWRLLDVRQTKITPEQVSLTDLTLYRWESTLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N + R E + I+ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIQGLVDYLEYLRVNNQ-DSGRYELALWRKIMQPITVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L V A++P ++ S +I + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYICNEIFGPMTLVYGLPAVLGAVMPPLIFSSAAIYYIRR 352
>gi|261401001|ref|ZP_05987126.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|269209118|gb|EEZ75573.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|309378517|emb|CBX22870.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 356
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 143/361 (39%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + T+Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P TL+ ++ L SEL + +A G+S +LL+ ++ + T +
Sbjct: 60 RAYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + + ++ NG + W++ +Q+ I +++LP++ +
Sbjct: 120 WIAPALNQKAENIKAAAI-NGKISTGNTGLWLK----EQNSIINIREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
DK + + + + +LK + G ++ +S L I +K + +
Sbjct: 175 ERNDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSSAAEENLPISVKRNLME 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + + +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTAYISHLE-NNRQNTQIYAIALWHKLVYPVAAWVMALVALAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A ++P L + I ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGIWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|90408709|ref|ZP_01216858.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
gi|90310191|gb|EAS38327.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
Length = 354
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 129/360 (35%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY K T L + L +I E +G+ +Y + ++P+
Sbjct: 1 MGILDRYIGKTVFAATFLTLFVLLGLSSIIKFVEQMRSVGQ-GSYDVLAAGYFVLLKMPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ ++ +L +SELV+ +A G+S +++ + ++ + +L+
Sbjct: 60 EMTVFFPMAALIGALIGLGSLASSSELVVMQAAGMSKFRIAGAVLKTAVPMVFAVMLLAE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +K + + + W++ ++ I + +
Sbjct: 120 FVAPVTDKEAYSMRDLARSGQSSVSNKYGVWVKDADAFISIGR-----MNSQSELFNVRF 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
++ ++ H A L+ ++ K+S +
Sbjct: 175 YFFNESMQLDHAVLAKKVSYRGGYWLLEDSTWTKFESDRTNVEHKDSDVWQTDLTPKKLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S +I +++ +N R + V+P +V M L++ S
Sbjct: 235 VILSDPSKMSMRDIYGYITYLE-NNQQDANRYLLILWRKAVLPFTVVVMMLLSVSFIFGG 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + GI SGF + + L P+ AL+P +L + +++ +L ++
Sbjct: 294 LRTVTMGTRLILGIASGFAFHVSGELFGPASLVFGLSPLLGALLPSMLVLCIAMYLLRRQ 353
>gi|206575795|ref|YP_002240776.1| putative permease [Klebsiella pneumoniae 342]
gi|288937432|ref|YP_003441491.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|290512173|ref|ZP_06551540.1| permease [Klebsiella sp. 1_1_55]
gi|206564853|gb|ACI06629.1| putative permease [Klebsiella pneumoniae 342]
gi|288892141|gb|ADC60459.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|289775168|gb|EFD83169.1| permease [Klebsiella sp. 1_1_55]
Length = 360
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKK-SGQGSYDALGAGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + I F
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + ++ + S T + D
Sbjct: 183 ERRLESVRYAASAKFDSENKVWRLSQVDESNLTDPKQVTGSQMVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++++K
Sbjct: 302 SVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359
>gi|220906932|ref|YP_002482243.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
gi|219863543|gb|ACL43882.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
Length = 374
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/363 (15%), Positives = 115/363 (31%), Gaps = 9/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY L+ + +L I + + +++ + R+P I
Sbjct: 9 IIDRYILAEMAMPFLFGVAVFTLLAATIGVVFDLLRWLADNRLTLAVALQILGLRLPEFI 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++VF L R SELV + G+S+++L P ++ LL T + I
Sbjct: 69 ILALPMSMLLTPLLVFNTLGRRSELVALQGCGVSVYRLALPILLVGFLLAGLTFGLNETI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + ++ + + + I + +
Sbjct: 129 APQTNYQALQIQTAALRRPQQKFREKNIFYREFVDNTLSRIFYARQFDGQQMQRITILNF 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--------KNSTTLNIPIKMD 235
K I +A ++ Y T L +P
Sbjct: 189 DQGKLDQIIVANAAEWDQKQKHWDFQQGTVYSLTPNTESSSYTSIQPFQVTQLPLPSTPL 248
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + +E + + ++ R + P V LI A++
Sbjct: 249 QLATETRKIEQMNRWEATQFLRAIEQTGDQKWIRRWKVGIQEKNAFPFTCVVFGLIGAAL 308
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L +Q + F Y + + S G+ G+L P+ AA + ++ + +
Sbjct: 309 GLSSYNRSQTSRGFGLSLAMIFAYYLLNSTCISLGEGGLLSPLLAAWLSPLVGLLTGGWL 368
Query: 355 LLQ 357
L +
Sbjct: 369 LFR 371
>gi|119773934|ref|YP_926674.1| hypothetical protein Sama_0797 [Shewanella amazonensis SB2B]
gi|119766434|gb|ABL99004.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 352
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + T+ LL L +I + +G +Y++ V +P
Sbjct: 1 MSILDWYIARVLISTSSLCLLVLTGLSGIIKWVDQLRLVG-RGSYTMMDAGVYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ + SELV+ +A G S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGLGMMAANSELVVMQASGQSRLQITVSAMKTAVPLMLLVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + E+ +L G KS W + + +I + + + + T
Sbjct: 120 WVAPAAEQRANELKATMISGGSLIKSHRGIWAKDGDLFVNIGE-----VSDINTLGNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
D++ ++ H +A A +++ V + I + + D
Sbjct: 175 YEFDQQERLNHVVNARRATFDGKAWQMQGVSKTHITEEAIVREDIDSELWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S ++ + + ++ R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPESLSIQGLMGYLDYLRINSQ-DPSRYELALWRKLMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF Y I L A P +L ++ + +
Sbjct: 294 LRSVTMGARVLLGVVAGFSFYICNEIFGPMTMVYQLPAFIGAGAPALLFAGAAVFYIRR 352
>gi|152973139|ref|YP_001338285.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238892751|ref|YP_002917485.1| putative transport system permease component [Klebsiella pneumoniae
NTUH-K2044]
gi|330016469|ref|ZP_08308442.1| lipopolysaccharide export system permease protein LptG [Klebsiella
sp. MS 92-3]
gi|150957988|gb|ABR80018.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545067|dbj|BAH61418.1| putative transport system permease component [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|328528830|gb|EGF55773.1| lipopolysaccharide export system permease protein LptG [Klebsiella
sp. MS 92-3]
Length = 360
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKK-SGQGSYDALGAGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + I F
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + ++ + S T + D
Sbjct: 183 ERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++++K
Sbjct: 302 SVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359
>gi|313668050|ref|YP_004048334.1| hypothetical protein NLA_7120 [Neisseria lactamica ST-640]
gi|313005512|emb|CBN86948.1| conserved hypothetical integral membrane protein [Neisseria
lactamica 020-06]
Length = 356
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 143/361 (39%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + T+Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P TL+ ++ L SEL + +A G+S +LL+ ++ + T +
Sbjct: 60 RAYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + + ++ NG + W++ +Q+ I +++LP++ +
Sbjct: 120 WIAPALNQKAENIKAAAI-NGKISTGNTGLWLK----EQNSIINIREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
DK + + + + +LK + G ++ ++ L I +K + +
Sbjct: 175 ERNDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSTAAEENLPISVKRNLME 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + + +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTAYISHLE-NNRQNTQIYAIALWHKLVYPVAAWVMALVALAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A ++P L + I ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGIWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|83814343|ref|YP_445251.1| hypothetical protein SRU_1124 [Salinibacter ruber DSM 13855]
gi|83755737|gb|ABC43850.1| membrane protein, putative [Salinibacter ruber DSM 13855]
Length = 410
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 121/362 (33%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
R+ K LK + F+ ++ V+ E + + V VP
Sbjct: 50 MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+ P + I + L + +LV + G+S++QL+ P++ +L+ +F
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + ++ K + H +
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHT---VSL 226
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMD 235
+ ++ R DA+ + + +L V + + + S + +
Sbjct: 227 QQLAGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPR 286
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A+ + + ++ +S + R +Y P + + LI ++
Sbjct: 287 DLARSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA 346
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + A G+ F+ ++ + + G +G L P A +P + +++L+L
Sbjct: 347 -STRRRGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405
Query: 356 LQ 357
Sbjct: 406 WW 407
>gi|82546485|ref|YP_410432.1| hypothetical protein SBO_4178 [Shigella boydii Sb227]
gi|81247896|gb|ABB68604.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 361
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 124 WVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|260886292|ref|ZP_05897555.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|330839725|ref|YP_004414305.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
gi|260864011|gb|EEX78511.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|329747489|gb|AEC00846.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
Length = 363
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 131/356 (36%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y F+ + + G + Q S + +P I
Sbjct: 5 LLDKYIFREVCLAFFFGICGTSAVFVGSGTLFRIAQYITEYGASFGSVVKMFIFSLPAIA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ ++ G+S +++ P +V +++ IF++L I
Sbjct: 65 IYTFPMSMLLAALLTFGRLSSSSEITAMKSCGVSFYRIAAPVIVLGVVVSIFSILFTEHI 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++I KS ++ + + + + ++
Sbjct: 125 VPRANNAYENVIAYEIQGNAAPKSQDHIVIKEIKDGEMQRLMYARRYDAATETLEGVTLQ 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
++ + + +DA A + + + Y+ + + L I +
Sbjct: 185 SFEQGETKYVQDAAYAKWEGTQWTMYRGAIYEVSGGKSEHTMRFDKQVLPINAGPGRIVR 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ + E+ +++ ++ + ET+ Y I IP+ + +I + ++ +
Sbjct: 245 EQKKPEELTMKELRQQIE-LMRTQFVDTKKLETELYQRITIPMASLVFAIIGVPLGIQPT 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS+ + + F Y ++T+ + G+SG L P A +P + + + ++
Sbjct: 304 RSSS-SRGIGLSLLIFFCYYVLMTLAGALGQSGALNPAYAVWLPNVAGLLIGAYLM 358
>gi|113474402|ref|YP_720463.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
gi|110165450|gb|ABG49990.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
Length = 392
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/373 (12%), Positives = 120/373 (32%), Gaps = 17/373 (4%)
Query: 2 PGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
P I + RY + L+ + L + + IS + ++
Sbjct: 17 PKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKM 76
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I P ++ ++V+ ++ SE+V R+ GISI++++ P ++ S+ + + +
Sbjct: 77 PEFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFAL 136
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS--------------NPQQDIFIG 165
I S ++++ + + + +
Sbjct: 137 NEIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKF 196
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
K + I + + ++ I + V R + +
Sbjct: 197 DGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIYLVSPDGSYRNIVKFDH 256
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-RAETQFYFLIVIPLML 284
L + + + + + + S + + + + + +P +
Sbjct: 257 KKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVC 316
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ M L+ A++ + R + F Y + I + G+ IL P A +P
Sbjct: 317 LVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPN 376
Query: 345 ILTISLSILILLQ 357
L + +++ +L +
Sbjct: 377 FLGLGVAVFLLAR 389
>gi|293390145|ref|ZP_06634479.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950679|gb|EFE00798.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 355
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 132/360 (36%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 1 MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 60 DVETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G W + N + + D
Sbjct: 120 WGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRRITDDVE-----LNDIYI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
T +++ ++ K A+ A + K L++ E + I + + D
Sbjct: 175 YTFNEQRQLEKLKHANRATFNSGKWTLQQAKESRIQPENIQTTNRLNEEWQTNLTPDKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + ++F ++ E ++ + P+ + M ++A S
Sbjct: 235 VASLRPTSLSISGLSNYITFLRETGQDSKN-FELTYWRKLFQPISVGVMMMLALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 294 LRSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARR 353
>gi|304392006|ref|ZP_07373948.1| permease [Ahrensia sp. R2A130]
gi|303296235|gb|EFL90593.1| permease [Ahrensia sp. R2A130]
Length = 372
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 87/373 (23%), Positives = 165/373 (44%), Gaps = 13/373 (3%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L Y K +L+ T++ L L+ ++D+ E+ + + + + R
Sbjct: 1 MIGQTLSVYLAKNFLRNTMFVFLVFFFLIALVDMLELSRRTARIDDVGFFDVVSIVMLRA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P++ + I+PF L LN+ ELV++RA G+S+WQ L P + ++G+ L+
Sbjct: 61 PVLSENIVPFAVLFGASASLLLLNKRLELVVARASGVSVWQFLAPICAAAAVVGLVMGLI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDI--IPWMQISNPQQDIFIGAKKILPENHIWE 177
NP++ + + L SD W +I+ P D+ + A
Sbjct: 121 YNPLSLRLQASSLSLEGVVFAKNTGVTSDTTWNFWTRIARPDGDMVLRAAVAAERGKKLS 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY---------NDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ DK K R DA A ++ L++ G P +
Sbjct: 181 GVSLYLFDKDGKPEQRIDAASANFAEAVPGTDSLPNRYVLERANILTVGEKPKVVPVMVV 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ I + + SF+++ + + ++ +T+++ ++ +PL+ VAM
Sbjct: 241 PVSITAELLEIRQTSAERVSFWDLDDQAELAERAGRPPEP-FQTRWHSVLALPLLFVAMV 299
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +VSL F+R + G+ +GF+LY + ++ +FG +G++ PV AA P +
Sbjct: 300 LLAGTVSLTFARFGINGKRILTGVVAGFVLYVLTKLVVTFGSNGLVSPVIAAWSPATVGS 359
Query: 349 SLSILILLQKEDG 361
++I +LL +EDG
Sbjct: 360 LIAITVLLHQEDG 372
>gi|301170458|emb|CBW30065.1| conserved inner membrane protein [Haemophilus influenzae 10810]
Length = 358
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKEEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|330962174|gb|EGH62434.1| hypothetical protein PMA4326_26817 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 353
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 122/360 (33%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLPDALSYVMMTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ +L +SEL I RA G+SI +++ + +LL I VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + GD Q + W + I + N + T
Sbjct: 118 EYVAPYAENKAQAARSLAQGLGDAQSAKHGLWHRQGEEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + + ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEAHFKTDYWELKDVTTTHFNDGRTEVINTPDERWDVSLSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L+L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAGVCALAGVLLLRR 351
>gi|74314741|ref|YP_313160.1| hypothetical protein SSON_4447 [Shigella sonnei Ss046]
gi|73858218|gb|AAZ90925.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 361
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ GE++ + Q G + W + N I F
Sbjct: 124 WVASQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 184 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 244 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 303 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360
>gi|261345121|ref|ZP_05972765.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
4541]
gi|282566809|gb|EFB72344.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
4541]
Length = 358
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 137/359 (38%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILMALFLLVSLSGIIKFVEQLRKVGD-GDYTAMSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ +++ L SELV+ +A G + Q+ + +I L I +L+
Sbjct: 60 KDIDIFFPMAALLGSLLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +G++ + + +D W + ++ I ++ F
Sbjct: 120 EWVAPAGDQWARNYRAEKIVGNSLVATDSGMWAKDAHDFIYIQSIKDANNIQDVSIYRFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K R D ++ + ++ Q + + + +
Sbjct: 180 DQRKLKSVMFAARGTYDANKKLWVLSQVDESILSSQQKITGSQRLTYEWQTNLTPEKLGI 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S S S + + +++ +S + + + I+ PL M L+A S
Sbjct: 240 VSLHADSLSIRGLYQYITYLKESGQLASV-YQLSMWQKILAPLSAAVMMLMAVSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V GI GF+ Y + ++ + PV AA +P +L + +SI +L+++
Sbjct: 299 RTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVIAAALPSVLFLGVSIFLLVKR 357
>gi|110596903|ref|ZP_01385193.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
gi|110341590|gb|EAT60050.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
Length = 359
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 130/360 (36%), Gaps = 7/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F+ + K ++ + L +I + E + M N SI + +P
Sbjct: 1 MKILDRYIFRQFAKAFIFTSTTFVFLFILITMVEHLDDMMGR-NLSIFQIIGYYLLSIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P +L+ +I+V L+ +SEL R+ G+S+ QLL PF+ G+ + ++
Sbjct: 60 TVLVTAPVSSLLASILVAGRLSASSELSAIRSAGVSMRQLLYPFLAGASFIAAVNLVNSC 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + ++ + + I + + IG+
Sbjct: 120 WIAPAAFSGIARFEREHLSKEPGKLPENRNMHLIEQGNRIVSIGSMGSDESTGKAVSIEE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ I + + L+ + + + + I
Sbjct: 180 FSGAHLVSRIDAASMSY-NPKSGEWMLENAAIRSFTGGSEQYSFIGRKPVKLSISPRSLL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+F+ Q + + ++ ++ I R+ +FY + +P + + LI +S +
Sbjct: 239 EFNLQPDEMNVSRHYRYLTEKRQAGISGLDRSAVKFYTKLSLPFASLIVMLIGVPLSAKK 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +F GF+ + + G G + P AA +P I+ + + ++ +
Sbjct: 299 KR-GGLASEITIALFFGFLFIGLQKTVAIAGYQGAMNPALAAWLPNIIFLIVG-YLIYKT 356
>gi|148827126|ref|YP_001291879.1| permease [Haemophilus influenzae PittGG]
gi|148718368|gb|ABQ99495.1| predicted permease [Haemophilus influenzae PittGG]
Length = 358
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|68250306|ref|YP_249418.1| permease [Haemophilus influenzae 86-028NP]
gi|145633638|ref|ZP_01789365.1| predicted permease [Haemophilus influenzae 3655]
gi|148825754|ref|YP_001290507.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229847324|ref|ZP_04467426.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
gi|68058505|gb|AAX88758.1| predicted permease [Haemophilus influenzae 86-028NP]
gi|144985515|gb|EDJ92331.1| predicted permease [Haemophilus influenzae 3655]
gi|148715914|gb|ABQ98124.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229809749|gb|EEP45473.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
Length = 358
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 130/360 (36%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|215489604|ref|YP_002332035.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|215267676|emb|CAS12134.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 360
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMQVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + N I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSIRGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359
>gi|315634607|ref|ZP_07889891.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
33393]
gi|315476555|gb|EFU67303.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
33393]
Length = 355
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 138/360 (38%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K L T L + L +I E +G+ Y I + +P
Sbjct: 1 MNTLERYIGKSILGTIFATLFMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ NL SELV+ ++ G S ++ + +I L + T+++
Sbjct: 60 DVETFFPMAALLGALIALGNLASRSELVVMQSSGFSRIRIGIAVMKTTIPLVLLTMVIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G W + N + + + ++ D
Sbjct: 120 WGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYV-----RSISDDVELNDIYI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
T +++ ++ K A+ A N K L++V E + I++ + + D
Sbjct: 175 YTFNEQRQLEKMKHANQASFNNGKWTLRQVNESRIQPDEVVTINRLNEDWETNLTPDKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + ++F ++ E ++ ++ P+ + M ++A S
Sbjct: 235 VASLRPTSLSISGLSNYIAFLKETGQDSRN-FELTYWRKLLQPVSVGVMMMLALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 294 LRSVTAGARILIGISFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLLITWWLLARR 353
>gi|294507117|ref|YP_003571175.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
gi|294343446|emb|CBH24224.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
Length = 410
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 121/362 (33%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
R+ K LK + F+ ++ V+ E + + V VP
Sbjct: 50 MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+ P + I + L + +LV + G+S++QL+ P++ +L+ +F
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + ++ K + H +
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHT---VSL 226
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMD 235
+ ++ R DA+ + + +L V + + + S + +
Sbjct: 227 QQLAGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPR 286
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A+ + + ++ +S + R +Y P + + LI ++
Sbjct: 287 DLARSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA 346
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + A G+ F+ ++ + + G +G L P A +P + +++L+L
Sbjct: 347 -STRRRGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405
Query: 356 LQ 357
Sbjct: 406 WW 407
>gi|170767103|ref|ZP_02901556.1| putative permease [Escherichia albertii TW07627]
gi|170124541|gb|EDS93472.1| putative permease [Escherichia albertii TW07627]
Length = 360
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMMLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA GE++ + Q G + W + N I F
Sbjct: 123 WIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNE 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 NRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISLWLLMRK 359
>gi|315125734|ref|YP_004067737.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
gi|315014248|gb|ADT67586.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
Length = 355
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 131/361 (36%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y + L+TT + L+ + + +I E +G +Y I + +P
Sbjct: 1 MMKTLDWYLGRSILQTTGFALMVLVGISTLIKFIEQLKSVG-RGSYDIMTAMLYTIYSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ + L SELV+ +A G+S Q++ + +I + + + +
Sbjct: 60 DDLVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMALCVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + + ++ Q GD + W + +N +I + + +N +
Sbjct: 120 EWGAPAAQLHAKEMRNQAIHGGDVFNAQKGVWAKDANNFINI-----EDVDQNGMLRGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF 237
DK + A A+ + L+ V + I + + +
Sbjct: 175 MYHFDKSLSLTQITKAKEAVGRDSGWLLRDVNKVMISEELITTEQVSEEFYPSQLTAEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S SF + +++ + N + + ++ P+ + M L+A S
Sbjct: 235 GVVSVKPESLSFSGLWSYLAYL-QQNEQDTSTYDLALWRKLMQPVSIAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + G+ +G + + I + + A++P IL + ++ +
Sbjct: 294 PLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSILFTGFAAYLMNK 353
Query: 358 K 358
+
Sbjct: 354 R 354
>gi|255658902|ref|ZP_05404311.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
gi|260848851|gb|EEX68858.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
Length = 364
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 136/359 (37%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ K ++ + + + S+S + +P +I
Sbjct: 5 ILDKYIFREVFKAFIFGICAFSAVFIGSGTLFKIAKYITDYGASLSAVIKVFVFGLPSVI 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ ++ GI +++ P V+ L+ I + +
Sbjct: 65 MWTFPMSMLLATLLTFGRLSSSSEITAMKSCGIGFYRIAAPAVIMGFLVSIGAIAFNEYV 124
Query: 124 ATSGEKIGID-LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + N + + I I + + + A++ + + T
Sbjct: 125 VPWANTAYRNVVYYEIQGNNGMKSQEHIILKDIQDGKIQRLVYARRYDGDTQTLQGVTMQ 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQ 238
++ K+ H ++A+ A DK + + Y + ++ L I
Sbjct: 185 DFNQDGKVSHVENAEYAEYSMDKWIMHNGMLYDISEGQSEHSMRFDTQVLPIKANPKQIV 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +++ + E + Y I +P+ + LI + L+
Sbjct: 245 REQKDPEELTMKELRAQINIMKTQ-YVDTNKLEAELYQRITVPMASLIFALIGVPLGLQP 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F Y ++T+ + +SG + P+ A IP I+ + +++ +
Sbjct: 304 TRNSSSA-GFAMSVIIIFFYYALMTMGNALARSGAVAPIIAVWIPNIVGLIAGFILIRR 361
>gi|319776037|ref|YP_004138525.1| inner membrane protein [Haemophilus influenzae F3047]
gi|329123195|ref|ZP_08251764.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
gi|317450628|emb|CBY86848.1| conserved inner membrane protein [Haemophilus influenzae F3047]
gi|327471540|gb|EGF16984.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
Length = 358
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFSTLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|16273590|ref|NP_439845.1| hypothetical protein HI1703 [Haemophilus influenzae Rd KW20]
gi|260581044|ref|ZP_05848866.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1176473|sp|P45332|LPTG_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092284|gb|EEW76225.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 358
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|330873093|gb|EGH07242.1| hypothetical protein PSYMP_02386 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963183|gb|EGH63443.1| hypothetical protein PSYAC_00745 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 353
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 120/360 (33%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L + LV + + + + Y++ P
Sbjct: 1 MVK-LDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMGDINDT--YTLLDALSYVMMTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + ++ A A D +LK V + + ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A LIP + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351
>gi|15602062|ref|NP_245134.1| hypothetical protein PM0197 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720420|gb|AAK02281.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 356
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 132/361 (36%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MMSTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRSVGK-GTYDIWQAILYTVLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ +A G S ++ + ++ L I T+L+
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQASGFSRLKIGFAVMKTALPLVILTMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N I I D
Sbjct: 120 EWGIPQTEQFARDMRSKAISGGSLLSVKNGIWAKDGNEFIYIKRITDDIA-----LSDVY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVV---EYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ K A+ A K L ++ + +++ + + D
Sbjct: 175 IYRFAENRQLQQVKHANTATYQEGKWILHRLTESAISENEITTVNRVNAEWQTNLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + ++F ++ + E ++ + PL + M ++A S
Sbjct: 235 GIASLRPTSLSISGLSNYITFLRETGQESK-KFELTYWRKLFQPLSVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI GF+ Y + I + P+A AL+P +L + ++ +L +
Sbjct: 294 PLRSVTAGARIVTGICFGFLFYVVNEIFGPLSLVYNVTPLAGALMPSVLFLLITWWLLSR 353
Query: 358 K 358
K
Sbjct: 354 K 354
>gi|309972901|gb|ADO96102.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2846]
Length = 358
Score = 139 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 130/360 (36%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + +G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSSGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|227824355|ref|ZP_03989187.1| permease [Acidaminococcus sp. D21]
gi|226904854|gb|EEH90772.1| permease [Acidaminococcus sp. D21]
Length = 362
Score = 139 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 7/364 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K L+ + + + Q S S L +P
Sbjct: 1 MRILDKYILKQMLQPFAFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLFRLFLCLMPE 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I P L+ +++ L+ SE+ R+ G+S ++ P + ++ +F+V+
Sbjct: 61 VINYTFPMSMLLASLLTMGQLSGNSEITAMRSGGMSFRRIAMPILAAGFVVSLFSVVWAE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +IQQ N K ++ ++ + Q + + E +
Sbjct: 121 KVVPPAKAEYERIIQQEIKNNTKPRTQDHILLKNISKGQLTRLTYARTFDEKAGVMKDIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDG 236
I K +++ + A N ++K + + + L I
Sbjct: 181 IEDWDKGRVVRIQRTPEAKWQNGTWIMEKGTITEITNEEGLTRTMTFDKQVLPITETPKT 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + E+ + + + Y +PL LI + +
Sbjct: 241 ITLDQKDPDEMTIGELKMYIGILE-RQYQPTSKYVMEIYSRFTVPLASFFFALIGVPLGV 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R+ + + + + F+ Y+I+T M G+ G++ P AA +P L ++
Sbjct: 300 QSQRAG-TSMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPFIAAAVPNFLCGCAGAYLIW 358
Query: 357 QKED 360
QK+
Sbjct: 359 QKDH 362
>gi|157960740|ref|YP_001500774.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
gi|157845740|gb|ABV86239.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
Length = 352
Score = 139 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 125/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + T+ LL L +I + +G +Y++ V +P
Sbjct: 1 MKILDLYIARILISTSSLALLVLTGLSGIIKWVDQLRVVG-RGSYTMMDAGVYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S Q+ + +I L I +++
Sbjct: 60 DIELFFPMAVLLGALIGMGMLASNSELVVMQSSGLSRLQITMSAMKTAIPLMILVMMLTE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E ++ + G +S+ W + I + +++ D T
Sbjct: 120 WVAPVAELRAKEIKRTKVSGGSLIESNRGIWAKDGPLFVSIGG-----VVDSNHLRDITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQ 238
+ AD A + +L V + + + +
Sbjct: 175 YEFSDTTDLTSTVHADSAEYRDKYWQLFDVRRTTLKDEQVVLVNLEQDKWISSLTPEKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIEGLLDYLDYLESNNQASE-RYELALWRKLMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L +A +P ++ ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYYIRK 352
>gi|302392908|ref|YP_003828728.1| permease [Acetohalobium arabaticum DSM 5501]
gi|302204985|gb|ADL13663.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
Length = 364
Score = 139 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 129/364 (35%), Gaps = 9/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY L L+ + + D+ + S L +P
Sbjct: 1 MKIIDRYLLTELLSPLLFGIFAFTSIFVGTDILFELADLMIEWGVSAVTAGQLFILSLPE 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I P L+ ++ F L+ SE+V +A G+S +L+ P ++ ++LL T+L
Sbjct: 61 VIVLTFPMSMLLATLLSFGRLSGDSEVVALKAGGVSFIRLIIPVLIVALLLSGLTILANE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKILPENHIWEDF 179
I + ++ K + + + +I + + +
Sbjct: 121 TIVPQSKDAYRRIVWNIKHQEKMPTTQKNLRIAPLDKKTGKIDYIFYAYHFDGSDLTMEE 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKM 234
S+ + K++ +A A +++ + Y + T + +
Sbjct: 181 VSLQDYQNGKLVQVIEAKRARWTDERWQFIDGTIYNVNSKDKVPTMEFETYTVKKLNREP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S E+ + ++ + + +Y IP LI A +
Sbjct: 241 KEISRAQKDPDEMSIEELNRHINLKEEEG-KDVASLKVLYYQRYAIPFSCFIFALIGAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ +RS I + I F+ YT++TI + G++G L P A + I+ + +
Sbjct: 300 GLQPNRSG-ASIGLGLSIVIIFIYYTLMTIGSTLGQTGTLPPAVGAWLQNIIFGLVGTGL 358
Query: 355 LLQK 358
+++
Sbjct: 359 IIKM 362
>gi|120599781|ref|YP_964355.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|146292283|ref|YP_001182707.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|120559874|gb|ABM25801.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|145563973|gb|ABP74908.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|319425583|gb|ADV53657.1| inner membrane component of lipopolysaccharide transporter, LptG
[Shewanella putrefaciens 200]
Length = 352
Score = 139 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 120/359 (33%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T+ LL L +I + +G Y++ + +P
Sbjct: 1 MKILDLYIARVILSTSALCLLVLTGLSGIIKWVDQLRLVG-RGTYTMMDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ + G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQVSGLSRLQITLSAMKTAVPLMLMVMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E+ +L G KS W + + +I + + T
Sbjct: 120 WGAPVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VENITKLNNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ + K+ A+ A+ D +L V + + D
Sbjct: 175 YKFNSELKLTKVVHAERAVFTRDSWRLFDVKRTDLTYDQVTLEHLEEDIWQSSLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + ++ R E ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIQGLLGYLDYLKTNSQ-DPSRYELALGRKLMQPVTVGVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGIAFYFIRR 352
>gi|261867782|ref|YP_003255704.1| permease [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413114|gb|ACX82485.1| conserved permease [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 355
Score = 139 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 66/360 (18%), Positives = 133/360 (36%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 1 MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 60 DVETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G W + N + + D
Sbjct: 120 WGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRRITDDVE-----LNDIYI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
T +++ ++ K A+ A + K L++V E + I + + D
Sbjct: 175 YTFNEQRQLEKLKHANRATFNSGKWTLQQVNESRIQPENIQTTNRLNEEWQTNLTPDKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + ++F ++ E ++ + P+ + M ++A S
Sbjct: 235 VASLRPTSLSISGLSNYITFLRETGQDSKN-FELTYWRKLFQPISVGVMMMLALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 294 LRSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARR 353
>gi|237653448|ref|YP_002889762.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
gi|237624695|gb|ACR01385.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
Length = 358
Score = 139 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 119/362 (32%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + + L+ + L D +G+ Y++ + V +P
Sbjct: 1 MSPVLLRYLAREIFAASALVLVAFLGLFAFFDFINELEDVGK-GGYTLYQALVYVGLTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ + L + SE+ + RA G+S L + + + + LV
Sbjct: 60 ARVYELMPIAVLIGTLYALATLAKNSEITVMRASGMSNALLTSVLGLIGGVFAVLIFLVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + Q+ W++ + + + ++P+ +
Sbjct: 120 EYVAPPAEAAAEEWKLTATQATVSQQLRSGLWVK----DGRLVLNVRTLMPDRSMRGARI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
+ + A + + KL V ++ + + +
Sbjct: 176 YAFDEDYALESIAEAATGVFDGSGEWKLLDVQRTRFHGDRTEIERLPEIRWRSELTPEVL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
F + ++ +N + R E + ++ P + M +A
Sbjct: 236 GVLMVSPEHMPFGRLWTYINHLRDNNQ-NADRFEIALWKKLIYPFTALVMMALAMPFGFI 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + + + + G P AAL P ++ ++ + ++ +
Sbjct: 295 HDRMGGASARIFMGVMLGVGFHLLNGLFSNLGMINAWPPFMAALTPSLIFLAAAFWLMHR 354
Query: 358 KE 359
E
Sbjct: 355 VE 356
>gi|260582801|ref|ZP_05850587.1| permease [Haemophilus influenzae NT127]
gi|260094127|gb|EEW78029.1| permease [Haemophilus influenzae NT127]
Length = 358
Score = 139 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 2/360 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + + ++ F
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K K ++ ++ + I + S T + D
Sbjct: 180 QQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + +SF ++ R E F+ I P+ + M L+A S R
Sbjct: 240 SLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI GF+ Y + I+ + + ALIP +L I + +L +K D
Sbjct: 299 SVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKRD 358
>gi|170718033|ref|YP_001785073.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
gi|168826162|gb|ACA31533.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
Length = 356
Score = 139 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 134/360 (37%), Gaps = 4/360 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGTILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + I++G + ++
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWAKDG--NDFIYVGRITNDISLNDIYIYS 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ H A + + + I++ + + D
Sbjct: 178 FDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLTPDKLGIA 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + + F ++ R E F+ + P+ + M L+A S R
Sbjct: 238 SLRPTSLSMTGLYNYIKFMKETGQ-DAKRFELTFWQKVFQPVSVAVMMLLALSFIFGSLR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GIF GF+ Y I I+ + V AALIP +L + L +L +K +
Sbjct: 297 SVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWLLNRKRE 356
>gi|193212079|ref|YP_001998032.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
gi|193085556|gb|ACF10832.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
Length = 383
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 124/345 (35%), Gaps = 9/345 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +L + L L +I+L E ++ + + + + +P
Sbjct: 28 IIDRYIIRQFLTIFFFSLASFAALFIIINLIENLDRFMSRQ-IPVGQIIIYYLSGLPDTF 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ V L+ SEL +A G+S+ +L+ PF++ + + F ++ I
Sbjct: 87 LLTSPLSVLLASLFVTGKLSMQSELPALKAAGMSLSRLMKPFLLATFFITAFNLVNSCFI 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + +Q+ + + + N + + + + +
Sbjct: 147 TPAMYDLSKGYEKRYLKSQKEQQEEAVHIRESKNRILTVGQINRDRQSAVSVSLETFDGS 206
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQK 239
D+ + + + TL + + + F
Sbjct: 207 RLASRLD---ADSLRISSNGRHWVFYNTKQRTFVNGRETLVANPGADTLKLALAKNTFTM 263
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++ +S + RAE + I +PL + + LI +S
Sbjct: 264 IDADPDEMNLVQHLAFIAQKKRSGLPGLERAEVELQTKIALPLASMLIVLIGVPLSTRKK 323
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
RS + A + G ++ + S G G++ PV AA +P
Sbjct: 324 RSG-LALEAATSLLIGLFYLGMLKTIGSLGYDGLINPVLAAWLPN 367
>gi|253997572|ref|YP_003049636.1| permease [Methylotenera mobilis JLW8]
gi|253984251|gb|ACT49109.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
Length = 356
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 128/361 (35%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY FK L L + + DL + +G +Y +S+ + A P
Sbjct: 1 MKIITRYLFKEITVNVLLITLALIAMFSFFDLIQELESLGH-GSYGLSKILLFVALSAPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P LV + L R SEL++ R GIS++ L + +L + T L+
Sbjct: 60 HVYEVMPVAVLVGCMYSLGQLARYSELIVLRVSGISLYSLAATLIKIGMLFTVITFLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I EK+ + + D+ Q W++ + ++ + + +
Sbjct: 120 LITPLSEKMAQRIRIKATDSVIVQDFKSGLWVKDGHSFVNVEE-----VLADTTLLNIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQ 238
D K + A + +++ LK V + + + T I+ +
Sbjct: 175 YEFDDKFNLRTVSHAHKGLYEDEQWHLKSVSQTHLDKDSNHVEHLDKATWRSLIRPELLN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + +N R + + +V PL + M ++A +
Sbjct: 235 VLLVLPEKMSAWNLYAYIDHL-AANKQKTTRYKMALWAKLVYPLASLVMVILALPFAFIQ 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + GI G + T+ G P +A+ P L + + +L
Sbjct: 294 QRATGASTKIFIGIMLGILYQTLNQTFVHLGLLNDWAPAFSAITPTALFLLGGLAMLHHI 353
Query: 359 E 359
+
Sbjct: 354 D 354
>gi|119471262|ref|ZP_01613765.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
gi|119445728|gb|EAW27011.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
Length = 354
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 125/360 (34%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y + L+TT + LL + + +I E +G +Y + + +P
Sbjct: 1 MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKSVG-RGSYDLITAMLYTLYSIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ + L SELV+ +A G+S Q++ + ++ + I + +
Sbjct: 60 DLVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAMFMAICMMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + ++ Q GD + W + N +I + + E+
Sbjct: 120 WGAPEAQLRAKEMRNQAIHGGDVFSAQKGVWAKDGNNFINI-----EDVDESGKLNGLHM 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
D ++ A AI D L+ V + I + +
Sbjct: 175 YYFDSSLELTQITKAKEAISRKDGWLLRDVNKVIITDELITTELHPEEFYPSQLTAEKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S SF + +S+ N + + + P+ + M L+A S
Sbjct: 235 VVSVKPESLSFTGLWSYLSYLE-QNEQDTSTYDLALWRKFMQPVSVAVMLLVALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + G+ +G + + I + + A++P ++ I + ++ ++
Sbjct: 294 LRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSVIFIGFATYLMNKR 353
>gi|170725440|ref|YP_001759466.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
gi|169810787|gb|ACA85371.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
Length = 352
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 124/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + T+ LL L +I + +G +Y++ + +P
Sbjct: 1 MRILDFYIARTLVSTSALCLLILTGLSGIIKWVDQLRVVG-RGSYTMLDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S Q+ + ++ L + + +
Sbjct: 60 DIEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITLSAMKTAVPLMLIIMALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + E+ +L G KS W + + +I + + + + T
Sbjct: 120 WGAPAAEQKAYELQATKISGGSLIKSSRGIWAKDGDLFVNIGE-----VEDINNLRNITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
+ + A+ + D +L V + + + D
Sbjct: 175 YKFNSDLALTRTIHAERGVFSKDHWRLLDVRQTDLTDERVTLTDLTLYRWESTLTPDKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S +I + + +N R E + + P+ + M L+A S
Sbjct: 235 VVSVKPESLSIQGLIGYLDYLEVNNQ-DASRYELALWRKFMQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A++P ++ +I + +
Sbjct: 294 LRTVTMGARVLLGVIAGFSFYISSEIFGPLTLVYGLPAYIGAMMPALIFGVGAIYFIRK 352
>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
Length = 785
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/368 (16%), Positives = 119/368 (32%), Gaps = 15/368 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL Y +L+ L + L + E+ + + + +P
Sbjct: 418 PLILDEYVMGSFLRNFGLVLTSLVGLFLIFTFFELIGDIIKYR-TPLVTVGEYLLNLIPF 476
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P +LV ++ F L+RTSEL +A G+S++++ P ++ ++ L
Sbjct: 477 ILYNVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILFAFDE 536
Query: 122 PIATSGEKIGIDLI-------QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + L Q D++ + +
Sbjct: 537 TYLPAANRKQEALRSVIKGKPAQTFLRADRKWMSGQTLGNKEPTRIFYYQFFDSDKNVFA 596
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-----STTLN 229
F + ++ + + + I ++
Sbjct: 597 NLTVFEFQPGTFTLTRRIFATSARWDDSVNRWVFENGWQRTFSGDAISSYQPFTLNSFPE 656
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
I + F+K Q S+ E+ K + +S F R Q I PLM + M +
Sbjct: 657 IHEQPGYFKKEDRQSQEMSYSELSKYIRDLKQSG-FDTTRLRVQLNRKIAYPLMALVMAI 715
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +L + + GI + I I ++ G L + AA P IL
Sbjct: 716 LAVPFALSTGKRGGLA-GMGAGIGVAISYWVIAAIFENLGNVNSLPSILAAWSPDILFAM 774
Query: 350 LSILILLQ 357
+ +LL+
Sbjct: 775 VGTYLLLR 782
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/370 (11%), Positives = 99/370 (26%), Gaps = 12/370 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY + + L + ++F+ L + + S + L +P
Sbjct: 1 MRIFTRYILREVVGYALLGGVLFTFILFMRYLLALME-LAVHGAASFADILRLIGYLLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L+ ++ L SE+ RA G+ + + + ++L ++
Sbjct: 60 FLTLTIPMAVLIGILLGLSRLAADSEITAMRASGMGVLSFVRIVSIVAVLSWAVGLVNSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + Q + + + F +
Sbjct: 120 YVAPRAAAALLQYEAQGASGEAAIQVQPRVFYEDFKNYVLYVQDVVPGSGAAEWKNVFLA 179
Query: 182 ITIDKKNKIIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
I L +++L + ++ + ++
Sbjct: 180 DLTQPATPHIITSQEALVTGTPGDPQTLRMQLSDGSRHDIAGNNPNQYDISTFASTELPI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNK-----SNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
E+ + S + + + + + P + + L+
Sbjct: 240 QTGQQEEDSHISRRDTPIQALSMGELWKFAHGSGDTQPYFIELHRRFSYPAACLVLMLVG 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ L R A + F Y + + + + G L A I+
Sbjct: 300 VPLGLSSKR-GGKGTGFAITLVLVFAYYILSFVGSALARQGKLSAFAGVWGANIIFGVAG 358
Query: 352 ILILLQKEDG 361
+L+L Q G
Sbjct: 359 VLLLQQMSRG 368
>gi|91792233|ref|YP_561884.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
gi|91714235|gb|ABE54161.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
Length = 351
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/357 (17%), Positives = 132/357 (36%), Gaps = 10/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + L T+ LL L +I + +G +Y++ + +P I
Sbjct: 2 ILDLYIARAILATSSLCLLILTGLSGIIKWVDQLRLVG-RGSYTMIDAGIYVLFLIPRDI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L +SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 61 EMFFPMAVLLGALIGMGMLASSSELVVMQASGMSRLQISMSAMKTAVPLMLLVMVLGEWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ +L G KS W + + +I + + + T
Sbjct: 121 APVAERSAKELQATKLSGGSLIKSHRGIWAKDGDLFVNIGE-----VETVNSLNNITLYE 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKF 240
D+ K++ A A ++ +L++V + I ++ + N + D
Sbjct: 176 FDEAMKLVKVIHAQEAQFKDEAWQLQQVKTTVFSDEKITLVEQPLQSWNSSLTPDKLGVV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + + S ++ + + N R + I+ P+ + M L+A S R
Sbjct: 236 SVKPEALSIQGLLDYLDYLEV-NQQDPSRYNLALWRKIMQPVTIAVMMLVALSFVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ V G+ +GF Y I L A+ P +L + ++ + +
Sbjct: 295 TVTMGARVLLGVVAGFGFYISNQIFGPMSIVYELPAAVGAIAPSLLFTTAAVYYIRK 351
>gi|313159015|gb|EFR58390.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
Length = 367
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 54/355 (15%), Positives = 118/355 (33%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +I+V + D E + EL +P
Sbjct: 8 FKILDRYILGKFLATYFFAIAMIIIVVVLFDYVEKIDDFTELHAPLRDVIFDYYLNFIPF 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++G ++ +
Sbjct: 68 FINQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIGSLSLTLNL 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ ++ Q+ K + + QI G +
Sbjct: 128 WLIPISQRHIVNFESQYIKRKQNNKFNRHIYRQIEPGTFAYIRGYNDASQQASFLALEHY 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--GFQK 239
+ + E+ + + L+ I ++ +
Sbjct: 188 YSGTMTRSLEASDVKFNPETKCWTAPRYTKREFDSLGVEKFEQFRNLDTLINLEVTELGE 247
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ + + E+ + + E + + PL +TLI S+S
Sbjct: 248 INDLIQTMNITELNEFLDQQRAKGSDAINIIEVEKHARFAYPLSTFILTLIGVSLSSRKV 307
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G F + F KSG L P A +P I+ + +++ +
Sbjct: 308 R-GGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLFIAVYL 361
>gi|28868484|ref|NP_791103.1| hypothetical protein PSPTO_1273 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968382|ref|ZP_03396526.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301384648|ref|ZP_07233066.1| hypothetical protein PsyrptM_18507 [Pseudomonas syringae pv. tomato
Max13]
gi|302058899|ref|ZP_07250440.1| hypothetical protein PsyrptK_02847 [Pseudomonas syringae pv. tomato
K40]
gi|302133012|ref|ZP_07259002.1| hypothetical protein PsyrptN_16559 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851722|gb|AAO54798.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927020|gb|EEB60571.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331015231|gb|EGH95287.1| hypothetical protein PLA106_04712 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 353
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 120/360 (33%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L + LV + + + + Y++ P
Sbjct: 1 MVK-LDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMADINDT--YTLVDALSYVMMTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWSVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + ++ A A D +LK V + + ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A LIP + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351
>gi|330504704|ref|YP_004381573.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
gi|328918990|gb|AEB59821.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
Length = 354
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 121/356 (33%), Gaps = 10/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + +Y + + P
Sbjct: 4 LDRYIGTQVFFAILAVLGIILGLALLFAFIDELGDL-NKGDYGLGQALWYVLLTAPRRAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 63 EMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEYVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G Q S W + I + + T
Sbjct: 123 PLTENQAQADRALAQGGGAAQSSKRGMWHRQGQEYVHI-----NAVQPGGVLLGVTRYRF 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFS 241
D + +++ A A ++ L V + + +I + +
Sbjct: 178 DDERRLLSASFARRAEYRDNHWMLSNVKTTLLHEDHSEVVNQREERWDIELNPELLGTVV 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + S + + + + ++ +N R F+ ++ PL+ A+ L+A S RS
Sbjct: 238 MEPEALSVTGLWQYIHYLSEQG-LNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPLRS 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V G+ GF+ ++ P+ A L+P + + +L +
Sbjct: 297 VTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352
>gi|298369120|ref|ZP_06980438.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298283123|gb|EFI24610.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 356
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 135/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 1 MKLIPRYIIRQMSVMAVYALLAFLALYSFFEVINEMGDVGK-GSYTGAKMVQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ L SEL + +A G+S +LL ++ + TV++
Sbjct: 60 RAYELMPLGVLIGGLIALSQLASGSELTVIKASGMSTKRLLAVLSQFGLIFALATVVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + ++ + + + +Q+ I +++LP++ +
Sbjct: 120 WVAPDLSRRAENMKASAINGRISAGASG-----LWMKEQNNIINVREMLPDHTLLGVKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
D+ + A+ + +LK V ++S + ++
Sbjct: 175 QHDDRYQLASAAEAESAALNPDGSWQLKNVSRSVLKGEQVAVSSESSQRWPVALQSGLLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S E+ ++ SN ++ ++ P+ M L+A + + +
Sbjct: 235 VLLVDPDQMSVSELTTYIAHLK-SNHQKTDTYSVAWWRKLMYPIAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A ++P ++ L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLVFHFAGRLFGFTSQLYSVPPFLAGMLPTVIFALLAVYLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|152978628|ref|YP_001344257.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
gi|150840351|gb|ABR74322.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
Length = 354
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 11/362 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K L T LL + L +I E +G+ Y + + +P
Sbjct: 1 MNTLERYIGKSILGTIFATLLTLVGLSAIIKFVEQFRSVGK-GTYDSLQAVLYTILTIPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ NL SEL++ ++ G S ++ + +I L + T+++
Sbjct: 60 DVETFFPMAALLGALIALGNLASRSELIVMQSAGFSRLKIGIAVMKTAIPLVLITMVIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G W + N + + +
Sbjct: 120 WGIPQTEQYARDMRAKAISGGSLMSVKNSVWAKDGNDFIFVRQVREDANLRD------VY 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
I ++ A+ A K +L ++ I + + D
Sbjct: 174 IYHFDNRQLQRLSHANSATYERGKWQLHQLNVSDIQAEQIFTKNYVSQEWKTSLTPDKLG 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + ++F +++ + + E ++ + P+ + M ++A S
Sbjct: 234 IVSLRPTSLSISGLSEYIAFLHQTGQ-DSKKFELTYWRKLFQPISVGVMMMLALSFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y I I + P+ AL+P IL + ++ +L +K
Sbjct: 293 LRSVTAGARIVTGICFGFLFYVINEIFGPLSLVYNVTPIVGALMPSILFLVITWWLLSRK 352
Query: 359 ED 360
D
Sbjct: 353 RD 354
>gi|330811513|ref|YP_004355975.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327379621|gb|AEA70971.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 353
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 123/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + + + + Y+++ A P
Sbjct: 1 MVK-LDRYIGSSVFMAILAVLGIILGLATLFAFIDEMSDVSDT--YTLTDVASYVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P L+ ++ +L SEL I RA G+SI +++ + ++L + VL+
Sbjct: 58 RRLYDMLPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGVLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA + E + GD Q + W + + I + N I T
Sbjct: 118 EYIAPATENTAQANRSLAQGGGDAQSAKHGLWHRQGDEFIHI-----NSVQPNGILYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + ++ A A D +L V + + ++ I
Sbjct: 173 RYRFDDQRHMLSSSFAKRANFAEDHWQLSDVTTTLFHDKRTEVVAAPQERWDVSISPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 STVVMAPESLSITGLWGYIHYLADQG-LNNGRYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICALAGLWLLRR 351
>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 353
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/357 (17%), Positives = 129/357 (36%), Gaps = 9/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + K L L +++ +D E + + R+P
Sbjct: 1 MKIISKYIARALFKNLLTILFAVVVIYVAVDFFEKIDDFM-AAKIPLLTVGYFFLLRIPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q++P L+ +VV + R +E++ + G S + LL P V ++ +F
Sbjct: 60 VAAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLFAFNE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + Q + + + + K +PE H D T
Sbjct: 120 IIVPAAAAEANQIWYQDVRKEGDVGTRTTWF-----HRNGLIGRVDKYIPETHTARDITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQK 239
D K+I R DAD A I L+ +E GR + L + + D
Sbjct: 175 NYYDPSFKLIKRIDADDATISGTVWTLRNAMESVSGRASDIRQHKELKVEMDFTADQLHD 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ S ++ + + + R I PL+ + M+++ +++L
Sbjct: 235 RVKRSDEMSLVQLKEHIHKIESEG-YKAVRFRVDLASKISFPLVCLIMSVLGGAMALRGK 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + G+ F + + ++ S G +G+ P+ +A + L+ + +
Sbjct: 294 RGEGLAVNIVMGMGLAFAYWVVHSLCLSLGYAGMYSPIFSAWTANAVFAVLAAVFIY 350
>gi|223936058|ref|ZP_03627972.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
gi|223895280|gb|EEF61727.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
Length = 372
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/372 (16%), Positives = 119/372 (31%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L Y L G +I DL +Q E + VP
Sbjct: 1 MRLLDRYLLRELLIPLRYCLGGFLIFWISFDLINSIHQFQEAK-LHLFDVVQYYLITVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ + N R E+ RA GIS+W++ P+V ++ +
Sbjct: 60 FLVIVLPMALLLALLYTLSNHARHHEITAIRAAGISLWRICIPYVAVGLVFSAAVFAINE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ D++ ++K N + + +D
Sbjct: 120 YWIPDSDQKAQDILDKYKPNRPDGSNKDVYRNFGIPNGRDKRTWDIGSYNLKTEIMTDPK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD------ 235
++ N + HR A+ A ND V E++ + N+ +
Sbjct: 180 VSWIDTNNLPHRLIAERAERTNDVWTFYNVTEFETMPDGFMGPTMKTNVVAHPEFSETPD 239
Query: 236 ----------GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ + A +I+ + + + TQ + + P +
Sbjct: 240 QIRREIKFSKRLTSHNAKAAEVPIVDILDYLDLHPVLTKKNKWWLYTQLHGRLAAPWTCL 299
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ +A R + VA I F Y ++ + + G G + A +P
Sbjct: 300 VVVFLAIPFGAASGRR-NIFVGVASSIVIVFAYYVLLKLGLALGTGGYVPAWVAGWLPDF 358
Query: 346 LTISLSILILLQ 357
+ + I +LL+
Sbjct: 359 VFGAAGIWMLLR 370
>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
Length = 368
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 86/364 (23%), Positives = 155/364 (42%), Gaps = 8/364 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y F + L L + + ++D+ E +G S+ L A + P +I
Sbjct: 6 IQTYIFWECVAGLLMTLGIILGAILLVDMVEQLRTVGARTELSLLGAFQLTALKAPQLIL 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +PF LV +++ + LNR+SEL RA G+S W+ L P + LG + +I+P+A
Sbjct: 66 ETMPFAILVGSMLAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGCIAMTIIDPLA 125
Query: 125 TSGEKIGIDLIQQWKDN----GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
T D+ D K W++ I + + +N ++
Sbjct: 126 TFSNAKYETEKTLLLDDTGAVKDSAKRQKKVWLRQGTDTTQSVIHGEVLPNDNSSLQNVE 185
Query: 181 SITIDKK---NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++K + R DA A + +L+ V EY PI ++ L +
Sbjct: 186 IFILEKDGDEFEFQRRIDAKKATLRPGFWQLEGVTEYSSDNEPIKQDYLALTTTLDPSTI 245
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S SF+++ + + + ++ + + + L+ +P++L AM LI A V L
Sbjct: 246 LDRGTDEKSISFWKLPQLIQDARRAG-LDADKYILKLHTLLAMPVLLGAMALIGAVVCLR 304
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS ++A GI +GF+L+ + + K SG P AAA P ++ + + I+
Sbjct: 305 LRRSGGVTQLLAAGIGAGFLLFFVNQVSKGLASSGATPPQAAAWAPALIALFSVLSIIAF 364
Query: 358 KEDG 361
EDG
Sbjct: 365 AEDG 368
>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
Length = 359
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 131/358 (36%), Gaps = 10/358 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY LK + +++ +D E + +SR AV ++PLI+
Sbjct: 3 ILSRYIIAEILKALAVVMAVVIVIYVAVDFFEKIDDFLG-AGVPLSRMAVFFLFKIPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P L+ ++VVF +NR +E+ ++ GI L P V + + ++V +
Sbjct: 62 VQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAVVGVGCCVLLLIVSEIV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ Q I + + P D
Sbjct: 122 VPRTISRANYIWLQQVRQKTSSVDQKNN---IWLKDDRTIVHIRHYQPREKKAFDVVLHD 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
+D+ ++ R DA + + L+ V++ Q+ ++ + + + + +
Sbjct: 179 LDEGFRVTRRIDAARGLYDGGQWTLRNVLDQQFDVAGNVQLVEFRERLKIELDLLPEDLD 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +E F +++ ++ + + + + P + + M LI A++ +
Sbjct: 239 RAAESADEMGFVQLLDRIRQVERQG-YSVVSHRVDLHAKLSFPFVCLLMGLIGAALGIMG 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
AYG+ + F+ + + S G G+L P+ AA ++ + ++L
Sbjct: 298 RTRGGITANAAYGVGASFVYWIFHSFCISLGYGGMLPPLIAAWSANLVFGGATAAVIL 355
>gi|113460663|ref|YP_718729.1| permease [Haemophilus somnus 129PT]
gi|112822706|gb|ABI24795.1| conserved permease [Haemophilus somnus 129PT]
Length = 356
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 69/360 (19%), Positives = 134/360 (37%), Gaps = 4/360 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGAILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + S I++G + ++
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWARDS--NDFIYVGRITNDIRLNDIYIYS 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ H A + + + I++ + + D
Sbjct: 178 FDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLTPDKLGIA 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S S + + F ++ R E F+ + P+ + M ++A S R
Sbjct: 238 SLRPTSLSMTGLYNYIKFMKETGQ-DAKRFELTFWQKVFQPVSVAVMMMLALSFIFGSLR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GIF GF+ Y I I+ + V AALIP +L + L +L +K +
Sbjct: 297 SVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWLLNRKRE 356
>gi|156935579|ref|YP_001439495.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
gi|156533833|gb|ABU78659.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
Length = 360
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 69/356 (19%), Positives = 126/356 (35%), Gaps = 3/356 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + T + L + L +I + + GE +Y+ VP I
Sbjct: 6 VLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGE-GSYTALGAGTYTLLSVPKDI 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P L+ ++ L + SELV+ +A G + Q+ + +I L IFT+ + +
Sbjct: 65 QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A GE++ +L Q G + W + N I + F
Sbjct: 125 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGNNFVYIERVKGENELGGISIYAFNDKR 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSE 242
+ + D ++ + +I + T T + D +
Sbjct: 185 RLESVRYAANAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVAL 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + + + S R + + I PL + M L+A S RS
Sbjct: 245 DPDALSISGLRNYVKYLKASGQ-DASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V GI GF+ Y + I + P+ AL+P +S+ +L+++
Sbjct: 304 PMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKR 359
>gi|83945295|ref|ZP_00957644.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
gi|83851465|gb|EAP89321.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
Length = 367
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 8/368 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G LWRY F L + + ++ +ID E +G S + L+ + P
Sbjct: 1 MIGRLWRYLFIQTLIGLIGAAVIITAVILLIDFVETSRDIGTRVGISAFQALHLSLLKAP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++Q +PFI L + FF LNR SEL++ RA G S W++L P + + L G + L +
Sbjct: 61 LLVQDTLPFIVLFGVLFTFFRLNRRSELIVMRASGYSAWRILAPVAILAALTGAISTLAL 120
Query: 121 NPIATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP+ + + + + W++ + I I A++ ++
Sbjct: 121 NPLGAASNARFEATREALFEGEGQSSGANQSGPIWLRETTATGYIMITAQQQGGDDATLT 180
Query: 178 DFTSITIDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + R A+ A + L +EY G + L +
Sbjct: 181 EPVFRQYVLSESGAPLLDRRITAERAELNGGFWSLTNAIEYAPGGQATELGDVALPTNVG 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + SF+++ ++ + + + E +++ L+ PLMLVA L+ +
Sbjct: 241 RQALFERARSPGAVSFWQLPAVIASARDAG-LSSLAYELRWHGLLAQPLMLVAAALMGIA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+L R A G +GF+LY +M G SG + P+ AA L +
Sbjct: 300 ATLRLHRLGGAAGFAAAGATAGFILYFSQELMLGLGASGAITPLTAAWTTPALFSLAGLF 359
Query: 354 ILLQKEDG 361
+ EDG
Sbjct: 360 FIAATEDG 367
>gi|262045293|ref|ZP_06018318.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037349|gb|EEW38595.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 360
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 3/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKK-SGQGSYDALGSGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQAFGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + I F
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + ++ + S T + D
Sbjct: 183 ERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I PL + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + V GI GF+ Y + I + P+ AL+P +S+ ++++K
Sbjct: 302 SVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359
>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 777
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 124/367 (33%), Gaps = 11/367 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P ++ Y ++ + L + L + + E+ N M N S+ P
Sbjct: 411 LPQLVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDML-RNNISLKIMFKYLFFLSP 469
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I Q++P LV + F +++ +E+ +A G+S+++L P +VGS+LL
Sbjct: 470 QLIYQMLPVSILVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFD 529
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +I L Q K + W + + E +
Sbjct: 530 FYYVANANRIQDALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEA 589
Query: 180 TSITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP-----IDKNSTTLNIP 231
+ ++ K + R+ +N + +Y + +T +
Sbjct: 590 SVFELEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARFQATTFRELT 649
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
D F K + + +F ++ + +S + + +FY +PL + M LIA
Sbjct: 650 EPPDYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIA 709
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ I + + + G +L P AA P ++
Sbjct: 710 VPFGFLVGSRGAMT-GIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAG 768
Query: 352 ILILLQK 358
+ L+
Sbjct: 769 TYLFLRM 775
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 43/369 (11%), Positives = 110/369 (29%), Gaps = 11/369 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY F+ L + + L A ++F+ ++ I + + + + + L A +P
Sbjct: 1 MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPN 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IPF LV ++ L E++ RA G+S +++ P ++ + L G
Sbjct: 61 VLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATL 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-----------QQDIFIGAKKIL 170
+ D++ Q + +++ ++
Sbjct: 121 RLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVAD 180
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
I + A + + Y + D +S
Sbjct: 181 VAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + + + + + + +P+ + + ++
Sbjct: 241 PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMV 300
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + + V + F Y + + L A +P + +
Sbjct: 301 GIPLGIATRKGGRSAGYVNAIFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVV 360
Query: 351 SILILLQKE 359
++ L + E
Sbjct: 361 GVIFLARLE 369
>gi|292669943|ref|ZP_06603369.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648414|gb|EFF66386.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 366
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 51/359 (14%), Positives = 129/359 (35%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 7 ILDKYIFREVFSSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI ++ P ++ ++ + + +
Sbjct: 67 MWTFPMAMLLASLLTFGRLSSASEITAMKSCGIGFGRIAAPAILLGFIVSVGAIFFNEHV 126
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
++I + KS ++ Q + A+ E +
Sbjct: 127 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEEGQIRRLVYARSYDAEQERLTGISLQ 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQ 238
K+ H ++A+ A + + Y + + L +
Sbjct: 187 VFGDDGKVTHVENAEYAEWTGTEWIMHNGDVYDIADEHLERRMRFETQVLPVQKDPRQII 246
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +++ ++ + + E + Y + +P+ + TLI + L+
Sbjct: 247 REQKVPEEMTMRELRHQIA-LMQTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLGLQP 305
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F Y ++T+ +F + +L P+ A IP I+ I ++L +
Sbjct: 306 TRNSSSA-GFAMSVIIIFFYYALMTMGNAFARGEVLPPMLAVWIPNIVGIIAGTILLRR 363
>gi|251792101|ref|YP_003006821.1| permease [Aggregatibacter aphrophilus NJ8700]
gi|247533488|gb|ACS96734.1| conserved permease [Aggregatibacter aphrophilus NJ8700]
Length = 355
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 136/360 (37%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 1 MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDIWQAIAYTVLTMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ NL SELV+ ++ G S ++ + +I L + T+++
Sbjct: 60 DVETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGLAVMKTTIPLVLLTMIIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G W + N + + + D
Sbjct: 120 WGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRNISDDVE-----LRDIYI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
T +++ ++ K A+ A + K LK+V E +++ + + D
Sbjct: 175 YTFNEQRRLEKLKHANHAAFNDGKWMLKQVNESTIQPDSVNTVNRLNEEWQTNLTPDKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + ++F ++ E ++ + P+ + M ++A S
Sbjct: 235 VASLRPTSLSISGLSSYITFLKETGQDSKN-FELTYWRKLFQPISVGVMMMLALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L ++++ +L +K
Sbjct: 294 LRSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSMLFLAITWWLLARK 353
>gi|238897462|ref|YP_002923139.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465217|gb|ACQ66991.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 367
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/356 (18%), Positives = 126/356 (35%), Gaps = 3/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY + L T + L + L +I E ++GE NYS+ A+ VP
Sbjct: 3 FGILDRYIGRSILNTIIMTLFMLVSLSGIIKFIEQLRKVGE-GNYSVFAAAIYTLLSVPN 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P L+ I+ L SELV+ +A G S Q++ + +I+L + ++++
Sbjct: 62 DIMIFFPMAALIGGILGLGALATRSELVVVQASGFSHMQIVLSVMKTAIILFLLSIIIGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ + G + W + + I F +
Sbjct: 122 WLAPLADQTASHYRTKMIYGGSVISTQSGIWAKDKSDFIYINQVINHHELSGVHIYHFDA 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + + S + +
Sbjct: 182 HDRLISIRYAATAIFEKGAWQLSQIDESNLSDTKKIQGSQTL-SEKWETSLTPYKLGIVA 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S + + + + + R E + + I P + M L++ S RS
Sbjct: 241 MDPDSLSIMGLYDYVKYLKQVGQ-DSDRYELKMWQKIFSPFSITVMILLSLSFIFGPLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + GI GF+ Y + I P+ A +P +L S+S+ +LL+
Sbjct: 300 TATGLRIVTGICFGFVFYLLDKIFGPLSLLYQFSPILGAALPSVLFFSISLYLLLK 355
>gi|146308540|ref|YP_001189005.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
gi|145576741|gb|ABP86273.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
Length = 354
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/356 (16%), Positives = 119/356 (33%), Gaps = 10/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + + +Y + + P
Sbjct: 4 LDRYIGAQVFFAILTVLGIILGLALLFAFIDELSDL-NKGDYGLGQALWYVLLTAPRRAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 63 EMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEYVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G Q S W + I + + T
Sbjct: 123 PLTENQAQADRALAQGGGAAQSSKRGMWHRQGQEYVHI-----NAVQPGGLLLGVTRYRF 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFS 241
D + ++ A A D L+ V + + +I +
Sbjct: 178 DDERRLQSASFARRAEHRGDHWVLRNVQTTFLHDNRSEVVNQREERWDIELSPQLLSTVV 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + + + + + +N R F+ ++ PL+ A+ L+A S RS
Sbjct: 238 MEPESLSITGLWQYIHYLAEQG-LNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPLRS 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V G+ GF+ ++ P+ A L+P + + +L +
Sbjct: 297 VTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352
>gi|218679276|ref|ZP_03527173.1| permease YjgP/YjgQ family protein [Rhizobium etli CIAT 894]
Length = 312
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 2/311 (0%)
Query: 52 AVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL 111
++ A R+PLI+QQ +PFI L V + V LNR ELV++RA GIS+WQ ++PF+ GS+L
Sbjct: 3 ILMTAVRLPLILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMSPFIAGSLL 62
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKIL 170
LGI T+ +NP+A G++ + + W+ + IPW++ + + D+ IGA +
Sbjct: 63 LGILTMTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQ 122
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
D I D ++I R+DA A + + +L VVE + G IP+ K S L
Sbjct: 123 ENGTKLIDAVLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLRT 182
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+K D Q+ + F+++ +++ + I ETQF L+ PL+LVAMT I
Sbjct: 183 NLKQDFVQERLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTFI 241
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
AA+VSL+FSR NQ R ++ GI SGF+LY I ++K+FG SG++ P A IPV++ ++L
Sbjct: 242 AATVSLKFSRFNQSRSVILGGILSGFVLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 301
Query: 351 SILILLQKEDG 361
ILL +EDG
Sbjct: 302 GATILLHREDG 312
>gi|254282266|ref|ZP_04957234.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
gi|219678469|gb|EED34818.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
Length = 353
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 123/361 (34%), Gaps = 12/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY + L T L + L + + + + + Y +P
Sbjct: 1 MGKI-DRYIGRAILGGTFAVLGVLVGLDALSTIVDEAEDLSDR--YGFIDMMSYVGLTLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + +PF L+ +V L +SELV+ R+ G+SI QL + ++L + +V
Sbjct: 58 RRIHEFMPFAALIGALVGLGRLAGSSELVVVRSAGVSIGQLAISVMKPALLAAVVGFVVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA S E++ I + + + W + + + +
Sbjct: 118 DFIAPSSEQLAITQRALAQRSESTVSARHGSWNRDGG-----TFIHVSAVQRGGVAYGLS 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
+ D+ ++ +A+ D L++VV Q + N I D
Sbjct: 173 LFSFDEDKHLVRSLNAERGTYRGDHWLLEEVVLTQLESEKTTVSQYLTWRWNTQITPDLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S +++ F + E F+ + PL + + L+A S
Sbjct: 233 VLEVVEPESLPVFKLWPWAKFLEQQG-LTATDIELAFWRKVTQPLAIAGLVLVAMSFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G M L PV AA+ P++ I +L +
Sbjct: 292 PLREGSMGARIFAGVIVGVMFRISQDFFGPASVLFGLPPVLAAITPILFCWLAGIWLLNR 351
Query: 358 K 358
+
Sbjct: 352 R 352
>gi|37520500|ref|NP_923877.1| hypothetical protein gvip124 [Gloeobacter violaceus PCC 7421]
gi|35211494|dbj|BAC88872.1| ycf84 [Gloeobacter violaceus PCC 7421]
Length = 387
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/369 (13%), Positives = 126/369 (34%), Gaps = 17/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L+ + + I ++ ++ + R+P II
Sbjct: 18 IMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQII 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L ++ + L+ E+ +A G+SI +++ P ++ S+++ + T +
Sbjct: 78 TYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNEVV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----------QQDIFIGAKKILPEN 173
+ + + + GD+ + + I + + +
Sbjct: 138 VPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGEREYALIRLFYARRYSDG 197
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTL 228
++ + + D+ D + + Y R + +
Sbjct: 198 IMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLIGNDGTYRNILQFQEQQV 257
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
I F + + + E+ + + ++ Y IP + A
Sbjct: 258 KISEDPLKFAQEVRRPEEMTTVELRRYIE-LAQNARQEIRGLLVSLYQKYAIPSVCFAFA 316
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ A + L R++ + + I F Y + I ++ G++G+L P A +P ++T+
Sbjct: 317 LVGAPLGLRRQRTSN-ALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWLPALITM 375
Query: 349 SLSILILLQ 357
++ +L +
Sbjct: 376 AVGAYLLWR 384
>gi|330827963|ref|YP_004390915.1| putative permease [Aeromonas veronii B565]
gi|328803099|gb|AEB48298.1| Predicted permease [Aeromonas veronii B565]
Length = 356
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 69/362 (19%), Positives = 132/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L + + L +I E +G+ NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSILLCEITLVGLAGLIKYVEQLKSVGD-GNYDMINALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMIMVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + N +I + + T
Sbjct: 120 EYVAPIAKRMADDIKAGALSEGRLTVSAYGVWARDGNNFVNING-----VRNDGALTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDG 236
+ K+I A + LK+ ++ + + +
Sbjct: 175 LYRFTPERKLIDVVQAQEGVFERHHWLLKQTQVTRFDDPAQIRSEQHDKMEWSSELTPKQ 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S + S ++ + + + +N R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLSVSGLLDYIGYLD-ANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI +GF +Y + + P+ AA+ P +L +S IL
Sbjct: 294 GPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILS 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|149279360|ref|ZP_01885491.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
gi|149229886|gb|EDM35274.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
Length = 367
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 54/355 (15%), Positives = 113/355 (31%), Gaps = 3/355 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y YL T LY L ++++ + DL+E + ++ A +P
Sbjct: 9 KIIDWYIISKYLGTFLYTLTLFVVIIVIFDLSEKLDDFLSNNLTFWQVVSLYYAGSIPFY 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V + G+S + L P+ + + ++ +
Sbjct: 69 VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFISASIIFAANLGANLY 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + D I + + K D +
Sbjct: 129 VLPYTNTLKNTFENTYVKKNDPSSKSDIHMKLDARTYIYMRSFDNKNKTGAQFSLDNFNG 188
Query: 183 TIDKKNKI--IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + D+ ++ + + + + ++ D F +
Sbjct: 189 DEMTRKIVADEIKWDSLKRSWKLTNYSIRDIKGLKETMTNGAGKTKDTILDMRPDDFSAY 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + S E+ K+ + Y + PL +TLI ++S R
Sbjct: 249 DNIFENLSNQELSDKIKKEKIRGSGIMNDLLFERYKRYLHPLSAYVLTLIGVALSSRKVR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + GI F K F G P+ A L+P I+ L +L
Sbjct: 309 -GGVGLPLGIGILLSFTYIVFNQFAKMFSLKGEFPPLLAVLMPTIIFGILGFYLL 362
>gi|167622904|ref|YP_001673198.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
gi|167352926|gb|ABZ75539.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
Length = 352
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 123/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + T+ LL L +I + +G Y++ V +P
Sbjct: 1 MRILDFYIARTLISTSSLALLVLTGLSGIIKWVDQLRLVG-RGTYTMMDAGVYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ L SELV+ ++ G+S Q+ + +I L I +++
Sbjct: 60 DIELFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITMSAMKTAIPLMIIVMMLTE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E ++ + G S+ W + + +I + + D T
Sbjct: 120 WVAPVAELRAKEIKRTNISGGSLIDSNRGIWAKDGDLFVNIGG-----AADINNLRDITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
D + AD A + +L V + + +
Sbjct: 175 YEFDDTTTLTSTIHADSAEYKDKYWQLYDVRRTTLTDDRVVLTNLKEEKWVSSLTPEKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + S ++ + + +N R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPEALSIEGLLDYLDYLKSNNQASE-RYELALWRKLLQPVTVAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L +A +P ++ ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYFIRK 352
>gi|313895766|ref|ZP_07829321.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975595|gb|EFR41055.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 366
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 134/359 (37%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 7 ILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI+ ++ P V+ ++ + +L +
Sbjct: 67 MWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEYV 126
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
++I + KS ++ Q + A+ E + +
Sbjct: 127 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSLQ 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGFQ 238
K+ H ++A+ A + + Y ++ + L +
Sbjct: 187 VFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQVLPVQKDPRQII 246
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ ++++ ++ + + E + Y + +P+ + TLI + ++
Sbjct: 247 REQKSPEEMTMRELRRQIA-LMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGIQP 305
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F Y ++T+ +F + G+L P+ A IP I+ I ++ +
Sbjct: 306 TRNSSSA-GFAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGIIAGAILFRR 363
>gi|304437499|ref|ZP_07397457.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369549|gb|EFM23216.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 376
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 134/359 (37%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 17 ILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 76
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ +SE+ ++ GI ++ P ++ L+ + +L +
Sbjct: 77 MWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFLVSVGAILFNEHV 136
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
++I + KS ++ Q + A+ E +
Sbjct: 137 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYNAEQQQLTGVSLQ 196
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQ 238
K+ H ++A+ A + + K Y + + L +
Sbjct: 197 IFGADGKVSHVENAEYAEWTGSEWIMHKGDVYDIADEHLERRMRFETQVLPVEKDPRQII 256
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +++ ++ + + E + Y + +P+ + TLI + L+
Sbjct: 257 REQKSPEEMTMRELRHQIA-LMQTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLGLQP 315
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F+ Y ++T+ +F + +L P+ A IP I+ I I++L +
Sbjct: 316 TRNSSSA-GFAMSVIIIFIYYALMTMGNAFARGEVLPPMLAVWIPNIVGIIAGIILLRR 373
>gi|189345952|ref|YP_001942481.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
gi|189340099|gb|ACD89502.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
Length = 360
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/356 (17%), Positives = 134/356 (37%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L+R+ F+ ++ + L+ + L +I + E ++ + IS +P
Sbjct: 1 MKLLYRHIFRQFMTSFLFASIAFAALFTLITMVENLDEFFDR-GIGISGIVWYYLLALPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q P L+ +I+ L+ +SEL R+ G+ + QL+ P+V+G +L+ +L +
Sbjct: 60 TFQITAPVAALLASILTAGRLSASSELAAIRSAGVGMSQLMRPYVLGGLLISGINLLNAS 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + K I +Q + + I + + I +
Sbjct: 120 FLEPAAAKEKISFEKQVLNETRSGLHEGTNIHVIEPENRIVTIESFDAKHLQASKVTVEQ 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + K + G I + TLN+ + + Q
Sbjct: 180 FNGSRLISRKDASRMVFDPAIDRWIMQKAAIRSFGADPGEISFSTGNDTLNLLLSIQSLQ 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S Q + + + + ++ RA + + +PL + + I +S
Sbjct: 240 ELSLQPEEMNLMQHYRYVKEKMQAGFPGLDRARVKLHAKTALPLASLVIIFIGVPLSTVK 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS +A +F GF+ + + S G +GI+ P AA +P+IL + L+
Sbjct: 300 KRSG-LAAEIAIALFIGFLFLGMQKTVASLGYNGIIEPWIAAWLPIILFLGAGALL 354
>gi|304413751|ref|ZP_07395195.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
gi|304283842|gb|EFL92236.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
Length = 358
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 78/362 (21%), Positives = 141/362 (38%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I E ++GE +YS+ + VP
Sbjct: 3 MFGVLDRYIGRNILHTILMTLFMLVSLSGIIKFIEQLRKLGE-GSYSVLGAGIYTLLSVP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ + L SEL++ +A G + Q+ + + +I L + T+++
Sbjct: 62 KDIEIFFPMAALLGVLFGLGTLASRSELIVMQASGFTRTQIASAVMKTAIPLVLLTMVIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+I D + G + W + I + ++
Sbjct: 122 EWVAPLSERIASDYRTKMIFGGAILTTQSGLWARDGENFLYINH-----ILNDNTLSGVN 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
ID++N+++ + A A ++ +L +V E S T I + D
Sbjct: 177 IYHIDQENRLLSVRYAATATFKDNVWQLSQVDESDLSDAKKINGSKTLTGEWKINLTPDK 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + + N + R + + I PL + M L+A S
Sbjct: 237 LGIVSVDPDSLPISGLRDYIQYLK-QNKQESLRYQLIMWNKIFSPLSVAVMMLVALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + V GI GF+ Y + I + PV AL+P +L + +S +LL
Sbjct: 296 GPLRTVTMGVRVMVGIAVGFLFYVLNQIFGPVSLVYKMPPVIGALLPSLLFLLVSWYLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|296104923|ref|YP_003615069.1| lipopolysaccharide export system permease protein LptG
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295059382|gb|ADF64120.1| lipopolysaccharide export system permease protein LptG
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 360
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/347 (17%), Positives = 115/347 (33%), Gaps = 3/347 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + I F
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQNFVYIERVKGDDELGGVSIYAFND 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
+ + D ++ + +I + S T + D
Sbjct: 183 ERRLQSVRHASSAKFDPEHKQWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVV 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + + + S R + + I P+ + M L+A S R
Sbjct: 243 ALDPDALSISGLHNYVKYLKSSGQ-DAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGPLR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
S + V GI GF+ Y + I + P+ AL+P
Sbjct: 302 SVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASF 348
>gi|241760405|ref|ZP_04758500.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
gi|241319283|gb|EER55761.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
Length = 356
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 141/361 (39%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNSAKLGQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 60 RAYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
DK + + + +LK + G ++ ++ I +K +
Sbjct: 175 QRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + K+N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIDHLEKNNQ-NTQVYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P +L L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|317402625|gb|EFV83184.1| membrane protein [Achromobacter xylosoxidans C54]
Length = 392
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 124/370 (33%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ L+ + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK--FSMMALLYMQALAIPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWIVTIPLMIGAALLSEYVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + I L + T K
Sbjct: 124 AEMKSGEANLMFRGKAGGDRLNSGYWFKEPTANGGTRIINIAALQGDGQVTGVTLYEFKK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTLN 229
+ A + + + LK V E + + T++
Sbjct: 184 DLTLSVLSTAPNGLFAHGDLVLKDVSETRLDDNAAETLADARPPKNPPAVVVKVPERTVD 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + +N R + + P L+ M
Sbjct: 244 TTLSAERLLARVLTPERMSIVTLLDYVDYLR-NNQLQYGRQVVALWRKLAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + L +R V GI G + + + + G G P AL P I ++
Sbjct: 303 IAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPPWLTALGPNIGAMA 362
Query: 350 LSILILLQKE 359
L++ + E
Sbjct: 363 LALGAMSYME 372
>gi|304311790|ref|YP_003811388.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
gi|301797523|emb|CBL45743.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
Length = 352
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 127/359 (35%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY L + LL + L V + Y + + +P
Sbjct: 1 MRLLDRYIGVSVLTSVAGMLLLIVGLDVVFSFIGELEDL--KNQYQMPQALQYILLTIPR 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P TL+ ++ L TSEL + RA G+S+ +++ V +L+ + +++
Sbjct: 59 RVYDYVPVATLIGCLIGLGMLANTSELTVIRAAGVSVMRIVWSAVKPVLLVVVGALVLGQ 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ L W D D S W + + + + +
Sbjct: 119 YVVPKTEQYAQGLRTLWIDGSDTISSRNGFWYREGD-----EFFHVNAIQTDGVVYGLAR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQ 238
D +++ + A+ + D +L+ V ++ + S+T I
Sbjct: 174 YVFDGDQRLLEAEYAERGVFEGDHWRLENVRRTRFDQDHTQYATMESSTWRSQITPQLMS 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S ++ + ++ +I + + F+ + P + M IA S
Sbjct: 234 LVVLKPTALSLTDLYTFARYRDQQSI-SSGQFYYAFWKKTLQPATTIVMVFIAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI G + ++ + P+ AA +P+ + + + I +L +
Sbjct: 293 LRSVTMGQRLITGIIVGLVFTYAQDMLGHISVVYNVPPLIAAGLPIAIFLGVGIKLLRR 351
>gi|260596297|ref|YP_003208868.1| lipopolysaccharide ABC transporter permease [Cronobacter turicensis
z3032]
gi|260215474|emb|CBA27593.1| Lipopolysaccharide export system permease protein lptG [Cronobacter
turicensis z3032]
Length = 359
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/356 (19%), Positives = 128/356 (35%), Gaps = 3/356 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + T + L + L +I + + GE +Y+ VP I
Sbjct: 5 VLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGE-GSYTALGAGTYTLLSVPKDI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P L+ ++ L + SELV+ +A G + Q+ + +I L IFT+ + +
Sbjct: 64 QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A GE++ +L Q G + W + + I + F
Sbjct: 124 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGSNFVYIERVKGENELGGISIYAFNDKR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSE 242
+ + D ++ + +I + T T + D +
Sbjct: 184 RLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVAL 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + +++ S R + + I+ PL + M L+A S RS
Sbjct: 244 DPDALSISGLRNYVTYLKASGQ-DASRYQLNMWSKILQPLSVAVMMLMALSFIFGPLRSV 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V GI GF+ Y + I + P+ AL+P +S+ +L+++
Sbjct: 303 PMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKR 358
>gi|319637673|ref|ZP_07992439.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
gi|317400828|gb|EFV81483.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
Length = 356
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 141/361 (39%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGAKLGQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 60 RAYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
DK + + + +LK + G ++ ++ I +K +
Sbjct: 175 QRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + K+N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIDHLEKNNQ-NTQVYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P +L L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|229588598|ref|YP_002870717.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
SBW25]
gi|229360464|emb|CAY47321.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens SBW25]
Length = 359
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 125/362 (34%), Gaps = 17/362 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L L + L + + + + Y++ A P +
Sbjct: 4 LDRYIGSSVLIAILAVLGIILGLASLFAFIDEVGNVSDT--YTVWDVLSYVALTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L +SEL I RA G+SI +++ + +LL +VL+ +A
Sbjct: 62 DMMPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMACSVLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q S W + I + + T T
Sbjct: 122 PPAETTAQANRALAQGSGDAQSSKHGLWHRQGEEFIHI-----NAVQPGGLLIGVTRYTF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---------STTLNIPIKMD 235
DK+ ++ A A +K +L V + I N S +I +K +
Sbjct: 177 DKERHLLESSFAKRAQYSGEKWQLSDVTTTYFRNIGQGTNARTEVINVPSEEWDIALKPE 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + + + +N R F+ ++ P++ A+ L+A S
Sbjct: 237 LLNTVVMIPESLPISGLWSYIHYLKDQG-LNNGRYWLAFWVKVLQPVVTAALVLMAISFI 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS V G+ GF ++ P+ A L+P + +L
Sbjct: 296 FGPLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPTAICALAGFWLL 355
Query: 356 LQ 357
+
Sbjct: 356 RR 357
>gi|325954886|ref|YP_004238546.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
gi|323437504|gb|ADX67968.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
Length = 365
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 124/363 (34%), Gaps = 7/363 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L T + +L + +ID + +++ +
Sbjct: 1 MKILDKYIVKNFLGTFFFMVLILTSIAIIIDFTQKLDRIDSTGSTVTEALIHFYPYWGVW 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P + I L +E+V + GIS ++L P+V+ + L ++V N
Sbjct: 61 IVNTFLPVAVFISVIYFTSRLTAQTEIVGMLSGGISFYRLTRPYVIVAAGLAFTAMMVNN 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + +K + + + ++ + + +
Sbjct: 121 VVLPWANIKKNKYQYEHLLSMRARKEYYKQQVISAQISSNEYVFVESYDRIEKRSDSYFL 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDK----NSTTLNIPIKMD 235
++ + A + L+ V E + D +S + + D
Sbjct: 181 YQKFDSVQLKEQIMASSFTWDDKDSSYILQNVFERKVLSPKKDSIAYLSSKKIKLKATPD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + +E++K + + E + + P +T++A S+S
Sbjct: 241 EILPEGYVAETMNSFELMKFIESQKNKGSANVVVYENELQQRVSSPFSTFILTILALSLS 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A GI F+ I +F + G + P AA IP ++ L+ +
Sbjct: 301 -SKKRRGGIGVNLAVGITLAFVYIFFSQIATTFSEQGYVTPFVAAWIPNVVFGLLTTFLY 359
Query: 356 LQK 358
++
Sbjct: 360 FRR 362
>gi|254498610|ref|ZP_05111329.1| permease [Legionella drancourtii LLAP12]
gi|254352150|gb|EET10966.1| permease [Legionella drancourtii LLAP12]
Length = 354
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K L + L + L + L + +G+L +Y I++ A ++P
Sbjct: 1 MRILDRYIAKTVLTSIGLVTLMLVGLQILFYLFDQLGDLGKL-DYGITQAAFFVLMQMPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P +L+ ++ + SELV+ RA G+SI Q+ + S+LL ++
Sbjct: 60 QVYLFFPMASLLGCLIGLGAMANHSELVVMRASGMSILQITGAVLKASVLLIFLVTVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ D G ++ W++ N + + N++ ++
Sbjct: 120 TVVPYLSHYANDYKTASVSGGQTIRTAKGFWLRHGNDFISVGR-----ILPNNVLQNIYQ 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
D+++ + + A V + ++ + ++P+K
Sbjct: 175 FRFDEQHHLKLARLIREAKYSEQGWVAYNVQQTEFVVDHTRAQTFATLPWDVPVKPKILN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + +E+ + + +S + + + F I+ P + M ++A
Sbjct: 235 ISSIEPDEMTLHELNRYIREQKRS-HQNVHNYQFAFLQRIIQPFTTMVMMVLAIPFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + L AAL P L L + ++ +
Sbjct: 294 LRSSTMGSKLLVGAAVGFGFHILSRFFGPVSSVFQLPAGLAALGPTFLFALLGLYLMRR 352
>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
Length = 360
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 64/355 (18%), Positives = 125/355 (35%), Gaps = 7/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + YLK L + + V+D E ++ S A+ T++P +I
Sbjct: 3 ILTRYIARAYLKMLSLCLGSFLTIYLVVDFMEKVSRFT-RAGASWKHLALFFITKIPEMI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ L+ TSEL R+ G+S++++ P +V S+L+ + + + +
Sbjct: 62 IDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + +
Sbjct: 122 LPKSFAQRTYIQEVLIQKKSASAFFRQQNIWFREEGTVLRASLFEPARNELKGITLWDLQ 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGFQK 239
+ R +ADLA++ L+ V Q+ + + +K +
Sbjct: 182 PGTGEPL-KRTEADLALLGPKGWVLRDAVVRQFRDGEVSATQKYRELPVQLQLKPADLKT 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S S E+ + S + R TQ + I +P M + +L
Sbjct: 241 LGKYSDSMSLVELNRYCRKLRASG-YDPTRYVTQMHSRISMPFGCAVMAFLGIPFALRGG 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ V I GF+ + +++ S G+ G+L PV AA + +
Sbjct: 300 RSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFIFFVAGAWL 354
>gi|323140935|ref|ZP_08075848.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
gi|322414673|gb|EFY05479.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
Length = 363
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 8/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K L ++ + + + Q + A L +P +I
Sbjct: 5 LLDRYVLKELLYPFVFGIAAFSSIFIASTMLFKITQYMTKYGAPLETVARLFMYNLPEVI 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ +A G+S ++++ P +V + +F+++ +
Sbjct: 65 NYTFPMSMLLAALMAFGKLSGSSEITAMKAGGVSYYRIVAPVLVVGFFVSMFSMVWAEKV 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + + + + ++ + A K + D T I
Sbjct: 125 VPTSKAKASIILNEEIRHNTRPTTQNHIIIKTISGDTQRVTYANKFDEKLGKMTDIT-IE 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQ 238
K KI + A N ++ + + + +
Sbjct: 184 EFNKGKIARIQTAKEGYWENGSWRIVDGNVFALDDKDGVQSSAKFKEQIIPLNFSPKQIS 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ + E+ + +S + R + + I IPL +I A + +
Sbjct: 244 WEQKEPEEMTIRELREYISMLEEQ-HTSAARQWCEIFMRINIPLASFFFAMIGACLGTQK 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R++ I + I F+ Y I+T GK G + P+ A +P IL + + + ++ +K
Sbjct: 303 QRTSS-SIGLGISIIVIFIYYAIMTFTTGLGKGGAMPPLLACALPNILCLGVGVYLMKKK 361
>gi|320530395|ref|ZP_08031454.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
gi|320137359|gb|EFW29282.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
Length = 369
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 134/359 (37%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 10 ILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI+ ++ P V+ ++ + +L +
Sbjct: 70 MWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEYV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
++I + KS ++ Q + A+ E + +
Sbjct: 130 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSLQ 189
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGFQ 238
K+ H ++A+ A + + Y ++ + L +
Sbjct: 190 VFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQVLPVQKDPRQII 249
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ ++++ ++ + + E + Y + +P+ + TLI + ++
Sbjct: 250 REQKSPEEMTMRELRRQIA-LMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGIQP 308
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F Y ++T+ +F + G+L P+ A IP I+ I ++ +
Sbjct: 309 TRNSSSA-GFAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGIIAGAILFRR 366
>gi|117619151|ref|YP_858152.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560558|gb|ABK37506.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 356
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 132/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L L + L +I E +GE NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSVLLCELTLVGLAALIKYVEQLKSVGE-GNYDMLSALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + N +I + + T
Sbjct: 120 EYVAPIAKRMADDIKAGALSEGRLTVSAYGVWARDGNNFVNING-----VRNDGALTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
+ K+I A + LK+V ++ + + +
Sbjct: 175 LYRFTPERKLIDILQAQEGVFEQHHWLLKQVQVTRFDDPRQIMSETQPQMEWSSELTPKQ 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S + ++ + + + +N R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLPVAGLLDYIGYLD-ANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI +GF +Y + + P+ AA+ P +L +S IL
Sbjct: 294 GPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILS 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|261364966|ref|ZP_05977849.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
gi|288566764|gb|EFC88324.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
Length = 356
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 137/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL ++ + T +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFALATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WIAPVLSQKAENIKSTAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
DK + + + +LK + ++ ++ I +K +
Sbjct: 175 ERNDKNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYISHLENNNQ-NTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|326799922|ref|YP_004317741.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
gi|326550686|gb|ADZ79071.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
Length = 358
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 115/356 (32%), Gaps = 1/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y K YL T ++ + ++ + D++E + + A +P
Sbjct: 1 MNIIDKYIIKKYLGTFVFTMAIFTVVAVIFDISERMDDFLKNHAPLSKIVFEYYAGFIPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P I + I + +E+V G+S + L P+ + + ++ + T++
Sbjct: 61 YLNFLSPLINFIAVIFFTAKMADQTEIVPILNGGMSFRRFLRPYFIAASIICLVTLIFNI 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I K+ I + D N I + +
Sbjct: 121 YIIPRTNKLKIGFENIYVKPIDNNSKSSTHMQIDKNSFVYIDNFDNDRKVGYNFILETFK 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ I R D + I S + + F+
Sbjct: 181 GQELQEKLIADRITWDSVKNNWKIENYTIRIVNGLNEKMIKGTSKDTTLDMSPRDFEIRD 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
F + + E+ + + + + Y + P +TL+ S+S + R
Sbjct: 241 NVFMAMTTQELNENIEKEKIRGTGRMTDLKLEKYKRFIYPFSAYILTLMGVSLSSKKVR- 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + GI F I F G L P+ AA IP ++ + + + +L +
Sbjct: 300 GGIGLSLGVGIALSFTYILFIQFANMFSLKGGLPPLLAAFIPSLIFLGVGLYLLYK 355
>gi|255531333|ref|YP_003091705.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
gi|255344317|gb|ACU03643.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
Length = 367
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 3/357 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y YL T LY L ++++ + DL+E + ++ A +P
Sbjct: 9 KILDWYIISKYLGTFLYTLTLFVVIIIIFDLSEKLDDFLSANLTFWQVISLYYAGSIPYY 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V + G+S + L P+ V + ++ +
Sbjct: 69 VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFVSAFVIFAVNLASNLY 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I ++ + D I N + K D
Sbjct: 129 ILPYTNQLKNTFENTYVKKNDPSSKSNIHMKLDDNTYIFMDNFDNKSKTGTKFSLDNFKG 188
Query: 183 TIDKKNKI--IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K I + D+ ++ V + + + + ++ D F +
Sbjct: 189 DVLTKKLIADEIKWDSLKRSWKLTNYSIRYVNGLKETFVSGTSLTKDTVLDMRPDDFSAY 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + S E+ +K+ + Y + PL +TLI ++S R
Sbjct: 249 DNVFENLSNKELSEKIRKERIRGSGIWNDLLFEQYKRYLHPLSAFVLTLIGVALSSRKVR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + GI F K F G + P+ A + P + L +L +
Sbjct: 309 -GGVGLPLGIGILLSFAYIVFNQFAKMFSLKGGMPPLLAVIAPTLFFGLLGFYLLRK 364
>gi|121534980|ref|ZP_01666798.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
gi|121306393|gb|EAX47317.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
Length = 361
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 136/361 (37%), Gaps = 8/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K L ++ + + + S+ L +P
Sbjct: 1 MRILDKYILKEMLGPFIFGIAAFSSVFIGTSTLFRLARYITEYGASVYSVTKLFIYSLPG 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ +++ F L+ +SE+ ++ G+S ++L P + + ++ I V++
Sbjct: 61 IIVLTFPMSMLLASLLAFGRLSASSEITAMKSGGLSFFRLAAPVFIAAFVVSIVAVILNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++++ + + + I + + + + A+K + T
Sbjct: 121 AVVPRANNAYQNVLRYEIEKSRPKTQEHIVIKDVKDGEIERLTYARKFDEAANAMYAVTV 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDG 236
K +++ ++A+ AI N + ++ + Y + + +
Sbjct: 181 QEF-DKGRLVRVENAEKAIWDNGRWIMESGIIYDVAPEGQLQRTLRFDKQFMPVEKSPRE 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ + E+ + + + E + + + IP + LI + L
Sbjct: 240 IAREQKKPEEMTIKELKQHIKVL-QREYVKTSTYEVELHQRLAIPAASLVFALIGTPLGL 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ RS+ + I F+ YTI+T+ + G+ G + V AA IP I+ I + ++
Sbjct: 299 QPHRSSSSIGLGIS-IIIIFIYYTIMTVFTALGQGGAIPAVLAAWIPNIVFIIIGAFLIR 357
Query: 357 Q 357
+
Sbjct: 358 K 358
>gi|237807324|ref|YP_002891764.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
gi|237499585|gb|ACQ92178.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
Length = 356
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 128/362 (35%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L + + L +I + +GE + +P
Sbjct: 1 MFGILDRYVGRTVIMAILMCTVMLVGLSSLIKFVDQLQNVGEGSFTTFHAILR-VLYAIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G+S +++ + I + +L+
Sbjct: 60 GDTVLFFPMAALLGGVIGLGQLASSSELVVLQAAGLSRAKIVISALKTVIPVMFLIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ D+ G S W++ + I + T
Sbjct: 120 EYVAPIAEQKAHDIKTSAISGGKITASTYGIWVKEGHDFISIDTLF-----RDGSLRGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
+ ++ + +A+ LK +V Q K + D
Sbjct: 175 LYRFNLNGELQEVIRSAMAVYQQQAWHLKDIVITQLQDKQQIKFKNLTDWVWKTNLTPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + +S+ + E +F+ ++ P+ ++AM L+AAS
Sbjct: 235 LGVVSVSPDELSAQGLYNYISYMKSNGQQ-VDDYELEFWRKLLAPVSVIAMLLLAASTIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G+ GF + ++ F + PV A +P ++ + ++I +L
Sbjct: 294 GPLRSVSMGARLISGVMMGFAFFVANQVLGPFSLVYNVPPVIGASVPSLIFMGVAIYMLQ 353
Query: 357 QK 358
++
Sbjct: 354 RR 355
>gi|145300688|ref|YP_001143529.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853460|gb|ABO91781.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
Length = 356
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 133/362 (36%), Gaps = 11/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L L + L +I E +GE NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSILLCELTLVGLAALIKYVEQLKSVGE-GNYDMINALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVQFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + N +I + + T
Sbjct: 120 EYVAPIAKRMADDVKAGALSEGRLTVSAYGVWARDGNNFVNING-----VRNDGALTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
+ K+I A + LK+V ++ + + +
Sbjct: 175 LYRFTPERKLIDILQAREGVFEQHHWLLKQVQITRFDDPAQILSETQAQMEWSSELTPKQ 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S + ++ + + + +N R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLPVAGLLDYIGYLD-ANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI +GF +Y + + P+ AA+ P +L +S IL
Sbjct: 294 GPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILS 353
Query: 357 QK 358
+K
Sbjct: 354 RK 355
>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
Length = 355
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 68/357 (19%), Positives = 132/357 (36%), Gaps = 10/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y + TT L + + +I E +G NY ++ A+ VP
Sbjct: 1 MRIIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIG-RGNYDLAHAALYVLYAVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ L SEL++ +A G+S ++ + ++LL I ++ +
Sbjct: 60 DVEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A SGE ++ Q G + W + + +I + +
Sbjct: 120 WLAPSGEAKAREIRAQAISGGSLIAAKNGVWAKDGDYFVNIGEVLDR-----GQLKKVQI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
+ + KI A AI + L V E+ I S N +
Sbjct: 175 YGFNDELKIDSWLSAKSAIYQDKSWLLTDVEEFSLTENEIITKSHSQKIWNSSLTPKKLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S S +I + + +N R + F+ I+ PL + M L+A S
Sbjct: 235 VVTVTPESLSLRGLIDYLDYLE-ANEQDPSRYKLAFWRKIMQPLTVAVMLLVALSFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+F+G + + ++ S L P+ A+IP + + ++ +
Sbjct: 294 LRSVSMGARIMMGVFTGILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIAWYFI 350
>gi|238927586|ref|ZP_04659346.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
gi|238884511|gb|EEQ48149.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
Length = 379
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/359 (14%), Positives = 132/359 (36%), Gaps = 7/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 20 ILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ +SE+ ++ GI ++ P ++ ++ + VL +
Sbjct: 80 MWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFVVSVGAVLFNEHV 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
++I + KS ++ Q + A+ E +
Sbjct: 140 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYDAEQQHLTGVSLQ 199
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQ 238
K+ H ++A+ A + + + Y + + L +
Sbjct: 200 IFGADGKVSHVENAEYAEWTGSEWIMHQGDVYDIADEHLERRMHFETQVLPVEKNPRQII 259
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ ++ ++ + + E + Y + +P+ + TLI + L+
Sbjct: 260 REQKAPEEMTMRELRHQI-TLMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGLQP 318
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R++ A + F+ Y ++T+ + + G+L P+ A IP I+ I ++L +
Sbjct: 319 TRNSSSA-GFAMSVIIIFIYYALMTMGNALARGGVLPPMFAVWIPNIVGIFAGGILLRR 376
>gi|268317250|ref|YP_003290969.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
gi|262334784|gb|ACY48581.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
Length = 361
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 122/358 (34%), Gaps = 4/358 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + L L+F ++ V+ E + + V + +P I+
Sbjct: 3 LIDRHIVRRLLLGYLFFTGALIVFFIVLHYVEYIDDFMDRGASMREVFLVYYPSYIPEIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + + V + + E+V + G+S+++LL P V ++++ F +
Sbjct: 63 RLTSPLALFLACLYVTGRMAQGLEIVALQMSGVSLYRLLRPCVALALIVTGFMFWFNGWV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +Q Q Q + +
Sbjct: 123 VPVTNRTVVAFDEKYLSKTPRQFDLSHLHRQARPGQFLSVGYYDRERRIAYRIALQQFAE 182
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + V + + + + L++P+ +
Sbjct: 183 GRRLAYRLDAPRMEWNDSLQAWVVPEGIARHFEPDGREVRRPVRRQQLDLPLYPRDLART 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + ++ +S H R +Y P + + LI ++ R
Sbjct: 243 EREVEAMTLPDAAAHLAALRRSGAGHLGRPLVAYYSKFAYPFANLILVLIGVPLA-SVRR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+ F + +++ FG + L P+ A +P ++ ++ +++++ +
Sbjct: 302 RGGQAVQIGIGLGVAFAYLALQKLIEPFGYTETLPPLLVAWLPHLVFLAGALVLVART 359
>gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas arsenicoxydans]
gi|133739479|emb|CAL62530.1| putative permease [Herminiimonas arsenicoxydans]
Length = 382
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/382 (15%), Positives = 117/382 (30%), Gaps = 26/382 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +YF ++ ++ L+ + L DL +G Y I + +P
Sbjct: 1 MKILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGH-GGYKIQHALLFVLLSMPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I SE I RA +S + ++ I T +V
Sbjct: 60 YLYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-------IFIGAKKILPENH 174
+ + + + + Q+ W + + + +
Sbjct: 120 FVVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDG 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK-----------------VVEYQYG 217
D ++ + A A D V L +
Sbjct: 180 QLTDLKIYEFNRNFHLTALITAARADYQGDNVWLLSNGSQAEFGETELMGAAVATDITTA 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ S L + + A S Y+++ + ++N R E +
Sbjct: 240 ISTRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVNYTQYLAENNR-ETARYEIALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+V P + M +A + RS + + GI G I ++ G P
Sbjct: 299 VVYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A A++P +L + +I LL E
Sbjct: 359 ATAILPSLLFLLAAIGALLWVE 380
>gi|319941841|ref|ZP_08016163.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
gi|319804774|gb|EFW01641.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
Length = 377
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/378 (15%), Positives = 128/378 (33%), Gaps = 23/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ R F K L +T++ L+ + L DL + +G +Y+I R + + +P
Sbjct: 1 MSVISRQFAKDILLSTIFVLIVLIALFAFFDLIGQLDDLG--ADYTIGRAFLTTSLTLPS 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ TSE + RA G S W+L ++ ++ + T +
Sbjct: 59 RAYEVMPLAVLLASVYTMSKWASTSEFTVLRASGCSPWRLARSLLIPGVICVLATYGLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF-- 179
+A + ++ ++ + + W++ + + I N D
Sbjct: 119 IVAPAAQRFAQEVRSGTNASLSIRGFASGAWVRDVINSPEDGRVERYINVRNLSASDRQL 178
Query: 180 -----TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--------- 225
+++ A+ +L V Y + K++
Sbjct: 179 TGAWRMFEFNRDDGRLLRLVRAESGRWTGTGWELTNAVIIHYPAVTATKDAPQQGSVTTE 238
Query: 226 ----TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + D + + S E+ + + ++ + F+ P
Sbjct: 239 HVDALKLTSTVNPDILSVMTTKPDRMSMDELNRFIEHLDQV-HQDTEHYVSVFWSKAFYP 297
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + M +A + +RS + + G+ G Y + I + P A
Sbjct: 298 FICLVMLAVAMPFAYMNARSGGMAVKIFCGVLVGIAFYALNNIFLYLSVLSSMPPALMAA 357
Query: 342 IPVILTISLSILILLQKE 359
+P IL + L L E
Sbjct: 358 LPSILMCFAAALSLWWLE 375
>gi|291532164|emb|CBL05277.1| Predicted permeases [Megamonas hypermegale ART12/1]
Length = 361
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/360 (18%), Positives = 141/360 (39%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K + T ++ + + Q S S L +P
Sbjct: 1 MRILDKYILKETIMTFIFGICAFSAVFLGSGTLLRIAQYITQYGASFSAIVRLIIYSLPG 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ ++ F L+ SE++ +A G+S +L+ P + S+ + IF++
Sbjct: 61 IIVWTFPMSMLLAALLTFGRLSGNSEIIAMKACGVSFKRLVTPVIAFSLGVSIFSIGFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + DL++ +S ++ + + D S
Sbjct: 121 YVVPASNQAYADLVRYEIQGNTSPESQEHIIIKQIQDGNIQRLVYARKYDAETGNLDNLS 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGF 237
I ++ K++ ++A+ A D+ + V Y + + +S L I
Sbjct: 181 IQEFEQGKMVRVENAEYAKWSVDEWVMYNGVLYDLSQPNTERMMKFDSQVLPINQTPKQI 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
K ++ + E+ ++++ S + E + Y +P+ + LI A + ++
Sbjct: 241 IKSQKKPDEMTIKELREQINIMK-SQYVDTKKLEIELYQRFTVPMASLMFALIGAPLGIQ 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+RS+ I F+ YT++T+ + G++ + PV A IP I+T+ I ++ +
Sbjct: 300 PNRSSSSIGFGIS-IIIIFIYYTLMTLAGAIGQNSFIPPVIAVWIPNIVTLIAGIYLIRK 358
>gi|332292438|ref|YP_004431047.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332170524|gb|AEE19779.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 358
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/355 (16%), Positives = 118/355 (33%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K Y+ T + L+ + + +++L E +++ A+
Sbjct: 1 MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKIL-ANEAPFGEVALYYLNFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S ++ L P+++G+ ++ + +
Sbjct: 60 FANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAFFLGT 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFT 180
+A K + I ++ K + + QI + + + +
Sbjct: 120 YLAPRANKGYNEFIFEYLKKNKKDRETQNVYRQIDTGDYIYVSSFTPRTKTGRNFTWEHF 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + KK + G I K MD
Sbjct: 180 EGNKMTYKMSAIRIRYNEEDTTYTLNSFKKRTITENGDILESKAKLDTVFNFDMDDLTPV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S E+ K ++ + R E +P+ +T+IA +VS R
Sbjct: 240 EYIAETLSTPELRKFIAKEKSRGSSYISRYEVTLQKRYSLPVAAYILTIIAVAVSA-MKR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I +A+GI F+ + + + P+ A P IL L++ +L
Sbjct: 299 RGGMGINLAFGIVLAFVFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAVYLL 353
>gi|312142810|ref|YP_003994256.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903461|gb|ADQ13902.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 366
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 119/364 (32%), Gaps = 8/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +Y +K + L+ + + DL + + L +P
Sbjct: 1 MKTVDKYIYKELIAPFLFGVAAFTGIFIGTDLIFEVTEYYIEWGVDVLTLLRLFFLSLPE 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ I+ + L+ SE+ RA GISI ++ P ++ ++ T+ +
Sbjct: 61 IIILTFPMAALLGTIMAYNRLSGDSEITAMRAGGISIMAIVLPALIMGLVTSGITIAITE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKILPENHIWEDF 179
I +I Q+K + + ++ S + ++ K +
Sbjct: 121 FIVPGANYQAEQIIHQFKHGERRPDTQYDLFLTPLDSRTSRPDYMLYAKSFNAENGRMTD 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM 234
+ + + +A+ A+ D Y R +
Sbjct: 181 VVLQSFEDGRPRSVLEAEEALWLRDGWSFFNGTVYFLDREDRSPSLEFSQYRSREDIHSP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K + + E+ + ++ + +F+ +P+ L+AA +
Sbjct: 241 AQAGKLGKDIDEMNIRELNEHIALLEQQGRAAYEE-RVEFHHRFSVPMASFIFALLAAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS I F+ Y ++TI + G G + P A + I+ + +
Sbjct: 300 GIKPQRSAGSATGFGISIIIIFIYYVLMTIGDALGSQGTIEPWLGAWLQNIIIFLVGSGL 359
Query: 355 LLQK 358
L +
Sbjct: 360 LYKT 363
>gi|292493020|ref|YP_003528459.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
gi|291581615|gb|ADE16072.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
Length = 354
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 125/360 (34%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + TL LL + L ++ ++GE NY + A +P
Sbjct: 1 MKILDRYVAKAVISNTLLVLLVLIALYTFVEFITELEEVGE-GNYGVMDALRYTAYSIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++P L+ +++ +L SELV RA G S+ ++ + ++ + T+L+
Sbjct: 60 YIYDLLPVAALLGSVLGLGSLAGQSELVAMRAAGFSVGRITRSALATGMIFVVVTILMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ L K ++++ W + + + N ++D
Sbjct: 120 VLAPPAKQAANTLRSLAKTGHLSEQAERGFW-----TRNNNNFNRIGRVLPNGQYQDIEI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
D+++++ A A + D L + + I + +
Sbjct: 175 FEFDEQHRLRVISRAAGATYHRDGWHLSDITQRIISSQGITTRRLPEALWESSLSPEMLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + + + + N + + F+ + P + M +A
Sbjct: 235 VVMVDPQQLSAWGLYRYIDYLEE-NKQATEQYQQAFWSKVFAPFNTLIMMFLAIPFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G G + + G AA P +L L +++L +
Sbjct: 294 LRSVSMGQRILVGALVGIGFFLFNRLFNQLGLVFEFSSWLAAAFPSLLFFGLGMVMLRRI 353
>gi|148265755|ref|YP_001232461.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399255|gb|ABQ27888.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 359
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 128/362 (35%), Gaps = 8/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY Y K L + + V+D E + N A+ TRVP
Sbjct: 1 MKIFSRYIATAYAKMLGLCLGAFIAIYLVVDFLEKIGRFA-RANAEWKFIALFFLTRVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II Q L+ ++ L+ SEL R G+S+ ++ P + + + T+ V
Sbjct: 60 IICQTASMAVLMATLLTLGMLSLNSELTAMRGCGLSLARITAPIFAIAFAVSLSTLFVSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G + + D I + ++ + A+ P + T
Sbjct: 120 FVMPRCNTQGQYIREVLIDKKSPSTF--FRQQNIWHKDENYILKARLFDPATGNLKGITL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGF 237
+ + R +A + + + VV + + + + +K
Sbjct: 178 WKTGTEMEPQQRIEATQGELRGNDWLFRDVVIREMAGGNIISTKSFPALLVKLNLKAADL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + E+I + + R Q + I + V M I ++
Sbjct: 238 KVVGKFSDNMGIRELISY-CDKLRKGGYDPTRFLAQMHSRISLSFAPVIMAFIGIPFAMR 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + + + GF + I +++ SFG++G+L P+ +A ++ I + I ++
Sbjct: 297 GGRSSGIALGIGTSLGIGFAYFIINSVILSFGQAGVLPPLVSAWATNLIFIMIGIWFGMK 356
Query: 358 KE 359
E
Sbjct: 357 VE 358
>gi|253991456|ref|YP_003042812.1| hypothetical protein PAU_03983 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782906|emb|CAQ86071.1| similar to putative membrane protein yjgq of escherichia coli
[Photorhabdus asymbiotica]
Length = 358
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/362 (22%), Positives = 141/362 (38%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ Y+ + A VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTTISAGLYALLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGALATRSELVVMQASGFTRMQVAGSVMKTAIPLVILTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + I +
Sbjct: 120 EWVAPQGEQMARNYRAQKMFGGSLVSTTKGMWAKDGADFIYIQRVMSDTEI---KGVNIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDG 236
DKK + D+ + ND KL +V E S ++ K +
Sbjct: 177 HFNDDKKLLSVKYADSAVYDENNDLWKLSQVEESDLTDSKKITGSQRISADWKTRLTPEQ 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + +S+ +S R + + I PL + M L+A S
Sbjct: 237 LGVVALDPEALSISGLYQYISYLKQSEQESG-RYQLNMWKKIFAPLSVAVMMLMALSFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + + GI GF+ Y + I + V AAL+P +L ++LSI +LL
Sbjct: 296 GPLRTVPMGVRIITGITLGFLFYLLNEIFGPLSLVYSMPAVLAALLPSLLFLTLSIYLLL 355
Query: 357 QK 358
++
Sbjct: 356 KR 357
>gi|119511693|ref|ZP_01630798.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
gi|119463678|gb|EAW44610.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
Length = 371
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 112/354 (31%), Gaps = 16/354 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RYF K + L+ + L ID + IS + + P I
Sbjct: 2 DRYFTKELVAPFLFGVGAFSSLGVTIDAVFELVRKIVESGLPISIAIQVFLLKFPNFIVL 61
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S+++ T + IA
Sbjct: 62 AFPMSTLLATLMTYSRLSGESELIAMRGCGVSVYRMVLTAVMLSLVVTGITFIFNEQIAP 121
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ +++ + + + +IL + F +
Sbjct: 122 AANYQATVTLEKALKSDRPTFQQSNIFYPEYRDVEQPDGSRNRILARLFYADQFDGKQMK 181
Query: 186 KKNKIIH---------RKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIP 231
I ++ ++ Y R + L +P
Sbjct: 182 GLTIIDRTTEGLNQIVVSESAQWNASDNVWDFYNGTVYLVAPDSSYRNILRFEHQQLQLP 241
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLI 290
+ + E ++++ R + + +P + V L+
Sbjct: 242 RTPLNLVERRRDSGEMNIRESLEQLEIQRIGGDRKEIRKLQVRIQQKFSLPFVCVVFGLV 301
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+++ RS + + F Y I I + G++G+L P A +P
Sbjct: 302 GSAMGSRPQRSGR-GTSFGVSVIVIFTYYLIFFISGAMGQAGVLSPFMGAWLPN 354
>gi|148261610|ref|YP_001235737.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|326405100|ref|YP_004285182.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
gi|146403291|gb|ABQ31818.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|325051962|dbj|BAJ82300.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
Length = 376
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 82/368 (22%), Positives = 147/368 (39%), Gaps = 9/368 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L Y + +L + G + + D ++ Q + P + R L RVP
Sbjct: 10 PLTLSLYIGRRFLGAVVAMQAGLTAIGALFDFLDLLRQSADKPQATFWRMLALEVLRVPW 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ QI+PF L+ I F+ L R+SELV++RA G S+WQ L V G+ L+G+ +
Sbjct: 70 LGMQILPFAVLLGGIFAFWRLTRSSELVVARATGTSVWQFLAVPVAGAALIGVLATTAGS 129
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ--------DIFIGAKKILPEN 173
PI+ L + S + + + A + +
Sbjct: 130 PISAIMFARAEVLYSTYLGVDSGPLSLQGGQLWLRQADDAGGKGGIAILHADAVHLHGKV 189
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + + + + R +A + +L+ P ++ + +
Sbjct: 190 LTTGHITVLRLTAQTTLQERIEAARGQLEPGGWRLESARILTPDGEPRAVSALRIPTTLT 249
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ Q+ ++ SF+ + + +S F + E F L+ +PL+ M L+AA
Sbjct: 250 VGRVQESFASPSALSFWALPGFIRLLRRSG-FSATQHELAFQSLLALPLLCATMVLVAAG 308
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S+ SR ++ G+ GF+L+ + + GKSG L AA P + L++
Sbjct: 309 FSMRPSRRGGAIQMIGAGVGCGFLLFMLSEVAAQLGKSGALPVGLAAWAPAAAGLMLALA 368
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 369 LLLHLEDG 376
>gi|124267133|ref|YP_001021137.1| hypothetical protein Mpe_A1944 [Methylibium petroleiphilum PM1]
gi|124259908|gb|ABM94902.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 373
Score = 134 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/368 (16%), Positives = 124/368 (33%), Gaps = 16/368 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R + L + + + L F ID E + +G Y + A+ +P
Sbjct: 1 MRTVRRLLYADVLGAVTFVAVSFLSLFFFIDFVEELDDIG-RGAYRVHHAALYCLLELPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I L ++SE I R G+ + L+ + + T +V +
Sbjct: 60 RLYELLPIAVLIGTIYAMARLAQSSEFTILRTGGLGPGRALSLLAKIGLAFAVLTFVVGD 119
Query: 122 PIATSGEKIGIDLIQQWK-------DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + L + +N K + I + +
Sbjct: 120 YVGPYFDAKAQTLRSTLRGSASGGGNNSAWLKDRRAAAPGELPAGERIDSINIGNVGPDG 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTT 227
+ +D ++ +++ R A+ A++ + +LKKV ++ + ++
Sbjct: 180 LLDDVRIYEFSEEGQLLARVAAEHAVVEDGAWRLKKVRLTRWHAASGDGLPVDERRDELR 239
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ S S ++ + MS N R E QF+ + PL + M
Sbjct: 240 WPTRLTPSVVGAAVSPLKSMSTVDLYRYMSHL-SQNEQAAQRQEIQFWKKALYPLACLVM 298
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+A + +R+ + V GI G + + G P AA P
Sbjct: 299 VGLALPFAYLHARAGGVSVKVFGGILLGISFVLLNNVSTHLGLLRDWTPWIAAAAPGAFY 358
Query: 348 ISLSILIL 355
+ LS+
Sbjct: 359 LLLSMAAF 366
>gi|255066290|ref|ZP_05318145.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
gi|255049500|gb|EET44964.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
Length = 356
Score = 134 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 138/361 (38%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WIAPVLSQKAENIKSAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ DK + + + +LK + ++ ++ I +K +
Sbjct: 175 VRNDKNELRQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYISHLENNNQ-NTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|325919211|ref|ZP_08181260.1| putative permease [Xanthomonas gardneri ATCC 19865]
gi|325550311|gb|EGD21116.1| putative permease [Xanthomonas gardneri ATCC 19865]
Length = 368
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/365 (16%), Positives = 121/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +Y+ A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAFAYVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ V LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTAGMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---W 176
+ + L + N D + W + + + G +K+L
Sbjct: 123 ETVGPWAQNQADTLKTSARYNSDMAMARYSGLWAREGDTFLNALSGEEKLLDGGGTALDL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +D ++ A LA N L++V + + + + +
Sbjct: 183 HDVRLYHLDASGRLQQLTYAALAENRNGAWTLRQVRRDTFQERSVQRETFPELPWQSQLS 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S ++ + + + ++ E Q++ PL ++A+ L A
Sbjct: 243 PAALAAGLAKPRNLSARDLEQSIEYRRRNG-LDARDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|257468008|ref|ZP_05632104.1| hypothetical protein FulcA4_01652 [Fusobacterium ulcerans ATCC
49185]
gi|317062294|ref|ZP_07926779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313687970|gb|EFS24805.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 362
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 119/361 (32%), Gaps = 7/361 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y K ++K+ L+ + + V L ++ + + +S + T +P I
Sbjct: 4 KIIDKYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSD-GRFSANESITYILTMIPKI 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L+ +++ ++ E++ + GIS +++ + S ++ + + +
Sbjct: 63 LIDVAPLAVLLGSLMTVSSMASNLEIISLKTAGISFKRIVLFPICISAVIAVMVFYINDS 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + + +++ N +G + +
Sbjct: 123 LYPYSVRKNREIKDGERAKREMPVEKKNAFLRGENSNYVYLMGKINRETGFGENIEIVDL 182
Query: 183 TIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGFQ 238
+ LK Y ++ K + + F
Sbjct: 183 NEEFNKVERIITAKEGRYNFSKKVWVLKDANIYDGEKLEKPKEVKIFTENKYDDEPEKFI 242
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + E+ K + + P ++ + S+ +
Sbjct: 243 TKSVEPKTLTIKELKKSVREIKSIGG-DTRELLVEIGNRYSFPFSSFIISFLGLSLGSRY 301
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R I +A + G+ Y + ++ +G L P + IP I+ + + I + +
Sbjct: 302 VR-GASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFMYRA 360
Query: 359 E 359
E
Sbjct: 361 E 361
>gi|237745417|ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
gi|229376768|gb|EEO26859.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
Length = 382
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/382 (16%), Positives = 114/382 (29%), Gaps = 26/382 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RYFF +K+ ++ L+ + L DL + +G Y + V P
Sbjct: 1 MKILQRYFFSQIVKSVVFILVAFLGLFAFFDLISELSSVG-RGGYQLHHVFVYILLGFPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +++PF L+ I SE I R +S ++ +FT LV
Sbjct: 60 YIYELMPFAVLIGTIYAMALFASNSEFTIMRVSSLSTRDACWMLAKVGLVFLVFTFLVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-------FIGAKKILPENH 174
+ ++ + K W + + + K + +
Sbjct: 120 VLTPYTSRMASEFRNNLIGRNLSDKFRTGMWSKDTIRENGREGEIIGSRFMNIKTMRPDG 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---------------- 218
E +++ +++ A + V +
Sbjct: 180 TIEQIKLYEFNRELELVKTVTAQNGHYLGNHEWQLNGVVESLIKSSGKSKGKRFPDSAPV 239
Query: 219 -IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
++S L + D S S YE+ N + F+
Sbjct: 240 VDTEKRDSIRLVSDVTPDILSVISVDANKMSAYELAVYNRHL-VENKQDATSYQIAFWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
I+ P + M +A + RS + + GI G I + G P
Sbjct: 299 IIYPFSVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVAFILINNLFSHVGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A+IP +L + ++ L E
Sbjct: 359 LTAVIPSVLFLLSAVFALWWVE 380
>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
Length = 813
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/393 (13%), Positives = 111/393 (28%), Gaps = 39/393 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL Y + + T L ++ + E+ + + +P
Sbjct: 422 PLILDDYIMREFGATFALVLAAFSMVFLIFTFFELIGDIIRNR-IAFVTVGDYLLNLIPY 480
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P LV +V F +L +TSE +A G+S+++++ P +V + ++
Sbjct: 481 ILYNVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLVLTAVIACSLFAFDE 540
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW----------------------------- 152
+ L K +
Sbjct: 541 FYLPQANRRQEALRSVIKGKPAQTFLRPDRQWISGQTVLDPISLAQSRSWAPIAPAVVHI 600
Query: 153 --MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+ + F ++ ++ +
Sbjct: 601 GDTAKQPARIFYYQFFDPDHDAFANLTVFEFDPATFTLTRRIFAESAKWDSNVNQWIFEN 660
Query: 211 VVEYQYGRIPIDKNSTTL-----NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ D I + F+K Q SF E+ +S +S F
Sbjct: 661 GWSRTFSGEVADTYKPFTLANFPEIHEQPQYFKKEDRQSQQMSFGELSSYISDLRQSG-F 719
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ R Q + P + + M ++A +L + A I + + ++
Sbjct: 720 NTMRLSVQLNRKLAYPAITLVMAILAIPFALSSGKRGGVT-GFAIAILLAVVYLGVSSLF 778
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ G L P+ AA P +L LL+
Sbjct: 779 EAMGNVNTLPPMLAAWTPDLLFTFAGAYFLLRT 811
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 114/370 (30%), Gaps = 18/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L L + ++F L +I + + S+S A L A +P
Sbjct: 1 MRLLTRYILREVLSHALLGGVLFTFVLFTSRLGKILE-IVVRNSASLSDVARLIAYFLPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP LV ++ L SE+ RA G+ + + SI +
Sbjct: 60 ALIVTIPMAVLVGILLGLSRLAADSEITAMRASGMGALDFVRIVSLVSIGALALGLFNSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK---KILPENHIWED 178
+A + L K + + + + + + H++
Sbjct: 120 YLAPRSAANLLALENSLKYSQASFEVEPRVFDEDFKNIVLYVQDVRPGSGAALWRHVFVA 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG-- 236
+ K + A N + L ++Q ++ + + +
Sbjct: 180 DLTEPSAPKITTADQALVTSAGPGNLNLHLTDGAQHQISPTDANQYNISTFQVTDIPMQT 239
Query: 237 -------FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR----AETQFYFLIVIPLMLV 285
+ + S E+I++ + + H+ R + + P +
Sbjct: 240 GAQEDAHLSRSDTPILALSLPELIQRGNQAAAPGPKHDVRAARLYKIELNKRFSYPFACL 299
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ L+ + L R I F+ Y + ++ + G L PV +
Sbjct: 300 VLMLVGVPLGLSSKR-GGKSTGFVLTILLVFVYYFLSSVGVALANQGKLPPVLGVWGANL 358
Query: 346 LTISLSILIL 355
+ + L+L
Sbjct: 359 IFAAFGALLL 368
>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
Length = 366
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 3/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ Y K +L T L +I++ +D+ + P ++ + R P II
Sbjct: 11 TIAIYMAKMFLLRTFAILFALVIVLQALDILSESGAILATPGNGEAQVWRYVSLRAPQII 70
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF L+ I+ FF +N+ SE++ +A G+S Q+L P +V S + + + + I
Sbjct: 71 AFILPFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLSFAFNDRI 130
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ Q+ S + + + I + + N T
Sbjct: 131 VPRATAT-LSAWQKVDYGPIPIDSGDRSNVWVRDGDDLISVDLVQGRGANTQLGGVTLYD 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSE 242
+ A D ++ ++ + S + + + S
Sbjct: 190 RKGGGSLQAIVRAPRGRRMGDGWQIGPATRFEVASGKLTSIPSMIIGRGVTPEQLTLASV 249
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
SF + + ++ E + + P+ + M L+ A + +RS
Sbjct: 250 NADGLSFKGLSNAIDDLREAGRPTKTL-EGSLWHKLSAPMSAILMPLLGAVAAFGIARSG 308
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + G+ GF + + G G P AA P++L + +L + E+
Sbjct: 309 KLFVRAVIGMALGFAFFVADNFSMAMGDLGAYPPFLAAWAPILLFFLIGEAVLFRTEE 366
>gi|70728450|ref|YP_258199.1| hypothetical protein PFL_1068 [Pseudomonas fluorescens Pf-5]
gi|68342749|gb|AAY90355.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
Length = 353
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 125/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L + L + + + E Y++ A P
Sbjct: 1 MVK-LDRYIGSSVFMAILAVLGIILGLASLFAFIDEMGAVNET--YTVVDVMSYVALTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L SEL I RA G+S+ +++ + ++L + VLV
Sbjct: 58 RRVYEMLPMAGLIGCLIGLGSLASNSELTIMRAAGVSVGRIVWAVMKPMLVLMLVGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + E + +GD Q S W + + I + N + T
Sbjct: 118 EYVAPATETQAQASRALAQGSGDAQSSKHGLWHRQGDEFIHI-----NAVQPNGLLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A + D +L V + + S ++ +
Sbjct: 173 RYHFDDQRHMLSSSFARQARFHEDYWQLTDVTTTYFRDGHTEVISVPGERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 233 STVVMAPESLSISGLWGYIHYLADQG-LNNGRYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICAVAGVWLLRR 351
>gi|197119770|ref|YP_002140197.1| membrane protein [Geobacter bemidjiensis Bem]
gi|197089130|gb|ACH40401.1| membrane protein, YjgQ-related protein [Geobacter bemidjiensis Bem]
Length = 360
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 124/357 (34%), Gaps = 7/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + Y+K L + + V+D E ++ S A+ T++P
Sbjct: 1 MNILTRYIARAYVKMLSLCLGSFIAIYLVVDFMEKVSRFTRY-GASWKHLALFFITKIPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I P L+ ++ L+ TSEL R+ G+S++++ P +V S+L+ + + +
Sbjct: 60 MIIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + +
Sbjct: 120 FVLPKTYAQRTYIQEVLIQKKSPSAFFRQQNIWFREEGTVLRASLFEPARNELKGITLWE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGF 237
+ + R +ADLAI+ + V Q+ + + +K
Sbjct: 180 LQPGTGEPL-KRTEADLAILGAKGWMFRDAVVRQFRDGEVSSTQKYRELPVELQLKPADL 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S E+ + S + R TQ + I +P M + +L
Sbjct: 239 KTLGKFSDSMSLVELSRYCRKLRASG-YDPTRYVTQMHSRISMPFGCAVMAFLGIPFALR 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ V I GF+ + +++ S G+ G+L PV AA + +
Sbjct: 298 GGRSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFIFFVAGAWL 354
>gi|188993098|ref|YP_001905108.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris str. B100]
gi|167734858|emb|CAP53069.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris]
Length = 368
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 124/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +YS A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQ-GSYSFGHAIAFVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ VV LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---W 176
+ + L + D + W + + + G +++L
Sbjct: 123 ETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTALTL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +D K ++ A +A + + L++V + + + + +
Sbjct: 183 HDVRLYHLDAKGQMQQLTYAAVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLN 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S +++ + + + ++ E Q++ PL ++A+ L A
Sbjct: 243 PKALAAGLAKPRNLSVHDLGQSIEYRRRNG-LDASDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|323436074|ref|ZP_01050240.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
gi|321496389|gb|EAQ39255.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
Length = 358
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 121/358 (33%), Gaps = 9/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K Y+ T + L+ + + +++L E +++ A+
Sbjct: 1 MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKIL-ANEVPFGEVALYYLNFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S + L P+++G+ ++ ++
Sbjct: 60 FANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFTRFLRPYLIGATVVCAGAFVMGT 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A K + I ++ + + QI +I A P +FT
Sbjct: 120 YLAPRANKGYNEFIFEYLKKKKNDRDTRDVYRQIDAGD---YIYASSFNPRTKRGRNFTW 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + D KK + + G + I + +D
Sbjct: 177 EHFEGNKMTYKMSATQIRFNEEDTTYTLYGFKKRIIGEDGDVLIKQAKIDTTFAFDIDDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ + ++ + R E +P+ +T+IA +VS
Sbjct: 237 TPVEYIAETLNTPELREFIAKEKARGSSYISRYEVTLQKRYSLPVAAYILTIIAVAVSA- 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I +A+GI F+ + + + P+ A P IL L+ +L
Sbjct: 296 MKRRGGMGINLAFGIVLAFVFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAAYLL 353
>gi|118580062|ref|YP_901312.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502772|gb|ABK99254.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 359
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/355 (16%), Positives = 140/355 (39%), Gaps = 8/355 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY +L+ L + + V+D+ E + + + A A ++P +I
Sbjct: 3 IIDRYIAMTWLRLLLLCQGSFLSIYLVLDMMERIPRFLRVQGA-LVDIARFFAWKLPEMI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q F L+ ++ L R+SE+V R+ GIS+ ++ P ++ + + ++ I
Sbjct: 62 GQTAAFSVLMATLLTLGLLTRSSEIVAMRSCGISLPRISLPMLLLGGGVSLLLLVNAELI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + + + P + + +
Sbjct: 122 VPDSYERMSRIERVDIKKQAGSAVFKRNNIWFRSDNRIMQARL--FDPRSQVLRGVVVWS 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQK 239
+D+ + R DA+ A + + L+ V ++ + ++++ +K+D +
Sbjct: 180 LDQYTNPLSRLDAESAELRGESWLLRGVELKEFTAGEGVVVRKLPTRSIDLNLKVDDLRV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + SF ++ + + +++ T + PL + M ++ +L S
Sbjct: 240 LDKNADNLSFGKLREYADNLR-KGGYEDFKYRTMMHTKFAAPLSALVMVILGIPFALRGS 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + V + GF + + ++ S+G+SG+L P+ AA L I + +
Sbjct: 299 RSGGVAMGVGASVTIGFAYFVVNAVLLSYGRSGVLPPLVAAWGANFLFILGGLWL 353
>gi|116074701|ref|ZP_01471962.1| possible permease [Synechococcus sp. RS9916]
gi|116067923|gb|EAU73676.1| possible permease [Synechococcus sp. RS9916]
Length = 389
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/367 (10%), Positives = 109/367 (29%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + ++ + ++ + + + + + R+P +
Sbjct: 18 LLDRWLISELVGPLIFAIAAFTVVSLSVGVMFELVRKIVESGLPVLIALQVLLLRLPSFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL R++G++ +++ P + S+++ T + + I
Sbjct: 78 VISFPMATLMATLLAYSRLSANSELTALRSVGVTARRMIAPALALSLVMTTLTFVFNDVI 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----------NPQQDIFIGAKKILPEN 173
+ +Q+ + + + + +
Sbjct: 138 VPRANRNAEVTLQRALGKAIATEKGDDIVYSRFGRLAGADEGDRTRGLAQLFYAREFRKG 197
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLN 229
+ + D K + +
Sbjct: 198 TMQGVTLLDFSRVGFTQMLVADEAKWNDKEGKWEFLNGQSVTLTPEGGTITAQFDRYLYP 257
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ K + + + E ++ + R + +P+ +
Sbjct: 258 LSAAPVRIAKLPKDANNMTVLEAVEAEQLLRDAGDRKEARRLRVRIQEKFTLPMACLVFG 317
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ + + + + Y + S G G L P+ AA +PV++++
Sbjct: 318 LIGSSLGAKPNNRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWMPVLISL 377
Query: 349 SLSILIL 355
+ +L
Sbjct: 378 AGGWTLL 384
>gi|311103830|ref|YP_003976683.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
gi|310758519|gb|ADP13968.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
Length = 392
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 120/370 (32%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ L+ + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK--FSMMALLYMQALAIPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLRMLWIVTIPLMIGAGLLSEYVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + I L + T K
Sbjct: 124 AEIKSGEANLLFRGKAGGDRLNSGYWFKEPTADGGTRIINIGELKGDGQVSAVTLYEFKK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----------------KNSTTLN 229
+ A + + LK V E + + ++
Sbjct: 184 DQTLSALSTAPTGLFTQGDLLLKDVTETRLDDEAAEALANARPPKHPPATVVKLPERNID 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + +N R + + P L+ M
Sbjct: 244 TTLSAERLLARVLTPERMSIATLLDYVDYLR-NNQLQYGRQVVALWRKLAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + L +R V GI G + + + + G G AL P I +
Sbjct: 303 IAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPAWLTALGPNIGAMI 362
Query: 350 LSILILLQKE 359
+++ + E
Sbjct: 363 VALGAMGYME 372
>gi|284051460|ref|ZP_06381670.1| permease YjgP/YjgQ [Arthrospira platensis str. Paraca]
gi|291568812|dbj|BAI91084.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 392
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/370 (12%), Positives = 118/370 (31%), Gaps = 17/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + + ++ + + + + +S + ++P +
Sbjct: 21 VLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPDFM 80
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P ++ ++V+ L+ SEL+ R+ GIS+++L+ P ++ S ++ T I
Sbjct: 81 VLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFVVTGMTFAFNEII 140
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ---------------QDIFIGAKK 168
+ +Q+ + S + A
Sbjct: 141 VPAANFQATMTLQKALNEDALNISSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFADG 200
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ I + + + + + + V R + L
Sbjct: 201 KMSGVTILDRSRAGITQIISSRTAIWNPQESTWDFYNGTVYIVDPDGSYRNIARFDHKQL 260
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-RAETQFYFLIVIPLMLVAM 287
++ + + + + + S + + + +P + V
Sbjct: 261 HLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQQKYALPFVCVVF 320
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ +S+ R+N+ + F Y + I + G+ GI+ P AA +P +L
Sbjct: 321 GLLGSSLGSRPGRTNR-ATSFGISVMIIFAYYLLSFITGAIGQKGIISPFMAAWLPTMLG 379
Query: 348 ISLSILILLQ 357
+ +S +L +
Sbjct: 380 LGVSGFLLYR 389
>gi|194334630|ref|YP_002016490.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
gi|194312448|gb|ACF46843.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
Length = 387
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 131/357 (36%), Gaps = 5/357 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + Y + + T ++ L + L V+DL E ++ + I ++ + +P
Sbjct: 27 LLKRIDTYIARQFGLTCIFASLSFLALFVVLDLIENIDRFIDNS-VDIQHISLYYLSFLP 85
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ V L+ +SEL + G+S+ +++ PF S+++ +F ++
Sbjct: 86 EVFLATTPIAVLLSSLYVTGRLSSSSELSAIFSAGLSLRRIMLPFAFVSLVITVFNIVNA 145
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I ++++ + + + + + IG +
Sbjct: 146 GWILPETTAYKNTFMREFLGKNSEHLFPESRIHILESRDRILSIGKLEPNTGQAEKITLE 205
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
+ + I + + + + + + + TL + +
Sbjct: 206 TFDGSTITQRIDAEKMNYNADLDRWIMTGTRNRTFLPDTTLYRYDPGNDTLKLSLTASSL 265
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + + + + + + A + + I +P+ + + LI +S
Sbjct: 266 KELHLRPEEMNIVQHYRYIEEKKDAGFSNLQTAIIELHSRIALPITSLIIILIGVPLSTR 325
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS I I GF+ ++ + + G G+ PV A +P I+ + + I++
Sbjct: 326 KKRSG-LAIEAGISILIGFLYISLEKTIHAIGNGGMADPVLTAWLPNIIFLGVGIVL 381
>gi|291514726|emb|CBK63936.1| Predicted permeases [Alistipes shahii WAL 8301]
Length = 367
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 56/355 (15%), Positives = 118/355 (33%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +++V V D E + EL S +P
Sbjct: 8 FKILDRYILGKFLSTYFFAIAMIIVIVVVFDYVEKIDDFTELHAPLKSVILDYYLNFIPY 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++ ++ +
Sbjct: 68 FINQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLTLNL 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + QQ+ K D + QI G + +
Sbjct: 128 WLIPISQRHIVAFEQQYIKRKQNTKYDRHIYRQIEPGIFAYIRGYNDGARQASFFVLERY 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--GFQK 239
+ + + E+ + L+ I ++ +
Sbjct: 188 ESGTMTHSLEASDAKFNPETKRWTAPRYTKREFDSAGTETFEQFRNLDTLINLEATELGE 247
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ + + E+ + E + + PL +TLI S+S
Sbjct: 248 INDLIQTMNISELNAFLDQQRAKGSDSINLIEVEKHARYAYPLSTFILTLIGVSLSSRKV 307
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G F + F KSG L P A +P I+ + +++ +
Sbjct: 308 R-GGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLGIAVYL 361
>gi|312959169|ref|ZP_07773688.1| membrane protein [Pseudomonas fluorescens WH6]
gi|311286939|gb|EFQ65501.1| membrane protein [Pseudomonas fluorescens WH6]
Length = 359
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 119/361 (32%), Gaps = 8/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY L L L + L + + + + + Y++ P
Sbjct: 1 MVK-LDRYIGSSVLIAILAVLGIIIGLASLFAMVDEMKSINDT--YTVWNVLNYVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L SEL I RA G+SI +++ + +LL + +VL+
Sbjct: 58 RRLYEMMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMVCSVLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI----LPENHIW 176
+A E + +GD Q + W + + I +
Sbjct: 118 EYVAPPAEATAQANRALAQGSGDAQSAKHGLWHRQGDEFIHINAVQPGGLLIGVTRYRFD 177
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++ ++ + + Q I+ S I +K +
Sbjct: 178 KERHMLSSSFAKSAQYSNEKWQLTDITTTYFRNVGQGTQASTEVINVPSEEWGISLKPEL 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S + + + +N R F+ ++ P++ A+ L+A S
Sbjct: 238 LNTVVMIPESLPISGLWSYIHYLKDQG-LNNGRYWLAFWVKVLQPVVTAALVLMAISFVF 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF+ ++ P+ A L+P + +L
Sbjct: 297 GPLRSVTLGQRVFTGVLVGFIFQIAQNLLGPLSLVFGFSPLFAVLVPTTICALAGFWLLR 356
Query: 357 Q 357
+
Sbjct: 357 R 357
>gi|58580459|ref|YP_199475.1| hypothetical protein XOO0836 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425053|gb|AAW74090.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 396
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 121/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +Y+ A VP
Sbjct: 37 DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQ-GSYTFGHAVAYVAYTVPRRAYT 95
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 96 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 155
Query: 126 SGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + + + G +K+L D
Sbjct: 156 WAQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRL 215
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 216 YHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 275
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + +++ E Q++ PL ++A+ + A S
Sbjct: 276 AGLAKPRNLSAHDLEQSIEYRSRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 334
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 335 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 394
>gi|21230126|ref|NP_636043.1| hypothetical protein XCC0651 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769883|ref|YP_244645.1| hypothetical protein XC_3583 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111656|gb|AAM39967.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575215|gb|AAY50625.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 368
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 122/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +YS A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQ-GSYSFGHAIAFVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ VV LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---W 176
+ + L + D + W + + + G +++L
Sbjct: 123 ETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTALTL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +D ++ A +A + L++V + + + + +
Sbjct: 183 HDVRLYHLDANGQMQQLTYAAVAEHREGRWTLRQVRRDTFQARSVQRETFPELPWQSQLN 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S +++ + + + ++ E Q++ PL ++A+ L A
Sbjct: 243 PKALAAGLAKPRNLSVHDLGQSIEYRRRNG-LDASDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|77457218|ref|YP_346723.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
gi|77381221|gb|ABA72734.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens Pf0-1]
Length = 353
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 126/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L + L + + + + Y++ P
Sbjct: 1 MVK-LDRYIGSSVFIAIIAVLAIILGLATLFAFIDEMGDVSDT--YTLVDVLSFVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P L+ ++ +L +SEL + RA G+SI +++ + ++L + VL+
Sbjct: 58 RRLYDMLPMAALIGCLIGLGSLASSSELTVMRAAGVSIGRIVWAVMKPMLVLMLAGVLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + E + + +GD Q + W + + I + N T
Sbjct: 118 EYVAPATESMAQANRSLAQGSGDAQSAKHGMWHRQGDEFIHI-----NSVQPNGRLYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
DK+ ++ A A D +L V ++ + +T ++ +
Sbjct: 173 RYHFDKERHLLSSSFAKRAEFDTDHWQLTDVTTTKFHERSTEVVNTPVERWDVSLSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + + N R F+ ++ PL+ A+ L+A S
Sbjct: 233 STVVMAPESLSITGLWGYIHYLADQG-LSNGRYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF + ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIVQDLLGPSSLVFGFSPLFAVLVPAGVCALAGVWLLRR 351
>gi|313674434|ref|YP_004052430.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
gi|312941132|gb|ADR20322.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
Length = 357
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 113/353 (32%), Gaps = 2/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L T ++ +L + +V VID E + E N + +P
Sbjct: 1 MKILDKYILKKFLSTFVFVVLIILAIVTVIDYTEKNDDFME-HNLGLIDVLPYYGAFIPW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I I P + + V + +E+V A G+S +LL P+++G+ L+ + + +
Sbjct: 60 IGNLITPITIFIAAVFVTSKMAGHTEIVAMLASGMSFRRLLVPYMIGAGLVALSSFYLNA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I + I + + +
Sbjct: 120 YVIPDANKTRIAFETAYIKKPFYFTERDIHLKIAPETYAYMESYNNQRDVGYRFTLELIE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K+ R + D A + + I F
Sbjct: 180 DKNLKEKLSARRIEWDSAQSNWKVKDWTLRKFDGLTETYSEGKELDTVLNITPKDFGNTY 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ +S + + + Y + P + +T I +S + R
Sbjct: 240 GLQETLTLTELNDYISLLKERGADNVKIYLIERYIRFMAPFAAIILTFIGVILSSKKKR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+A G F+ + K+ ++ + P+ A +P I + +++
Sbjct: 299 GGTGFQIALGFVIAFIFIIFFILSKAIAENSTMNPILAVWLPNITFSIVGLIL 351
>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
Length = 360
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 191/359 (53%), Gaps = 3/359 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 4 TLGRYFFFRYVAITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAMAISGLRMPMIM 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V +INP+
Sbjct: 64 LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVVSVGIINPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + + Q + S D PW++ D IGA+ IL + D
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMSDAVFF 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+D++ I RKDA A + + +L+ V ++ G I N + +K + Q+
Sbjct: 184 ILDQQGNIAERKDAVRAYLRDGYWELQDVKTFRNGVIQSAAND-RVPTNLKPEFVQERLA 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + FY++ K+ + + N QF L+ +P +LVAMTLIAA+VS+ F+R
Sbjct: 243 RPETIPFYDLPGKIEVARSFGLKANA-FAMQFDSLVALPFLLVAMTLIAATVSMRFARMG 301
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + LL KEDG
Sbjct: 302 QSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAVAAWVPVVVAMFFGVTFLLYKEDG 360
>gi|222054622|ref|YP_002536984.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563911|gb|ACM19883.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 357
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 134/362 (37%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R+ Y + L + + V+D E + + + A+ TR+P
Sbjct: 1 MKIFNRFVAAAYARILCLCLGTFIAIFLVVDFLEKIGRFA---GANPAYIALFFLTRIPE 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I Q L+ ++ + +SEL R G+S+ ++ P +V + + I + +
Sbjct: 58 VICQTSAMAVLMATLLTLGMFSMSSELTAMRGCGLSLGRIAMPILVIAFSVSILNLAINE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G + + + M I + + + A P + + T
Sbjct: 118 YVLPRCIVQGQYIREVLIEKKSPNLF--FRQMNIWHRDDNFILKANLFDPASGQLKGITV 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD----GF 237
+ + R DA A + L VV ++ I K S ++P+ ++
Sbjct: 176 WRMGAGMQPEQRLDAATAKLDAGGWLLTDVVAREFSESNIIKTSEVASMPVPLNLRATDL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + E+ + R Q + I + + M + ++
Sbjct: 236 KVMRKFSDNMGIRELAAYCEKLR-KGGYDPTRYLAQMHGRISLAFAPLVMAFLGVPFAVR 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SRS+ + ++ + GF + + +I+ SFG++G+L PV +A + + + I L+
Sbjct: 295 GSRSSGIALGISASLGIGFGFFVLNSIVLSFGQAGVLSPVISAWSTNGIFLMIGIWFALK 354
Query: 358 KE 359
E
Sbjct: 355 AE 356
>gi|209526011|ref|ZP_03274544.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
gi|209493537|gb|EDZ93859.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
Length = 392
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 47/373 (12%), Positives = 115/373 (30%), Gaps = 17/373 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + + ++ + + + + +S + ++P +
Sbjct: 21 VLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPDFM 80
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P ++ ++V+ L+ SEL+ R+ GIS+++L+ P ++ S + T I
Sbjct: 81 VLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFFVTGMTFAFNEII 140
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ---------------QDIFIGAKK 168
+ +Q+ + + A
Sbjct: 141 VPAANFQATITLQKALNEDALNIRSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFADG 200
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ I + + + + + + + V R + L
Sbjct: 201 KMSGVTILDRSRAGITQIISSRTAIWNPEESTWDFYNGTVYIVDPDGSYRNIARFDHKQL 260
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-RAETQFYFLIVIPLMLVAM 287
+ + + + + + S + + + +P + V
Sbjct: 261 YLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQQKYALPFVCVVF 320
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ +S+ R+ + F Y + I + G+ GIL P AA +P +L
Sbjct: 321 GLLGSSLGSRPGRT-NRATSFGISVMIIFAYYLLSFITGAMGQKGILSPFMAAWLPTMLG 379
Query: 348 ISLSILILLQKED 360
+ +S +L + D
Sbjct: 380 LGVSGFLLYRSAD 392
>gi|254410176|ref|ZP_05023956.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
7420]
gi|196183212|gb|EDX78196.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
7420]
Length = 380
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 122/361 (33%), Gaps = 8/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L+ + + I + + + +P +
Sbjct: 18 VMDRYIITELIPPFLFGMGMFSSVGVTIGSLFDLMRRAVDEGLPATLVLKVLLLSLPQFM 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ R+ G+SI++L+ P ++ S+++ T +
Sbjct: 78 AYAFPTSVLLATLLTYSRLSSDSELIALRSCGVSIYRLVLPALLLSLVVTGITFGFNEYV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + + + + + + T +
Sbjct: 138 VPASNYQATITLEKALGEEKPTFKERNIFYREYAEDKTLKRLFYAQNFDGERMKGLTILD 197
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLNIPIKMDGF 237
+++ D+ + + Y R + L +P
Sbjct: 198 WSQQSLNQIVTADSAIWNVAQSTWDFYNGTIYLVSPDASYRNIVRFEHQQLQLPRIPLDL 257
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + +++ +S + R + + +P V L+ S+
Sbjct: 258 ARKDRDYDEMNITQARERLELERQSGDEEDIRKLKIRISQKFALPFACVVFGLVGGSLGN 317
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R+++ + F Y ++ I + G S L P+ +A +P ++ ++ +L+
Sbjct: 318 QPQRTSK-ATGFGISVLVIFAYYMLMAIGDALGLSNYLPPLISAWLPNLMGFAVGGFLLI 376
Query: 357 Q 357
+
Sbjct: 377 R 377
>gi|289663726|ref|ZP_06485307.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289668603|ref|ZP_06489678.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 368
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +Y+ A VP
Sbjct: 9 DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + N + G +K+L D
Sbjct: 128 WAQNQADTLKASARYNSDMASSRYSGLWAREGNTFLNALSGEEKLLDGGGTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YHLDPSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + ++ E Q++ P+ ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRRRNG-LDARDYEDQYWSRWFYPVNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|254424599|ref|ZP_05038317.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
gi|196192088|gb|EDX87052.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
Length = 397
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 117/359 (32%), Gaps = 17/359 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K L+ + + I + S + + +P
Sbjct: 25 IMDRYIAKELTLPFLFGVGAFSSIAVSIGALFELIRKVADAGLSATLAFEIFLLSLPTFT 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + + SEL+ R G+SI +++ P V+ S+L+ + V I
Sbjct: 85 VLAFPMSTLLATMMTYSRFSSDSELIAMRGCGVSINRIVAPAVILSLLVTGLSFSVNEII 144
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----------QQDIFIGAKKILPEN 173
A + + L+ + D+ + Q P + +
Sbjct: 145 APASTERAALLLARALDDEKPPFREGNIVFQQQEPAADGSGDELVRFFYARNFDGTTMRD 204
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTL 228
DF+ + K I DA + + Y R I + L
Sbjct: 205 ITVVDFSQEDSEDGLKQIVSADAATWDFTRNLWEFTNGTIYAVSPTGSFRQIIRFDKQDL 264
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ-FYFLIVIPLMLVAM 287
+P +++ + E + ++ ++ R IP V
Sbjct: 265 QLPRTPLDLANRTKKQEEMNIAETKEYLTILQQTGDEKAVRKLAVAIQRKYAIPFACVVF 324
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
L+ A+V + R+ + + F Y + I + G+SG++ P A +P+ +
Sbjct: 325 GLVGAAVGVRPQRTGK-ATSFGISVVIIFGYYLLSFITSAMGESGVITPFLAGWVPLFI 382
>gi|148556807|ref|YP_001264389.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
gi|148501997|gb|ABQ70251.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
Length = 364
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 67/357 (18%), Positives = 127/357 (35%), Gaps = 2/357 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ Y + +L L +I++ +DL + P ++ + R P II
Sbjct: 10 TMTLYMARMFLVRFAAVLAALVIVLMALDLLGESGDILAYPGNGDAQLWLYVTLRTPQII 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +PF L+ ++ F LN+ SE++ +A GIS Q+L P VV S+ +GI + +
Sbjct: 70 ARFLPFAALLATLITFVTLNQNSEIISMKAAGISAHQILAPLVVASLGVGIVSFTFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ Q + I+P + + + I A + + T
Sbjct: 130 VARATAT-LTAWQDADYGPIPRDRGIVPNIWVRDGDDLIHATAVRGRGAQARLDSVTIYD 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D I K + + + D F +
Sbjct: 189 RDGGRLISIIKGERAVQAAGGWRITGASRFDVAKGVTLRLAGFDFAKGVTADRFTLANVD 248
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
AS+S ++ ++ + + ++ + PL V M L+AA + +RS
Sbjct: 249 PASKSIVQLRTAIADLDAAGRPTGPLRAGLWH-KLSGPLSAVLMPLLAAVAAFGLARSGH 307
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I G+ GF + + G G P AA P +L + + +L++ E+
Sbjct: 308 LFIRAVIGMALGFAYFVADNFALAMGNLGAYPPFLAAWAPFLLFLLIGETVLIRTEE 364
>gi|16332044|ref|NP_442772.1| hypothetical protein sll0496 [Synechocystis sp. PCC 6803]
gi|1001356|dbj|BAA10843.1| sll0496 [Synechocystis sp. PCC 6803]
Length = 394
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 119/371 (32%), Gaps = 16/371 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + L+ + L I N +++ A + +VP +
Sbjct: 25 DRYVARQLIPPFLFSVGVVASLGLAIGNLSDLGNKIVEKNLPVAKAAEVLLLKVPEFLAY 84
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P ++ ++ F L+ E++ R+ G+S+++L+ P VV S+L+ + ++ +
Sbjct: 85 SLPVAVMLATMMTFGRLSGDCEIIAIRSCGVSLYRLILPAVVLSLLVTGWAFVLTEWVVP 144
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ--------------DIFIGAKKILP 171
++ + D + + + K +
Sbjct: 145 VANYRATSILIESIDEEHPFWQNRDVFYPEFEEIKLDNGQTARRLKSLVYAEKFDGKEMQ 204
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + + + D + ++ E + + + + + +P
Sbjct: 205 NLTVLQWTENHLKHIVLSDNATWNNDNKRWDFFHGTVYRLTETEDYQEAVPFTNKQIALP 264
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLI 290
F + + E + + + + + P + + ++
Sbjct: 265 QSAFDFARQGRDPYEMTIAEAQDYIKILKLIGDEKKTQFFQVRTEQKLAFPFVCIVFAVV 324
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+++ R ++ I F Y + S G G++ P AA +P + + +
Sbjct: 325 GSAIGARPQRISR-ATGFGLTIVIIFAYYILGFFSGSLGIVGLISPTLAAWLPNFVGLGV 383
Query: 351 SILILLQKEDG 361
I +L + G
Sbjct: 384 GIWLLYEFNQG 394
>gi|260221416|emb|CBA29957.1| hypothetical protein Csp_A14750 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 384
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 124/372 (33%), Gaps = 17/372 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATR 58
+ L + + + LG M L F D+ E + + Y + + + A
Sbjct: 16 LMKTLRKLLYGEVITAVTLVTLGFMALFFFFDVVEELQSVSRIASSGYQVPQALIYVALM 75
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + ++ P L+ I V L R+SE I R G+ W+ L + + +FT
Sbjct: 76 IPAHVYELFPITVLIGTIFVMARLARSSEFTILRTSGLGPWRALRTLLALGLGFVLFTFA 135
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V + +A +K L ++ G W++ + + + + +
Sbjct: 136 VGDYVAPLADKTAQLLKSRF--QGKISVGKTGAWLKERQAYGSYSVNVGALSSDATLKDV 193
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--------KNSTTLNI 230
++ + + ++ L + V ++ P S
Sbjct: 194 RVYEFDNQGKVVSLTEAKAGTFGDDESWMLTQGVRTEFTSGPDQVSKVDRVAFESFRWPT 253
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I + + ++ + + N + + E QF+ + PL + M ++
Sbjct: 254 QISAEMVAAAVLRPERMGTIDLFQYIRHLNANGQ-SAQKYEIQFWKKVFYPLSCLVMVVL 312
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + RS G+ +G + ++ G P A +P ++
Sbjct: 313 SLPFAYLHFRSGSIAGYTFGGVMAGISFVLLNNVLNDLGNLQGWQPWITAALPGLIYSFF 372
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 373 SLAAFTWLVLRR 384
>gi|313894646|ref|ZP_07828209.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440836|gb|EFR59265.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
Length = 363
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 131/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALMISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + ++ N Q + I ++ + + AK E T
Sbjct: 121 FVVPRTNHMYQTIVREEIMKNATPQTQNHIVLKAMNGDELGTLMYAKSYNAETKQLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDVSAGDGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|218961269|ref|YP_001741044.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
gi|167729926|emb|CAO80838.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
Length = 362
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 131/363 (36%), Gaps = 7/363 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y + +L+T L L + + VID+ + ++ + + + R+P
Sbjct: 1 MRILDKYIIREFLRTYLIIFLSFVAIFVVIDVIDNLPRLI-RNGATAQQATIYYLMRLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ + + L++ +E + RA GISI + + P +++ I +
Sbjct: 60 LLVLTSPVTVLLTGLFMMSALSKHNESIAIRAAGISIKRAMLPLFGIGLIISIAVAVFGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + + D + +N++ +
Sbjct: 120 YVVPWAETTKNYVYNVQIKGQQPDDQMLKARIHYQGKANDFYYFGFFDGYKNNLKIIDLT 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDG 236
K +I A A + LK ++ + + + ++
Sbjct: 180 RIDFKTKQITEHITASSADWNGSRWILKDCDLRRFANGKQVFMAHYPQTDLVILDVQPQD 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + S++ S +F+++ + + K + R + I PL + + ++
Sbjct: 240 FIRISQKTLSLNFWQLKEYIGRMKKLGD-NAAREIVDLHMKISFPLTNLIVIFFFIPIAT 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS I+ G+ F+ ++ + +S G + I+ P AA P I L + L
Sbjct: 299 SNIRSKGRGWIIMLGLVVCFIYLIVVRVCQSLGYNSIINPFWAAWFPNIFFTLLGLGFLH 358
Query: 357 QKE 359
+ E
Sbjct: 359 KAE 361
>gi|291614864|ref|YP_003525021.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
gi|291584976|gb|ADE12634.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
Length = 358
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 132/362 (36%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + ++L ++DL N MG +Y + + +P
Sbjct: 1 MRLLTRYLRREIYASVALVFAALIMLFALLDLVNELNSMG-RGDYRLGYVLLFVTLTIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++ P L+ I + +SEL + R+ G+S+ Q++ V + L + L
Sbjct: 60 HIYELFPVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGE 119
Query: 122 PIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E++ +L + ++ ++ W + FI + +LP+ + +
Sbjct: 120 VIAPPSERMAQELRMKAQNLKVSVKEFRSGVW----AKDERSFINVRSMLPDTSLLDVSI 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
+ + + D+ +L V + + + ++ + + D
Sbjct: 176 YEFDATYHLRSITSAEHASYLDEDRWQLDGVRQTLFSKQGATTDNRPRAEWHTSLNPDIL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + + + + N R E + +V PL ++ M L+A S
Sbjct: 236 SVLLVVPEQMSAWNLYQYTMHLRE-NHQKTSRYEIAMWNKLVYPLAVLVMMLLALPFSAY 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + GI G + + + + G P+ +A L ++L++ +L +
Sbjct: 295 QRREGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGMLWR 354
Query: 358 KE 359
E
Sbjct: 355 TE 356
>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
Length = 782
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/368 (16%), Positives = 116/368 (31%), Gaps = 14/368 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + +L + L ++L V E+ + + +P
Sbjct: 416 PLLLDDYVMREFLTSLALVLSSFLVLSVVFSFFELIGDIIRNR-TPLVTVGGYLLNLIPY 474
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + P L+ +V LNR+SEL +A G+S+++++ P V + +L + +
Sbjct: 475 MIYSLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFVLAAVLAVGLFAFDD 534
Query: 122 PIATSGEKIGIDLIQQWKDN------GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ L + K +K S + +
Sbjct: 535 LYLPQANRRQEALRSEIKGKPAQTFLRPDRKWISGQEANGSPTRIFYYQFFDSDKDVFAN 594
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNI 230
F + + + +++ + + ST I
Sbjct: 595 LTVFEFQPGSFLLQRRIFATSARWNPQVQQWEMENGWQRTFNHESIATYQPFATSTFPEI 654
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
F+K S S+ ++ + +S F R Q I PLM + M +
Sbjct: 655 HELPAYFKKESRPSQEMSYGDLSAYIHDLKQSG-FDTMRLRVQLNHKIAYPLMTLVMAIF 713
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ + A I I ++ +S G L P+ AA +L
Sbjct: 714 AVPFAMMMGKRGSLAGY-ATAIGMAIAYQLIASVFESMGNVNALPPMLAAWSVDLLFALG 772
Query: 351 SILILLQK 358
+LL+
Sbjct: 773 GTYLLLRT 780
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 102/360 (28%), Gaps = 7/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + + + ++F+ ++ + + + + +P
Sbjct: 1 MRILTRYILREVVSHAMLGGALFTFVLFMQRDLGHILELAVRGSATPNDVGRILLYSLPA 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP LV ++ L+ SE+ RA G + Q + + +++ + ++
Sbjct: 61 TLTFTIPMTVLVGILLGLGRLSADSEVTAMRASGFGVMQFVRVVSMSTVVALLVGLVNSL 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP----ENHIWE 177
IA + L K + + + + + ++
Sbjct: 121 YIAPKSTASLLRLENDLKSSQASFEVQPRVFYEDFKNYVLYVQDTQPSQGATIWKHVFLA 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T A + P N +T
Sbjct: 181 DLTQPATPYITTANQAVVAVGKQQTLRLHFMDGSTHQISPTDPNQYNISTFAENDVPMQA 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF--YFLIVIPLMLVAMTLIAASVS 295
+ + +RS + + R + P+ V + L+ +
Sbjct: 241 GQQEDIKLTRSDAPMAAMTAGQLWQAQPGPQRRAAMIELNRRLSYPIACVVLMLVGVPLG 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L SR I F+ Y + ++ + K G L PV +L +L+L
Sbjct: 301 LS-SRRGGKSTGFVLTIVLVFLYYFLSSVGVALAKQGKLHPVIGVWAANVLFGFAGVLLL 359
>gi|270157966|ref|ZP_06186623.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
gi|289163767|ref|YP_003453905.1| membrane protein [Legionella longbeachae NSW150]
gi|269989991|gb|EEZ96245.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
gi|288856940|emb|CBJ10754.1| putative membrane protein [Legionella longbeachae NSW150]
Length = 356
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 125/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + + L + L I + + +G + +Y I + ++P
Sbjct: 3 MKILDRYIAKTVIGSIGLVTLMLIGLQIFILFVDQISDLGRV-DYGIVQATFFVMLQMPY 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P +L+ ++ L SELVI RA G+SI Q+ + S+LL IF ++
Sbjct: 62 QVYLFFPMASLLGTLIGLGILANHSELVIMRASGMSIGQITVAVLKASVLLIIFVTVLGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ D G ++ W++ +N + ++ N++ +
Sbjct: 122 TLVPYLSHYANDYKTAAISGGQTLRTSKGFWLRYNNDFISV-----GVVLSNNVLNNIYQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQ 238
D ++ + + V + ++G S ++ +K
Sbjct: 177 FRFDNQHHLKMSRFIREVRHTPTGWIAYDVQQTEFGGDQTKAQAFASLPWDVSVKPKILT 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + E+ + + N + + + F ++ P + M +++
Sbjct: 237 ISSIDPDEMNLRELNRYIRAQK-LNHQNIHNYQFAFLQRLIQPFTTMVMMILSIPFIFGP 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G GF + + L P +AL P ++ L + ++ +
Sbjct: 296 LRSTTMGSKLLVGAAVGFSFHILNRFFGPLSTVFQLPPELSALGPTVIFALLGLYLMKR 354
>gi|294012649|ref|YP_003546109.1| putative permease [Sphingobium japonicum UT26S]
gi|292675979|dbj|BAI97497.1| putative permease [Sphingobium japonicum UT26S]
Length = 367
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 118/357 (33%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + +L T L + ++ +DL + ++ A R P I+
Sbjct: 12 LGWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQIVA 71
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +PF L+ +++ +LN+ SE++ +A G+S Q+L P + ++ + + + I
Sbjct: 72 RFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNERIV 131
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + I
Sbjct: 132 ARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFNRI 191
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQ 243
+ I + L+ ++ R + + I+ D F
Sbjct: 192 NNTLTTIVQAPRGHYDASTRSWVLEDARQFDVARGTERQIGTVRFGRDIRPDQFTLAKVD 251
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F ++ +S + + E + + PL + M ++ + + +RS Q
Sbjct: 252 PDALTFSQLQAAISDLHDAGRP-TAELEGSLWHKLSGPLSALLMPILGSVAAFGLARSGQ 310
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G P AA P +L + + +L + E+
Sbjct: 311 LFVRAVLGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFRTEE 367
>gi|121591646|ref|ZP_01678888.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121546494|gb|EAX56709.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
Length = 338
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 116/340 (34%), Gaps = 3/340 (0%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L+ + L +I E ++GE +Y + + + +P ++ P L+ ++
Sbjct: 1 MVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIPRDVEMFFPMAALLGALIG 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +SELV+ +A G S + + +I L I L+ A +K+ D+
Sbjct: 60 LGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQKMARDMRAFA 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
G W + +N I + L ++W + +
Sbjct: 120 TSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDENKKLSTVIFSEQVDYVAN 179
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
L ++V + D + + S + + +
Sbjct: 180 NEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSLTGLSDYVHY 238
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
++ + R E + + P+ + M L+A S RS + G+ +GF
Sbjct: 239 LK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFSF 297
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
Y L P+ AL P ++ +++++ +L +K
Sbjct: 298 YISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 337
>gi|89075942|ref|ZP_01162317.1| putative permease [Photobacterium sp. SKA34]
gi|89048383|gb|EAR53961.1| putative permease [Photobacterium sp. SKA34]
Length = 338
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/338 (16%), Positives = 107/338 (31%), Gaps = 2/338 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + N + + F
Sbjct: 120 QWGAPQAQKMAREYRSAWIYGGSVIAAQSGVWAKNDNSFIYMGRVHDLNKVDVVNIWQFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R D A + + S + D
Sbjct: 180 NKGQLEDVTSAKRASYDKATGWTMHDVTITDMIGSSQLTNSQIASKHWETTLTPDKLAVV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +++ ++ R + F+ + P+ + M L+A S R
Sbjct: 240 TVKPEELSLSGLYHYVNYLKET-KQDASRYDLAFWRKALQPISIAVMMLLALSFVFGPLR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
S V G+ GF Y + L P+
Sbjct: 299 SVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIL 336
>gi|15677421|ref|NP_274577.1| hypothetical protein NMB1571 [Neisseria meningitidis MC58]
gi|304387020|ref|ZP_07369275.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|7226818|gb|AAF41924.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|304338892|gb|EFM04991.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|308389705|gb|ADO32025.1| hypothetical protein NMBB_1800 [Neisseria meningitidis alpha710]
gi|316983819|gb|EFV62799.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325130630|gb|EGC53373.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
OX99.30304]
gi|325134626|gb|EGC57266.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
gi|325140779|gb|EGC63293.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
gi|325199830|gb|ADY95285.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
gi|325201753|gb|ADY97207.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240149]
gi|325204535|gb|ADY99988.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240355]
gi|325205694|gb|ADZ01147.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M04-240196]
gi|325208503|gb|ADZ03955.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
NZ-05/33]
Length = 356
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 136/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++IP L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELIPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|288799848|ref|ZP_06405307.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
gi|288333096|gb|EFC71575.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
Length = 377
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 113/354 (31%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 18 KILDWYIIKKFIGTYIFSILLIISVAIVFDVNENLARFAQYHAPLKAIVFDYYANFVPYF 77
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ L+ + + + +
Sbjct: 78 ANLFSPLFVFIAVIFFTSKLAGNSEIISILAAGVSFKRLMRPYMISCALISMLSYYLSSN 137
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K+ +D + I D +
Sbjct: 138 VIPHGTVIRQNFEALYKNKTKNTSADNVLLQVDKGVIAYIQHYDNNSKRGYGFSLDKFNN 197
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D + + + + I ++
Sbjct: 198 KKLVSHLTATEIQYDTISDTKYHWTISNWKTRKLEGLKEKITTGAQRDTIIMMEPTDLVY 257
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + ++ +S + + + +++ I +T I S+S
Sbjct: 258 SKGQQETFTSAQLQDYISKQIDRGSSNVVQYQVEYHKRIASSFASFILTTIGLSLSSR-K 316
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + P+ AA IP I+ ++
Sbjct: 317 RKGGMGLYMGIGLALSFGYIMLQTVSATFAINANTPPIIAAWIPNIIFSLVAYF 370
>gi|260754017|ref|YP_003226910.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553380|gb|ACV76326.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 364
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/367 (14%), Positives = 125/367 (34%), Gaps = 10/367 (2%)
Query: 1 MPGILW------RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL 54
M L+ Y K ++ L + ++ +D+ ++ + +
Sbjct: 1 MIKRLFASRQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHY 60
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G
Sbjct: 61 VLLRTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGC 120
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + + + T + + + + I + + +N
Sbjct: 121 VSFVFNDHLVTRATAKLDAWQA-VDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNV 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIK 233
T + ++ AD L KV + + + S +N +
Sbjct: 180 RLSGITVYN-RSQKTLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKSVLDINTDLP 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F + + + + + + + + + + M ++ +
Sbjct: 239 PERFTLADVKADEMEVVPLYRAIKALDAAGRPTDELKASLIH-RFTGAFAAILMPILGSV 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+RS + + + G+ GF + + G G P+ A+ P IL + +
Sbjct: 298 AGFGLARSGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEA 357
Query: 354 ILLQKED 360
+L++ E+
Sbjct: 358 VLIRTEE 364
>gi|149186432|ref|ZP_01864745.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830021|gb|EDL48459.1| predicted permease [Erythrobacter sp. SD-21]
Length = 365
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 133/358 (37%), Gaps = 3/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY K ++ L L+ ++++ ++DL ++ + A+ RVP +I
Sbjct: 10 TLTRYLAKLFVVRILAVLVMLVLVLMMLDLLSNSGKILAVEGNGQGELLKYASLRVPQLI 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ ++ LN+ SE++ +A G+S Q+L P ++ ++++G + + +
Sbjct: 70 QRFLPYSVLLATLISLVTLNQNSEVIAMKAAGLSAHQVLAPLLLTALVVGGVSFVFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
T ++ S D T
Sbjct: 130 VTRATATLKAWDAADWGPVPEESSVRANVYLADGSNVLTAAQLTGSGDAI-RMRDVTWYR 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSE 242
+ I+ + DA A +L+ + ++ +S + + D
Sbjct: 189 RSPEGTIVEQVDAARATYAGPGWRLENIERFEVAAAASSTGDSLVVGEGLTPDQIDLAKI 248
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F+E+ +++ + +++ + PL M L+ A + +RS
Sbjct: 249 DPDAVPFWELGERIDAFEDAGRR-TGEMRAKWWHKLSGPLSSFLMPLLGAVAAFGLARSG 307
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q + G+ GF + + + G G P+ AA P L + +L++ E+
Sbjct: 308 QLFVRALIGMALGFAYFVVDNAALAMGNFGGYPPLLAAWAPFFLFALIGETVLIRTEE 365
>gi|218768539|ref|YP_002343051.1| hypothetical protein NMA1760 [Neisseria meningitidis Z2491]
gi|121052547|emb|CAM08887.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis Z2491]
gi|319410788|emb|CBY91173.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis WUE 2594]
gi|325128630|gb|EGC51499.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
gi|325144869|gb|EGC67157.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240013]
Length = 356
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 136/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|161870426|ref|YP_001599598.1| hypothetical protein NMCC_1474 [Neisseria meningitidis 053442]
gi|254805326|ref|YP_003083547.1| putative permease [Neisseria meningitidis alpha14]
gi|161595979|gb|ABX73639.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 053442]
gi|254668868|emb|CBA06970.1| putative permease [Neisseria meningitidis alpha14]
Length = 356
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 136/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGIWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|257095655|ref|YP_003169296.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048179|gb|ACV37367.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 357
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 121/362 (33%), Gaps = 11/362 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + + L LLG + L D+ +G+ Y + R+P
Sbjct: 1 MKLYRRYVGREVMGAVLLVLLGFLALFAFFDMLGEIRNVGQ-GGYQLHHAFAFVLLRIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ + L R SE+ + R G+S LL + +L + T L+
Sbjct: 60 RVYELMPIAVLIGTLYALSTLARHSEITVLRVSGLSSGGLLTVLFQVAGVLAVLTFLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ L + + Q W++ ++ +I+ +
Sbjct: 120 YVAPPSERAAFQLRSKERTGMVGQDLRSGLWVKDERSFINV-----RIVLPDTRLRGIRI 174
Query: 182 ITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
D+ K+ +A D +L VV+ + S + D
Sbjct: 175 FEFDEDAKLRSMTEAAEGEYVVPDSWRLTNVVQTVLEGGRAEVRSVPDMQWRSALNPDIL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + N R + F+ ++ PL + M +A
Sbjct: 235 AVLLVSPDRMSLRHLSAYTKHLAD-NHQTTNRYDIAFWKKVIYPLAGLVMVALALPFGGA 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR + + G+ G + + + + + G P+ +A P IL + + ++
Sbjct: 294 HSRVEGVGLKIFVGVMIGTLFHMLNGLFSNLGAINHWSPLLSAATPSILFLLAATAMIWW 353
Query: 358 KE 359
E
Sbjct: 354 VE 355
>gi|218440672|ref|YP_002379001.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
gi|218173400|gb|ACK72133.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
Length = 388
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/372 (16%), Positives = 126/372 (33%), Gaps = 16/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ RY F L L+ + L I + S++ + + ++P
Sbjct: 16 PSIVDRYLFMELLIPFLFGMGLFTSLGIAIGTLFDLVRKVTESGLSLTVALQILSLKMPE 75
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P L+ ++ + L SEL+ R+IG+S ++LL P ++ S+++ T +
Sbjct: 76 FIVLAFPMSILLATLMAYSRLASDSELIALRSIGLSPYRLLVPSIILSLMVTGVTFFFSD 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + ++ + + +L E F
Sbjct: 136 YVAPQATQQAKQILADALKKDQPAFVEDNIIYPEYRKITLENGRDQTVLTRLFYAEKFDG 195
Query: 182 ITIDKKNKIIHRK---------DADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTT 227
+ + + + + + ++ Y R +
Sbjct: 196 QQMQGLTILDRSQPGVNQIVTSQSAMWNLDSNSWDFYNGTIYLIAPDGSYRNIVRFQHQK 255
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS-NIFHNYRAETQFYFLIVIPLMLVA 286
L++P K + A S E + + S N + E + +P + +
Sbjct: 256 LDLPRAPLDIAKGKQNPAEMSIAEAKEYLRIVKLSKNEPRARKVEVRIQEKYALPFVCIV 315
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
LI +++ L+ +N I F Y + I S G GI+ PV +A +P L
Sbjct: 316 FGLIGSAIGLKPQ-NNNKATSFGICIILIFSYYLLSFIASSMGIWGIISPVVSAWLPNTL 374
Query: 347 TISLSILILLQK 358
I ++L+Q
Sbjct: 375 GIIAGTVLLVQT 386
>gi|34498371|ref|NP_902586.1| hypothetical protein CV_2916 [Chromobacterium violaceum ATCC 12472]
gi|34104225|gb|AAQ60584.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 358
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/358 (15%), Positives = 123/358 (34%), Gaps = 2/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY ++TL+ LL + L DL +G NY+ A A +P
Sbjct: 1 MKLIHRYIVSTLTQSTLFTLLALLGLYGFFDLLGEVPALGT-GNYTAGVMATYVALLIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L +SE + R G+++ Q+ + + + T+L+
Sbjct: 60 HAYELMPLAVLIGGMVAMTQLASSSEYTVIRTSGVTLKQIAATLLKFGLGFAVLTILLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + + ++ W++ + ++ +
Sbjct: 120 FAAPWAMQEAERTRLTATHSIVAKEFRSGTWVKDNQNFINVHEMLPDNTLLGIRIYTYDQ 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ +I R +K+ V I + ++ +
Sbjct: 180 DFKLERTRIAERGTFSKQDRSWQLENVKETVLAPNRTISAVYPTLKWKSIVEPEILSVLL 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S + ++ + N R E + + PL ++M L+A + + + R
Sbjct: 240 VVPEQMSAHNLLTYIEHLK-KNKQQTQRYEIALWSKLFYPLACISMALVALAFTPQQRRH 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
Q I + GI G + + + G + +A +P ++ + I I+ ++E
Sbjct: 299 GQLGIKLFAGICLGVTFHFVNRLFGHLGLLYDWNAILSATLPTLIFLLGGIAIIAKQE 356
>gi|325198681|gb|ADY94137.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
Length = 356
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 132/361 (36%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ + + I +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAINGKISTGNTDI-----WLKEKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|121635228|ref|YP_975473.1| hypothetical protein NMC1491 [Neisseria meningitidis FAM18]
gi|120866934|emb|CAM10694.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis FAM18]
gi|261392197|emb|CAX49711.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 8013]
gi|325142744|gb|EGC65119.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
961-5945]
Length = 356
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 135/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGIWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|84622419|ref|YP_449791.1| hypothetical protein XOO_0762 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188578606|ref|YP_001915535.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366359|dbj|BAE67517.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188523058|gb|ACD61003.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 368
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 121/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +Y+ A VP
Sbjct: 9 DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQ-GSYTFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + + + G +K+L D
Sbjct: 128 WAQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + +++ E Q++ PL ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRSRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|325132744|gb|EGC55427.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
gi|325138629|gb|EGC61188.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
ES14902]
Length = 356
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 135/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGIWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLTGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|307294586|ref|ZP_07574428.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
gi|306879060|gb|EFN10278.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
Length = 367
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 117/357 (32%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y + +L T L + ++ +DL + ++ A R P I+
Sbjct: 12 ISWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQIVA 71
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +PF L+ +++ +LN+ SE++ +A G+S Q+L P + ++ + + + I
Sbjct: 72 RFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNERIV 131
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + +
Sbjct: 132 ARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFNRV 191
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQ 243
+ I + L++ ++ R + + I+ D F
Sbjct: 192 NNMLTTIVQAPKGHYDPVAKSWVLEEARQFDVARGTERQVGTVRFGRDIRPDQFTLAKVD 251
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F ++ + + E + + PL + M ++ + + +RS Q
Sbjct: 252 PDALTFSQLQAAIGDLRDAGRP-TSELEGSLWHKLSGPLSALLMPILGSVAAFGLARSGQ 310
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G P AA P +L + + +L + E+
Sbjct: 311 LFVRAVMGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFRTEE 367
>gi|302342717|ref|YP_003807246.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639330|gb|ADK84652.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 359
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y +LK + L+ + L + D E + E S + +VP
Sbjct: 1 MRILGLYVAGEFLKVFGFLLVAFVSLFTLFDFIEKVDNFHEAL-VPASTMLMYFLLQVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II + P L+ I+ +++ E + ++ G+S+ + P V+ ++ + + T L+
Sbjct: 60 IISLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLPIVLLALTITLSTALINE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + P + +
Sbjct: 120 MALPGTKARTNHIWNVMVEKRPSSAYSHEKF---WFKGNGSIYHIGLFDPLGQVLSNVVY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV----KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D + R DA A K L + Q G + + N+P + + F
Sbjct: 177 YRFDDHFNLAERIDARRATYIGGKWLFFLGLHQQRLPQGGYSAVVFDELEKNLPERPEDF 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S+ E+ + + + R + + I P + V M LI ++L
Sbjct: 237 SRLSKPSEEMGLAELSDHVGKVDAEG-YDTRRYQVDMHCKISYPFICVIMALIGIPLALF 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKS-FGKSGILLPVAAALIPVILTISLSILIL 355
R + G+ + + +S FG G+L P+ AA +P + + ++
Sbjct: 296 RERGRALAPGIVVGMLVALVYWISFGYARSIFGYGGVLPPMMAAWLPNAMFALAGVGMI 354
>gi|21244279|ref|NP_643861.1| hypothetical protein XAC3554 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109927|gb|AAM38397.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 368
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 121/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V L +G+ +Y+ A VP
Sbjct: 9 DWYVGRVVLFTVLLTWAVLLGLDLVNALASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + + + G +K+L D
Sbjct: 128 WAQNQADTLKASARYNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + ++ E Q++ PL ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRRRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|103487658|ref|YP_617219.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
gi|98977735|gb|ABF53886.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
Length = 366
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/353 (16%), Positives = 114/353 (32%), Gaps = 1/353 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L ++++ +DL ++ +P S R+P II+ +
Sbjct: 15 YVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ LN+ SE+V +A G+S Q+L P + ++L+ + I T
Sbjct: 75 PFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTRS 134
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + P +
Sbjct: 135 TAALGAWQKVEYKRVPVDSGVRSNIWVRDGDDLINAETVETSGPAVVLRGVTIYERTRGV 194
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ D+ A+ + + ++ D F
Sbjct: 195 LSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVRPDQFTLADVDGDEL 254
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
F ++ + + + + + I PL + M L+ A + +RS + +
Sbjct: 255 PFLKLKAAIDDLEAAGRPVDA-LKGVLWHKISGPLSAILMPLLGAVAAFGLARSGKLFVR 313
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
G+ GF + + G G P AA P IL + +IL++ E+
Sbjct: 314 AIIGMALGFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMILIRTEE 366
>gi|238019692|ref|ZP_04600118.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
gi|237863733|gb|EEP65023.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
Length = 363
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 130/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +Q N Q + I ++ + AK E T
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD A+ ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGLYL 357
>gi|167753885|ref|ZP_02426012.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
gi|167658510|gb|EDS02640.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
Length = 372
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/355 (14%), Positives = 119/355 (33%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +++V + D E + E + +P
Sbjct: 13 FKILDRYILGKFLSTYFFAIAMIIVVVVIFDYVEKIDNFTETKAPLKAIIFDYYLNFIPF 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++ ++ +
Sbjct: 73 FINQFSGLFTFIAVIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLGLNL 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + Q+ + + D + QI K + +
Sbjct: 133 WLIPVSQRSCVAFENQYIPRKARFQYDKNIYRQIEPGTFAYIRNYSKESNQASFFSLEEY 192
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--GFQK 239
+ + + + + + L+ I +D +
Sbjct: 193 ESGAMTASLEAAEVRFNPETKRWSARRYTTRTFDSLGVETFTQHRNLDTLINLDVNELGR 252
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + E+ + + + + + P+ +TLI S+S
Sbjct: 253 TDQLIKTMNIVELNQFLEQQRSKGSDSINIIQVEQHARYAYPVGTFILTLIGVSLSSRKV 312
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + GI F I + F KSG L P A IP IL + +++ +
Sbjct: 313 R-GGTGLHIGIGIALCFSYILFIRFFEEFAKSGTLPPWIAVWIPNILYLCIAVYL 366
>gi|56552290|ref|YP_163129.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543864|gb|AAV90018.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 364
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 124/367 (33%), Gaps = 10/367 (2%)
Query: 1 MPGILW------RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL 54
M L+ Y K ++ L + ++ +D+ ++ + +
Sbjct: 1 MIKRLFASRQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHY 60
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G
Sbjct: 61 VLLRTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGC 120
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + + + T + + + + I + + +N
Sbjct: 121 VSFVFNDHLVTRATAKLDAWQA-VDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNV 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIK 233
T + ++ AD L KV + + + +N +
Sbjct: 180 RLSGITVYN-RSQKTLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKPVLDINTDLP 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F + + + + + + + + + + M ++ +
Sbjct: 239 PERFTLADVKADEMEVVPLYRAIKALDAAGRPTDELKASLIH-RFTGAFAAILMPILGSV 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+RS + + + G+ GF + + G G P+ A+ P IL + +
Sbjct: 298 AGFGLARSGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEA 357
Query: 354 ILLQKED 360
+L++ E+
Sbjct: 358 VLIRTEE 364
>gi|325136762|gb|EGC59362.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
Length = 356
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 136/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLLSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I +++LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G ++ + I +K +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|187479476|ref|YP_787501.1| permease [Bordetella avium 197N]
gi|115424063|emb|CAJ50616.1| putative permease [Bordetella avium 197N]
Length = 389
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 123/370 (33%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +GE +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGEK--FSMLALLYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +L+ V +I + I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLMRMLWVVTIPVMIGATLLSEFVTPI 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + I + L + D T +
Sbjct: 124 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTRDGGTRIINIQTLLADGQVRDVTLYELKP 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----------------KNSTTLN 229
++ A + + + L VV+ + S L+
Sbjct: 184 DLELESLSKAAKGVFTDGDLLLSDVVQTRIAPEAAQALANAKQPPKPPAEVETLASLRLD 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S +I + + N R + V P L+ M
Sbjct: 244 TTLSPERLLARVLTPERMSAATLIDYIDYL-HHNQLQADRQVVALWRKFVYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA ++ +R V GI G + + + + G P AL P +
Sbjct: 303 IAAPIAFMQTRRGGVGAKVFIGILMGVAFFMVNQLSLNVGMLSRWPPWLTALGPNAAAMI 362
Query: 350 LSILILLQKE 359
+++ L+ E
Sbjct: 363 VALGALVMME 372
>gi|325917725|ref|ZP_08179913.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
gi|325536054|gb|EGD07862.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
Length = 368
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +YS A VP
Sbjct: 9 DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYSFGHAVAFVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ +
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETVGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D + W + N + G +K+L D
Sbjct: 128 WAQNQADTLKTSARYNSDMAMARYSGLWAREGNTFLNALGGEEKLLANGGTALSLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YNLDTNGRLQQLTYASVAEHRDGRWTLRQVRRDTFQDRSVQRETFPELPWQSQLSPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+ + + + ++ E Q++ PL ++A+ + A S
Sbjct: 248 SGLAKPRNLSAHELQQSIEYRRRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|294793349|ref|ZP_06758494.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
gi|294455780|gb|EFG24145.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
Length = 363
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 131/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +Q N Q + I ++ + + AK E T
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLLYAKSYDAETKQLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|298492659|ref|YP_003722836.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
gi|298234577|gb|ADI65713.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
Length = 391
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 124/369 (33%), Gaps = 16/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY L L+ + +V ID + I+ + ++P ++
Sbjct: 20 IMDRYLAMQLLPLFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFILKLPYVM 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T + I
Sbjct: 80 VYSFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLTAVLLSSLVTAMTYIFNEQI 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++Q + + ++ KIL + F
Sbjct: 140 APAANYEATRTLEQALKSDKPSFKQHNIYYPEYREVKEKDGSTTKILSRLFYADQFDGKQ 199
Query: 184 IDKKNKIIH---------RKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLN 229
+ I ++ Y + R + L
Sbjct: 200 MQGLTIIDRSREGLNQILVSESAQWNASQKVWNFYNGTIYLVAPDRSYRNILRFEHQQLQ 259
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + S + + + ++++ + R E + I P + +
Sbjct: 260 LPRTPLNLAENSRDYGEMNISQALQQLEVERLAGNPQKIRKLEVRIQQKIAFPFVCIIFG 319
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ +++ R+ + + F Y ++++ + ++ IL P+ A +P +
Sbjct: 320 LVGSAMGTIPQRTGR-GTSFGISVIVIFSYYLLLSVSGALAQADILSPLIGAWLPNSFGL 378
Query: 349 SLSILILLQ 357
+ +L++
Sbjct: 379 VTGLFLLMR 387
>gi|269797613|ref|YP_003311513.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
gi|269094242|gb|ACZ24233.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
Length = 363
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 131/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +Q N Q + I ++ + + AK E T
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYDAETKQLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L + AALIP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTLLAALIPDTLGIIAGLYL 357
>gi|213855150|ref|ZP_03383390.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 356
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 119/349 (34%), Gaps = 3/349 (0%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
K T + L + L +I + + G+ NY + VP IQ P
Sbjct: 9 KTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFPMA 67
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L+ ++ L + SELV+ +A G + Q+ + +I L + T+ + +A GE++
Sbjct: 68 ALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQM 127
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+ Q G + W + N I F + +
Sbjct: 128 ARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRY 187
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQFASRSF 249
D ++ + +I + S T + D + + S
Sbjct: 188 AASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSI 247
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + + S R + + I PL + M L+A S RS + V
Sbjct: 248 SGLHNYVKYLKSSGQ-DAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVV 306
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 307 TGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 355
>gi|29654138|ref|NP_819830.1| putative permease [Coxiella burnetii RSA 493]
gi|161831591|ref|YP_001596891.1| putative permease [Coxiella burnetii RSA 331]
gi|29541404|gb|AAO90344.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
gi|161763458|gb|ABX79100.1| putative permease [Coxiella burnetii RSA 331]
Length = 355
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 130/360 (36%), Gaps = 11/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 1 MP-LLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 59 SDLYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E G + K+ W+ + I + + + +
Sbjct: 119 EVIAPQLEASGEETKLTELSKAVGYKALGDVWLHGAQSFIHI-----GSVDAKNKISEVS 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
I+ K++++ A L V + Q+ + L I D
Sbjct: 174 QFFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHL 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + +S + + + ++ R F+ + PL V M +
Sbjct: 234 QQGRKMVDRQSIVGLYHTIRYHQQAG-LQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI GF Y + F + P+ AAL+P +L +++L
Sbjct: 293 SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRY 352
>gi|253583478|ref|ZP_04860676.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251834050|gb|EES62613.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 362
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 119/361 (32%), Gaps = 7/361 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++K+ L+ + + V L ++ + + +S V T +P I
Sbjct: 4 KIIDRYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSD-GRFSADESIVYILTMIPKI 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L+ +++ ++ E++ + GIS +++ + S ++ I L+ +
Sbjct: 63 LIDVAPLAVLLGSLMTVSSMASNLEVISLKTAGISFKRIVLFPIFISAVIAIIVFLINDS 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + +++ N +G + +
Sbjct: 123 LYPYSVRKNREIKDGGNTRREMPVEKRNAFLRGENSNYVYLMGKINRETGFGENIEIVDL 182
Query: 183 TIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
+ LK Y + + T + D F
Sbjct: 183 NEEFNKVERIITAKEGRYNFTKKVWVLKDANIYNGKELKKAEEVKLFTEDKYDDEPDKFI 242
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + E+ K + + P ++ + S+ +
Sbjct: 243 TKSVEPKTLTIKELKKSVREIKSIGG-DTRELLVEIGNRYSFPFSSFIISFLGLSLGSRY 301
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R I +A + G+ Y + ++ +G L P + IP I+ + + I + +
Sbjct: 302 VR-GASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFMYRA 360
Query: 359 E 359
E
Sbjct: 361 E 361
>gi|167856192|ref|ZP_02478929.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
gi|167852681|gb|EDS23958.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
Length = 355
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 129/363 (35%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L + + L + L +I E +G +Y A +P
Sbjct: 1 MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVG-RGSYDGLHAAYYTLLTMPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ L SELV+ ++ G S +++ + +I L + T+++
Sbjct: 60 DIETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVLTMIMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I ++ +
Sbjct: 120 WGVPQTEQYARNMRSIAQSGGSMLATQGGFWAKDGNDFIYIR------QIQDERNLNNIL 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
I + K A+ A L+KV + + + T I
Sbjct: 174 IYQFDNQVLKSIKQAEKATYSEQGWLLQKVDKSEIHESGITQTRETDQTWKTSITPSKLG 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F + R E F+ + P+ + M L+A S
Sbjct: 234 IASLKPESLSISGLADYVGFLKDTGQ-DPKRFEITFWRKVFQPISMAVMMLLAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + L ALIP +L +S+ +L +
Sbjct: 293 LRSSTMGAKIVIGILTGFVFYVANIVFGNLSLVVSWLPVPIGALIPSLLCLSVVWWLLNK 352
Query: 358 KED 360
K D
Sbjct: 353 KRD 355
>gi|304321347|ref|YP_003854990.1| putative permease [Parvularcula bermudensis HTCC2503]
gi|303300249|gb|ADM09848.1| predicted permease [Parvularcula bermudensis HTCC2503]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 71/359 (19%), Positives = 154/359 (42%), Gaps = 6/359 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K L L LL ++V +DL E + +P L R P +I +
Sbjct: 7 YLAKRTLGGVLGLLLVIWLIVVSVDLIEAMRDIARIPGAGPIAALRLTLLRTPQLILSLS 66
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PFI L + + + R SE+ + RA G+S+W+L+ P V+ ++ G+ ++P+A
Sbjct: 67 PFIFLFGTLWAYGQMARMSEIAVLRAAGLSVWRLIFPPVILAVAAGLLIATTLDPLAARL 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISN--PQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + W++ + + A++ + + E+ T
Sbjct: 127 AETAQTVKNEARSGEEAAAKRPHLWLRQNEIGSDGIALLHAERYRENDPVLEEVTVWRRT 186
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--PIDKNSTTLNIPIKMDGFQKFSEQ 243
+ I R DA A+I ++L + P + + + I + + +
Sbjct: 187 QDGAFIERLDAPRALIDAQVLRLMQARRSTSIATTAPQIEAEIEVPVAIDLRLLDQDRQT 246
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE-FSRSN 302
+ S + + + + + + + +++ L +PL L AM ++A + +L +R
Sbjct: 247 ADTLSVWALPETIRLMGDAGM-TTTKFRLRYHALWSLPLKLAAMVILACAFALGMNARGG 305
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+++ GI +GF+L+ + + + ++ I+ AA P +L + ++ +LL +EDG
Sbjct: 306 GTALLMGMGILAGFLLFILSELSAAIAEAAIVPVGLAAWAPALLAVLFAVTLLLYREDG 364
>gi|78049235|ref|YP_365410.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325925500|ref|ZP_08186891.1| putative permease [Xanthomonas perforans 91-118]
gi|78037665|emb|CAJ25410.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544092|gb|EGD15484.1| putative permease [Xanthomonas perforans 91-118]
Length = 368
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +Y+ A VP
Sbjct: 9 DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + + + G +K+L D
Sbjct: 128 WAQNQADTLKASARFNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YHLDPSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + ++ E Q++ PL ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRRRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|282850060|ref|ZP_06259442.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
gi|282580249|gb|EFB85650.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
Length = 363
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 131/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +Q N Q + I ++ + + AK E T
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYNAETKQLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|197287278|ref|YP_002153150.1| permease [Proteus mirabilis HI4320]
gi|227357022|ref|ZP_03841393.1| inner membrane protein [Proteus mirabilis ATCC 29906]
gi|194684765|emb|CAR46795.1| putative permease [Proteus mirabilis HI4320]
gi|227162825|gb|EEI47785.1| inner membrane protein [Proteus mirabilis ATCC 29906]
Length = 359
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 125/344 (36%), Gaps = 3/344 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L +Y + L++ L L + L +I + ++G+ +++ + A +
Sbjct: 1 MFGVLDKYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQ-GDFTTLDAGIYAVLNIL 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q P L+ ++ L SELV+ +A G + Q+ + +I L + TVL+
Sbjct: 60 KDVQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A GE+ + + ++ W + N I + + +F
Sbjct: 120 EWGAPQGEQYARNYRAEKIMGNSLVSTNRGMWAKDGNQFIYINRIKSQNEMQGITLYNFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+ + + D ++++ +I K S + +
Sbjct: 180 NNRKLETVRYASSATYDPDKKVWLLKQVEQSDLTSPQKITGKKQVSLEWQTRLTPEKLSV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + + + +S E F+ I P+ + M L+A S
Sbjct: 240 VALDPDALSISGLYQYVKYLKQSGQESAN-YELNFWKKIFAPISVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R+ + V GI GF+ Y + + + V AAL+P
Sbjct: 299 RTVPMGLRVVTGIAFGFLFYIVNEVSGRLSLVYGIPAVVAALVP 342
>gi|300725025|ref|YP_003714351.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
gi|297631568|emb|CBJ92277.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
Length = 359
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/359 (20%), Positives = 130/359 (36%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTALSAGIYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L + T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVLLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + I K
Sbjct: 120 EWVAPQGEQLARNYRSQKMFGGSLMSTTKGLWAKDGRDFVYIQSVGKDNALNGVSIYHVD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
K D ++++ ++GRI + S N + +
Sbjct: 180 ENRKLLSVKYAASAVYDKDNQQWKLSQVEESDLTKFGRIIGSQRVSAEWNSQLTPEKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S + + +++ R + + + PL + M L+A S
Sbjct: 240 VSLDPDALSIRGLHQYITYLK-LGQQDAGRYQLNMWKKVFAPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R V GI GF+ Y + I + P+ AL+P +L LS+ +LL K
Sbjct: 299 RCVPMGFRVVVGISMGFLFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFGLSVYLLLHK 357
>gi|166713423|ref|ZP_02244630.1| hypothetical protein Xoryp_18790 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 368
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 121/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +YS A VP
Sbjct: 9 DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYSFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAALALLTAIMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N D S W + + + G +K+L D
Sbjct: 128 WAQNQADTLKTSARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + L++V + + + + +
Sbjct: 188 YHLDSSGRMQQLTYASVAEHRDGHWTLRQVRRDTFQERSVQRETFPELPWQSLLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + +++ E Q++ PL ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRSRNG-LDARDYEEQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S+ + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSVWLFRRR 366
>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
Length = 359
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 133/360 (36%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY+ K + + + + + +D + N+S+ +G ++P
Sbjct: 1 MSILHRYWLKEFTRFFAIVQMLLLCIFLAVDYLSNMEKFL-RSNFSLIQGLGYILLKIPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q P ++ IVVF +NR +EL+ + G+S++ LL P V+ ++L + + +
Sbjct: 60 MFVQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVLVGVILAMTMIFLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + K + W I + I P ++ T
Sbjct: 120 TIVPYTMAKANHIRSSTLKKNKKIYAT---WENIWIRDGNKIIHINYFNPADNSISGITI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+ KI R DA+ + + +L V+E + + + ++
Sbjct: 177 TSFGADFKIATRVDAENGRFDSGQWQLSNVLEQNNPGDEHNADIQFYDHKAFALDVEPAD 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +++ S E+ + + F+ I P++ + M L+ A +
Sbjct: 237 LKTVAKKTDQMSIQELKAYIHKIENEG-YDATHYIVDFWAKIAFPIICLVMALVGAGAGM 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + +A GI F + + S G G++ P +A ++ I L+ + L+
Sbjct: 296 LSAAKENMPLGIALGIGVAFCYWVVHGFCTSLGYGGMIPPFLSAWTADLIFICLTTIFLV 355
>gi|294625210|ref|ZP_06703851.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664572|ref|ZP_06729914.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600484|gb|EFF44580.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605656|gb|EFF48965.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 368
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L V +G+ +Y+ A VP
Sbjct: 9 DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 68 LFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L + N + S W + + + G +K+L D
Sbjct: 128 WAQNQADTLKASARYNSNMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+D ++ A +A + + L++V + + + + +
Sbjct: 188 YHLDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + + ++ E Q++ PL ++A+ + A S
Sbjct: 248 AGLAKPRNLSAHDLEQSIEYRRRNG-LDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + L A +P ++ + +S + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|197119769|ref|YP_002140196.1| membrane protein [Geobacter bemidjiensis Bem]
gi|197089129|gb|ACH40400.1| membrane protein, YjgP-related protein [Geobacter bemidjiensis Bem]
Length = 391
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/362 (12%), Positives = 113/362 (31%), Gaps = 4/362 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L ++ ++ + ++ + E S + A +P
Sbjct: 5 MKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEK-GIPFSDVVRMVAYLLP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P ++ + + + V
Sbjct: 64 PFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVT 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
G L+ + + + I D
Sbjct: 124 VYAVPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVIVHD 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +L+ ++ + +++
Sbjct: 184 ERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRVALAD 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ S + + + + + +++ + +P TL+A + ++
Sbjct: 244 GSNKATRKVSEMTLDELLHPPKGTQQKEIISRDLEYHSRLALPFSCFVFTLLAIPLGIQN 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + + I + Y ++ + G+ G L P+ A P ++ + + +
Sbjct: 304 RRSGK-AAGFSLSIGVILLYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLAGAYLFKKT 362
Query: 359 ED 360
D
Sbjct: 363 SD 364
>gi|295132762|ref|YP_003583438.1| permease [Zunongwangia profunda SM-A87]
gi|294980777|gb|ADF51242.1| predicted permease [Zunongwangia profunda SM-A87]
Length = 358
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 58/357 (16%), Positives = 127/357 (35%), Gaps = 3/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T LL + + ++L E +++ E A
Sbjct: 1 MKILDWYILKRYLGTFSMMLLLFIPIGITVNLAEKIDKILE-NEVPFVEVAEYYLNFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S ++ L P+++G+ ++ I + +
Sbjct: 60 FANLLFPLFLFLSIIWFTSKLANNTEVIAFLSSGVSFYRFLRPYIIGATIVCIAALGLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A K + ++ G + + + Q+++ + + + +
Sbjct: 120 FLAPKASKGFNEFKYEYLKRGHETQETKDVYRQVNDNEVIYASHFRPKTHTANNFVIEHF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-QYGRIPIDKNSTTLNIPIKMDGFQKF 240
K KI + + + G I ++ +P + D
Sbjct: 180 EGNQLKFKISASRLKFNTEDSTYTLTNVDKRIIGENGDIMSNQAKLDTILPFEFDELTPE 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + SF E+ + + ++ + Y + IP+ +T+IA +VS R
Sbjct: 240 TYIAETLSFSELNEFIKKESRRGSGNMNMYLVAAYKRVSIPVSAFILTIIAVAVS-SMKR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A GI F+ + + + P+ A IP I L++ +LL+
Sbjct: 299 RGGMGVNLAVGISLAFIFIFFDKVFGTIAEQSTFSPLLAVWIPNISFGILAVFLLLK 355
>gi|153007032|ref|YP_001381357.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152030605|gb|ABS28373.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 358
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/358 (15%), Positives = 122/358 (34%), Gaps = 7/358 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + + L G + + +D + L A + +++
Sbjct: 2 ILFRYAARRTFAAFVGSLAGVVAIFLAVDFVDNSASFTGPGWIPA--VLELYANKTAVVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+ P ++ + RT E RA+G+ W+L P ++L G V+V +
Sbjct: 60 RQVAPAAMVLGAAIAVSTFRRTREYTAMRALGLGPWRLAGPVAAVTLLAGAALVVVHDVW 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ G +Q + + I + T +
Sbjct: 120 GVEATARAEEIRATRFSRGVRQFQQAREPKRWFRSRDGRRIYHLGASLPGGGFARVTVLA 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQK 239
+ ++ R DA D L++V + + + +S P + F
Sbjct: 180 VTPDFRLAGRIDAARMRPDGDAWMLEEVQDRTFLPDGSVRLERADSRRYEFPEPPEAFAV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++ +++ + + Y + P V L+A +++L +
Sbjct: 240 VPGRPSQLRWRTLVAQIAVRRHLG-LATEEFQLERYDRVAYPFAGVPGALLAVALALRRN 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + + + + + + G SG + P AA P L ++L I + +
Sbjct: 299 RKGHVSAALVESVGVSLLFWGVQGVSFALGLSGRVAPWVAAWAPNALFLALGIAAVRR 356
>gi|150005671|ref|YP_001300415.1| hypothetical protein BVU_3161 [Bacteroides vulgatus ATCC 8482]
gi|212693333|ref|ZP_03301461.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
gi|254884104|ref|ZP_05256814.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|265753721|ref|ZP_06089076.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294776587|ref|ZP_06742057.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|319640869|ref|ZP_07995580.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
gi|149934095|gb|ABR40793.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|212664098|gb|EEB24670.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
gi|254836897|gb|EET17206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|263235435|gb|EEZ20959.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294449575|gb|EFG18105.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|317387506|gb|EFV68374.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
Length = 390
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 120/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 33 KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T +
Sbjct: 93 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++K ++ + S I D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 212
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ +K + E + R I + + I ++ F
Sbjct: 213 KKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 272
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ + + + + E ++Y I + +T I S+S +
Sbjct: 273 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKMK- 331
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 332 GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 384
>gi|290473525|ref|YP_003466395.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
gi|289172828|emb|CBJ79599.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
Length = 358
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 74/359 (20%), Positives = 132/359 (36%), Gaps = 3/359 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFTLVSLSGIIKFVDQLRKVGQ-GEYSAFAAGIYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L T+++
Sbjct: 60 KDIQIFFPMAALLGGLLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVFLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+I + Q G + W + N I K + F
Sbjct: 120 EWVAPQGEQIARNYRSQKMFGGSLMSTAKGMWAKDGNDFVYIKSVDKDNALRDVSIYHFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
K D ++++ Q GRI + S + +
Sbjct: 180 DNKKLLSVKYAATAVYDQNNRQWKLSQVEESDLRQIGRITGSQRISAEWKSLLTPEKLGV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + +++ R + + + PL + M L+A S
Sbjct: 240 VALDPDALSIRGLQQYITYLK-QGQQDAGRYQLNMWKKVFAPLSVAVMMLMALSFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI +GF+ Y + I + P+ AL+P +L +S+ LL +
Sbjct: 299 RSVAMGVRVIAGISTGFIFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFVVSVYFLLHR 357
>gi|241761652|ref|ZP_04759739.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373960|gb|EER63493.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 364
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 124/367 (33%), Gaps = 10/367 (2%)
Query: 1 MPGILW------RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL 54
M L+ Y K ++ L + ++ +D+ ++ + +
Sbjct: 1 MIKRLFASRQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHY 60
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G
Sbjct: 61 VLLRTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGC 120
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + + + T + + + + I + + +N
Sbjct: 121 VSFVFNDRLVTRATAKLDAWQA-VDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNV 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIK 233
T + ++ AD L KV + + + +N +
Sbjct: 180 RLSGITVYN-RSQKTLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKPVLDINTDLP 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F + + + + + + + + + + M ++ +
Sbjct: 239 PERFTLADVKADEMEVVPLYRAIKALDAAGRPTDELKASLIH-RFTGAFAAILMPILGSV 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+RS + + + G+ GF + + G G P+ A+ P IL + +
Sbjct: 298 AGFGLARSGRLFVRIVIGMSLGFAYFVADNFALTMGNLGTYPPLLASCSPFILFLLIGEA 357
Query: 354 ILLQKED 360
+L++ E+
Sbjct: 358 VLIRTEE 364
>gi|166367866|ref|YP_001660139.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
gi|166090239|dbj|BAG04947.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
Length = 389
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 57/369 (15%), Positives = 119/369 (32%), Gaps = 17/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY F L L+ + L I + + + ++P I
Sbjct: 18 ILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEFI 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T + + +
Sbjct: 78 VLAFPMSILLAALMAYSRLASDSELIALKSIGISVYRLIIPAIVLSLIVTGLTYVFNDYV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----------NPQQDIFIGAKKILPEN 173
A + + + K + + +
Sbjct: 138 APAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRQPDGGEPQTVLRRLFYAERFNGQ 197
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTL 228
+ + I ++ I + Y R + L
Sbjct: 198 EMLGLTILDRTQPEVNQIITSESASWNIEKNIWDFYNGTIYLIDPKGSYRNIVRFQHQQL 257
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAM 287
+P + + + + + + S R + Q I +P + +
Sbjct: 258 ALPRTPLDLAFRARDGSEMTLRQAREYLEILQLSGNPTKIRKLQVQIEQKISLPFVCLVF 317
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+I A++ L ++ I F Y + + S G G+L P+ AA +P IL
Sbjct: 318 GMIGAALGLRPQ-NSNKATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPLMAAWLPNILG 376
Query: 348 ISLSILILL 356
++ ++LL
Sbjct: 377 LTAGGILLL 385
>gi|159028498|emb|CAO87305.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 389
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 57/369 (15%), Positives = 118/369 (31%), Gaps = 17/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY F L L+ + L I + + + ++P I
Sbjct: 18 ILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEFI 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T + + +
Sbjct: 78 VLAFPMSILLAALMAYSRLASDSELIAFKSIGISVYRLIIPAIVLSLIVTGLTYIFNDYV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD----------IFIGAKKILPEN 173
A + + + K + + + +
Sbjct: 138 APAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRPPDGGEAQTVLRRLFYAERFNGQ 197
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-----STTL 228
+ + I + I + Y +N L
Sbjct: 198 EMLGLTILDRTQPEVNQIITSETASWNIEKNIWDFYNGTIYLIDPNGSYRNIVRFQHQQL 257
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAM 287
+P + + + + + S R + Q I +P + +
Sbjct: 258 ALPRTPLDLAFRGRDGSEMTLRQAREYLEILQLSGNPTKTRKLQVQIEQKISLPFVCLVF 317
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+I A++ L ++ I F Y + + S G G+L P+ AA +P IL
Sbjct: 318 GMIGAALGLRPQ-NSNKATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPLMAAWLPNILG 376
Query: 348 ISLSILILL 356
++ ++LL
Sbjct: 377 LTAGGILLL 385
>gi|120553895|ref|YP_958246.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
gi|120323744|gb|ABM18059.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
Length = 353
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 51/360 (14%), Positives = 118/360 (32%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I Y + ++ + L + Y + A +P
Sbjct: 1 MHKI-DGYVMRTVGGAMFLVMVVVLSLDVIFAFIAELED--TRNEYQTLQALWYVALTLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P + +V ++ +SEL + RA G+S+ +++ + ++++ + V +
Sbjct: 58 RRIYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSLKRIVWSAMKPALIVVLLGVAIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + E+I G S W + N + + N + +
Sbjct: 118 EYVAPTTERIAQSDKAVALGAGSSVASAEGVWHREGNTFMHL-----NAVQPNGVLHGVS 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
D ++ A+ AI D L+ V + ++ S +
Sbjct: 173 LFRFDDARQLQVASFAERAIYQGDYWLLENVTSTRIEPERTVRDVSASLRWETGLSPSVL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S + ++ + + F+ ++PL M L+A S
Sbjct: 233 SVLIVKPENLSMTGLYTYAAYLGEQG-LSAAQYWLAFWKKALMPLGTAVMVLVAISFVFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ G + + ++ P+ A L P+++ + +++ +
Sbjct: 292 PLRSVTMGFRVFTGLLVGLLFKYMQDLLGPMSMVYGFNPLIAVLAPIVVNGIVGAVLMRR 351
>gi|237723640|ref|ZP_04554121.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229437988|gb|EEO48065.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 390
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 119/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 33 KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T +
Sbjct: 93 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++K ++ + S I D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 212
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D ++ +K + E + R I + + I ++ F
Sbjct: 213 KKLVAHLTARSVTYDTVSVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 272
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ + + + + E ++Y I + +T I S+S +
Sbjct: 273 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKMK- 331
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 332 GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 384
>gi|254481253|ref|ZP_05094498.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
gi|214038416|gb|EEB79078.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
Length = 353
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 122/357 (34%), Gaps = 6/357 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L R+ L L + L + + + + + Y+ + + +P
Sbjct: 1 MRK-LDRHVGWTVFVAILLVLAIIVGLDAIAAFIDEADDISKT--YTFGQVGLYILLTLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + IPF L+ ++ L +SELV+ RA G+S +L+ + ++L+ I +
Sbjct: 58 GRLYEFIPFAALIGCMLGLGQLATSSELVVMRAAGVSTGRLVWVAMKPALLIAIMGFSLG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E++ ++ G+ W + N + +F
Sbjct: 118 EFVAPETEQMAETQRALAQNPGESFGGRYGIWNREGNTFLHFNAVEAGGVVHGITMLEFD 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + R + + L +Q + I +
Sbjct: 178 EDLLMEYSLRARRASFEGGYWTMEDAVLTNFSSWQ--TTRETHEVMRWDTGITPELLTVM 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + ++ + + + + + I+ P + A+ L+A S R
Sbjct: 236 AVEPEYLPISDLYRFSRYLQSQG-LDSDDYQLALWGKILQPAAIGALVLVAISFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ G + T ++ P+ AAL+P++L + +L+LL+
Sbjct: 295 EGTMGFRIFAGVIVGIVFRTSQDLLGPASLVFGFAPIYAALVPILLCGAAGMLLLLR 351
>gi|258544322|ref|ZP_05704556.1| membrane protein [Cardiobacterium hominis ATCC 15826]
gi|258520402|gb|EEV89261.1| membrane protein [Cardiobacterium hominis ATCC 15826]
Length = 350
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 129/356 (36%), Gaps = 11/356 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + L T+L L + + +++ ++ + +G+ NY+++ + +P +
Sbjct: 4 FDRYLLRTILATSLIALAFLLAVDYIVQISVDADDLGQ-GNYTLAILLLQLLLVLPEKLL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P L+ I+ L +E+ + RA GIS +L + ++++G+ ++ +A
Sbjct: 63 LYTPAAVLIGTIMGLGQLAAQNEIAVVRAAGISRLRLARAGIAFALIVGVLNIVNGETLA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L Q + W++ N I +
Sbjct: 123 PQLADRSRLLRNQALGQSSDPGREQGIWLKQQNTHIHIGALNPD-------GSLARIRSY 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDGFQKFSE 242
I +AD A +L+ ++ ++ + S
Sbjct: 176 YSDADSITISEADRATWQAPDWQLENPRAWRTRADKTERLTAPESWQNGATPQALHALSA 235
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
++ + E+ F + ++ + + + ++ PL AM L+A + +RS
Sbjct: 236 VKSAETLRELYTLTRFMAANG-LNHQQQSLKLWQRLLTPLTTAAMVLLALPFTFGNARSG 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
Q + GI G Y I ++ + P+ A +P+++ +++L+++
Sbjct: 295 QQGTRLVTGILLGVAYYVISGVIANLALLLHWPPLLGAALPILIFTLPPLILLMRQ 350
>gi|282897128|ref|ZP_06305130.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
gi|281197780|gb|EFA72674.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
Length = 391
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/372 (14%), Positives = 131/372 (35%), Gaps = 17/372 (4%)
Query: 1 MP-GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP I+ RY L L+ + +V ID + I+ + ++
Sbjct: 16 MPFSIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKL 75
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P ++ P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T +
Sbjct: 76 PYVMVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRMVLTAVLLSGLVTGMTYVF 135
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I+ + ++Q + + ++ G ++L ++F
Sbjct: 136 NEYISPAANYEASITLEQALKSDQPSFKQENIYYPEYREEKTKDGGTSRLLARLFYADEF 195
Query: 180 TSITIDKKNKIIH---------RKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNS 225
+ I ++ Y Y + R +
Sbjct: 196 DGKKMKGLTIIDRSKAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEH 255
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLML 284
L +P K S + + + ++++ + + E + I P +
Sbjct: 256 QQLKLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFIC 315
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ L+ +++ R+ + I F+ Y ++++ + ++ IL P A +P
Sbjct: 316 IIFGLVGSAMGTIPQRTGR-GRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPN 374
Query: 345 ILTISLSILILL 356
+ + + I+IL+
Sbjct: 375 LCGLGMGIVILM 386
>gi|33865647|ref|NP_897206.1| permease [Synechococcus sp. WH 8102]
gi|33632817|emb|CAE07628.1| possible permease [Synechococcus sp. WH 8102]
Length = 385
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 110/367 (29%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L L+ + ++ I + + + +P +
Sbjct: 14 LLDRWLVGEILAPLLFAVAAFTVVGLSIGVMFELVRRLVEDGLPAWTALQVMLLSLPRFL 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL ++ + L SEL R++G+S +L+ P +V S LL T+L + I
Sbjct: 74 VLSFPMATLFATLLAYSKLTANSELTALRSVGVSTVRLVVPALVLSALLTGMTLLFNDVI 133
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ----------ISNPQQDIFIGAKKILPEN 173
+Q+ + + + + + +
Sbjct: 134 VPQANTQAEVTLQKALGRALATEKGKDIIYSRFGRVREPGSERSGRGLKQLFYSRRFDKG 193
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLN 229
+ + + + + L K + + +D +
Sbjct: 194 EMVDVTVLDFSRAGFRQMLVAERALWNEGEAKWEFRDGQILTLNLNGSTTRVDFDRYLYP 253
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ + + + + E I+ ++ R + + P+ V
Sbjct: 254 LSSGPLKVARLPDDANNMTIAEAIEAERVEAEAGNLKAARKLQVRIQEKFTFPMACVVFG 313
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ I Y + S G G+L + AA +PV++++
Sbjct: 314 LIGSSLGSRPGSRTSRSQGFGISILLILGYYALSFSFSSLGVKGVLPALLAAWLPVLISL 373
Query: 349 SLSILIL 355
L+L
Sbjct: 374 GAGTLLL 380
>gi|224024955|ref|ZP_03643321.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
18228]
gi|224018191|gb|EEF76189.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
18228]
Length = 369
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/353 (16%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L +Y +L T + + + + V D+NE + + +P
Sbjct: 12 KRLDKYIIIKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPLKAIVFDYYLNFIPYY 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +L+ P+++ + ++ + T ++
Sbjct: 72 TNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIIALVTYILSTE 131
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +G + Q +K+ I S + D
Sbjct: 132 VIPTGSVTRLKFEQVYKNKKKVDYVRNIQLEVDSGVIAYMERYEDYNRTGYRFSLDKFED 191
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D A ++ ++ + E + R I + + I ++ F
Sbjct: 192 HKLVSHLTARRVTYDTATVHKWIIRDYMIREMKGMRETITRGDRMDSIINMEPQDFLITR 251
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + ++ + + K + E ++Y I +T+I S+S R
Sbjct: 252 GQQETMTSPQLREYIDKQKKRGFANIKIFEVEYYKRIATSFAAFILTVIGLSLS-SQKRK 310
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + GI F TI +F +G + P A IP IL + ++I +
Sbjct: 311 GGMGLHLGIGIGLSFSYILFQTISSTFAINGNVPPNLAVWIPNILYLFIAIYL 363
>gi|119486322|ref|ZP_01620381.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
gi|119456535|gb|EAW37665.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
Length = 392
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 47/370 (12%), Positives = 113/370 (30%), Gaps = 17/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L+ + + ID + + + ++P +
Sbjct: 21 ILDRYIISELIAPFLFGVGLFTSVALSIDTVFDLVRKVAESGLDVGIAMQIFLLKMPEFV 80
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P ++ ++V+ ++ SE+V R+ GISI++L+ P ++ S+ + + I
Sbjct: 81 VLSFPMSMVLTTLIVYGRMSSDSEIVALRSCGISIYRLVIPTLIFSLFITASMFVFNELI 140
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ---------------QDIFIGAKK 168
+ ++Q + + K
Sbjct: 141 VPATNYRASITLEQALHQDRLPVQEENIFYPEYRTIPIEDSDEEITILVRLFYAQEFDGK 200
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ E I + + + + + R I + L
Sbjct: 201 YMNEVTILDKSQQGITQIISSESAVWNGKQQSWDFFDGTVYMIDPKGSYRNIIRFDHKEL 260
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAM 287
+P ++ + + + + S + + + +P + V
Sbjct: 261 KLPRVPLDLASRKRRYDEMNIVQAHEYLELMKSSGNEKIVQKTKVRIQQKYSLPFVCVVF 320
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ A++ + R+ I F Y + I + G+ I+ P A +P+++
Sbjct: 321 GLLGAALGSQHQRT-NRSTSFGISIVIIFSYYMLAFITGAMGQKAIISPFLAGWLPIVIG 379
Query: 348 ISLSILILLQ 357
+ S L +
Sbjct: 380 LGASGFFLYK 389
>gi|152981500|ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacterium sp. Marseille]
gi|151281577|gb|ABR89987.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 382
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 52/382 (13%), Positives = 117/382 (30%), Gaps = 26/382 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +YF ++ L+ L+ + L DL +G Y I + +P
Sbjct: 1 MKILQKYFSLEIGRSVLFVLIAFLALFAFFDLVGELKSVGH-GGYKIQHAFLYVVLEMPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I SE I RA +S + + ++ + T +
Sbjct: 60 YVYELMPIAALIGTIWALSQFAARSEFTIMRASSMSTAMVGAILLKIGVVFALITFVFGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ--------DIFIGAKKILPEN 173
+ + + + Q+ W + F+ +++ P+
Sbjct: 120 FVVPITSNMAERIRVNSQGGALSQEFRSGLWTKDVIRSNGQEGEVLGSRFVNVRELRPDG 179
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----------------G 217
+ + + L +
Sbjct: 180 KLMNLKIYEFNRNFHLTSLITAGSADYAGANTWTLNDGTVAAFGESKLQGATTATDITTA 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + + A+ S ++ + +++N R E +
Sbjct: 240 ISTSKFKTQSLVSEMTPEILSVGFTDPATMSAIALVNYTQYLSENNR-DTVRYEIALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+V P + M +A + RS + + GI G I ++ G P
Sbjct: 299 VVYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A A++P +L +++++ L+ E
Sbjct: 359 ATAILPSLLFLTVAVGALMWVE 380
>gi|153209377|ref|ZP_01947372.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165919052|ref|ZP_02219138.1| putative permease [Coxiella burnetii RSA 334]
gi|212218294|ref|YP_002305081.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
gi|120575377|gb|EAX32001.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165917247|gb|EDR35851.1| putative permease [Coxiella burnetii RSA 334]
gi|212012556|gb|ACJ19936.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
Length = 355
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 129/360 (35%), Gaps = 11/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 1 MP-LLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 59 SDLYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA G + K+ W+ + I + + + +
Sbjct: 119 EVIAPQLGASGEETKLTALSKAVGYKALGDVWLHGAQSFIHI-----GSVDAKNKISEVS 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
I+ K++++ A L V + Q+ + L I D
Sbjct: 174 QFFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHL 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + +S + + + ++ R F+ + PL V M +
Sbjct: 234 QQGRKMVDRQSIVGLYHTIRYRQQAG-LQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI GF Y + F + P+ AAL+P +L +++L
Sbjct: 293 SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRY 352
>gi|261492351|ref|ZP_05988913.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496137|ref|ZP_05992545.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308239|gb|EEY09534.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312034|gb|EEY13175.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 365
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 5/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K L L + L +I E +G +Y + A +P
Sbjct: 6 MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVG-RGSYDGLKAAYYTFLTIPR 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 65 DIETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTALPLVLFTMIIGE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I + +N + F
Sbjct: 125 WGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGNSFIYINHIKNEKSLDNVLIYQFGE 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + + + K++K + + +
Sbjct: 185 GQNKRELQSVLKAGTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPSKLGI 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + + F + R E F+ + P+ + M L+A S
Sbjct: 245 VSLKPESLSISGLADYVGFLKDTGQ-DPKRFEITFWRKVFQPISMAVMMLLAISFIFGPL 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQK 358
RS+ + GI +GFM Y + + L ALIP +L + + +L +K
Sbjct: 304 RSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPVPVGALIPSLLCLIIVWWLLSKK 363
Query: 359 ED 360
D
Sbjct: 364 RD 365
>gi|254446939|ref|ZP_05060406.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
gi|198263078|gb|EDY87356.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
Length = 347
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 122/354 (34%), Gaps = 11/354 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ L T LL + L + +YS RVP + +P
Sbjct: 1 MARAILAATALVLLVILFLDAFFGFLGEGKYVARYADYSYWHAIGYVMLRVPGKAMEFMP 60
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
ITL+ ++ L SEL RA G+S +++ + +++ + L+ +A +
Sbjct: 61 AITLIGALLGLGTLASNSELTAMRAAGLSKGRIVWGGMKTGLIIALAVALLGEYVAPQSD 120
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
Q + + K L I++ ++
Sbjct: 121 LKAAAFRAQAQGRAITSELRDFWLKNGDEFVYIKRAEPDKRLRGVRIFQ-------VQEG 173
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQKFSEQFA 245
++ A A +L +V EY++ + + T + + +D F+
Sbjct: 174 ELKRLLKAASAQHTASGWRLNQVREYRFEDDAVSRKVIGQMTKSQLVDVDLFEVAQLSPE 233
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ E+ +++ + N F+ + PL ++ M L+A RS
Sbjct: 234 NMRLLELDNYIAYLDD-NRLEATLYRKAFWKKVTAPLSILVMLLLAMPFIFANRRSGNAG 292
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ GI G Y I +++++ G+ + + A P++ +L +L + E
Sbjct: 293 ARLVIGILFGMSYYIISSLIENLGQVYGVPVLLGAFTPIVAFTALGFWLLKRSE 346
>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
Length = 366
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 58/357 (16%), Positives = 121/357 (33%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y + +L T L ++++ +DL + P S ++ R P II
Sbjct: 11 ISLYMARLFLTRTFAVLAMLVVVLQTLDLLGNSGDILAYPGNSDAQLWHYVGLRAPQIIA 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+PF L+ +V+ LN+ SE++ +A G+S Q+L P V+ ++ + I + + I
Sbjct: 71 TFLPFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSIISFVFNERIV 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + I
Sbjct: 131 VRSTAALSAWEAVDYGPVPPDSGVKSNPWVRDGNNLVNAAIVAGRGTAVQLRQVEIYNRI 190
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + I + + + L+ ++ R + + I+ D F
Sbjct: 191 NNRLTTIVQAPKGHYDVASKSWVLEGARQFDVARGTVSNIGTVRFGRDIRPDQFTLARVD 250
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F+E+ + + E + + PL + M ++ + + +RS Q
Sbjct: 251 PDALTFHELEAAIGDLRDAGRP-TKELEGSLWHKLSGPLSALLMPILGSVAAFGLARSGQ 309
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G PV AA P L + + +L + E+
Sbjct: 310 LFMRAVLGMALGFAYFVADNFSLAMGNLGAYPPVLAAWAPFFLFLLVGETVLFRTEE 366
>gi|237710072|ref|ZP_04540553.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229456165|gb|EEO61886.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 365
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 120/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 8 KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++K ++ + S I D
Sbjct: 128 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ +K + E + R I + + I ++ F
Sbjct: 188 KKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ + + + + E ++Y I + +T I S+S +
Sbjct: 248 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKMK- 306
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 307 GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 359
>gi|22297556|ref|NP_680803.1| hypothetical protein tlr0012 [Thermosynechococcus elongatus BP-1]
gi|22293733|dbj|BAC07565.1| tlr0012 [Thermosynechococcus elongatus BP-1]
Length = 379
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 114/359 (31%), Gaps = 9/359 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + ++ ++ + VI + + + + R+P
Sbjct: 19 LLDRYILREMIRPFVFGFGIFTAIAAVIGTVFYLIRNMVEHHLGLLSAIQVFFLRLPTFA 78
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L ++ + L+R SEL+ ++ G+S +L+ P ++ + T + +
Sbjct: 79 VLGIPMAMLFGALLSYSQLSRRSELIACKSCGVSPVRLVRPALLAGFCALLCTFALNELV 138
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A I ++ + + + + ++
Sbjct: 139 APPLAYRAIKTLEVAIHRPQPTFQTRNIFYRRFGDGHLRQLFF--AHRFDGKVMGQVTVL 196
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGFQ 238
++ ++ A A ++ + + P
Sbjct: 197 NFEQGELREIITAQEAQWQGSAWLFRQGTYHHLRGDRDYDVAEIFSERRFAYPRTPLDLA 256
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + EI + + +S R Q + +P + ++ +I A + +
Sbjct: 257 METRVPEFMTSREIYRYLQILAESGDAKRLRQWRVQLQEKLSLPFLCLSFAVIGAVLGIS 316
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R Q + F Y I +FG+ G + P+ A+ +P + ++++ +L
Sbjct: 317 SPRQGQ-GRAFGLSVAIIFGYYVAAFIFTAFGEGGAVHPIVASWLPKGIVSAIALGMLY 374
>gi|198274616|ref|ZP_03207148.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
gi|198272063|gb|EDY96332.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
Length = 391
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 118/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY +L T + + + + V D+NE + + +P
Sbjct: 34 KRLDRYIIVKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPISAIIFDYYLNFIPYY 93
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +L+ P+++ + ++ + T ++
Sbjct: 94 TNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIIALVTYVLSTE 153
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +G + Q +K+ I + + D
Sbjct: 154 VIPTGSVTRLKFEQVYKNKKRADYVRNIQLEVDTGVIAYMERYEDYNKTAYRFSLDKFED 213
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFS 241
+ R D ++ +K + E + R I + I ++ F
Sbjct: 214 HKLVSHLTARRITYDTTTVHRWIIKDYMIREMKGMRETITRGGRMDSIINMEPQDFLITR 273
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + ++ + + + + E ++Y I +T+I S+S R
Sbjct: 274 GQQETMTSPQLREYIDKQKQRGFANIKVFEVEYYRRIATSFAAFILTVIGLSLS-SQKRK 332
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + GI F TI +F +G P A IP IL + ++I +
Sbjct: 333 GGMGLHLGIGIGLSFSYILFQTISSTFAINGNAHPNLAVWIPNILYLFIAIYL 385
>gi|319788013|ref|YP_004147488.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
gi|317466525|gb|ADV28257.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
Length = 366
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 125/361 (34%), Gaps = 8/361 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L + L + L V+ L+ +G+ +Y + A VP
Sbjct: 9 DLYIGRVVLASVLLTWAVLVGLDVVLALSGQLGDLGK-GSYDFPTALAVVAYSVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I P+ ++ +++ L TSEL RA+G+S +L +LL V+ +A
Sbjct: 68 IFPYAAVIGSLLGLGQLAGTSELTALRALGLSRRRLSISVAAALVLLTGLMVVTGETLAP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW--EDFTSIT 183
G++ L K+N W + + + G +++ + D
Sbjct: 128 WGQRQADQLKLAAKNNNVAMARYSGLWAREGDTFLNAIDGQERVEGGQRVLELRDVRLYE 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKF 240
+ ++ ++ A L + + +L+ V + + + + + +
Sbjct: 188 VGEEGEVRSLTRAGLVVHDANGWQLRDVRRVAFTGAGAVEETAEEQKWDSELDANALAAG 247
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S ++ + + ++ E ++ PL ++A+ L A + R
Sbjct: 248 VTRPRNLSASDLQASIEYRRRNG-LDARDYEDTYWSRWFYPLNVLALCLAAVPFAFGSLR 306
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + GI + + A +P +L ++ S L +++
Sbjct: 307 SGGMGKRLFLGIVFALGFMLLQMQFGRLAGAFRFDYRIAYALPPVLMLATS-WFLFRRKS 365
Query: 361 G 361
G
Sbjct: 366 G 366
>gi|87124323|ref|ZP_01080172.1| possible permease [Synechococcus sp. RS9917]
gi|86167895|gb|EAQ69153.1| possible permease [Synechococcus sp. RS9917]
Length = 388
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 46/369 (12%), Positives = 110/369 (29%), Gaps = 15/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + L+ + ++ + + + + + R+P +
Sbjct: 18 LLDRWLLGELIGPLLFAIAAFTVVSLSVGVMFELVRRIVESGLPVGIAVQVLLLRLPSFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL R++GIS +++ P + ++++ T + + I
Sbjct: 78 VISFPMATLMATLLAYSRLSANSELTALRSVGISATRMIAPALALALVMTGLTFVFNDVI 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS---------NPQQDIFIGAKKILPENH 174
+Q+ + + + K E
Sbjct: 138 VPRTSLSAEITLQRALGRSVSTEKGNNIIYSRFGRLVAGDGESETGLAQLFYAKKFNEGV 197
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNI 230
+ + D K + D + +
Sbjct: 198 MSGVTVLDFSRLGFTQMLVADEARWNERESKWEFLDGQILTLSPSGSVTSADFDRYLYPL 257
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVAMTL 289
K + + + E I+ +++ R + +P+ + L
Sbjct: 258 SAAPIRIAKLPKDANNMTVAEAIEAERMLDEAGDRKEARRMRVRIQEKFTLPMACLVFGL 317
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I +S+ + + + + Y + S G G L PV AA PV++
Sbjct: 318 IGSSLGAKPNGRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPVVAAWAPVLI-SL 376
Query: 350 LSILILLQK 358
+LL++
Sbjct: 377 AGGGLLLRQ 385
>gi|154707760|ref|YP_001424260.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
gi|154357046|gb|ABS78508.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
Length = 355
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 130/360 (36%), Gaps = 11/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + T +L + + ++ +Q+G L +Y + + + T++P
Sbjct: 1 MP-LLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIG-LVHYGLGQAFLYVLTQLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 59 SDLYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E G + K+ W+ + I + + + +
Sbjct: 119 EVIAPQIEASGEETKLTALSKAVGYKALGDVWLHGAQSFIHI-----GSVDAKNKISEVS 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
I+ K++++ A L V + Q+ + L I D
Sbjct: 174 QFFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHL 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + +S + + + ++ R F+ + PL V M +
Sbjct: 234 QQGRKMVDRQSIVGLYHTIRYRQQAG-LQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI GF Y + F + P+ AAL+P +L +++L
Sbjct: 293 SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRY 352
>gi|224825294|ref|ZP_03698399.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
gi|224602215|gb|EEG08393.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
Length = 358
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 2/358 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+++RY TLY L + L D+ + +G +Y + + + A +P
Sbjct: 1 MKLIYRYITTQLTVATLYALAALLALYAFFDIIKEVPDLGH-GSYGVPQMLLYIALLMPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P + L+ +V L +SE I R G+++ Q+ + I + T L+
Sbjct: 60 HAYELMPLVVLIGGMVAMTQLATSSEYTIIRTSGVTLAQVAGVLLRFGIGFAVITGLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A EK + + Q+ W++ ++ +
Sbjct: 120 FGAPFSEKQAERMKLSATKSMVTQEFHSGIWVKDDQNFINVGEMLPDNTLLGVRIYTYDK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + R K+K+ N+ + I+
Sbjct: 180 DYRLVQTRFAERGTYQRPQHVWRLEKVKETTLGDKATTTRQLNTLDWHSVIEPSILDVLL 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S ++ + SN R E + PL ++M L+A + + R
Sbjct: 240 VVPEQMSAMDLTTYIEHLR-SNEQKTQRYEIALWSKFFYPLACISMALVALAFTPRQRRH 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
Q I + GI G + + + G + AA +P +L + I I +++E
Sbjct: 299 AQLGIRLFVGICLGVAFHFVNRLFAHLGLLYDWNAMFAATLPTLLFLLAGITITVRQE 356
>gi|78222463|ref|YP_384210.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
gi|78193718|gb|ABB31485.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
Length = 418
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/359 (12%), Positives = 114/359 (31%), Gaps = 6/359 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL+RY FK + + ++ + L ++ + L +P
Sbjct: 30 MTSILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAK-GVPFLDVCRLILYMLP 88
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ +A G+ + LL P ++L + T +
Sbjct: 89 SFLLVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFIT 148
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
G + + ++ ++ + + + D
Sbjct: 149 VFALPWGNTSFKRFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHD 208
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ A N ++ L ++ + + + +D Q
Sbjct: 209 ERNPDEPMTIFASTGIIAAAPEEKNVRLHLVNGSIHRGIDPGGYRLVEFRSYDLHVDLRQ 268
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + ++ +R + + + +P + ++ + +
Sbjct: 269 NAKKNQFDEQDMTLKQLIASRGNRQNNEKFRRDVSIELHKRFALPFACIVFAMVGVPLGI 328
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS + + GI + Y +++ K+ + IL A +P + + + +L
Sbjct: 329 QNQRSGRAG-GFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLL 386
>gi|240014488|ref|ZP_04721401.1| hypothetical protein NgonD_07558 [Neisseria gonorrhoeae DGI18]
gi|240121010|ref|ZP_04733972.1| hypothetical protein NgonPI_04426 [Neisseria gonorrhoeae PID24-1]
Length = 356
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 129/361 (35%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 60 RAYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ + + +++ I + +LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAINGKISTDHTG-----LWLKEKNSIINVRGMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G I+ + T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|255038424|ref|YP_003089045.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
gi|254951180|gb|ACT95880.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
Length = 360
Score = 129 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 113/353 (32%), Gaps = 1/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K +L T ++ ++++ +ID E + + +P
Sbjct: 3 FKILDRYLIKNFLITYVFVAFVIVLIICMIDYTEKVDDFLDKKAPLREIIIDYYLNLIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I I P + + + + +E++ + GIS ++L P++ G+++LGI T + +
Sbjct: 63 WINYISPLMVFIATVFFTSRIAARTEIIAMLSSGISFGRMLRPYMAGAVVLGILTFIQVG 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ KI + + N + + + N +
Sbjct: 123 WVLPKANKIRNSFEKTYVKNEFYFSGHNVHITIAPDVYAYLESYNTTTQTGNKFTMETIK 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T + + + G I + F+
Sbjct: 183 GTKLLQKFYADKIVWQPKKGKWTLQNYQVRTLDSLGERLSRGTEIDTTINLSPKDFESDY 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
F + + E+ + + Y P ++ +T I VS SR
Sbjct: 243 NLFETFTLPELNAYIDLLKSRGADGLEVYLIEKYTRFTQPFAILILTAIGVIVSARKSRR 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+A G F+ + K ++G + + A +P I+ ++ +L+
Sbjct: 303 G-VGWQIALGFMLAFIYILFFLLSKGVAEAGTINTLFAVWLPNIVFSAIGVLL 354
>gi|294795168|ref|ZP_06760302.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
gi|294453960|gb|EFG22335.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
Length = 363
Score = 129 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLVLVMKAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +Q N Q + I ++ + AK E T
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD A+ ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ I F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSISFGIS-ILIIFIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGLYL 357
>gi|240079726|ref|ZP_04724269.1| hypothetical protein NgonF_00194 [Neisseria gonorrhoeae FA19]
gi|268595872|ref|ZP_06130039.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|293399674|ref|ZP_06643826.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
gi|268549660|gb|EEZ44679.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|291609925|gb|EFF39048.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
Length = 356
Score = 129 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 134/361 (37%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 60 RAYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ +++ I + +LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVRGMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G I+ + T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|59801588|ref|YP_208300.1| hypothetical protein NGO1229 [Neisseria gonorrhoeae FA 1090]
gi|59718483|gb|AAW89888.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
Length = 356
Score = 129 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 133/361 (36%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 60 RAYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ NG + W++ ++ I + +LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLK----EKTSIINVRGMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G I+ + T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|212212730|ref|YP_002303666.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
gi|212011140|gb|ACJ18521.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
Length = 355
Score = 129 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 129/360 (35%), Gaps = 11/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 1 MP-LLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 59 SDLYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E G + K+ W+ + I + + + +
Sbjct: 119 EVIAPQLEASGEETKLTALSKAVGYKALGDVWLHGAQSFIHI-----GSVDAKNKISEVS 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
I+ K++++ A L V + Q+ + L I D
Sbjct: 174 QFFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHL 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + +S + + + ++ R F+ + PL V M +
Sbjct: 234 QQGRKMVDRQSIVGLYHTIRYRQQAG-LQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + GI GF Y + F + P+ AAL+P +L +++L
Sbjct: 293 SLRQASMGWRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRY 352
>gi|225024724|ref|ZP_03713916.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
23834]
gi|224942519|gb|EEG23728.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
23834]
Length = 356
Score = 129 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 121/361 (33%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + TLY LL ++L ++ + +G+ NY++ + R+
Sbjct: 1 MKLLTRYLIRRLGTATLYALLALVVLFSFFEVINAVDDVGD-GNYTVLTLILYVGMRLFG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ + L SE + R G S+ +++ +L G+ V +
Sbjct: 60 HMYTLLPLAVLIGCLAALSQLASASEWTVIRTSGASLKRIIATVASVGLLAGLLGVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ L W + + I +++LP+ +
Sbjct: 120 WVAPYMEQRAERLR-LHAVQQTVSLGGSGLWFRQGSDN----INVREMLPDGRLLGIRIY 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ ++ + N LK+V + ++
Sbjct: 175 RYNQHAALESAWQASEGRVNGNGTWTLKQVARTHIAAERTQTEQLASVEWPSDVGVELLG 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + T ++ ++ PL+ M L+A + + +
Sbjct: 235 VLLVDTDQMSARSLKMYIDHLQSNGQQTAA-YATVWWRKLLYPLICTVMALVALAFTPQS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
SR + + GI G + + + + P AA++P + + ++ ++
Sbjct: 294 SRHGNIGVRLFLGICLGLAFHFAGLLSGYVAQLSSMPPFGAAILPGTVFAIAAAWLIRRQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|194097860|ref|YP_002000905.1| hypothetical protein NGK_0280 [Neisseria gonorrhoeae NCCP11945]
gi|239998341|ref|ZP_04718265.1| hypothetical protein Ngon3_02528 [Neisseria gonorrhoeae 35/02]
gi|240016934|ref|ZP_04723474.1| hypothetical protein NgonFA_07156 [Neisseria gonorrhoeae FA6140]
gi|240117143|ref|ZP_04731205.1| hypothetical protein NgonPID_01565 [Neisseria gonorrhoeae PID1]
gi|240127074|ref|ZP_04739735.1| hypothetical protein NgonS_00193 [Neisseria gonorrhoeae SK-93-1035]
gi|268594203|ref|ZP_06128370.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268602831|ref|ZP_06136998.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268685429|ref|ZP_06152291.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|193933150|gb|ACF28974.1| Conserved hypothetical integral membrane protein [Neisseria
gonorrhoeae NCCP11945]
gi|268547592|gb|EEZ43010.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268586962|gb|EEZ51638.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268625713|gb|EEZ58113.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|317163630|gb|ADV07171.1| hypothetical protein NGTW08_0197 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 356
Score = 129 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 129/361 (35%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 60 RAYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ + + +++ I + +LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAINGKISTGHTG-----LWLKEKNSIINVRGMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G I+ + T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|92115032|ref|YP_574960.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
gi|91798122|gb|ABE60261.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
Length = 354
Score = 129 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/357 (15%), Positives = 118/357 (33%), Gaps = 12/357 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + L L + + L VI + +Y + R+P
Sbjct: 6 FDRYIARNVLAAMLVVQVMILGLDLVISYINDLGDV--EGDYGALDVLLYLLMRLPWRFY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L+ ++ ++ ++EL + RA G S+ ++L + L+ I T+ + ++
Sbjct: 64 QYAPVGVLIGALIGLGSMASSNELTVMRASGRSLARILWGAMKPLGLVIIVTMAISEWVS 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ + + S+ W + + + +
Sbjct: 124 PVTEQYAEAWRLEQLEGEGAILSERGGWQREGDDFYRFGTIRADDVVIDVT------RYH 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKFS 241
+++ AD A+ + + V ++ +S +
Sbjct: 178 FDGTQLVSATHADRAVWEDGSWQWVNVDTTRFEDGRTVVDSQPRQAWETSFTPAQLNRLL 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S+S ++ + S+ + F+ +++P L + L+AAS R+
Sbjct: 238 RPLESQSPSDLWRYASYLGNQG-LEATQPLLYFWQKMLLPFTLAGLMLVAASFVFGPLRT 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
V YGI G + ++ P+ A L+P + L I++L +
Sbjct: 297 VAAGTRVFYGIIVGVSFKYLQDLLAPASMLFGFSPIFAVLVPTVACYVLGIVLLRRT 353
>gi|240113704|ref|ZP_04728194.1| hypothetical protein NgonM_09087 [Neisseria gonorrhoeae MS11]
gi|240116445|ref|ZP_04730507.1| hypothetical protein NgonPID1_09468 [Neisseria gonorrhoeae PID18]
gi|240122359|ref|ZP_04735315.1| hypothetical protein NgonP_00180 [Neisseria gonorrhoeae PID332]
gi|240125093|ref|ZP_04737979.1| hypothetical protein NgonSK_02542 [Neisseria gonorrhoeae SK-92-679]
gi|254494458|ref|ZP_05107629.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260441667|ref|ZP_05795483.1| hypothetical protein NgonDG_11387 [Neisseria gonorrhoeae DGI2]
gi|268599772|ref|ZP_06133939.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602117|ref|ZP_06136284.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268680946|ref|ZP_06147808.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268683688|ref|ZP_06150550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291045047|ref|ZP_06570755.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|226513498|gb|EEH62843.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268583903|gb|EEZ48579.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586248|gb|EEZ50924.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268621230|gb|EEZ53630.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268623972|gb|EEZ56372.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291011050|gb|EFE03047.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 356
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 130/361 (36%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 60 RAYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + ++ + + +++ I + +LP++ +
Sbjct: 120 WVAPTLSQKAENIKAAAINGKISTGHTG-----LWLKEKNSIINVRGMLPDHTLLGIKIW 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
DK + + + +LK + G I+ + T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|219871562|ref|YP_002475937.1| permease [Haemophilus parasuis SH0165]
gi|219691766|gb|ACL32989.1| permease, inner membrane protein yjgQ [Haemophilus parasuis SH0165]
Length = 355
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L + + L + L +I E +G +Y A +P
Sbjct: 1 MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVG-RGSYDGLHAAYYTLLTMPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ L SELV+ ++ G S +++ + +I L + T+++
Sbjct: 60 DIETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVITMIMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I ++ +
Sbjct: 120 WGVPQTEQYARNMRSIAQSGGSMLATQGGFWAKDGNDFIYIRQ------IQDERNLNNIL 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
I + + K A+ A L++V + + + I
Sbjct: 174 IYQFENQVLKSIKQAEKATYSEQGWLLQQVDKSEIHESGITQTRETDQAWKTSITPSKLG 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F + + R E F+ + P+ + M L+A S
Sbjct: 234 IVSLKPESLSISGLADYVGFLKDTGQ-DSKRFEITFWRKVFQPISMAVMMLLAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + L ALIP +L +S+ +L +
Sbjct: 293 LRSSTMGAKIVIGILAGFVFYVANIVFGNLSLIVSWLPVPIGALIPSLLCLSVVWWLLNK 352
Query: 358 KED 360
K D
Sbjct: 353 KRD 355
>gi|86607080|ref|YP_475843.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
gi|86555622|gb|ABD00580.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-3-3Ab]
Length = 392
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 116/361 (32%), Gaps = 10/361 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K ++ + G +++ L + + + + +P I+
Sbjct: 31 LEFYLCKEMIRPFFLGVAGGTVMMLGNQLFIYADLLVKK-GAPPLTILHILLLNLPAILV 89
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P L ++ + SE+ RA GI ++L P + +L+ +L I
Sbjct: 90 VTFPIAGLFATLLTLGRMGADSEITALRAAGIPYRKVLIPVLCIGLLVSGLALLTNEVIV 149
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ L D D +++ +
Sbjct: 150 PETNQKVKTLNTNLILAQDALPFDSEEIVRVDDDLWFHVGSIDPKTGWMRDLLILDRKAE 209
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NIPIKMDG 236
+ A A L+ VV +Y + N + +
Sbjct: 210 TGHLRYPQVISAQTAHQVGQAWHLQDVVIRRYDERGRTYYEGQVAEMELNIVNKLVGLVY 269
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K ++ + +E ++ + + R T+++ IPL L+AA + L
Sbjct: 270 AEKVPQEQRAAELWEQCQRYR-AEQRPSADVARCLTEYHLKFAIPLASFFAILVAAPLGL 328
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R VA I F+ Y ++++ ++ G+ + P AA +P ++ + +L
Sbjct: 329 QTVRQTGRYGSVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSLLW 388
Query: 357 Q 357
+
Sbjct: 389 R 389
>gi|218438808|ref|YP_002377137.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
gi|218171536|gb|ACK70269.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
Length = 434
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/374 (13%), Positives = 124/374 (33%), Gaps = 18/374 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
P ++ RY + + + + + +L+++ N++ E + + + RVP
Sbjct: 62 PSLMDRYLTSQLIPPFVLSVGIFTSMGVALANLSDLSNKVFEY-DLPVIDALKILLYRVP 120
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++ T +
Sbjct: 121 EFFAYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATVPAVILSVIVSGITFVFS 180
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ + + + + + L E F
Sbjct: 181 EGVVPETNYRATEILVKVLHEERNFWQNKDIFYPNYEEVKLANGQTFRQLKTLFYAEKFD 240
Query: 181 SITIDKKNKIIH---------RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ I D+ + Y K +
Sbjct: 241 GQKMRSLTIINWLGDHLNEIVVSDSAQWNANQNIWDFFNGTVYLIDTDKSYKEAVPFKHQ 300
Query: 232 IKMDG-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLV 285
F + ++ ++ S N R + + + I P + +
Sbjct: 301 QFPLPKEAFEFATQGRNPYEMNLFQALQYKRLLEASGDNKNVRFFDVRIHQKIAFPFVCL 360
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ A++ + + ++ + + F Y + SFG G+L P+ AA +P +
Sbjct: 361 VFGIMGAAIGAKPQQMSR-GTSLGLTVGIVFSYYMLNFFTGSFGMIGLLSPMMAAWLPNL 419
Query: 346 LTISLSILILLQKE 359
+ + IL + E
Sbjct: 420 FGVGIGGWILKKLE 433
>gi|42524172|ref|NP_969552.1| hypothetical protein Bd2760 [Bdellovibrio bacteriovorus HD100]
gi|39576380|emb|CAE80545.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 359
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 127/359 (35%), Gaps = 10/359 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY ++ + LL + L +D + M + + S P II
Sbjct: 4 IDRYTAWLFVGYFVGGLLVFLTLFTAVDA---MSTMVNYKDVAPSALVNYYLYSFPGIIS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q++P L+ I+ +LN+ +ELV A G+S+ ++ P ++ ++ + + +
Sbjct: 61 QLLPVACLLGVILTLTSLNKANELVALFASGMSLIRIAVPMLLLVAVISALGYMAADRVL 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K ++ + I +I ++ K + + + T
Sbjct: 121 PRATKQKNYILYYDLKKEPHRF-STIRTDRIWYRSKNSIFNIKTLNAKGDGAQGLTMYFF 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGFQK 239
+ ++ A I + L++ + + + ++ + Q
Sbjct: 180 SDEWDLVQMITAAQVKIQGAQWLLEQGTVTIFNKDSSFPLTSPFKTKSIVMAEDSKDLQS 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S E+ + + + E ++ I + M L+ S+ +
Sbjct: 240 AGQTADMMSQKELEHFIDKNKAAG-LDTVAYEVDYHSKISFAFAGLVMCLLGIPFSVGRA 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V + F Y + + G+ G L PVAAA P I+ + ++ ++L +
Sbjct: 299 RSGGTMLNVGICLALVFAYYVFYSSGITLGQHGTLPPVAAAWAPNIVMLGVAFVLLKKL 357
>gi|53803847|ref|YP_114531.1| hypothetical protein MCA2101 [Methylococcus capsulatus str. Bath]
gi|53757608|gb|AAU91899.1| putative membrane protein [Methylococcus capsulatus str. Bath]
Length = 356
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 126/362 (34%), Gaps = 12/362 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY +K + L + L+ + +GE NY + + P
Sbjct: 1 MNTLNRYIGWEVIKGAAFAALVLLALLNFFTFADELRDLGE-GNYGLGSIFLYLTLTSPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++IP L+ +VV N+ ELV +A G+S +++ + I++ + +V++
Sbjct: 60 SLYELIPSGALIGGLVVLGNMANNHELVAMQAAGVSRGRIVWAVLRAGIVISLISVVISE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ L ++ W++ N ++ + + D
Sbjct: 120 YVIPPAERAAQMLKATATRQQVASQTKYGVWIRDGNVYVNV-----REIENQERLGDIHI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDG 236
I + A A KL+ + ++ I K + + D
Sbjct: 175 FEISPDGRPALAMHAARASFDRGIWKLEDIGLTRFDPAGNAAIAEHKEQEDWSSVLSPDM 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + S ++ K M++ ++ E F+ +V PL+ +AM L+A
Sbjct: 235 LDVFIVRPENLSAQDLAKYMAYQTENAQKSLA-VEQAFWGRMVNPLITLAMLLLAIPFVF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + G+ G Y ++ G + + P ++ + ++
Sbjct: 294 NARRDVSSGQRIVIGVTIGLGFYLTNRMVSHLGLVYEVNAPLTMVTPPLVVLFAALAAFR 353
Query: 357 QK 358
++
Sbjct: 354 RR 355
>gi|322418227|ref|YP_004197450.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
gi|320124614|gb|ADW12174.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
Length = 387
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 111/360 (30%), Gaps = 4/360 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY F L ++ ++ + ++ + E + + + +P
Sbjct: 1 MKRTLYRYIFNEIPPPFLVGMVAFTFVLLMGRFLKLAEMVVEK-GVPFTDVLRMVSYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P +V S+L + + V
Sbjct: 60 SFWLFTIPMALLLSILLAFGRLSGDSEVTAMKSCGISLYGLLPPPLVFSLLASLACLWVT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
G L+ + N + I D
Sbjct: 120 VYAVPWGNSSFKKLMLEIARNSASVSIKEKVFNNAFPDMVIYADTLDTKAQNMEGVIVHD 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + +LK ++ + +++ +
Sbjct: 180 ERDPKAPTTIFAASGALFSDPKAHSMEFQLKNGSIHRSEDGANYRMVQFQEYILRVALAE 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S I + + + + + + +P + T + + ++
Sbjct: 240 PTPKGPRKASEMTIDELVHPPQVAAAKDVLARRLELHSRLALPFSCIVFTFVGVPLGIQN 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + + I Y ++ + G+ +L P + P +L + + ++
Sbjct: 300 RRSGK-ASGFSLSIAVILCYYIALSGFDTLGEKALLPPFLSGWGPNLLFLLAGGYLFVKT 358
>gi|302037952|ref|YP_003798274.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
gi|300606016|emb|CBK42349.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
defluvii]
Length = 363
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 128/362 (35%), Gaps = 8/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL+RY + Y+K G M + VID E + + ++P
Sbjct: 1 MNILFRYMLREYVKIFGMCFAGLMTIYLVIDFFEKVRRFLRY-DAHALDVLAYFVLKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I QI P L+ ++ L+R+ E+ R+ GIS++ + +PF+ +L + +
Sbjct: 60 ISYQIAPLAVLMATLLTIGLLSRSHEITAMRSCGISLYWITSPFLFLGTVLALVLFAFSS 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + S +S Q + + I P +
Sbjct: 120 TVIPLALAKAEQIKTTRIEKRAVPVSVKAAQPWVSLGGQTL-MNIDTIDPGGAVLRKIRL 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
+ ++ +A A+ L+ + + + + L + D F
Sbjct: 179 YRLSPTFELEQIAEAQRAVYSPQGWVLEDGIRRSFRQDGTVSVNSFQTEPLPLAQIPDDF 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E + I+ R T +Y I P + M ++ ++SL
Sbjct: 239 TTWLELDSETMTLPEIRAYVDRLHLGGTILPRLLTDYYGRIAFPCVTFIMVVVGIALSLR 298
Query: 298 FS--RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + + + + GF ++ ++ + G+ G L P+ A + ++ ++ +L
Sbjct: 299 RTGVRGSGMAMGIGQAMAVGFFYWSTHSVAIALGRGGALAPMLAGWMANLVFLTFGFYLL 358
Query: 356 LQ 357
L+
Sbjct: 359 LK 360
>gi|254432417|ref|ZP_05046120.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
7001]
gi|197626870|gb|EDY39429.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
7001]
Length = 386
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/367 (11%), Positives = 111/367 (30%), Gaps = 16/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + ++ + + + + + + +P +
Sbjct: 14 LLDRWMLGELIGPLVFGVAAFTAVSLSVGAVFELVRRVAESGLPLDVALQVLLLELPSFL 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL R++G+ W++L P VV ++ + + T +
Sbjct: 74 VLSFPMATLMATLLTYSKLSGNSELTALRSVGVPTWRMLVPAVVLAVAMTMLTFGFNEAV 133
Query: 124 ATSGEKIGIDLIQ---------QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
S + + +DN K + S + I + +
Sbjct: 134 VPSTLSQAEATLSRAIGRAVAGEQRDNVVYSKYGRVELPDGSTERGLTHIFYAQRFNKGV 193
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTL 228
+ + ++++ D + + + G + +
Sbjct: 194 MEDVTLLDLSRSAHRVMLTADRARWSSRDAQWEFLDGQVVGIGSSGSEAITSARFDRYLY 253
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAM 287
+ + K + S + +S R + P + +
Sbjct: 254 PLGNQPLKVAKLPKDANEMSIGQARTAERLLRESGDLRAARKLRVRIQEKFSFPAVCLVF 313
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LI +S+ + F Y + S G G L P+ +A +PV++
Sbjct: 314 GLIGSSLGARPHSRRSRSQGFGLTVLLIFGYYLVAFSFSSLGVKGTLTPLLSAWMPVLIG 373
Query: 348 ISLSILI 354
+ +++
Sbjct: 374 LGTGLVL 380
>gi|257058053|ref|YP_003135941.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
gi|256588219|gb|ACU99105.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
Length = 395
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/367 (12%), Positives = 112/367 (30%), Gaps = 16/367 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + ++ + L I N + + + +VP
Sbjct: 26 DRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPEFTAY 85
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P ++ ++ + L+ SEL+ RA G+S+ +L+ P + S+++ T + +
Sbjct: 86 ALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNELVVP 145
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ ++ ++ + + + K L E+F +
Sbjct: 146 TANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDGENMK 205
Query: 186 KKNKIIHRKDADL---------AIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIP 231
+ D+ + Y+ K++ L +
Sbjct: 206 ALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQLPLS 265
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
F + + + N R + + + P + V LI
Sbjct: 266 KAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICVVFGLI 325
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + ++ + F Y + ++ S G G + P AA +P + +++
Sbjct: 326 GSVLGARPQQMSR-STSFGLSVIIIFTYYVLGFLIGSLGLVGAISPFMAAWLPNFIGLAV 384
Query: 351 SILILLQ 357
+L +
Sbjct: 385 GGWLLYR 391
>gi|319902150|ref|YP_004161878.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
gi|319417181|gb|ADV44292.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
Length = 378
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 119/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 21 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPYF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 81 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFRRMLRPYMVSAAIIAVITFCLGSY 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I G I+ ++ + I S I D
Sbjct: 141 IIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFRD 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D ++ VK + + I K + + ++ F
Sbjct: 201 KQLVSHLTARSITYDTTSVHKWIVKDYMIRAMDGMKESITKGDRIDTTLFMEPADFLIMK 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + + E +++ I + +TLI S+S + ++
Sbjct: 261 NQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTK- 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP +L +++ +
Sbjct: 320 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAIWIPNVLYAFVALYL 372
>gi|254360523|ref|ZP_04976672.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|153091063|gb|EDN73068.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
Length = 365
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 128/362 (35%), Gaps = 5/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K L L + L +I E +G +Y + A +P
Sbjct: 6 MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVG-RGSYDGLKAAYYTFLTIPR 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ NL SELV+ +A G S +++ + ++ L IFT+++
Sbjct: 65 DIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRFRIGLAVMKTALPLVIFTMIIGE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I + +N + F
Sbjct: 125 WGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGNSFIYINHIKNEKSLDNVLIYQFGE 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + + + K++K + + +
Sbjct: 185 GQNKRELQSVLKARTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPSKLGI 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + + F + R E F+ + P+ + M L+A S
Sbjct: 245 VSLKPESLSISGLADYVGFLKDTGQ-DPKRFEITFWRKVFQPISMAVMMLLAISFIFGPL 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQK 358
RS+ + GI +GFM Y + + L ALIP +L + + +L +K
Sbjct: 304 RSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPIPVGALIPSLLCLIIVWWLLSKK 363
Query: 359 ED 360
D
Sbjct: 364 RD 365
>gi|90021021|ref|YP_526848.1| SecD export membrane protein [Saccharophagus degradans 2-40]
gi|89950621|gb|ABD80636.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
Length = 352
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 123/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY LL + L + DL + + + +Y+ S + +P
Sbjct: 1 MTK-LKRYIGHTIAAAVATVLLVILSLDAISDLVDQLSNLS--GDYTFSEAIIFVLLYIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P LV ++ L +SELV+ RA G+S+ QL+ + + VLV
Sbjct: 58 SSAYDYLPLSALVGCLIGLGVLASSSELVVMRAAGVSVLQLVWAVMRPVCVFIGVGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A ++ K + +++ W + N + N T
Sbjct: 118 EYVAPYSDQYADSRRALAKGHDRALQAERGVWNREGN-----EYMHFNAVLPNGKLYGIT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGF 237
D+K +++ D AI + + + I+ + + D
Sbjct: 173 RYIFDEKGQLLEASFVDSAIYQGEFWFEQDGEVTSFEDGRIEKFGFATREWRTEVSPDLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ ++ +K + + F+ PL + ++ +IA S L
Sbjct: 233 NVLVLDADELPMKRLYDYSTYLDKQG-LDSSEYKLAFWHKAFQPLAVASLVMIAISFILG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R V G+ G + T ++ P+ A LIP+++ + L + ++ +
Sbjct: 292 PLRQTTMGFRVFIGVIVGLVFQTSQKMLGPASIIMGFSPMFAVLIPIVVCLVLGVFLIRR 351
>gi|227538454|ref|ZP_03968503.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241736|gb|EEI91751.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 359
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 121/357 (33%), Gaps = 2/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K YL T ++ + +++ + D++E + + A +P
Sbjct: 1 MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P I + I + +E+V + G+S ++L P+++ + L+ T +
Sbjct: 61 YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120
Query: 122 PIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I K+ + + + SN I + + +
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISATHMQIDSNTYVYIDNFDTRQKIGYNFVLEKF 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K+ I R D V + + +K F+K+
Sbjct: 181 DGDRLKEKMIADRIRWDSVATKWKIENYTNRVINGLHERMDKADQKDTTLDMKPSDFEKY 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + + E+ K++ + Y + P +TL+ S+S + R
Sbjct: 241 DNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSKKVR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I F+ +I F G L P+ A +IP ++ +SL + ++ +
Sbjct: 301 GGIGLSLGLG-IALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356
>gi|253702060|ref|YP_003023249.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
gi|251776910|gb|ACT19491.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
Length = 391
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 116/360 (32%), Gaps = 4/360 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L ++ ++ + ++ + E S A + A +P
Sbjct: 5 MKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEK-GVPFSDVARMVAYLLP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P ++ + + + V
Sbjct: 64 PFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPLLFAACATLACLFVT 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
G L+ + + + I D
Sbjct: 124 VYAVPWGNSGFKKLVVEIAQSSAGISIKEKIFNNAFPDMVVYTQSLDTKAQTMGGVIVHD 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +L+ ++ + +++ +
Sbjct: 184 ERDPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEKGGYRMVQFQEYNLRVSLAE 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ S + + + + +++ + +P TL+A + ++
Sbjct: 244 GGNKSPRKVSEMTLDELLHPPKGAQQKEILSRGLEYHGRLALPFSCFVFTLLAIPLGIQN 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + + I + Y ++ K+ G+ G+L P+ A P ++ + I + +
Sbjct: 304 RRSGK-ASGFSLSIGVILLYYVALSAFKTLGERGMLPPLLAGWSPNLIFLMAGIYLFKKT 362
>gi|260655096|ref|ZP_05860584.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
gi|260630207|gb|EEX48401.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
Length = 339
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/339 (13%), Positives = 126/339 (37%), Gaps = 2/339 (0%)
Query: 22 LGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFN 81
+ +++ L + S++ L +P ++ +P L+ ++ F
Sbjct: 1 MAFSLIMVAGGLLFKLADLIIERGVSLAVAGRLFVYELPGVVVLTLPMSCLLGALLGFGA 60
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
++ SE+V +A GIS W++ P + ++++ I ++++ + G++ +++
Sbjct: 61 MSTNSEVVALKASGISFWRMNWPVIFWAVIISILSLILNETLVPLGQRAAENVMTFEVAK 120
Query: 142 GDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
++Q + + +++ + + + I
Sbjct: 121 QKPVLIKQEVFLQAPGGRVVYVGKLDPSSGSMSNVIVQELASGKLTRITVAPNGQWVSGI 180
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
Y + ++ E L I + S + S ++ + ++
Sbjct: 181 WYLTDGDVYEMKEPDGVAHLFHFAKQELPISLTPRQIANTSVKPDDLSASDLYRYIAAMK 240
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+F+F + +P V ++LI S+ + R + I F+ Y
Sbjct: 241 MQG-KDISALWVKFHFKLAVPWACVILSLIGTSLGVSHQRHGNRSVGFGQSILIVFLYYV 299
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++++ KS G++ L PV A +P I+ + ++ ++ + +
Sbjct: 300 LMSVGKSLGQTNALPPVVAGWLPNIIFLVAAVFLIRRAD 338
>gi|218245029|ref|YP_002370400.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|218165507|gb|ACK64244.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
Length = 395
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/367 (11%), Positives = 111/367 (30%), Gaps = 16/367 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + ++ + L I N + + + +VP
Sbjct: 26 DRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPEFTAY 85
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P ++ ++ + L+ SEL+ RA G+S+ +L+ P + S+++ T + +
Sbjct: 86 ALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNELVVP 145
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ ++ ++ + + + K L E+F +
Sbjct: 146 TANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDGENMK 205
Query: 186 KKNKIIHRKDADL---------AIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIP 231
+ D+ + Y+ K++ +
Sbjct: 206 ALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQFPLS 265
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
F + + + N R + + + P + V LI
Sbjct: 266 KAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICVVFGLI 325
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + ++ + F Y + ++ S G G + P AA +P + +++
Sbjct: 326 GSVLGARPQQMSR-STSFGLSVIIIFTYYVLGFLIGSLGLVGAISPFMAAWLPNFIGLAV 384
Query: 351 SILILLQ 357
+L +
Sbjct: 385 GGWLLYR 391
>gi|226943299|ref|YP_002798372.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226718226|gb|ACO77397.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 353
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 128/359 (35%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L RY + L L + L + + + +Y ++ A VP
Sbjct: 1 MGKLDRYIGASVSLSILAVLGVLVGLALLFSFVDELGDV--QGDYDLAAAAWYVFLTVPQ 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ +L +SEL + RA GIS+ +++ + ++L + L+
Sbjct: 59 RTYEMLPMGALIGCLIGLGSLASSSELTVIRASGISLGRIVWAVMKPMLVLMVLGGLLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E + G+ Q + W + N I + + T
Sbjct: 119 YLAPWAENKAEAHRSLAQGGGEAQTAKHGLWHRQGNEFVHI-----NAVQPGGVLYGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
D + ++ A A +L+ V ++ + + +I +
Sbjct: 174 YRFDDQRHMLWSSFARKAEFRGGNWQLEDVTTTRFLERSTEVAKAATEQWDILLSPQLLG 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + + + + +N R F+ ++ PL+ A+ L+A S
Sbjct: 234 TVVMDPEALSVTGLWHYIHYLAEQ-ELNNARYWLAFWGKVLQPLVTAALVLMAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ +GF+ ++ + P+ A L+P L L + +L +
Sbjct: 293 LRSVTLGQRLFTGVLAGFVFRMFQDLLGPSSQVFGFSPLLAVLLPAGLCALLGVYLLRR 351
>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 389
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 113/359 (31%), Gaps = 6/359 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L + ++ + L + + ++ + +P
Sbjct: 1 MKKTLYLYIFKEIPPPFLLGVATFTFVLLMGRLLRLAEMVVTK-GVPLADVLRMVFYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ +A G+S++ LL P +++ + +
Sbjct: 60 SFLLVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGAFIT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L+ + + + +
Sbjct: 120 VYAVPWGNTSFKKLLVEVVEARASLGIKEKIFNDDFPGLVIYTDRYNQQKQTMSGILIQD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + I R + ++L+ + Q ++ I ++
Sbjct: 180 ERDPLEPSTIYARSGVINSDPATKSIRLRLDNGSIHRTQGKTGYRLVEFRNYDLNINLNQ 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + ++ S + + +++ +P + L+ + +
Sbjct: 240 AAQTVNKNELDMSLAELRANLASGRFDAKMMRDMRLEYHRRFSLPFACLIFALVGMPLGI 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS + I Y +++ K+ G+ +L P+ A P +L +SL I +
Sbjct: 300 QNQRSGK-AAGFTMSIGLLLAYYIVLSAGKALGERELLSPLLAVWAPNLLFVSLGIYLF 357
>gi|303230241|ref|ZP_07317009.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
gi|303231004|ref|ZP_07317747.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302514386|gb|EFL56385.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302515167|gb|EFL57141.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
Length = 363
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 126/359 (35%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K ++ L+ + + Q + +P
Sbjct: 1 MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFFLAMPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ +++ F L+ TSE+V+ RA G+S +L P + ++L+ I V
Sbjct: 61 IILLTFPMSVLLGSLMAFSRLSSTSEIVVMRAGGLSFLRLAMPVYILALLISIGAVAFNE 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++++ ++ ++ N + K +
Sbjct: 121 FVVPRTNNMYQTIVREEIMKNASPQTQNHIVLKSMNGDNLSTLMYAKHYDSESKKLSMIT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVK------LKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + +N +V + V + + L I +
Sbjct: 181 VQQFNDKGELQQVENAENAEWNGQVWVMHSGIIYDVSAGEGVERTMKFKEQVLPIKSSPN 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ ++ + E + Y IPL L+ A +
Sbjct: 241 EVQQDQRKPEELTIKELRHQIK-AYKAAYTNSNKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L AA+IP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTWMAAMIPDTLGIIAGLYL 357
>gi|120611823|ref|YP_971501.1| permease [Acidovorax citrulli AAC00-1]
gi|120590287|gb|ABM33727.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
Length = 365
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/369 (14%), Positives = 130/369 (35%), Gaps = 16/369 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ ++ L + LG + L F D+ + +G + Y +S + + +P
Sbjct: 1 MKTIRWLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQGYQMSHALLYVSLGIPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I V ++SE I R G+ W L +V + + T V +
Sbjct: 61 HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWSALRTLLVLGLGFVMLTFTVGD 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + +++ + ++ G W++ + + + + + + +
Sbjct: 121 YLAPATDRLAQLVRARYL--GQITTGATGAWLKERQGDRSVAVNVRALRHDGG-MSNVRI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIPIK 233
D ++ A D +L+ V + R + + S I
Sbjct: 178 FEFDGDGRLASTVQAAAGEFGADAWELRDVKRSVFHRRGEAEAHVERLQEASFRWPTHIS 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D + + ++ + + + + E +F+ + P+ + M +++
Sbjct: 238 SDMVAASLLKPDRMATIDLFQYIRHLESNGQA-AQKYEIEFWRKVFYPMSCLVMVVLSLP 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI- 352
+ RS V G+ +G + + + G P A P I+ LS+
Sbjct: 297 FAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLG 356
Query: 353 ---LILLQK 358
++L++
Sbjct: 357 AFGWLVLRR 365
>gi|23013662|ref|ZP_00053531.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 312
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 136/311 (43%), Gaps = 6/311 (1%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
++P ++ I+PF ++ +V F+ L RT ELV++RA GIS WQ + P + + + GIF
Sbjct: 3 FLKLPQMLHTILPFAVMIGAMVCFWRLTRTHELVVARAAGISAWQFITPVLAVAGMFGIF 62
Query: 116 TVLVINPIATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ NP+A + L + + S++ W++ + ++ + ++ + E
Sbjct: 63 EITTFNPMAAAMYSRYERLQDELLAAKSSAFDISEVGLWLREPHDDGEMVVHSETVRQEG 122
Query: 174 HIWE--DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ D D+ + R A+ A + + ++++ + G+ + K +
Sbjct: 123 LVLHIRDAHFFLYDRPDHFYQRIAAETASLEDGAFEVRRAWVMEGGKPSVFKEKMRIPTQ 182
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ +D + SF+++ + F ++ F + L+ P++ M L+A
Sbjct: 183 LTLDRIHDNFASPETLSFWQLPGFIRFFERAG-FTANKHRLYLQSLLASPVLYCGMVLMA 241
Query: 292 ASVSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A SL + RS + G+ +GF +Y ++ + G S L AA P + +
Sbjct: 242 AVFSLRPNTRSGGLLARIGGGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLI 301
Query: 351 SILILLQKEDG 361
+ L EDG
Sbjct: 302 GLSGLFHLEDG 312
>gi|121594279|ref|YP_986175.1| permease [Acidovorax sp. JS42]
gi|120606359|gb|ABM42099.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 369
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 128/372 (34%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRV 59
+ R+ ++ + + L + L F D+ + +G Y +S + A +
Sbjct: 1 MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P ++ +++P L+ I V L ++SE I R G+ W+ L+ ++ + TV+V
Sbjct: 61 PQLLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWED 178
+ IA + EK + + G W++ I + + + P
Sbjct: 121 GDYIAPASEKAASLVKARRL--GQISTGATGAWLKERQGDHSIAVNVRAVDPNGAMRGVR 178
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI--------DKNSTTLNI 230
+ + + D L++V + + +
Sbjct: 179 VFEFDARGRVAATIQAEQATFDDARDAWNLQQVQRTLFEAEADGGMRVSRLQEPTLRWPT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I D + + E+ + + + R E +F+ + PL + M ++
Sbjct: 239 RISPDMVAASLLKPDKMATIELFRFVRHLEANGQ-SAQRYEIEFWRKVFYPLSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + RS V G+ +G + + + G P A P ++ L
Sbjct: 298 SLPFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVL 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLAAFGWLVLRR 369
>gi|282901534|ref|ZP_06309456.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
gi|281193577|gb|EFA68552.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
Length = 388
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/372 (14%), Positives = 132/372 (35%), Gaps = 17/372 (4%)
Query: 1 MP-GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP I+ RY L L+ + +V ID + I+ + ++
Sbjct: 13 MPFSIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKL 72
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P ++ P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T +
Sbjct: 73 PYVMVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRIVLTAVLLSGLVTGMTYIF 132
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I+ + +++ + + ++ G+ ++L ++F
Sbjct: 133 NEYISPAANYEASVTLERALKSDQPSFKQQNIYYPEYREEKTKDGGSSRLLARLFYADEF 192
Query: 180 TSITIDKKNKIIH---------RKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNS 225
+ I ++ Y Y + R +
Sbjct: 193 DGKKMKGLTIIDRSQAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEH 252
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLML 284
L +P K S + + + ++++ + + E + I P +
Sbjct: 253 QQLQLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFIC 312
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ L+ +++ R+ + I F+ Y ++++ + ++ IL P A +P
Sbjct: 313 IIFGLVGSAMGTIPQRTGR-GRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPN 371
Query: 345 ILTISLSILILL 356
+ + + ILIL+
Sbjct: 372 LCGLGMGILILM 383
>gi|256823037|ref|YP_003147000.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
gi|256796576|gb|ACV27232.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
Length = 354
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 125/359 (34%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K L T++ L I+ + L + G+ +Y G + P
Sbjct: 1 MNILRFYIGKTILATSVMTLFTLAIIRVLFSLIDESGDFGK-GSYQFVDGLAYSLLLSPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I + P L+ +I L SEL + RA G + Q++ + ++L F + +
Sbjct: 60 YIYEFFPMAILIGSIAGLGLLASHSELTVMRAAGKTTMQIVGSALSYGLILIAFAIFLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ D+ + K++ W++ + I + + + +
Sbjct: 120 YVAPKTTRMAEDIRNRAILGEQLLKAEQGVWVKDGSKMVHIDE-----MLGSDRMDGVSI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQ 238
D + K+ A A+I +L+ + G ++ I+MD
Sbjct: 175 YQFDSQQKLESIIHAPSALISEGVWRLQNGYQSYLTDTGINRERFDAMEWRTNIQMDNLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S+ + + + + + + F+ I+ PL M ++AAS
Sbjct: 235 VLSDDPETLDIMSLYRYREYLANNG-LDTQSYDLAFWRKIIQPLSTAIMIVLAASFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +G + + + A++P + + + +L +
Sbjct: 294 MRSVSMGARVLVGVLTGMAYFFAVRTFGPVSLVFGMPAFFGAILPPAIFAAGAWYLLRK 352
>gi|332665471|ref|YP_004448259.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
gi|332334285|gb|AEE51386.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
Length = 365
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/358 (14%), Positives = 136/358 (37%), Gaps = 8/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K +L T + +L +++ ++D +E + E P + + + I
Sbjct: 6 KILDWYIIKKFLSTFFFTVLIFLMIAVILDFSEKVEKFIEEPITTREIVLQYYPSFMLWI 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q+ TL+ I + +SE++ G+S +L+ + G+ L + +L +
Sbjct: 66 GGQLWSVCTLIAVIFFTSRMAYSSEIMSIFNAGVSFNRLMRSYFFGAAFLTLLYLLCTHY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH-----IWE 177
I GEK D++ ++ D D + + ++ + +K ++
Sbjct: 126 IMPVGEKYRQDIVHKYIDKSDDKGKTTNIHLFVAPNTKVFIGFYRKDDSTARDFRIEHFK 185
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ K ++ + + +++ ++ + TTL++ + F
Sbjct: 186 NQQLVSYTKADRAEYLPETRKWRLWDYSSHSFNGLKEDLKMHLAESKDTTLSL--YPEDF 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+S Q + + ++K + N+ + + + Y P+ + +T I +++
Sbjct: 244 VDYSSQQSMMTTPRLMKYIRQQNERGASNTRKYLFELYRRTADPVTIFILTFIGMAIASR 303
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R +A GI G + + F + A +P ++ +++ ++
Sbjct: 304 KVR-GGFGFHLALGIGVGAIFVFLSKFTNVFALGQTIPVWLGAWLPNLVFAFVALRLI 360
>gi|34540317|ref|NP_904796.1| hypothetical protein PG0501 [Porphyromonas gingivalis W83]
gi|34396629|gb|AAQ65695.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
Length = 360
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 2/350 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y K +L T ++ ++ + + V D+NE + + S VP
Sbjct: 7 LDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPYYAN 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ + G+S +L+ P+++ + ++ I T L+ + +
Sbjct: 67 LFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNSFVI 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ID ++ N Q ++ + + + +
Sbjct: 127 PPGNATRIDFQNKYIKNKKVQYAESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEFKGKQ 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R D + + +Y + I ++ F +
Sbjct: 187 LVSRLTADRIQYDSLYNWRIFNYRIR-HFGKYKETVESGSEMDTVIAVRPADFLVAEDDV 245
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + ++ +S + + + E + + +T+I AS+S +
Sbjct: 246 ETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASLSSRKVK-GGM 304
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I +A G+ F +T+ +F SG L P AA +P + +++ +
Sbjct: 305 GINIAIGLGLSFAYILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVSL 354
>gi|33598433|ref|NP_886076.1| hypothetical protein BPP3926 [Bordetella parapertussis 12822]
gi|33574562|emb|CAE39209.1| putative membrane protein [Bordetella parapertussis]
Length = 422
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/370 (17%), Positives = 121/370 (32%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 36 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 93
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 94 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 153
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + PQ I K L + +D T
Sbjct: 154 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLYEFRS 213
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----------------DKNSTTLN 229
++ A + L V E + L+
Sbjct: 214 DLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKELPARVTKVPELKLD 273
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + N R + +V P L+ M
Sbjct: 274 TTLSPERLLARVLTPERMSALTLVDYIEYLRH-NQLQYDRQVVALWRKLVYPFTLLVMIT 332
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+AA + +R V GI G + + + + G P AL P + +
Sbjct: 333 VAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALL 392
Query: 350 LSILILLQKE 359
L+ L E
Sbjct: 393 LAFGALSMME 402
>gi|85709345|ref|ZP_01040410.1| predicted permease [Erythrobacter sp. NAP1]
gi|85688055|gb|EAQ28059.1| predicted permease [Erythrobacter sp. NAP1]
Length = 365
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 140/357 (39%), Gaps = 3/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K ++ L L+ ++++ +DL ++ E + A+ R+P +I
Sbjct: 11 LTLYLAKMFVVRILAVLVMLVLVLMALDLLGSTGKILEPEGNGQAEIIKYASLRIPQLIA 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P+ L+ ++ LN+ SE+V +A G+S Q+L P ++ + ++ + + +
Sbjct: 71 RFLPYSVLLATLITLVTLNQNSEVVAMKAAGLSAHQVLAPLLLTAAVVALISFAFNERVV 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
T + ++S + + +++ + + E+ ++ T +
Sbjct: 131 TRANSTLKAWEA-VEYGPIPEQSGVRANVYLTDGDNILTASSLIGSGEDIELDNVTWYSR 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQKFSEQ 243
I + A A +L+ + G + + + + + S
Sbjct: 190 APGGIISEQIKATGATYAAPGWRLENPKRFDVGSATTEPIDDVVVGEGLTPEQIDLQSVD 249
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++SF+E+ + + + +++ + PL + M L+ + + +RS Q
Sbjct: 250 PDAQSFWELSETIDAYEAAGRR-TSEMRAKWWHRLSGPLSALLMPLLGSVAAFGLARSGQ 308
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + + G G P AA P L + + +L++ E+
Sbjct: 309 LFVRAVIGMALGFAYFVVDNAALAMGSFGGYPPFLAAWAPFFLFLLVGETVLIRTEE 365
>gi|300770003|ref|ZP_07079882.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300762479|gb|EFK59296.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 121/357 (33%), Gaps = 2/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K YL T ++ + +++ + D++E + + A +P
Sbjct: 1 MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P I + I + +E+V + G+S ++L P+++ + L+ T +
Sbjct: 61 YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120
Query: 122 PIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I K+ + + + SN I + + +
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISATHMQIDSNTYVYIDNFDTRQKIGYNFVLEKF 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K+ I R D V + + +K F+K+
Sbjct: 181 DADRLKEKMIADRIRWDSVATKWKIENYTNRVINGLNERMEKADQKDTTLDMKPSDFEKY 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + + E+ K++ + Y + P +TL+ S+S + R
Sbjct: 241 DNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSKKVR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I F+ +I F G L P+ A +IP ++ +SL + ++ +
Sbjct: 301 GGIGLSLGLG-IALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356
>gi|254491744|ref|ZP_05104923.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
DMS010]
gi|224463222|gb|EEF79492.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
DMS010]
Length = 354
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/356 (18%), Positives = 130/356 (36%), Gaps = 10/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + +TL LL + L +D + +G+ NY I A +P
Sbjct: 1 MKILQRYIAKNIIASTLLVLLVLLGLYTFMDFITELDDLGK-GNYQILDILSYLALTMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +++P L+ +++ NL SELV RA G+SI + ++ + LL + +++
Sbjct: 60 RIYELLPVAALMGSVIGLGNLASQSELVAMRAAGVSIKDINKAVLIVAGLLVVVALVMGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ + + +S+ W + N + + + + +
Sbjct: 120 VFRPIAEQKARQMQSVSQTGTVGSRSEYGFWTRDGN-----HFNHIERINADGSFSNVAI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
D K+++ A A D L VV+ ++ +S +
Sbjct: 175 YEFDDKHRLRILTQAVAAEYQQDSWILSDVVQSTIDEKGVEVSSVAHARWKSQLNPGMVN 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++++ + + N + E F+ +++PL M L+A
Sbjct: 235 IVVVPPEFLPVWDLLEYVQYLK-RNHQSVAQYELAFWSKMMMPLSTAVMVLLAVPFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G G + + G LLP A+ P ++ L+ L+
Sbjct: 294 LRSTPIGGRVLAGTLLGIGFHLFNQSFQHMGLVFGLLPWLASAFPTMVFAGLAWLM 349
>gi|296283031|ref|ZP_06861029.1| permease [Citromicrobium bathyomarinum JL354]
Length = 365
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 136/358 (37%), Gaps = 3/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K + L+ ++++ ++DL Q+ E+P + + + A+ RVP++I
Sbjct: 10 TLTLYLAKMFSLRIFAVLVMLVLVLMMLDLLSNSGQILEVPGNTEADLWLYASLRVPMLI 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P +V ++L+ + +
Sbjct: 70 QRFLPYSVLLATIITLVTLNQNSEVIAMKAAGLSAHQVLAPLIVTALLVAGISFAFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
T + P D T
Sbjct: 130 VTRATAQLTAWEATEFGALPDKPKSKGSIYLEDGQNILTARSYSGGGPAPT-LRDVTYYR 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQKFSE 242
+I + DA +A+ D ++ + G + + S T+ I +
Sbjct: 189 RSPTAEITQKVDAPMAVHGPDGWAMQNPSVFTVGTASLAQPSQLTVAPGITPATIELQEI 248
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
++ F+++ + ++ E ++ I PL V M ++ A +RS
Sbjct: 249 DPTTQPFWQLGSSIEAYRQAGR-DTEELEANYWHKISGPLAAVLMPILGAVAGFGLARSG 307
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q + G+ GF + I + G G P AA P +L + + +L++ E+
Sbjct: 308 QLFMRALIGMALGFAYFVIDNAALAMGDFGGYPPFLAAWAPFLLFLMIGETVLVRTEE 365
>gi|220935306|ref|YP_002514205.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
gi|219996616|gb|ACL73218.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
Length = 353
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 128/359 (35%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y + + TL +L L + +++G +Y + + V A VP
Sbjct: 1 MKRLDAYIARNVMGGTLLAMLVLGGLDTLFAFIAELDEIG-RNDYGLIQAVVYTALTVPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ P L+ +++ L SEL RA G+ I ++ + +++ + VL+
Sbjct: 60 RVYELFPTSVLLGSLLSLGALAANSELTAMRAAGVPIAGIVRSVLRAGLMMLVVVVLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ + Q + + W + + + + D +
Sbjct: 120 AVAPMSEQRAQTIKSQA-SGEEMYRGSAGLWAKDGQRFIQVGVVMPDL-----RLLDLSI 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
+D + ++ A A N L+ + G + + + F
Sbjct: 174 YELDAERRLSSMLRAGSASYQNGAWILRDIERSHLGEAGVTGEHVDEERWPRLLAPELFS 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + +++ + N + E F+ PL + M L+A
Sbjct: 234 VLAVEPRQMAATTLAQYVTYLRE-NDLDSASFELAFWMRFTTPLSSLVMLLLAVPFVFGS 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + G+ G + + + G L P+ +A +P ++ ++++L L +
Sbjct: 293 LRTGGAGQRLFIGLLIGVGFHLLNRTLNHMGLVYGLPPMLSATLPTLIFFAVAMLALRR 351
>gi|33603373|ref|NP_890933.1| hypothetical protein BB4399 [Bordetella bronchiseptica RB50]
gi|33577497|emb|CAE34762.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 422
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 121/370 (32%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 36 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 93
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 94 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 153
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + PQ I K L + +D T
Sbjct: 154 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLYEFRS 213
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----------------DKNSTTLN 229
++ A + L V E + L+
Sbjct: 214 DLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPELKLD 273
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + N R + +V P L+ M
Sbjct: 274 TTLSPERLLARVLTPERMSALTLVDYIEYLRH-NQLQYDRQVVALWRKLVYPFTLLVMIT 332
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + +R V GI G + + + + G P AL P + +
Sbjct: 333 IAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALL 392
Query: 350 LSILILLQKE 359
L+ L E
Sbjct: 393 LAFGALSMME 402
>gi|189500954|ref|YP_001960424.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189496395|gb|ACE04943.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 360
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/356 (17%), Positives = 132/356 (37%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y + Y T ++ + + L V+ L E + + + + +P
Sbjct: 1 MKLLDKYIARQYFTTYVFAGISFVSLFIVVSLIENLGSFIDK-GIEAEQIILYYWSLIPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P +L+ ++ + L+ +SEL + G + QLL PF+ ++L+ F +L
Sbjct: 60 TILLTSPISSLLASLYITGRLSGSSELTAMKTAGAGMHQLLKPFLAVALLVSFFNILNAG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + Q+ D + S + + + + IG+ + +
Sbjct: 120 WLYPKAAALKNRFETQYFDKTFENISSSNNLHILESRNRILSIGSLDQQNNTGLNISLET 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK---VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I K + +V ++ + TL + + +
Sbjct: 180 FEGPEIASRIDAKKISYDETLDRWILHETRTRVFSQNGMSYTLNPGNDTLTLSLSATSLR 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S Q + + + ++ + R +F+ + +PL V + L +S
Sbjct: 240 DLSIQPDEMDIMQHYRYIDEKREAGFSNLDRVIVKFHNKLALPLASVIVILTGVPLSARK 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS I +F+GF+ + + + G G+L PV AA +P +L +++ I I
Sbjct: 300 KRSG-LAIEFGISLFTGFIYLGLQRTLSTAGYRGLLDPVLAAWLPDLLFLAVGIAI 354
>gi|222110916|ref|YP_002553180.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
gi|221730360|gb|ACM33180.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
Length = 369
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 127/372 (34%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRV 59
+ R+ ++ + + L + L F D+ + +G Y +S + A +
Sbjct: 1 MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L+ ++ + TV+V
Sbjct: 61 PQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWED 178
+ IA + EK + + G W++ I + + + P
Sbjct: 121 GDYIAPASEKAASLVKARRL--GQISTGATGAWLKERQGDHSIAVNVRAVDPNGAMRGVR 178
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI--------DKNSTTLNI 230
+ + + D L++V + + +
Sbjct: 179 VFEFDARGRVAATIQAEQATFDDARDAWNLQQVERTLFEAEADGGMRVSRLQEPTLRWPT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I D + + E+ + + + R E +F+ + PL + M ++
Sbjct: 239 RISPDMVAASLLKPDKMATIELFRFVRHLEANGQ-SAQRYEIEFWRKVFYPLSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + RS V G+ +G + + + G P A P ++ L
Sbjct: 298 SLPFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVL 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLAAFGWLVLRR 369
>gi|86141356|ref|ZP_01059902.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
gi|85831915|gb|EAQ50370.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
Length = 358
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/360 (15%), Positives = 127/360 (35%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T + LL + + ++L E ++M A+
Sbjct: 1 MKILDWYILKRYLGTFITMLLLFIPIGITVNLAEKIDKML-ANEVPFVEIALYYLDFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S ++ L P+++G+ ++ + ++
Sbjct: 60 FANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAYILGT 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + + ++ NG + + QI++ +I + P + + ++FT
Sbjct: 120 YLAPAASQGFNEFTYEYLKNGKAARETRNVYRQINDND---YIYVSRFTPSSKMGQNFTL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGF 237
+ + + D + + + D + ++
Sbjct: 177 EHFENNTLQYKIQARSIVYRPEDTLYRLNGYKKRIVGKEGDILISEPKLDTLFSFDLEDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + R E Y +P+ +T+IA +VS
Sbjct: 237 TPLEYIAETLTTPRLREFIDKERARGSSAINRYEVVLYKRYSLPVSAYILTIIAVAVS-S 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R I +A GI F+ + + + P+ A +P +L L+I +L +
Sbjct: 296 MKRRGGMGINLALGISLAFIFIFFDKVFGTISEQSDFSPMVAVWLPNVLFGILAIYLLNR 355
>gi|225075101|ref|ZP_03718300.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
gi|224953585|gb|EEG34794.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
Length = 356
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 138/359 (38%), Gaps = 10/359 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 3 LISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGTTMAQYVLMQMPARA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +V L SEL + +A G+S ++L ++ I T + I
Sbjct: 62 YELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKILLILSQFGLIFAIATATLGEWI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++ NG + W++ +++ I +++LP++ +
Sbjct: 122 APVLSQKAENIKAAAI-NGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGIKIWAR 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKF 240
DK + + + +LK + ++ ++ I +K +
Sbjct: 177 NDKNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVL 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S E+ +S +N + ++ +V P+ M L+A + + + +R
Sbjct: 237 LVKPDQMSVGELTTYISHLENNNQ-NTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + GI G + + + + +LP A +P +L L++ ++ +E
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVLPFLAGALPTVLFALLAVYLIRCQE 354
>gi|121611823|ref|YP_999630.1| permease [Verminephrobacter eiseniae EF01-2]
gi|121556463|gb|ABM60612.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
EF01-2]
Length = 369
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 123/372 (33%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRV 59
+ R + L + G + L F DL + +G Y +S + A +
Sbjct: 1 MKTIRRLIHREALSAVCFVTAGFLALFFFFDLIDELRWVGLAGREGYHLSHALLFVALGI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L + + T V
Sbjct: 61 PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAV 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +A ++ + W++ + + + + P + +
Sbjct: 121 GDYLAPWTDRTAQRIKAHALGGLTS--GATGAWLKERQDRHSFAVNVRALTPNGGMRDVR 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---------TTLNI 230
D+ + + + +L +V ++ R ++
Sbjct: 179 IFEFDDQGRLVTQTRATVGRFATDGAWELAQVRRSRFARGDGQDDARVEHLDAPALRWPT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I D + + ++ + + N + R +F+ + PL + M ++
Sbjct: 239 RISADMVAASLLKPDRMATLDLFQFIRHLNANGQ-STQRYAIEFWRKLFYPLSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + RS V G+ +G + + + G P A P ++ L
Sbjct: 298 ALPFAYLHLRSGGTAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYSLL 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLAAFGWLVLRR 369
>gi|126667524|ref|ZP_01738494.1| predicted Permease [Marinobacter sp. ELB17]
gi|126627950|gb|EAZ98577.1| predicted Permease [Marinobacter sp. ELB17]
Length = 353
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 120/360 (33%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY K ++ + L + + G NY +P
Sbjct: 1 MHKI-DRYVMKTVGGAMFLVMVVVLSLDLIFAFIAELD--GTANNYQTLDALWYVFLTLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P + +V ++ +SEL + RA G+SI +++ + ++ + + V +
Sbjct: 58 RRIYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSIKRIVWSAMKPALFVVLLGVGIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+I G + W + N + + + +
Sbjct: 118 EYLAPPAERIAQSEKAVALGAGSNVAAASGLWHREGN-----VFIHMNAVQPSGVLFGIS 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
+++ +++ A+ AI D L+ V + + N +
Sbjct: 173 MFRFNEQRQLLAASFAERAIYQGDHWILENVQTTELAEQGTTRVTHNQLRWESGLSPSVL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ + ++ R F+ ++PL M L+A S
Sbjct: 233 SVLIVKPENLAMTGLLTYARYLDEQG-LSASRYWLAFWKKTLMPLGTAVMVLVAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ G + ++ P+ A L+P+ + + IL++ +
Sbjct: 292 PLRSVTMGFRVFTGLLVGLSFKYMQDLLGPMSVVYGFEPILAVLVPIAVNAGIGILLMRR 351
>gi|326316898|ref|YP_004234570.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373734|gb|ADX46003.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 365
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/369 (14%), Positives = 130/369 (35%), Gaps = 16/369 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ ++ L + LG + L F D+ + +G + Y +S + + +P
Sbjct: 1 MKTIRGLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQAYQMSHALLYVSLGIPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I V ++SE I R G+ W+ L +V + + T V +
Sbjct: 61 HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWRALRTLLVLGLGFVMLTFTVGD 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + +++ + ++ G W++ + + + + + + +
Sbjct: 121 YLAPATDRLAQLVRARYL--GQITTGATGAWLKERQGDRSVAVNVRALRHDGG-MSNVRI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIPIK 233
D ++ A D +L V + R + ++ I
Sbjct: 178 FEFDGDGRLASTLQAAAGEFGTDAWELSDVKRSVFHRRGEAEAHVERLQESRFRWPTHIS 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D + + ++ + + + + E +F+ + PL + M +++
Sbjct: 238 ADMVAASLLKPDRMATIDLFQYIRHLESNGQA-AQKYEIEFWRKVFYPLSCLVMVVLSLP 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI- 352
+ RS V G+ +G + + + G P A P I+ LS+
Sbjct: 297 FAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLG 356
Query: 353 ---LILLQK 358
++L++
Sbjct: 357 AFGWLVLRR 365
>gi|325860534|ref|ZP_08173638.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|327313657|ref|YP_004329094.1| permease [Prevotella denticola F0289]
gi|325481919|gb|EGC84948.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|326944618|gb|AEA20503.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
Length = 405
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y + ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 46 GILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIRRLMRPYMISCVLIAGLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + N I +
Sbjct: 166 VIPHGTVIRQNFESLYRNSKKNTSAENVQLYVAKNTTAYIQHYDNQYKRGYGFSLVKIKD 225
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
+ D +L + S + ++
Sbjct: 226 KKIVSHMTAMEIQYDTVADTKFHWRLSNWKMRTLKGLKEHIQSGASKDTVLLMEPTDLVY 285
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I S+S
Sbjct: 286 SKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSLSSR-K 344
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP I+ ++
Sbjct: 345 RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQADTPPLLAAWIPNIIFAVIAYF 398
>gi|158521442|ref|YP_001529312.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
gi|158510268|gb|ABW67235.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
Length = 391
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 116/359 (32%), Gaps = 12/359 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L ++ L + + ++ P +
Sbjct: 6 IDRYIMAELVPVFGVSLAVFTLVFLTHQLLD-ITNFIVNYGTGLGVVMLMLVYSTPYFLV 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+IP T++ ++ F ++ +E+V ++ G+S+++L P + + + T+L+
Sbjct: 65 YVIPISTMMAVLLTFLRMSGDNEIVALKSSGVSLYRLFYPVMGFCVAACLLTLLMTLWGL 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK---------ILPENHI 175
G+ L + + + N K I +
Sbjct: 125 PRGKVAFKQLAYTVVTSNPNLGIVDREFNTLFNGITLYVGQFDKKQRVLSDVFIEDQRSA 184
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ T + + + ++ + + I + L++
Sbjct: 185 GKPVTICAPSGTLDVDMVGQVVRLSLADGRMYQVDLRDRSSRVIRFETYDIHLDLERAGQ 244
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S E+ + + + + A + + IP V + L+A +
Sbjct: 245 VASTAARSEKEMSLAELFDHIQKAGAAGLPRGS-ARMELHKKFSIPFACVVLGLLAVPLG 303
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R + + + + Y +++ + G+SG L P A +P ++ L + +
Sbjct: 304 VQ-ARGRKTSSGIGLALVFFLLYYLVLSGGEILGESGFLHPALAMWLPDMVMGGLGLFL 361
>gi|213583965|ref|ZP_03365791.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 342
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 117/343 (34%), Gaps = 3/343 (0%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ L + L +I + + G+ NY + VP IQ P L+ +
Sbjct: 1 IMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFPMAALLGAL 59
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ L + SELV+ +A G + Q+ + +I L + T+ + +A GE++ +
Sbjct: 60 LGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRA 119
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
Q G + W + N I F + +
Sbjct: 120 QAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKF 179
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
D ++ + +I + S T + D + + S +
Sbjct: 180 DPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNY 239
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+ + S R + + I PL + M L+A S RS + V GI G
Sbjct: 240 VKYLKSSGQ-DAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFG 298
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
F+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 299 FVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 341
>gi|332530549|ref|ZP_08406487.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
gi|332039995|gb|EGI76383.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
Length = 372
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 124/365 (33%), Gaps = 12/365 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVPL 61
L R F+ L T + L + L D + + +G + P + + + + P
Sbjct: 6 TLRRLLFREILFTASFVTLAFLALFVFFDFIDQLSAVGRPDRPGFELPQALIYVVLLAPG 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I V L ++SE I R G+ W+ L + + T ++ +
Sbjct: 66 HLYELLPITVLIGTIYVMTRLAQSSEFTILRTSGLGPWRALAMLLTAGGVFASATFVIGD 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ Q++ G W++ P I +LP+ +
Sbjct: 126 YLSPWSNQVAQAYRAQFRKEGA-STIKGGAWLREREPYAKYGINIGALLPDGTLQRVRIY 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG--------RIPIDKNSTTLNIPIK 233
+ N + + + I + L V ++ S I
Sbjct: 185 EIDNAGNLVSTLQASTARINNDQSWTLMGVERTEFNAAGPDVRRIETTQLPSYRWPTGIS 244
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ + N + R E QF+ + PL + M ++A
Sbjct: 245 AEMISAAVLDPDRMNTVDLFLYIGHLED-NAQNAERYEIQFWKKVFYPLSCLVMVMMALP 303
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ R+ + V G+ +G + + ++ G+ P AA P ++ + S+
Sbjct: 304 FAYLHFRNQGISLYVFGGVMAGVTFFFLNSMFGYIGELRHWTPWIAAATPGLIFMLFSLA 363
Query: 354 ILLQK 358
Sbjct: 364 AFAWL 368
>gi|258648441|ref|ZP_05735910.1| putative membrane protein [Prevotella tannerae ATCC 51259]
gi|260851193|gb|EEX71062.1| putative membrane protein [Prevotella tannerae ATCC 51259]
Length = 428
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 118/358 (32%), Gaps = 5/358 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY +L T ++ + + + + D NE ++ + +P
Sbjct: 70 LDRYIIYKFLSTYIFLIGIIISIAIIFDYNEKIDKFEKAHVSWTKIAFDYYLNFIPYFSN 129
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ ++ G+S +LL P+++ + ++ + + + +
Sbjct: 130 LFSPLFVFIAVIFFTSKLADNSEIIAMKSTGMSFRRLLRPYMISAAIIALTSFGLGAYVI 189
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ ++ + S MQ + I + D
Sbjct: 190 PKGNVARVNFENRYIKKLNAPTSVENVQMQVDTGVVVYISRFDNETKSGYGFSLDKFYGK 249
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D ++ L++V + + + I ++ F
Sbjct: 250 KLIDHLTAQSIQYDTLAGKKNQWTLRQVQQRKMRGLRERISYADKVDTIIMMEPQDFFYV 309
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + + E+ + + E +++ +P +TLI S+S R
Sbjct: 310 RNQQETMTVPELRQFIDKQQMRGAAGVSLFEVEYHKRFAMPFAAFILTLIGVSLS-SQKR 368
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
N + GI F TI SF + P+ + IP +L + ++ + +
Sbjct: 369 KNGMGTSIGVGIALSFSYILFQTISSSFAVNANWSPMLSVWIPNLLFVLIAFGLYKRT 426
>gi|298206762|ref|YP_003714941.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
HTCC2559]
gi|83849393|gb|EAP87261.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
HTCC2559]
Length = 359
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 119/358 (33%), Gaps = 6/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T + LL + + ++L E +++ + A
Sbjct: 1 MKILDWYILKRYLGTFVTLLLLFIPIGITVNLAEKIDKIL-ANDVPFIEVAEYYLNFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S ++ L P+++G+ ++ + +++
Sbjct: 60 FANLLFPLFLFLSVIWFTSKLANNTEIIAFLSSGVSFYRFLRPYLIGATIVCLLALIMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A S K + + +G + + + N + I+
Sbjct: 120 YLAPSASKGFNEFKYTYLKSGGDNQQETKNVYRQINEDEVIYATNFN-PSRQSALNFTLE 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
D + + L + G I +P + D
Sbjct: 179 HFKDNVLEYKISASRLQYNKEDTTYTLTNFNKRLVGARGDSLIHYRKLDTILPFEFDELT 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + +F E+ K + + + R Y P+ +T+IA +VS
Sbjct: 239 PNSYVAETLNFNELNKFIEDEKRRGSGNLNRYLVVAYKRWSTPVSAYILTIIAVAVSA-M 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R I +A GI F + ++ + + P+ A P + L+I +L
Sbjct: 298 KRRGGMGINLAIGIAVAFSFVFLDKVLGTIAEQSDFSPLVAVWFPNVSFGILAIYLLY 355
>gi|257465008|ref|ZP_05629379.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
gi|257450668|gb|EEV24711.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
Length = 360
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 73/363 (20%), Positives = 130/363 (35%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K L L + L +I E +G+ +Y A +P
Sbjct: 6 MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGK-GSYDALLAAYYTFLTIPR 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 65 DVETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G + W + I + + S
Sbjct: 125 WGVPQTEQYARDMRSVAQSGGSMLSTSGGFWARDGENFVYIRR------IGSETQLNNLS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQ 238
I K ++ A A ND LKKV + + I
Sbjct: 179 IYHFDKKELKSITQAAEAKYTNDNWILKKVEKSTIEGNTIKQSKEKDQPWQTSITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ R E F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSITGLADYVGFLKETGQ-DPKRFEITFWRKVYQPISMAVMMLLAISFIFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GFM Y + + L ALIP ++ +S+ +L +
Sbjct: 298 LRSSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|330997889|ref|ZP_08321723.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
gi|329569493|gb|EGG51263.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
Length = 368
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 109/353 (30%), Gaps = 4/353 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D NE ++ A VP
Sbjct: 11 LDVYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYFSN 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ A G+S +L+ P+++ + ++ + T L+ +
Sbjct: 71 LFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAYVI 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ++ +K + + + + I + H D
Sbjct: 131 PKGSVTRLNFENTYKKKKRTEFAQNVQLQVDTGVIAFIEHFDGRTKTGYHFSLDKFVNKK 190
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKFS 241
+ D ++ + + + I ++ F
Sbjct: 191 LVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDFLLTR 250
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ + + + E ++ P +T+I S+S R
Sbjct: 251 NQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFILTIIGLSLSAR-KRK 309
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ T+ +F + P AA +P I+ ++ +
Sbjct: 310 GGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFL 362
>gi|294341187|emb|CAZ89588.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
Length = 365
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 124/364 (34%), Gaps = 10/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R+ + L L + L+F ID+ + +G+ P +S+S + A +P
Sbjct: 1 MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGK-PGFSLSGTLLHVALSMPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P TLV + +L +SE I R G+S L + + L + L+
Sbjct: 60 RAYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + ++ L +G + W++ + + K + D
Sbjct: 120 WLAPAAGQLSARLQA-GGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIP------IDKNSTTLNIPIKM 234
++ + +I A L V + + S +
Sbjct: 179 YVLNAQAQIAAELHAPSGQYEGGGTWMLHNVTRTELPQQTGAALKVTQLPSYRWRTSLSP 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S ++ + + +N R E Q + + P V M L+A
Sbjct: 239 SVLGVLLLSPDKMSAIDLWRYIQHLR-ANHQAAERYEIQLWKKLFYPFSAVVMLLLALPF 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +RS V GI G + T+ S G G P A +P++L L +++
Sbjct: 298 AYLHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIV 357
Query: 355 LLQK 358
+
Sbjct: 358 FAWQ 361
>gi|116747638|ref|YP_844325.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696702|gb|ABK15890.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
Length = 360
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 125/363 (34%), Gaps = 17/363 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY +++L + L L ++D E Q E + + P
Sbjct: 1 MRIIPRYVLRHFLPVFMLALFTFTSLYLIVDFFENMEQFIEKR-VPAADTIAYFLNKTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q IP L+ ++ L R EL+ A G+ + P V + + +++
Sbjct: 60 VAAQGIPMAALLGALITLGLLKRNRELIALEAAGVKTVTYVTPIVAAAFFIAAVHLVLGE 119
Query: 122 PIATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
++ S ++ + + + G W N + K+ E
Sbjct: 120 TVSRSMNQVSTKIWNEQVQRRKGHFSWGVENVWYHGQNVIYQVRFYDKR----TQTLEKV 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIK 233
+ +D +++ R DA + + ++ + ++ ++ + P
Sbjct: 176 SLFFLDPSFRLVQRLDARRFRWDGARWQAEQGLFLKFSESGTEQETFDQRAFTLQETPAD 235
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
G + E+ Y +K+ +++ + + + PL + + ++
Sbjct: 236 FSGLETIPEELDWLDLYRYAEKIRQEGYNSLPYIIE----LHLRVAFPLSAIVLAILGII 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++L S + V G+ G + + + + +G L PV ++ ++ ++
Sbjct: 292 IALRQSMHGGIALGVGIGLLVGSSYFVVQQLGCALAGAGALPPVVGVWAANVIFLAAAVY 351
Query: 354 ILL 356
+ +
Sbjct: 352 LWI 354
>gi|304382916|ref|ZP_07365398.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335941|gb|EFM02189.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 402
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 111/354 (31%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + ++ T ++ + + + V D+NE + E + VP
Sbjct: 43 KRLDRYIIRKFIGTYIFAIALIISISIVFDVNENLAKFSEYKAPLKAIVFDYYMNFVPYF 102
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A GIS +L+ P++ +L+ + +
Sbjct: 103 ANLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGISFRRLIRPYMFSCVLISGLSFYLSAY 162
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K+ ++ + + + I
Sbjct: 163 VIPHGTVIRQNFETLYKNKKKNTSAENVQLQVGKGVIAYMKLYDNTIKKGYGFCLYKFEN 222
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D K Q + S + ++
Sbjct: 223 KKLVSHMTASEIQYDTISDSKYHWKAMDWKIRQLRGLREKITSGITKDTVLQMEPTDLVY 282
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + +++ +S + + + +++ I +T+I S+S
Sbjct: 283 SKGQQETFTSPQLLDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIGVSLSSR-K 341
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + P+ AA +P I+ ++
Sbjct: 342 RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANTPPILAAWLPNIIFAFVAYF 395
>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
Length = 359
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/358 (20%), Positives = 147/358 (41%), Gaps = 8/358 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L +L + L ++D E + + + R+P+++
Sbjct: 3 ILDRYISREFLRFFLLVILSFLSLFLIVDFFEKLKMLINYS-ATFYQILAFFFFRIPMML 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ +++ F +L++ SE+V RA G+S+++ P ++ S L+ +FT + I
Sbjct: 62 SLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSELI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + Q I QI K PE++ T
Sbjct: 122 TPYANEKAEYIRKVEIEKKEIQ--GIFKQEQIWYRGTRGIYNFKLFDPEHNTLRGITLNY 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
+D+K +I R DA+ A+ ++ ++ ++ + L+ P F+
Sbjct: 180 MDRKMNLIMRVDAERAVWDRNQWVFYNLLIVRFDSAGFPVMERYGEKILDFPETPSDFRV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ ++E+ K + + R + I P + V + +I S SL+
Sbjct: 240 IQKDSEQMGYFELRKYVQKIRTEG-YDATRYLADLHGKIAFPFVCVLLAVIGISFSLKTE 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF + + S G+SG L P+ AA + +L ++++
Sbjct: 299 RSGGLAGSIFAGLIIGFSYWILFAFSMSLGRSGTLPPLLAAWLANLLFGLSALVLFKH 356
>gi|149378263|ref|ZP_01895975.1| predicted Permease [Marinobacter algicola DG893]
gi|149357460|gb|EDM45970.1| predicted Permease [Marinobacter algicola DG893]
Length = 353
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 49/360 (13%), Positives = 120/360 (33%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY +L + L + + +Y + + +P
Sbjct: 1 MRKI-DRYVMSTVGGAMFLVMLVVLSLDLIFAFIAELDDA--ENDYQTLQALLYVVMTLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P + +V + +SEL + RA G+S+ +++ + ++++ + VL+
Sbjct: 58 RRIYDYLPLGAFMGCLVGLGTMASSSELTVIRAAGVSLKRIVWSAMKPTLVVVVLGVLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E++ + G+ S W + + + + N + +
Sbjct: 118 EYVAPPAERMAQSQKTVAQGAGESIASASGIWHREGDVFMHL-----NAVQPNGVLHGVS 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
D + ++ A+ I D L+ V + + + +
Sbjct: 173 LFRFDDERWLVSASFAERGIYQGDHWLLENVATTRLSDEKTTQETHRALRWETGLSPSVL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S+ + + F+ +++PL M L+A S
Sbjct: 233 SVLIVKPEDLAISGLYTYASYLGEQG-LNAANYWLAFWKKVLMPLGTAVMVLVAISFVFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ G + + ++ PV A ++P+ + + +++ +
Sbjct: 292 PLRSVTMGFRVFTGLIVGLLFKYMQDLLGPMSLVFGFNPVLAIILPIAINAVVGAVLMKR 351
>gi|110833358|ref|YP_692217.1| hypothetical protein ABO_0497 [Alcanivorax borkumensis SK2]
gi|110646469|emb|CAL15945.1| membrane protein, putative [Alcanivorax borkumensis SK2]
Length = 353
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 121/359 (33%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RYF++ + TL L + L + + NY + T P
Sbjct: 1 MKLLKRYFWRAVMIPTLAILFIIVGLDCLFGFIYELEFL--RGNYQVMEALQFILTTTPR 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ ++ L + EL + RA G+S ++ + ++L I ++ +
Sbjct: 59 RFYEYMPMAILLGTLIGLSLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E++ + G+ +S W + I + N + T
Sbjct: 119 YLTPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPEFIHI-----NAVQPNGVLHGLTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
K+ + + AI + L+ + + K+ +
Sbjct: 174 YRFSDGQKLTETQYVNRAIYQGESWSLEGIQGTRLFADHVETYQKDQGEWQTELTPQLLS 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + ++++ + + F+ + +PL + M LIA S
Sbjct: 234 IVVLKPDNLALVKLLEYTRYLKRQG-LETADYMLSFWQKLFMPLATIGMVLIAISFVFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI +G + + P+ AA++P L + L I +L +
Sbjct: 293 LREVTMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAILPPSLCLVLGIWLLQR 351
>gi|307250355|ref|ZP_07532304.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857630|gb|EFM89737.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 360
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 6 MNILERYIGKTIITMVFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPS 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 65 DIKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I EN + S
Sbjct: 125 WGIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRH------IENERKLNNVS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
I + + AD A+ + L++V + + I
Sbjct: 179 IYHFEDKALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ + R + F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSISGLSDYVGFLKETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFVFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L +
Sbjct: 298 LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|163854870|ref|YP_001629168.1| hypothetical protein Bpet0565 [Bordetella petrii DSM 12804]
gi|163258598|emb|CAP40897.1| conserved hypothetical protein [Bordetella petrii]
Length = 392
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 118/370 (31%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALLYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + ++ L I L+ + +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWLITLPLMIGASLLSEFVTPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + D W + I L + E T
Sbjct: 124 AEIKSGEASLMFRGKASGTRMDSGYWFKEPTRDGGTRIINIAKLLADGNVEGVTLYEFKP 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVV-----------------EYQYGRIPIDKNSTTLN 229
++ A DK+ LK VV L+
Sbjct: 184 GLQLTTMSTAATGAFTRDKLVLKNVVETHIDDRAAQALADAKPPRTPPASVTKLPQRELD 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + N R + + P L+ M
Sbjct: 244 TTLSPERLLARVLTPERMSLNTLLDYIDYL-HHNQLDAGRQVVALWRKVSYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + +R V GI G + + + + G P AL P +
Sbjct: 303 IAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWLTALGPNVGATL 362
Query: 350 LSILILLQKE 359
L++ L E
Sbjct: 363 LALGALSLME 372
>gi|240948567|ref|ZP_04752940.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
gi|240297075|gb|EER47646.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
Length = 360
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 73/363 (20%), Positives = 130/363 (35%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K L L + L +I E +G+ +Y A +P
Sbjct: 6 MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGK-GSYDALLAAYYTFLTIPR 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 65 DVETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ D+ + G + W + I + + S
Sbjct: 125 WGVPQTEQYARDMRSVAQSGGSMLSTSGGFWARDGENFVYIRR------IGSETQLNNLS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQ 238
I K ++ A A ND LKKV + + I
Sbjct: 179 IYHFDKKELKSITQAAEAKYTNDSWILKKVEKSTIEGNSIKQSKEKDQPWQTSITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ R E F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSITGLADYVGFLKETGQ-DPKRFEITFWRKVYQPISMAVMMLLAISFIFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GFM Y + + L ALIP ++ +S+ +L +
Sbjct: 298 LRSSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|188995335|ref|YP_001929587.1| hypothetical protein PGN_1471 [Porphyromonas gingivalis ATCC 33277]
gi|188595015|dbj|BAG33990.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 363
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 2/350 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y K +L T ++ ++ + + V D+NE + + S VP
Sbjct: 10 LDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPYYAN 69
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ + G+S +L+ P+++ + ++ I T L+ + +
Sbjct: 70 LFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNSFVI 129
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ID ++ N Q ++ + + + +
Sbjct: 130 PPGNATRIDFQNKYIKNKKVQYAESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEFKGKQ 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R D + + +Y + I ++ F +
Sbjct: 190 LVSRLTADRIQYDSLYNWRIFNYRIR-HFGKYKETVESGSEMDTVIAVRPADFLVAEDDV 248
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + ++ +S + + + E + + +T+I AS+S +
Sbjct: 249 ETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASLSSRKVK-GGM 307
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I +A G+ F +T+ +F SG L P AA +P + +++ +
Sbjct: 308 GINIAIGLGLSFAYILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVFL 357
>gi|329962824|ref|ZP_08300709.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
gi|328529381|gb|EGF56294.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
Length = 378
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 57/353 (16%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 21 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPYF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 81 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFSLGSY 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I+ ++ + I SN I D
Sbjct: 141 VIPRGSVTRINFEDKYYKPRKANTARNIQLEVDSNVIAYIERFEDYSKTGYRFSLDKFRD 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A I+ +K + E + I K + + ++ F
Sbjct: 201 KQLVSHLTARSITYDTASIHKWTIKDYMIREMDGMKESITKGDRIDTTLFMEPADFLIMK 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + + E +++ I + +TLI S+S + ++
Sbjct: 261 NQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTK- 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP +L ++ +
Sbjct: 320 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAVWIPNVLYTFIAFYL 372
>gi|224539916|ref|ZP_03680455.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518470|gb|EEF87575.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
DSM 14838]
Length = 391
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/353 (16%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 34 KRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYLNFIPYF 93
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 94 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFFLGSY 153
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I G I+ ++ + I S I D
Sbjct: 154 IIPQGSVTRINFEDKYYKQRKSNTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 213
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ +K + E + I K + + ++ F
Sbjct: 214 KQLVSHLTARSITYDTASVHKWIIKDYMIREMDGMKENIVKGDRIDSTLFMEPADFLIMK 273
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + +S + + E +++ I + +TLI S+S + ++
Sbjct: 274 NQQEMMTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTK- 332
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP IL ++ +
Sbjct: 333 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAVWIPNILYAFIAFYL 385
>gi|189465688|ref|ZP_03014473.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
17393]
gi|189433952|gb|EDV02937.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
17393]
Length = 378
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/353 (16%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + VP
Sbjct: 21 KRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMSHEAPWKAIVFDYYLNFVPYF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 81 ANLFSPLFVFISVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGSY 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I+ ++ + I S I D
Sbjct: 141 VIPKGSVTRINFEDKYYKQRKSNTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ +K + E + I K + + ++ F
Sbjct: 201 KQLVSHLTARSITYDTASVHKWTIKDYMIREMDGMKENIVKGDRIDSILFMEPADFLIMK 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + E+ + +S + + E +++ I + +TLI S+S + ++
Sbjct: 261 NQQEMMTSPELSEYISRQRQRGFANIKEFELEYHKRIAMSFASFILTLIGVSLSSKKTK- 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP IL ++ +
Sbjct: 320 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVVAVWIPNILYAFIAFYL 372
>gi|148239646|ref|YP_001225033.1| permease [Synechococcus sp. WH 7803]
gi|147848185|emb|CAK23736.1| Predicted permease [Synechococcus sp. WH 7803]
Length = 388
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/366 (10%), Positives = 114/366 (31%), Gaps = 14/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L L+ + ++ + + + ++ + R+P +
Sbjct: 18 LLDRWLIGELLSPLLFAIAAFTVVSLSVGVMFELVRQIVESGLPVAIAVQVLLLRLPSFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
TL+ ++ + L+ SEL R++G++ +++ P ++ ++L+ T + + +
Sbjct: 78 VISFAMATLMATLLAYSRLSANSELTALRSVGVTATRMIVPALIVALLMSGLTFVFNDVV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---------FIGAKKILPENH 174
+ +++ + QD + + +
Sbjct: 138 VPRANRSAEITLRRALGKAIATEKGSNIVYSRFGRIQDPDGSSSKGLAQLFYARQFKDGV 197
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNI 230
+ + D + K + D + +
Sbjct: 198 MSGVTVLDFTRAGFTQMLVADRAVWNERQAKWQFFDGQILTLTPSGSTTSADFDQYLYPL 257
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMTL 289
+ + + + E ++ ++ R + + +P+ + L
Sbjct: 258 SAAPIRIAQLPKDANNMTVAEALRARELLEQAGDIKEARRLQVRIQEKFTLPMACLVFGL 317
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I AS+ + + + + Y + S G G L P+ AA PV+++++
Sbjct: 318 IGASLGAKPNSRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWSPVLISLA 377
Query: 350 LSILIL 355
+L
Sbjct: 378 GGGWLL 383
>gi|124009520|ref|ZP_01694195.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
gi|123984866|gb|EAY24834.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
Length = 371
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 127/366 (34%), Gaps = 13/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y K +L T + ++ + ++ +ID+ E ++ +P
Sbjct: 1 MLKRLDKYILKKFLVTFFFVVIILISIIVIIDITEKIGDFNKMDQTVWQIFTKYYLNFIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + + + V L +E++ + G+S ++L P+++GS L+ + T +I
Sbjct: 61 YWANSLSPILIFIATVFVTARLATHTEIIAILSSGVSFKRMLVPYLLGSSLIAVLTFYLI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI----- 175
+ ++ + + + N I
Sbjct: 121 GWVIPKANRVRLKFENTHIKDKFYFTDRNVHLKIAPNTFAYIESYDNTSHVGYKFTLENI 180
Query: 176 -WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------ 228
++ KK L K ++ ++ R T
Sbjct: 181 SGFEYDGKRQQKKLNSKVECRRILWDKDRKKWVMENYKITEFNRGDSLNYKITYGQSLDT 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ +K F+ + ++ ++ + + + Y + P ++ +T
Sbjct: 241 LMNLKPSDFESKYMFNEQLTSDQLEAYIAELKQRGVGKLETYLVERYERMAYPFAVIILT 300
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+I VS +R + +A G F+ +I + +S GK+G L P+ AA +P IL
Sbjct: 301 VIGVIVSSRKTREG-AGLQIAVGFGLAFIYVMLIMVSRSIGKNGELPPLVAAWMPNILFA 359
Query: 349 SLSILI 354
+ +++
Sbjct: 360 LIGLIM 365
>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 370
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/362 (16%), Positives = 124/362 (34%), Gaps = 12/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F L L + G +L+ V L + ++ E + L +P ++
Sbjct: 10 LLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVE-GSVPPLTVLRLLVLDLPEMV 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ L+ SE+ RA GI ++ P ++ + + + + N +
Sbjct: 69 VLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISNVL 128
Query: 124 ATSGEKIGIDLIQQ--------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ ++ + QQ K++ W I + +
Sbjct: 129 LPASKQQIRQIDQQALLAQATTPVQYDVFFKTEDNLWFFIRQVDPRLNTMQDVTILRVDP 188
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
++ + + L + L + +
Sbjct: 189 LPGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRK--PLQVSQDLA 246
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S E+ +++S +SN + T+F+ +PL LI+ +
Sbjct: 247 ALMQPPVPPSELSLPELAERISRLARSN-LNTQALRTEFHMRFSLPLASFFAVLISLPLG 305
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R V +GI F Y ++++ +S G+ G L P AAA IL + +++L
Sbjct: 306 STTARRVGRYGGVVFGILLVFGYYVVLSVSRSLGEVGALPPWAAAWSFNILFGGIGLVLL 365
Query: 356 LQ 357
+
Sbjct: 366 AR 367
>gi|256425866|ref|YP_003126519.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
gi|256040774|gb|ACU64318.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
Length = 359
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 55/358 (15%), Positives = 104/358 (29%), Gaps = 3/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I Y + ++ T +Y L+ +++ VID+ E + + +P
Sbjct: 1 MTKI-DWYILRKFIGTFIYSLMILLVISVVIDVTEKIDDFMSNNLSFYTIVVDYYFGFIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + P + I + +E+V G+S + L P+ VG+ L G L
Sbjct: 60 HIAALLFPLFIFISVIFFTSKMAYRTEIVAILCSGVSFRRFLRPYWVGAFLFGGLLWLGN 119
Query: 121 NPIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
KI ++ + S ++ +
Sbjct: 120 RWTVPVANKIRTKFEAEYVHKKKAQLNMYDKTIRVDSFTYVTFGSYDPNYKSGSNFLYED 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K R D + K TT+ IP+ +
Sbjct: 180 VRGQNIKFKMKADRISWDSVAGKWKLDYVTMRAINGLKERWWSKTDTTIKIPLNPKEMYE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + E+ ++ + Y +V +TLI ++ +
Sbjct: 240 EKNIQEAMTTPELDTYIAREELKGAEGLNTFYVEKYRRTASSGAVVILTLIGGIIASKKV 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A GI + F L P+ A IP L L+ + L+
Sbjct: 300 R-GGSGLHLAVGIVISASYIIFLQFSTVFSIKADLNPLLAVWIPNFLFGGLAFWLYLR 356
>gi|186681603|ref|YP_001864799.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
gi|186464055|gb|ACC79856.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
Length = 391
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 106/356 (29%), Gaps = 16/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + + + L ID + I + + P I
Sbjct: 20 IMDRYLTSELIAPFFFGVGAFSSLGVTIDAVFDLVRKIVESGLPIDIAIQVFLLKFPNFI 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S+++ T + I
Sbjct: 80 VLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRIVLTAVMLSLVVTGMTFVFNEQI 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---------PQQDIFIGAKKILPENH 174
A + + + + + + +
Sbjct: 140 APAANYQAGVTLDKALKSDKPAFKQQNIFYPEYQDVIQPDGSKNRILTRLFYADQFDGKR 199
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLN 229
+ K I ++ + Y + R + L
Sbjct: 200 MTGLTIIDRSTKNLNQIVVSESAQWNPSQNIWDFYNGTIYFVAADRSYRNIVRFEHQQLQ 259
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + S + + E + ++ R E + I +P + V
Sbjct: 260 LPRTPLSLAEKSRDYGEMNISEALDQLQVEYLGGDRQKIRKLEVRIQQKISLPFVCVVFG 319
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
L+ A++ R+ + + F Y I I + ++G L P A +P
Sbjct: 320 LVGAAMGSIPQRTGR-GTSFGISVVVIFSYYLIFFISGAIAQAGALSPFMGAWLPN 374
>gi|220907915|ref|YP_002483226.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
gi|219864526|gb|ACL44865.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
Length = 389
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 57/369 (15%), Positives = 118/369 (31%), Gaps = 10/369 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P +L RY L ++ + + + + Q +S L ++P
Sbjct: 19 LPLLLDRYVLSALLTAFVFSVAAFTGIGVAVGVVFDLVQDFADAQIPLSLLLQLLWLQLP 78
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P L+ ++ F L+ SELV +++G+ I++L+ P V+ +L+G
Sbjct: 79 YTISFCLPLGVLLASLSTFNRLSADSELVALQSVGVGIYRLVLPVVLFGLLVGGLAFGFN 138
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L+Q+ G + P ++I + T
Sbjct: 139 TSLVPASRSQSSQLLQEVVQQGQAVTQAQNIFYPEYGPDREIQRLFYARQFDGQQMYGLT 198
Query: 181 SITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLNIPIKM 234
+ + ++ + Y R + L IP
Sbjct: 199 VLDFSQTGVNQVITAESAVWDSTISVWTFTNGTIYLVDADGSYRNILQFTEQQLQIPRDP 258
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAAS 293
+ S E + + R + IP + + LI A
Sbjct: 259 LALATPKPSISEMSLAEARRYLEQLQPDGDPREIRKLQLYIQQQYAIPWQGLILGLIGAG 318
Query: 294 VSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ R + F Y + + + +SG L P+ AA L + +++
Sbjct: 319 LGIKSQPRRKSRGF--GLSLVIIFAQYVLSFLTAALARSGGLSPLVAAWSVNGLGLGVAL 376
Query: 353 LILLQKEDG 361
+LL+ G
Sbjct: 377 WLLLRAAHG 385
>gi|163756243|ref|ZP_02163358.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
gi|161323855|gb|EDP95189.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
Length = 359
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 126/357 (35%), Gaps = 4/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T LL + + ++D++E ++M + V
Sbjct: 1 MKILDWYIIKKYLLTFSVMLLLFVPIGIMVDISENIDKMLASK-APTDEIVLYYVNFVIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S + L PF+V + ++ I ++
Sbjct: 60 FANLLFPIFLFLSVIWFTSKLANDTEIIAILSSGVSYLRFLRPFLVAASIVAIVAFVMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + K + ++ G K+ D + + I++ + +
Sbjct: 120 YIVPNASKGFNEFRFEYIKKGRKKVRDNLEIYKQVTENDFIYLKSFSFDSKRGDNFTLEH 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ I + + KK + +++ P ++D
Sbjct: 180 FEDNVLEYKIQARSIKYNEDDSTYTLRGFKKRIVGAMNDSLVNQRKFDTIFPFEVDDLTP 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + ++ E+ K ++ +S + + Y +P+ +T+IA +VS
Sbjct: 240 VTYMAETLNYQELDKFIAKEKQSGSPNVNKHLLVKYKRWSLPITAFILTIIAVAVS-SMK 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R +A+GI F+ I + + P+ A +P ++ L++ +L
Sbjct: 299 RRGGMGFNLAFGIAIAFIYIFFDKIFGTMAEKSGFSPMLAVWVPNLVFGVLALYLLY 355
>gi|296137010|ref|YP_003644252.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
gi|295797132|gb|ADG31922.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
Length = 365
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/364 (17%), Positives = 126/364 (34%), Gaps = 10/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R+ + L L + L+F ID+ + +G+ P +S+S + A +P
Sbjct: 1 MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGK-PGFSLSGTLLHVALSMPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P TLV + +L +SE I R G+S L + + L + L+
Sbjct: 60 RAYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + ++ L +G + W++ + + K + D
Sbjct: 120 WLAPAAGQLSARLQA-GGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIP------IDKNSTTLNIPIKM 234
++ + +I A L+ V + + I S +
Sbjct: 179 YVLNAQAQIAAELHAPSGQYEGGGTWMLQNVTRTELPQQTGAALKVIQLPSYRWRTSLSP 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S ++ + + +N R E Q + + P V M L+A
Sbjct: 239 SVLGVLLLSPDKMSAIDLWRYIQHLR-ANHQAAERYEIQLWKKLFYPFSAVVMLLLALPF 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +RS V GI G + T+ S G G P A +P++L L +++
Sbjct: 298 AYLHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIV 357
Query: 355 LLQK 358
+
Sbjct: 358 FAWQ 361
>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 397
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 115/363 (31%), Gaps = 11/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ RY + + L ++ + + E+ + + + L +P
Sbjct: 4 PRIIHRYLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVSR-GVGLDVVGRLLLYTLPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP TL+ ++ F ++ E+V +A G+S + L P V +I + T +
Sbjct: 63 FFVFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAVLAICAWLVTSALAF 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
G +L+ Q +M ++
Sbjct: 123 WGLPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPGMVIYISRLPGQGQMTDLFIVDER 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG----- 236
+ R A ++L + G+ +
Sbjct: 183 EKGRHHTIVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQTAAFVTYDIAVDASTLS 242
Query: 237 --FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q+ ++ F E++ +M ++ +Y E + + +P + M LI +
Sbjct: 243 AAHQRTTKHEKEMYFGELLAEMDKL-PADSMQHYLIEMEMHKKFSVPFACLVMALIGLPL 301
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ VA + Y +++ SFGK+G P+ P +L +L++ +
Sbjct: 302 GMHS--RGGRSWGVAIALVVFLGYYLMLSAAWSFGKTGDYPPIVGMWAPNLLLGALAVEL 359
Query: 355 LLQ 357
+
Sbjct: 360 FRR 362
>gi|32035302|ref|ZP_00135309.1| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208576|ref|YP_001053801.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae L20]
gi|165976526|ref|YP_001652119.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|190150429|ref|YP_001968954.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250151|ref|ZP_07336353.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|303253324|ref|ZP_07339473.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248124|ref|ZP_07530152.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307252739|ref|ZP_07534630.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307257155|ref|ZP_07538927.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|307261583|ref|ZP_07543251.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|307263772|ref|ZP_07545378.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|126097368|gb|ABN74196.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165876627|gb|ABY69675.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189915560|gb|ACE61812.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648006|gb|EFL78213.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302651214|gb|EFL81368.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306855301|gb|EFM87476.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306859771|gb|EFM91793.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306864317|gb|EFM96228.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306868706|gb|EFN00515.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306870893|gb|EFN02631.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 360
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 6 MNILERYIGKTIITMIFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPS 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 65 DIKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I EN + S
Sbjct: 125 WGIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRH------IENERKLNNVS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
I + + AD A+ + L++V + + I
Sbjct: 179 IYHFEDKALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ + R + F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSISGLSDYVGFLKETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFVFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L +
Sbjct: 298 LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|113953439|ref|YP_730497.1| membrane protein, YjgP/YjgQ family protein [Synechococcus sp.
CC9311]
gi|113880790|gb|ABI45748.1| putative membrane protein, YjgP/YjgQ family protein [Synechococcus
sp. CC9311]
Length = 392
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 42/366 (11%), Positives = 113/366 (30%), Gaps = 14/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + L+ L ++ + + + N + + ++P +
Sbjct: 22 LIDRWLLGELIGPLLFALTAFTVVSLSVGVMFDLVRKIVESNLPWTIAVQVLLLKLPSFL 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ +++ + L+ SEL R++G++ +++ P + ++L+ + L + I
Sbjct: 82 VISFPMATLMASLLAYSRLSANSELTALRSVGVTASRMIAPAIALALLMTSLSFLFNDVI 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------QQDIFIGAKKILPENH 174
+ +Q+ + + + + +
Sbjct: 142 VPRTNRSAEFTLQRALGKAIAAEKGDDIVYSRFGRVAEPDGKSSKGLTQLFYAREFEDGT 201
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNI 230
+ + D K + D + +
Sbjct: 202 MIGVTVLDLSRFGFTQMLVADKAKWNQSQAKWEFNDGQILTLTPSGSTTSADFDRYLYPL 261
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTL 289
K + + + E I+ + + R + +P+ + L
Sbjct: 262 SPAPLRIAKLPKDANNMTVSEAIEAEQLLSDAGDRKEARRLRVRIQEKFTVPMACLVFGL 321
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I +S+ + + + F+ Y + S G G L P AA PV+++++
Sbjct: 322 IGSSLGAKPNSRTSRSQGFGISVVLIFVYYVLSFSFSSLGVKGTLAPFLAAWGPVLISLA 381
Query: 350 LSILIL 355
++L
Sbjct: 382 GGGVLL 387
>gi|321222550|gb|EFX47622.1| putative Permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 336
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 62/337 (18%), Positives = 115/337 (34%), Gaps = 3/337 (0%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+ L +I + + G+ NY + VP IQ P L+ ++ L
Sbjct: 1 MLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGML 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+ SELV+ +A G + Q+ + +I L + T+ + +A GE++ + Q G
Sbjct: 60 AQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGG 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ W + N I F + + D
Sbjct: 120 SLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFDPEHKV 179
Query: 203 NDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
++ + +I + S T + D + + S + + +
Sbjct: 180 WRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKS 239
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S R + + I PL + M L+A S RS + V GI GF+ Y +
Sbjct: 240 SGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVL 298
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I + P+ AL+P +S+ ++L+K
Sbjct: 299 DQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 335
>gi|226227979|ref|YP_002762085.1| hypothetical protein GAU_2573 [Gemmatimonas aurantiaca T-27]
gi|226091170|dbj|BAH39615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 362
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 55/354 (15%), Positives = 119/354 (33%), Gaps = 4/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + +LG +LVFVIDL + + E A+ +P +
Sbjct: 9 LDRYIATEFTRIFGVTILGFPVLVFVIDLVDNLRKYTERK-LPAKAVALSYFYWIPDTLF 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L + R SE+ ++A GIS ++ + P +V + L +
Sbjct: 68 MVLPAAVLFATVFSIGTFTRYSEITAAKASGISFYRFIAPILVMATLALGLDLAFGEIAP 127
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ L + + + + + K + I +
Sbjct: 128 PANAIRLDLLEGTSSSRANDRYNFAFASDRGRIYRIYTLNVRDKAVDNIEIEARGSDKKP 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSEQ 243
K D + + ++ + I +S + +
Sbjct: 188 GMVVAARRAKWNDARRDWRLDSGVVHIIPDRTRDIAFSFDSLIDRDFHETPAELRTTERD 247
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ F ++ + ++ +S + + I IP+ + + L A ++ R
Sbjct: 248 PSEMRFADLTRFITVLERSGA-DVNTLKVERMLKIAIPVTCLIIALFGAPLATSSQR-GG 305
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A + + + +I + K+ G GI+ P AA IP + +I++L +
Sbjct: 306 AAYGIAVSLATTVLFLLLIQLTKAIGGKGIVEPELAAWIPNAVVGLFAIVLLSR 359
>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 362
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 115/358 (32%), Gaps = 10/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y FK ++ + G +++ L + + + + +P I+
Sbjct: 4 YLFKEMIRPFFLGVAGGTVMMLGNQLFIYTDLLVKK-GAPPLTILHILLLNLPAILVVTF 62
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L ++ + SE+ RA GI ++ P + +L+ +L I
Sbjct: 63 PIAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALLTNEVIVPET 122
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L + D + +++ +
Sbjct: 123 NQKVKILNKNLILAQDALLFNPEEIVRVDDDLWFHVGSIDPKTGLMQDLLILDRKAETGH 182
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI--------KMDGFQK 239
+ A A +L+ VV +Y + + +K
Sbjct: 183 LRYPQVISAQTAQQVGQSWQLRDVVIRRYDEQGRTYYEGQVEEMQLNIVNKLVGLVYAEK 242
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ + +E ++ + + R T+++ IPL L+AA + L+
Sbjct: 243 VPQEQRAGELWEQCQRYR-AEQRPSADVARCLTEYHLKFAIPLASFFAILVAAPLGLQTV 301
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R VA I F+ Y ++++ ++ G+ + P AA +P ++ + +L +
Sbjct: 302 RQTGRYGGVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSLLWR 359
>gi|325269119|ref|ZP_08135739.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
16608]
gi|324988506|gb|EGC20469.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
16608]
Length = 405
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y + ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 46 GILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMISCVLIAGLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + N I +
Sbjct: 166 VIPHGTVIRQNFESLYRNSKKNTSAENVQLYVSKNTTAYIQHYDNQYKRGYGFSLVKIKD 225
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
+ D +L + S + ++
Sbjct: 226 KKIVSHMTAMEIQYDTVADTKFHWRLSNWKTRTLKGLKEHIQSGASKDTVLLMEPTDLVY 285
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I S+S
Sbjct: 286 SKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSLSSR-K 344
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP I+ ++
Sbjct: 345 RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQSDTPPLLAAWIPNIIFAVIAYF 398
>gi|307246020|ref|ZP_07528102.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255001|ref|ZP_07536819.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259437|ref|ZP_07541162.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852955|gb|EFM85178.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861874|gb|EFM93850.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866373|gb|EFM98236.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 360
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 6 MNILERYIGKTIIAMIFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPS 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 65 DIKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + G + W + N I EN + S
Sbjct: 125 WGIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRH------IENERKLNNVS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
I + + AD A+ + L++V + + I
Sbjct: 179 IYHFEDKALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ + R + F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSISGLSDYVGFLKETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFVFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L +
Sbjct: 298 LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|238023197|ref|ZP_04603623.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
gi|237865580|gb|EEP66720.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
Length = 355
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 128/361 (35%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY K + Y L + L IDL + +G+ Y++ ++P
Sbjct: 1 MNLITRYLIKRLAVASCYALFAILALYSFIDLISETSVVGQNQ-YTLWVATQYILMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P TL+ +V L SEL + + G+S ++ + S + I TVL+
Sbjct: 60 RAYQLMPLATLIGGLVALNQLANNSELAVIKTSGLSTANIIGIIIKFSAIFAIATVLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + G ++ + W++ ++ + ++
Sbjct: 120 WLAPELSRRGDEMKANARAGHIAAAH-NGIWIKQPGSMINV-----ASMLPDNTLVGIKI 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ A+ A + N +L P + I
Sbjct: 174 WHYNDQFQLTEAISAEKATVANGAWQLHNTHSTTLADNHAQPQQQAEREWQTDIGKPLLN 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF + + + + + N + ++ ++ P+ + M L+A + +
Sbjct: 234 VLLVKPEQMSFTALTQYIRYLKE-NHQQTQAYDVAWWNKLIYPIATMVMALVALAFTPNS 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + GI G + + + + + + +A++P ++ ++ ++
Sbjct: 293 GRHSNMGLKLFGGICLGLLFFFTGRLFGFTTQLYGVPAMLSAILPTAAFGCWAMYLIRKQ 352
Query: 359 E 359
E
Sbjct: 353 E 353
>gi|312131567|ref|YP_003998907.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
17132]
gi|311908113|gb|ADQ18554.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
17132]
Length = 360
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/356 (13%), Positives = 121/356 (33%), Gaps = 4/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY K +L T ++ + ++++ VID E + E + + P
Sbjct: 1 MTKI-DRYLIKRFLTTYVFAVFIIVLVILVIDFVEKNDDFMETKPSNHAIFFDYYLNLAP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P + + + + +E++ G S +L+ P+ +GS ++ I++ +++
Sbjct: 60 YWANYISPLMIFISTVFFTAKMASHTEIIAILGSGTSFRRLMLPYFIGSGIVAIYSFVMV 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I+ ++ N I N + +
Sbjct: 120 GWFLPKANVPRIEFENKYIHNDFFFTGRDIHLAVQKNVYAYLSSYDNSSNTAYDFTLEKV 179
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ R D ++ ++K+ + +I + F
Sbjct: 180 ENNRLVEKLSARRATYDDSLKKWKLYDYNIRKIGISKDEMTYEAITPLDTSIKLYPSDFG 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + ++ + N + ++Y P ++ ++++ VS
Sbjct: 240 NSKNRQETMTISQLEDYIDLINSRGAEGVETYKIEYYQRFATPFAVIILSIMGLIVSARK 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + +A G F+ + K ++G + P+ A +P I+ +S+++
Sbjct: 300 AR-GGVGLQIAIGFVLAFLYIIFYILSKGIAEAGSMNPILAVWLPNIVFSIISVVM 354
>gi|288928388|ref|ZP_06422235.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
gi|288331222|gb|EFC69806.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
Length = 390
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 31 KILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPYF 90
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L TSE++ A G+S +L+ P++V +L+ + +
Sbjct: 91 ANLFSPLFVFIAVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISCLSFYLSGY 150
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K++ ++ + I K D
Sbjct: 151 VIPHGTVIRQNFESMYKNSKKNTSAENVQLQVDRGVIAYIQHYDDKTKRGYGFSLDKFEN 210
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQK 239
+ D ++ + + + I ++
Sbjct: 211 KKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDKRDTLIMMEPADLVF 270
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + E +++ I +T I S+S
Sbjct: 271 SKGQQETFTNPELSSYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSLSSR-K 329
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + P+ AA IP +L ++
Sbjct: 330 RKGGMGLYLGIGLALSFGYILLQTVSATFAVNANTPPMLAAWIPNLLFAVVAYF 383
>gi|33240287|ref|NP_875229.1| putative permease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237814|gb|AAP99881.1| Unclassified ABC-type transport system permease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 403
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/375 (13%), Positives = 113/375 (30%), Gaps = 15/375 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L R+ F+ L + + ++ + + + ++ + ++P
Sbjct: 29 MIPLLDRWLFRELLPPFFFAISAFTVVSLSVGVMFDLVRKIVESGLALKFALQVFFLKLP 88
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ F L+ SE+ ++IGIS +++ + +L+ T +
Sbjct: 89 SFLVISFPMAILMATLLTFSRLSSNSEVKALKSIGISTKRMIVAAITLGLLMTGITFIFN 148
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----------NPQQDIFIGAKKIL 170
+ I S K +++ + + K
Sbjct: 149 DLIVPSANKSAEATLRRGLGVSMHSDYVTDIMYSRFGKIVDPSSNISRDGMTHLFYAKEF 208
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNST 226
+ + K + + I +
Sbjct: 209 QNKTMIDVTLLDFSRLGYKQMLVAKKGYWNNLEANWEFHDGNILTIAPNGGSTSISFENY 268
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLV 285
+ K + + + K S R E + +P+ V
Sbjct: 269 VYPLDSGPKKIAKIPKDANYMTLSDAYKAKDLYKLSGNLKEVRRMEVRIQEKFTLPMACV 328
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+LI +S++ + + A I Y + + S G SG L P A PVI
Sbjct: 329 VFSLIGSSLACSPNTRSTQGQGFALSIVLILAYYILSFVFSSLGVSGALSPFVGAWSPVI 388
Query: 346 LTISLSILILLQKED 360
+++S + +L + +D
Sbjct: 389 ISLSGGLYLLNKADD 403
>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
Length = 366
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + + L ++F+I++ E ++ +S A LAA VP +
Sbjct: 2 TLSLYIARRFGQAFLIVAGAFWGVLFLIEMVEQIRRLDPARGA-LSDAAHLAALSVPSTL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I P + ++ +V F L R+SELV+ RA G S ++L V ++L+G+ V V NPI
Sbjct: 61 YTIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPVTVALLIGVLLVAVGNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFT 180
++ K ++ Q + G + WM+ I A + + T
Sbjct: 121 VSATSKRAEEIEGQLRAEGRQTVSIGREGLWMRQGTADGGQAVIHAMRGNADATALYQVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKM 234
+ D K + R DA A + L + ++ R + +L +
Sbjct: 181 FLLFDAKAGPVRRIDAASAWLTPGAWVLSEAKDWPLGRSTNPERDATRAQTISLPSTLTA 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ ++ +E+ + + F R + PLML AM L+AA
Sbjct: 241 ESIADSFGAPSAMPIWELPGFIRALEAAG-FSARRHIVWLQVELAQPLMLAAMVLVAAGF 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R V + +G L+ + + + G +G + AA P + + L++ +
Sbjct: 300 TMRPARFGGTGGRVMLALLAGLALFFLRNVAQVLGDNGQIPAALAAWAPPAIALMLALTL 359
Query: 355 LLQKEDG 361
+LQ+E+G
Sbjct: 360 VLQQEEG 366
>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
stuttgartiensis]
Length = 357
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/356 (18%), Positives = 121/356 (33%), Gaps = 5/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + T LL +IDL + + E+ S + A P
Sbjct: 1 MFSRLDRYLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+II Q P ITLV +V L+R E++ + GIS++++L P V ++ +G +
Sbjct: 61 VIITQFFPAITLVAVGIVLVRLSRNKEILAMQVAGISLYRILLPIFVVTVFMGFASFGDQ 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + ++ + N + I I +
Sbjct: 121 EWIVP----RFAEKLEAMQQNTFDSDVQRNLLVHDDENNALIRIWKYSNKTQKMDSVFIL 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S + K + I N V K + R L+ +
Sbjct: 177 SRDENGKKRFTLNAKKAEWIGNNTWVLSKILKHVYDERGRWVAPVHRLDTLEFVSSVTPL 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + N + + F+ I L + + + + + F R
Sbjct: 237 ELGKKKLDSSLLSLEQLNELCEKEPDNPKNKVLFHSRIAYTLTHIVLLFLGIPLVVGFER 296
Query: 301 -SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
S + V+ I + + Y + I + G +G++ PV AA +P++L S+ I
Sbjct: 297 MSKNIFLRVSLCILACGVFYAVSFICSNLGNTGMVHPVLAAWMPIVLFGSVGIFFF 352
>gi|332879242|ref|ZP_08446939.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682662|gb|EGJ55562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 368
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 109/353 (30%), Gaps = 4/353 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D NE ++ A VP
Sbjct: 11 LDMYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYFSN 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ A G+S +L+ P+++ + ++ + T L+ +
Sbjct: 71 LFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAYVI 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ++ +K + + + + I + H D
Sbjct: 131 PKGSVTRLNFENIYKKKKKTEFAQNVQLQVDTGVIAFIEHFDGRTKTGYHFSLDKFVNKK 190
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKFS 241
+ D ++ + + + I ++ F
Sbjct: 191 LVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDFLLTR 250
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ + + + E ++ P +T+I S+S R
Sbjct: 251 NQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFILTIIGLSLSAR-KRK 309
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ T+ +F + P AA +P I+ ++ +
Sbjct: 310 GGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFL 362
>gi|260592209|ref|ZP_05857667.1| putative membrane protein [Prevotella veroralis F0319]
gi|260535843|gb|EEX18460.1| putative membrane protein [Prevotella veroralis F0319]
Length = 405
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 119/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y K ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 46 GILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ +++ T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMLSCVVIAGLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + N I +
Sbjct: 166 VIPHGTVIRQNFETLYRNSKKNTSAENVQLFVAKNTTAYIQNYDDQYKRGYGFSLVKIKN 225
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQK 239
+ D KL + S T + ++
Sbjct: 226 KKIVSHLTAMEIQYDTIADSKYHWKLSNWKIRTLKGLKEHIQSGTTKDTVLLMEPTDLVY 285
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I ++S
Sbjct: 286 SKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLALSSR-K 344
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F PV AA IP I+ ++
Sbjct: 345 RKGGMGLSLGIGLALSFSYIMLQTVSATFAIQDNTPPVLAAWIPNIIFAIIAYF 398
>gi|33591556|ref|NP_879200.1| hypothetical protein BP0325 [Bordetella pertussis Tohama I]
gi|33571198|emb|CAE40702.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332380956|gb|AEE65803.1| hypothetical protein BPTD_0320 [Bordetella pertussis CS]
Length = 392
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 121/370 (32%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + PQ I K L + +D T
Sbjct: 124 AEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLYEFRS 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----------------DKNSTTLN 229
++ A + L V E + L+
Sbjct: 184 DLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPELKLD 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + N R + +V P L+ M
Sbjct: 244 TTLSPERLLARVLTPERMSALTLVDYIEYLRH-NQLQYDRQVVALWRKLVYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + +R V GI G + + + + G P AL P + +
Sbjct: 303 IAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALL 362
Query: 350 LSILILLQKE 359
L+ L E
Sbjct: 363 LAFGALSMME 372
>gi|319762859|ref|YP_004126796.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
gi|317117420|gb|ADU99908.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
Length = 366
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/370 (14%), Positives = 119/370 (32%), Gaps = 17/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R ++ + + L + L F DL + +G Y +S + A +P
Sbjct: 1 MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGS-NGYRMSHALLFVALSLPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I V L ++SE I R G+ W+ L+ + T V +
Sbjct: 60 HLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLTLGCAFVALTFAVGD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFT 180
+A E+ + Q G W++ + + + P+ +
Sbjct: 120 YLAPISERAAALVRAQQL--GQISTGATGAWLKERQGDHSFAVNVRALTPDGHMRDVRVF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--------QYGRIPIDKNSTTLNIPI 232
+ D L++V + + L+ I
Sbjct: 178 EFDARGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRI 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
D + + + + + R E +F+ + PL + M +++
Sbjct: 238 SPDMVAASLLKPDKMATIGLFHYIRHLEANGQ-SAQRYEIEFWRKVFYPLSCLVMVVLSL 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 297 PFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSL 356
Query: 353 ----LILLQK 358
++L++
Sbjct: 357 AAFGWLVLRR 366
>gi|237736827|ref|ZP_04567308.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420689|gb|EEO35736.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 360
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 114/362 (31%), Gaps = 7/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y K ++K+ + L+ M + V L + + + ++ T +P
Sbjct: 1 MKIIDKYISKNFIKSFMLSLMAFMGIFIVSQLFRVVKYLSD-GRFTPGDAVYYIITLLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ +++ ++ E++ + GI +++ ++ S ++ V +
Sbjct: 60 TFIDVAPLAVLLGSMMTISSMASNLEIISLKTSGIKFRRIVLFPIIISAIISGVVFFVND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ KI DL +++ + + +
Sbjct: 120 TLYPISLKINRDLRSGEVQKRVAPLEKRNAFLRGEDSNYIYLMQKVNRETGFAENIEIVD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP----IKMDGF 237
+ + + KV + K V YG + + F
Sbjct: 180 LNKSFDKIERIITAPEGRYNFGKKVWMLKDVNIYYGDDNKKPETKEFFSDSKYGDNPEHF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + ++ K + + P ++ + ++
Sbjct: 240 ITLTVEPRTLTIKDLKKTIREMKSIGG-DTRELLVELGNRYSFPFASFVISFLGLALGGR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ R + + + G+ Y + ++ +G L P IP I+ + + I +L +
Sbjct: 299 YVR-GTSAVSLGICVLLGYGYYVVQASFEALSANGFLNPFVGGWIPNIMFLVVGIYLLNK 357
Query: 358 KE 359
E
Sbjct: 358 AE 359
>gi|330824939|ref|YP_004388242.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
gi|329310311|gb|AEB84726.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
Length = 366
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/370 (14%), Positives = 119/370 (32%), Gaps = 17/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R ++ + + L + L F DL + +G Y +S + A +P
Sbjct: 1 MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGS-NGYRMSHALLFVALSLPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I V L ++SE I R G+ W+ L+ + T V +
Sbjct: 60 HLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLALGCAFVALTFAVGD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFT 180
+A E+ + Q G W++ + + + P+ +
Sbjct: 120 YLAPISERAAALVRAQQL--GQISTGATGAWLKERQGDHSFAVNVRALTPDGHMRDVRVF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--------QYGRIPIDKNSTTLNIPI 232
+ D L++V + + L+ I
Sbjct: 178 EFDARGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRI 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
D + + + + + R E +F+ + PL + M +++
Sbjct: 238 SPDMVAASLLKPDKMATIGLFHYIRHLEANGQ-SAQRYEIEFWRKVFYPLSCLVMVVLSL 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 297 PFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSL 356
Query: 353 ----LILLQK 358
++L++
Sbjct: 357 AAFGWLVLRR 366
>gi|311694208|gb|ADP97081.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
Length = 345
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/350 (13%), Positives = 118/350 (33%), Gaps = 11/350 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ ++ + L + + + NY I +P I +P
Sbjct: 2 RSVGGAMFLVMMVVLSLDLIFAFIAELDDI--RNNYQILDALWYVFLTLPRRIYDYLPLG 59
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ +V ++ +SEL + RA G+S+ +++ + ++++ + VL+ +A E++
Sbjct: 60 AFMGCLVGLGSMASSSELTVVRAAGVSLKRIVWSAMKPALVIVVLGVLIGEYLAPPAERV 119
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
G S W + + + + N + + D ++
Sbjct: 120 AQSYKAVALGAGSNVASASGVWHKEGDSYIHL-----NAVQPNGVLHGVSRFQFDDDRQL 174
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQFASR 247
+ A+ AI D L+ V + + + + + +
Sbjct: 175 LAASFAERAIYQGDHWLLENVRTTSFEDDRTVRVDDRTLRWETGLSPGVLSVLIVKPENL 234
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + ++ + + + R F+ ++PL M L+A S RS
Sbjct: 235 SMTGLYTYATYLGEQS-LNASRYWLAFWKKALMPLGTAVMVLVAISFIFGPLRSVTMGFR 293
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V G+ G + + + P+ A L+P+ ++ +++ +
Sbjct: 294 VFTGLLVGLLFKYMQDFLGPMSLVYGFNPMLAVLVPIAVSAVAGGILMRR 343
>gi|160888237|ref|ZP_02069240.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
gi|317480118|ref|ZP_07939228.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
gi|156862183|gb|EDO55614.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
gi|316903665|gb|EFV25509.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
Length = 378
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 122/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 21 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPYF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 81 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGSY 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I+ ++ + I S I D +
Sbjct: 141 VIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFND 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D ++ K+K + + + I K + + ++ F
Sbjct: 201 KQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPADFLIMK 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + ++ + + E +++ I + +TLI S+S + ++
Sbjct: 261 NQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTK- 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP I+ ++ +
Sbjct: 320 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYL 372
>gi|302345342|ref|YP_003813695.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
gi|302149873|gb|ADK96135.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
Length = 405
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 119/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y K ++ T +Y +L + + V D NE ++ + + A VP
Sbjct: 46 GILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ IL+ T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGMSIRRLMRPYMISCILIAGLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + N I + T
Sbjct: 166 VIPHGTVIRQNFESLYRNSKKNTSAENVQLFVAKNTTAYIQHYDDQYKRGYGFSLVKTKN 225
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
+ D K+ + S + ++
Sbjct: 226 KKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEPTDLVY 285
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I S+S
Sbjct: 286 SKGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSLSSR-K 344
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP I+ ++
Sbjct: 345 RKGGMGLYLGIGLALSFGYIMLQTVSATFAIKDDTPPILAAWIPNIIFAIIAYF 398
>gi|212636934|ref|YP_002313459.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
gi|212558418|gb|ACJ30872.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
Length = 352
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 126/359 (35%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K + ++ LL L +I + +G YS+ + +P
Sbjct: 1 MRILDLYIAKVLISSSSLSLLILTGLSGIIKWVDQLRLVG-RGTYSMMDAGIYVLFLIPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ + L SELV+ ++ G+S Q+ + +I L I +L+
Sbjct: 60 DIEMFFPMAVLLGALTGMGMLASNSELVVMQSSGLSRLQIALSAMKTAIPLMILVMLLSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E ++ + G +S W + + +I + +++ D T
Sbjct: 120 YVAPVAEVRAKEIQRTQISGGSLIESTRGVWAKDGDLFVNIGG-----VVDSNNLRDITL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
D + A+ A +L V + + + +
Sbjct: 175 YEFDDTTNLTSTVHAETAKYMGKFWQLYDVRRTSLKSEQVVLTNLDEDKWISSLTPEKLS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S ++ + + +N + R E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPESLSIEGLLDYLDYLK-NNKQASARYELALWRKLMQPVTIAVMMLVALSFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y + L +A +P ++ + ++ + +
Sbjct: 294 LRTVTMGARVLLGVVAGFSFYICSEVFGPLSIVYGLPAFISAGMPALIFSAGALYYIRK 352
>gi|258591111|emb|CBE67406.1| putative Permease YjgP/YjgQ family protein [NC10 bacterium 'Dutch
sediment']
Length = 426
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/369 (11%), Positives = 123/369 (33%), Gaps = 16/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + + L ++ + + + + + + L + +P
Sbjct: 32 LIDRHLLREMAASFALGLGTFTFVLLMDQMMRLMDLIINK-GAPVGVVLRLISYILPFSF 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ + + ++ E ++ + G+S+++L+ P V+ ++ T+ + +
Sbjct: 91 TVTIPMSVLLAVLATYGRVSSEGEAIVLKTSGLSLYRLMAPGVLFGVVATFATLWISTLV 150
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
S K L Q + + ++K H
Sbjct: 151 QPSSTKAFKTLTHQLYHTHVLTALENGIFNTEYPGLAIYVDRSEKTDGTLHGILVIDQRN 210
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL------------KKVVEYQYGRIPIDKNSTTLNIP 231
+ II ++ L + + + +Y + + +
Sbjct: 211 QADQRLIIAQEGKLLNKDDETEAPIGLQLSRGTLQISSRDHPDRYRNLDFETYDLQILTG 270
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ Q + E+ +++ NK + + + +P+ + +++I
Sbjct: 271 GTVAETVARVRQSKEMNIGELRTEIARLNKDGGKAWP-LQVELHKKFSLPIACLILSMIG 329
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A +++ ++ + + +A + Y ++ +S G G + P P + ++
Sbjct: 330 APLAMRIKKAGR-GVSLALSVAFAVFYYILLATGESLGSRGRIDPALGVWFPNLTLGMIA 388
Query: 352 ILILLQKED 360
I ++L ED
Sbjct: 389 IGLVL-TED 396
>gi|297569344|ref|YP_003690688.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925259|gb|ADH86069.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 361
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/363 (16%), Positives = 132/363 (36%), Gaps = 7/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY F + + L G + + +ID E + + I ++P
Sbjct: 1 MIMLLDRYLFWQFTRNLALVLGGLVAIYLLIDFFERVDSFLD-AGLGIGTAITYLLLKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI +Q+IP L+ I+ LNR +EL+ ++ G+S+ +++ P ++ ++ +
Sbjct: 60 LIFEQLIPVCLLLAGIITLGVLNRHNELMALKSGGLSVRRIIRPLLLAALFFSGLALAAG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + + + +I + DF+
Sbjct: 120 QWLLPPTLAETNRLWYEEVRQQTPEGIERN--GRIYYRGAKGIYSFAQPDDPASGLPDFS 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDG 236
+++ ++ A +A + L V+ N T+ +P + +
Sbjct: 178 FTAWNEEYQLARLLTAAIAHWEAGRWTLLDGQLKVLTADDQYRTTIFNEMTIELPERPED 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F A R E++ + S + R E Q + + + + I +++
Sbjct: 238 FFLPPYALAERPLSELLARALAPEDSPRRYEARLELQQKISYIFLGLPLLLVGIPLLLAM 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + V F ++ + +I ++ +G L P AA + +L SL +L
Sbjct: 298 HRGRGRDLALAVPASCIMAFAVWGLWSICQALASAGHLSPALAAWLVHLLAGSLGFYFIL 357
Query: 357 QKE 359
+++
Sbjct: 358 RQD 360
>gi|261416540|ref|YP_003250223.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372996|gb|ACX75741.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327353|gb|ADL26554.1| putative membrane protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 366
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 118/364 (32%), Gaps = 15/364 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY +LK L + GA+++ VID + + +P I+
Sbjct: 3 FSRYLIWNFLKMFLIVVCGAVLIFVVIDFVGNIKTWLSR---DMKAVTDYYLSYLPYILY 59
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + N+ R E+ ++ G S ++ L P +L+ I + +
Sbjct: 60 LITPVALFIAVLASVGNMARHLEMSAMQSSGQSPFKTLLPIFFLGVLMSIGSYEMSEHWL 119
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-----KILPENHIWEDF 179
++++ + + +++ + K+ + +
Sbjct: 120 PDANHKRFEIMETNAQKRKNPRIKEKQDFTFIDSEKNSWFFKHYSGKNKLGRDVVLLVRE 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIK 233
+++ + R ++ + + + + + P+ + S +
Sbjct: 180 RGRLVERYDVRSIRWIEKDSVTKDGFWRFENGFHRVFKKDGSVDVFPVRQKSMKGKVNTH 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + ++ +S ET F M + + LI A+
Sbjct: 240 PNDLINERQLPDEMDSKMVKARIDVLRRSGE-DTRAMETALQFKYSAHWMNLIVLLIGAA 298
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ +SRS G+ F Y + I G++G L P AA + L+ +
Sbjct: 299 LCHRYSRSGGLSQKFGVGLLLVFSYYILERIGLKMGENGALSPFWAAWNSHFIYAGLAFV 358
Query: 354 ILLQ 357
+L +
Sbjct: 359 MLYR 362
>gi|16125407|ref|NP_419971.1| hypothetical protein CC_1155 [Caulobacter crescentus CB15]
gi|221234150|ref|YP_002516586.1| hypothetical protein CCNA_01213 [Caulobacter crescentus NA1000]
gi|13422473|gb|AAK23139.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963322|gb|ACL94678.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 353
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 131/358 (36%), Gaps = 11/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + L L M ++ ++DL ++ + + + ++ AA R+P + +
Sbjct: 3 LQLYVLRTVATRILGAALILMSVLQILDLLDVTSDILDR-GLGMAGVGYYAALRLPRLFE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ P L + F L R S +V RA GIS ++++ V ++ + + L +A
Sbjct: 62 QVAPIAVLAGGLFAFSQLARESAIVAMRASGISGYRIVGMAVPAAVAVMLLDALCGQVLA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ W N P + D+ IGA I T
Sbjct: 122 P----RADPTLADWWRNTTPVAERKEPVPRTFRAGADLVIGANASADGRTI-TGVTIFRR 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKFS 241
D K ++ + +A A L++ ++ ++ T+ ++ Q
Sbjct: 177 DSKGILVEKVEAPAARYDGKAWTLEQPKTTRFAGDLSQASTAAATSWPTALRPQDVQGLF 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + T P + + M L++A V+L RS
Sbjct: 237 GDDSMPTAASARRALENGG--SDRPESFYATHLQAAFASPFVSLVMLLLSAPVALANFRS 294
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
Q +++ G+ +G M ++ + G+SG L P A + +L++ L E
Sbjct: 295 GQGAVLLTGGLAAGLMFLVANGMLTALGESGALTPFLAVWAAPAIFGALAVRTFLALE 352
>gi|71908693|ref|YP_286280.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
gi|71848314|gb|AAZ47810.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
Length = 362
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 119/356 (33%), Gaps = 8/356 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + L + L + + +G+ YS+ A+ A +P ++ ++
Sbjct: 10 RYLIRETFASVFLVLAAFLALFAFFNFIDELRTVGK-AGYSVVHAALFVALSMPGLVYEL 68
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ + L R SE+ + RA G++ LL ++LL + T ++ +
Sbjct: 69 IPIATLIGTLYALSTLARHSEITVLRASGLATSDLLMTLFRAALLLALLTFVIGEAVVPF 128
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E++G ++ + + + FI +K P+ + +
Sbjct: 129 SERLGKEIRAKALS---TVIAQSGFDSGLWVKDGRSFINIRKAAPDEPLEGVRIYHFSQQ 185
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKFSEQ 243
D +L+ VV ST +
Sbjct: 186 NLLESVTDAQAADFEDPDLWRLRGVVRTVLEGDTSRVESTQTGEWRSTVTPTLLAALMVS 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + ++ N R E + +V PL + M +A +R
Sbjct: 246 PERMSLFGLLNYTKHL-TENKQKTERYEIALWKKVVYPLAALVMVALALPFGYSHNRVGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G+ G + Y + + + G P+ +A P L + ++ +L E
Sbjct: 305 VSLKIFAGVMLGILFYALNGLSSNLGAINSWSPIISATAPSGLFLLVATGMLWWVE 360
>gi|333030546|ref|ZP_08458607.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
gi|332741143|gb|EGJ71625.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
Length = 363
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 1 MPGIL---WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
M +L RY K +L T ++ + + + V D E ++ +
Sbjct: 1 MKKLLTRIDRYIIKKFLGTYIFAITLVISIAVVFDFTERMDRFMNNNAPWDAIIFDYYFN 60
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
VP + I L SE++ + G+S +L+ P+++ + ++ +FT
Sbjct: 61 FVPYFANLFSALFVFIAVIFFTSKLAENSEIIAMLSTGMSFSRLMKPYMISAAIIALFTF 120
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
++ + G ++ Q+ K + I I + +
Sbjct: 121 VLGGYVIPKGSVARVEFEDQYYKKRKKSSARNIQLQVEEGLIAYIDRYSDYNKTGYRVIL 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKM 234
D + + + LK + + +S + +
Sbjct: 181 DKFEGKKLSSHL--TARSITYDSTAVNMWTLKDYTVRDFDGLHEYISKGDSKDTVLAMDP 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F +F Q + E+ + + E +++ I + +T+I AS+
Sbjct: 239 SDFLEFQNQEQMMTNPELRAHIDKQKSRGFGNTKVFEIEYHKRIAMSFAAFILTIIGASL 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ + + G+ F TI +F SG++ P+ + IP IL ++ +
Sbjct: 299 SSRKAKRG-MGLHLGVGLALSFSYILFQTISGTFAVSGVVSPMVSMWIPNILYAFIAYYL 357
>gi|325279695|ref|YP_004252237.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
gi|324311504|gb|ADY32057.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
Length = 359
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 108/354 (30%), Gaps = 2/354 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y + +L T + L+ + +V V DL+E + E + +P
Sbjct: 1 MKKLDLYIIRKFLGTFFFSLVLILCIVVVFDLSEKLEKFLENEAPVKAIVFDYYKNFIPY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
T + I + SE++ + GIS + L P+++ + ++ I + L+
Sbjct: 61 FANVFSSLFTFISVIFFTSKMAYDSEIIAILSTGISFRRFLFPYLMSATVIAILSFLLGA 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + I+ +Q+ K I + + +
Sbjct: 121 FIIPNANEKRIEFEKQYMGKRYANKEQNIHRQIAPGTYIYMSSYSVASNVGYDFSIENFR 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
R D K + + F +
Sbjct: 181 GDTLVNKLTSSRITWDKENKKWVIHNWKLREIEGDKETYTTGQKLDTVMAFQPSEFSENP 240
Query: 242 EQFAS-RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ +F E+ + + + + + Y +I +T I S+S R
Sbjct: 241 KKIREQLTFPELDRYIDRMKMRGSSNVIEFQIEKYKMIANAFATFILTFIGVSISSRKIR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F + F +G + P+ A +P IL + + +
Sbjct: 301 -GGMGLHLGIGLLISFSYILFMQFSTVFATNGNMNPLLAVWLPNILFAIIGVFV 353
>gi|121997476|ref|YP_001002263.1| permease [Halorhodospira halophila SL1]
gi|121588881|gb|ABM61461.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
Length = 350
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 125/359 (34%), Gaps = 14/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + + +L L + L FV + + + + A P
Sbjct: 1 MRILTGYLARTVIAASLVALAAILALDFVFSMVDGVAD----DGLDTTTMLLKALLGAPA 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + PF TL+ ++ L EL RA G+S+ Q+ +VG ++L + V
Sbjct: 57 LAYEAFPFATLIGALMGLGGLAARQELTAMRAAGVSVVQIAGAVLVGGVILALLATAVGE 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ + + + + D W + E+
Sbjct: 117 LVVPPAERQAAAVRGLSEADELRTGPDGALWARDGRDFLRAERPRSASHLESVTLY---- 172
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ ++ R DAD A + + +L+ VV+ Y +++ + D
Sbjct: 173 --RFVEGQLTERIDADGAHYEDGQWRLEGVVKTVYADHRLERRELEAWAWQGALSPDVLA 230
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ E+ + + + +N + + + PL +AM L+ +
Sbjct: 231 VVVADPSTLPVPELWTYIQYLD-ANELDSGPYRLALWEKVATPLATLAMLLVTIPLVFTA 289
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G+ G + + + G + P +AL+PV+ +L + L+
Sbjct: 290 VRSSGAGQRIVIGVLVGVAFFLLNRALGQAGVVYGVPPSLSALLPVVAFAALGLWGTLR 348
>gi|270296760|ref|ZP_06202959.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272747|gb|EFA18610.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 378
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 122/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 21 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPYF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 81 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGSY 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I+ ++ + I S I D +
Sbjct: 141 VIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFND 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D ++ K+K + + + I K + + ++ F
Sbjct: 201 KQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPADFLIMK 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + +S + + E +++ I + +TLI S+S + ++
Sbjct: 261 NQQEMLTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTK- 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + PV A IP I+ ++ +
Sbjct: 320 GGMGLHLGIGLALSFSYILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYL 372
>gi|322514885|ref|ZP_08067902.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
gi|322119139|gb|EFX91289.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
Length = 360
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 137/363 (37%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 6 MNILERYIGKTIITMIFAVLLMSSGLVFIIKLAEEFKDVGK-GSYDALTATYYSLLMLPS 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 65 DIKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
E+ ++ + + W + N I EN + S
Sbjct: 125 WGIPQTEQYARNMRSIAQSGSSMLSTKGGFWAKDGNDFIYIRH------IENERKLNNLS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
I + + A AI L+ V I + + I
Sbjct: 179 IYHFEDKSLKSVTQAQNAIFNGKNWTLQNVQTSSIADNSIQQAKEVNKDWQTTITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + + F ++ ++ R + F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSISGLSDYVGFLKETGQ-NSKRFQIAFWRKVYQPISMAVMMLLAISFVFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L +
Sbjct: 298 LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|192358887|ref|YP_001981939.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
gi|190685052|gb|ACE82730.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
Length = 352
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 134/360 (37%), Gaps = 13/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I Y + LL + L F+ + ++ Y+ + + VP
Sbjct: 1 MRKI-TGYISRTVFSAIALTLLVFISLDFIFSFIDQLGKI--RGGYTSREAFIYMSLTVP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++IP+ L+ ++V L +SEL + RA G+S+ ++ + + + + V++
Sbjct: 58 RRLYELIPYSCLIGSLVGLGLLANSSELTVIRAAGVSVKRIAWMALRPAFVFIVAAVILG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E++ + +DN + ++ + N + + ++ + +LP I+
Sbjct: 118 EYVAPYTEQMADNRRLLVRDNWVRTTTN------MWNREGNEYMHVQAVLPSGVIYGLTR 171
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
+++ + + + V + G + + S P+K +
Sbjct: 172 YQFDEQRRLVAASYTKQAIYQEEGYWQEEDVAVTRIGEQGVSNDLLPSRRWETPLKPNLL 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + ++ + N+ F+ + PL +++ LIA S
Sbjct: 232 NILVMDPEDMSISNLNYYSNYLKEQNLRPGN-YALAFWQKTLQPLATMSLVLIAISFIFG 290
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI G + +M PV A LIP+++ I + + +L +
Sbjct: 291 PLRSVTMGQRIFTGIVFGVGFQLLQKLMGPASMVFGFAPVFAVLIPIVICILVGVFLLSR 350
>gi|229496640|ref|ZP_04390354.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
gi|229316537|gb|EEN82456.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
Length = 358
Score = 124 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 117/357 (32%), Gaps = 8/357 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + +L T +L + + V D+NE ++ VP
Sbjct: 1 MFLRLDRYIIRLFLGTYFSSILLILSVAIVFDINERISKFLNPECSLYEIVFHYYLNFVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P + I L +E++ A G+S +LL P++ + ++ + T L+
Sbjct: 61 YYANMFSPLFVFLSVIFFTSKLAEKTEIIAILASGVSFKRLLRPYLFSAAIVALLTFLLS 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + G ++ D ++ + + ++ +F +N +F
Sbjct: 121 SFVIPPGSRVRNDFQNKYFRDKRQTYAES----VQIQVSPSLFAYIHSYSADNKTGYNFM 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
+ + +L +YG I +K F
Sbjct: 177 LDKFEHNTIKSRLTAQTAEYDTLNTWRLYDYSITRYGAKRDTLERGTQLDTTINLKPQDF 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + + + E + +T+I S+S
Sbjct: 237 LISAVDAETYTTPVLHQYIGELKSRGATNVDLLEVELQKRYAAIPAAFILTIIGVSLSSR 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A GI F +T+ SF SG L P+ AA +P + ++I +
Sbjct: 297 -KRKGGTGLSLAIGIALSFTYILFLTLASSFSASGALSPIVAAQMPNAIYAIIAIFL 352
>gi|172036161|ref|YP_001802662.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171697615|gb|ACB50596.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 401
Score = 124 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/367 (12%), Positives = 117/367 (31%), Gaps = 16/367 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L+ + +L I N + + + + +VP
Sbjct: 32 DRYLASQLIGPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPEFTAY 91
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P ++ ++ + L+ SEL+ R G+S+++L+ P VV S+++ T LV +
Sbjct: 92 ALPISVMLSTLLTYGRLSNDSELIAFRGCGVSLYRLIVPAVVMSLVVTGVTFLVSELVVP 151
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------QQDIFIGAKKILPENHIW 176
+ ++ ++ + + ++ + + ++
Sbjct: 152 AANYRATAILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKRLKHLFFAEQFDGQNLK 211
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-- 234
++++ I D+ + YQ K +
Sbjct: 212 TLTVLEWLEERLNRIVVSDSATWNGQEETWDFFDGTIYQLAPDASYKEAYPFEHRQLPLT 271
Query: 235 ---DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLI 290
F + + + M R + + + P + V ++
Sbjct: 272 KAAFEFALQGRDPYEMNIIQARQYMKILKMMGDDKKLRMFQVRIQQKLAFPFICVVFGVV 331
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+++ + + F Y + ++ S G G++ PV A +P IL +++
Sbjct: 332 GSALG-SMPQQMSRATGFGLSVVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPNILGLAM 390
Query: 351 SILILLQ 357
+L +
Sbjct: 391 GGWLLYR 397
>gi|323144744|ref|ZP_08079321.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
gi|322415495|gb|EFY06252.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
Length = 355
Score = 124 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 134/360 (37%), Gaps = 11/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY K T L +L +I + +G + A VP
Sbjct: 3 FGILDRYIGKNVFFTILLVTFCLTLLTTLITFVDQMRYIG-RGSVDFLFLVSHVALEVPG 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ NL RTSEL++ ++IGIS ++ + I L + V +
Sbjct: 62 IVVLFFPVAVLLGGVIALGNLARTSELIVMQSIGISRTGIVLSALKTVIPLILVIVCLGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ + + NG+ ++ W++ + I +
Sbjct: 122 FVVPRVEQYAENRLNFASSNGNLSVTNDGLWLREGHSFIGIRYTMSDGSLLD------IV 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ + A + + K ++ V + + + + S ++ + + +
Sbjct: 176 RYEVEGKNLKAFSRAKSGVYSDGKWVMRDVRKTVFAENKVIRTSLAEEKWSLNLTPERVE 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + +I +++ ++N + Y + PL ++ M L+AAS
Sbjct: 236 VVGVKGYNLTARGLIDYINYLEENNQ-DASSYRLELYNKFMSPLTMIVMLLLAASTVFGP 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS V GI GF Y I F + P+ A +P ++ + L+I +L +K
Sbjct: 295 LRSMTMGARVLAGIALGFGFYLANQIGAPFALVYGIPPILGASLPTLVFMLLAIALLRRK 354
>gi|86147549|ref|ZP_01065859.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
gi|85834588|gb|EAQ52736.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
Length = 323
Score = 124 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 11/330 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVG-RGTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G + W + +N I + ++ ++
Sbjct: 120 QWGAPQAQKMARDLRTISVAGGSIISTQSGVWARDANDFIFIVK-----IDDDKLYGLNM 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDG 236
+ K ++ + ++ ++ V + + + + D
Sbjct: 175 WRYDENKALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSLAPDK 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + +S+ ++ R E + I P+ + M L+A S
Sbjct: 235 LAIVTVKPEELSLSGLYDYVSYLK-ASEQDAARYELALWRKITQPISIAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS + G+ +GF Y
Sbjct: 294 GPLRSVTMGARILSGVIAGFTFYISSEFFG 323
>gi|323345623|ref|ZP_08085846.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
33269]
gi|323093737|gb|EFZ36315.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
33269]
Length = 412
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 116/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K ++ T ++ +L + + V D NE ++ + + A +P
Sbjct: 53 KRLDRYIIKKFIGTYIFSILLIIAIAIVFDFNENLSKFTQYHAPLHAIIFDYYANFIPYY 112
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ +L+ + +
Sbjct: 113 SNLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGVSFRRLMRPYMISCVLISALSFYLSAY 172
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +++N +D + + I + D
Sbjct: 173 VIPHGTVIRQNFESLYRNNRKLTSADNVQLQVGTGIIAYIQHYDDRSKRGYGFSLDKFQE 232
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D ++ Q + S I ++
Sbjct: 233 KKLISHMTATEISYDTISESKYHWTVRNWKIRQLKGLREHITSGGEKDTLIQMEPTDLVY 292
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + ++ +S + + + +++ I +T+I S+S
Sbjct: 293 SKGQQETFTSPQLKDYISKQIDRGSGNVVQYQVEYHKRIAASFASFILTIIGVSLSSR-K 351
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + P+ AA +P IL ++
Sbjct: 352 RKGGMGLYLGIGMGLSFGYILLQTVSSTFAINAGAPPMLAAWMPNILFAFIAYF 405
>gi|325297714|ref|YP_004257631.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
gi|324317267|gb|ADY35158.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
Length = 371
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 119/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY +L T + + + + V D+NE ++ + +P
Sbjct: 14 KRLDRYIIVKFLGTYFFAIALIISISVVFDINENIDRFINNKAPLEAIVFDYYLNFIPYY 73
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +L+ P+++ + ++ T ++
Sbjct: 74 TNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIISAVTFMLGTE 133
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G + +++K + I S + D
Sbjct: 134 VIPKGSVTRLKFEEKYKKKKSADYARNIQLEVDSGVVAYMERYENYNKTGYRFSLDKFED 193
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D A + ++ + E + + I + I ++ F
Sbjct: 194 HKLVSHLTARRITYDTASYHKWIIRDYMIREMRGMKEVITRGERIDSIIKMEPQDFLITR 253
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + ++ + + + + E +++ I + +T I S+S +
Sbjct: 254 GQQETMTSPQLREYIQKQKQRGFANIKEFEVEYHRRIAMSFAAFILTAIGLSLSSRKVK- 312
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F TI +F +G + P A IP IL + ++I +
Sbjct: 313 GGMGLHLGIGLALSFSYILFQTISATFAINGNMPPALAIWIPNILYLFIAIYL 365
>gi|332969353|gb|EGK08378.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
Length = 354
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 133/361 (36%), Gaps = 12/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + Y L + L IDL +G+ NY+++ A ++P
Sbjct: 1 MKLLSRYIITRLSLMSAYALFAILSLYSFIDLLSEIGIVGQ--NYTMAVALQYIALQMPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P TL+ ++ L +SE + + G S +L+ + + +FT+L+
Sbjct: 59 RAYQLMPLATLIGGLIALNQLVSSSEWAVIKTSGWSSKRLIGTILQFGAIFAVFTILLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + G + + W++ N +I + + D
Sbjct: 119 WIAPELSRRGDAIKTLARSQQTTLVH-NGVWIKQPNSMINI-----GAMLPDKTLLDVKI 172
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ + ++ A A N + +L +V + I + T I+ +
Sbjct: 173 WQFNDQYQLTESVYAKQARFANGQWQLNQVQSSELADKQIRTSQQGQRTWQFNIQSNMLD 232
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF + + + + N + ++ +V P+ + M L+A + +
Sbjct: 233 VLMVKPEQMSFINLTQYIGYLKD-NKQQTEAYDVAWWNKLVYPIATMVMALVALAFTSNS 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GI G + + + + + +A++P + ++ +++++
Sbjct: 292 GRHGNLGLKLFGGICLGLLFFFTGRLFGFTTQLYRVPAFVSAVLPTLGFALWAMWLIVKQ 351
Query: 359 E 359
E
Sbjct: 352 E 352
>gi|254521231|ref|ZP_05133286.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
gi|219718822|gb|EED37347.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
Length = 363
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/364 (15%), Positives = 116/364 (31%), Gaps = 10/364 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
Y + T L + L V+ + +G+ Y++ A VP
Sbjct: 3 FDLYLGRTVFTTVLLTWAVLVGLDVVMAFSGEFKDIGK-NGYTLGHAAAWVLYTVPRRAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P ++ ++ L TSEL RA+G+S +L + LL V +
Sbjct: 62 TMFPTAAVIGALMGLGQLAATSELTALRALGLSRRRLSVSVAIALSLLTAVMVFSAETLG 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWEDFT 180
G+ L K D + W + + G ++++ + I D
Sbjct: 122 PWGQDRADALKASAKWGRDIATTRYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILRDVR 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
I + +I A A D L V +G + N +
Sbjct: 182 LYRIAEDGQIASITHAATAEHDRDGWVLTGVRRDTFGERSATRQEVAREPWNSRLDAGAL 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ + + ++ E ++ PL ++A+ L A +
Sbjct: 242 AAGIAKPRNLRITELRASIEYRERNG-LDARDFEDIYWSRWFYPLNVLALCLAAVPFAFG 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI + + + A +P I+ +++S +L +
Sbjct: 301 SLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAVS-GLLFR 359
Query: 358 KEDG 361
++ G
Sbjct: 360 RKSG 363
>gi|74316600|ref|YP_314340.1| hypothetical protein Tbd_0582 [Thiobacillus denitrificans ATCC
25259]
gi|74056095|gb|AAZ96535.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 356
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 128/361 (35%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY L + + LL ++L D+ + + Y + ++ VP
Sbjct: 1 MNLLARYLAGQVLAASGFMLLALLVLFAFFDVVQELGNL--RAGYGFGQATIVVLLNVPG 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +I+P L+ + L SE + R G+S W++ F V + L + +L+
Sbjct: 59 HLYEILPVAALIGTLFALARLVGNSEYAVMRVSGLSNWRVAAYFGVIGVWLALLVLLLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ + Q+ W++ FI ++++P+N +
Sbjct: 119 YVAPWSDQAAQRYKLSATRSVVAQQFRSGLWVK----DGSTFINVREVMPDNTLRGIEIY 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQ 238
+ R + +L+ VVE ++ + + +
Sbjct: 175 GFDQEGRLDWIRAAEIATWRGDKTWQLQTVVETRFSADGIRAQRSANLAWRSVLTPEILS 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + ++ + R E + + P ++ M LIA +++
Sbjct: 235 VLLVAPEKMSARALWRYIAHLKANGQK-ASRYELALWSKFISPFVIPIMMLIAMPFAIQS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V +GI +G + + + G + +P+++ + +++ +
Sbjct: 294 PRARGTSVKVFFGILAGLGFHLLSRLFGHLGLLNDWPAFVVSALPLLIFLGIALAGIRWV 353
Query: 359 E 359
+
Sbjct: 354 D 354
>gi|190572728|ref|YP_001970573.1| putative transmembrane permease [Stenotrophomonas maltophilia
K279a]
gi|190010650|emb|CAQ44259.1| putative transmembrane permease protein [Stenotrophomonas
maltophilia K279a]
Length = 368
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/367 (16%), Positives = 120/367 (32%), Gaps = 10/367 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P Y + T L + L V+ + +G+ Y++ A VP
Sbjct: 5 PMRFDLYLGQSVFTTVLLTWAVLVGLDVVMAFSGEFKDIGK-NGYTLGHAAAWVLYTVPR 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P ++ ++ L TSEL RA+G+S +L + LL VL
Sbjct: 64 RAYTMFPTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWE 177
+ G+ L K D + W + + G ++++ + I
Sbjct: 124 TLGPWGQDRADALKSSAKWGRDISTTRYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILR 183
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
D I + +I AD A D L V +G + N +
Sbjct: 184 DVRLYRIAEDGRIASLTHADTAEHDRDGWVLTGVRRDTFGERSATREEVAREPWNSKLDA 243
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S E+ + + ++ E ++ P+ ++A+ L A
Sbjct: 244 GALATGIAKPRNLSVAELRTSIEYRERNG-LDARDYEDVYWSRWFYPVNVLALCLAAVPF 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS + GI + + + A +P I+ +++S +
Sbjct: 303 AFGSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAIS-GL 361
Query: 355 LLQKEDG 361
L +++ G
Sbjct: 362 LFRRKSG 368
>gi|194364316|ref|YP_002026926.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
gi|194347120|gb|ACF50243.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
Length = 368
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 119/367 (32%), Gaps = 10/367 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P Y + T L + L V+ + +G+ YS+ A VP
Sbjct: 5 PMRFDLYLGQSVFTTVLLTWTVLVGLDVVMAFSGEFKDIGK-NGYSLGHAAAWVLYTVPR 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P ++ ++ L TSEL RA+G+S +L + LL VL
Sbjct: 64 RAYTFFPTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWE 177
+ G+ L K D + W + + G ++++ + I
Sbjct: 124 TLGPWGQDRADALKSSAKWGQDISTARYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILR 183
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
D I + +I A A ND L V +G + N +
Sbjct: 184 DVRLYRIAEDGQIASLTHAATAEHDNDGWVLTGVRRDTFGERSATREEVAREPWNSKLDA 243
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S E+ + + ++ E ++ P+ ++A+ L A
Sbjct: 244 GALATGIAKPRNLSVAELRTSIEYRERNG-LDARDYEDVYWSRWFYPVNVLALCLAAVPF 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS + GI + + + A +P I+ +++S +
Sbjct: 303 AFGSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAIS-GL 361
Query: 355 LLQKEDG 361
L +++ G
Sbjct: 362 LFRRKSG 368
>gi|67924129|ref|ZP_00517574.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
gi|67854019|gb|EAM49333.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
Length = 400
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 16/367 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L+ + +L I N + + + + +VP
Sbjct: 31 DRYIATQLINPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPEFTAY 90
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P ++ ++ + L+ SEL+ R G+S+++L+ P VV S+L+ T LV +
Sbjct: 91 ALPISVMLSTLLTYGRLSSDSELIAFRGCGVSLYRLIIPAVVMSLLVTGVTFLVSELVVP 150
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------QQDIFIGAKKILPENHIW 176
+ ++ ++ + + +Q + + ++
Sbjct: 151 AANYRATGILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKQLKHLFFAEKFDGQNLK 210
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-- 234
++ + I D+ + Y+ K +
Sbjct: 211 NLTVLEWLENRLNRIVVSDSATWNGQEETWDFFNGTLYKLAPDASYKEADPFEHRQLPLS 270
Query: 235 ---DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
F + + + M R + + + P + V +I
Sbjct: 271 KAAFEFALQGRDPYEMNIIQASQYMRILKMMGDDKKLRTFQVRIQQKLAFPFICVVFGVI 330
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S+ ++ + F Y + ++ S G G++ PV A +P IL + +
Sbjct: 331 GSSLG-STPQNMSRATGFGLSVVIIFAYYLLGFLIGSLGLMGLISPVLAGWLPNILGLVM 389
Query: 351 SILILLQ 357
+L +
Sbjct: 390 GGYLLYR 396
>gi|288940379|ref|YP_003442619.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
gi|288895751|gb|ADC61587.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
Length = 354
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 136/359 (37%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + TL L G + L+ V L++ + +G Y ++ + +P
Sbjct: 1 MRILDRYLAWAVMSGTLLTLAGLLPLMGVFILSDELDAIGTER-YGLAEAMLFTLLSLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q+ P TL+ ++ L SELV RA GIS+ +L+ ++G ++L V++
Sbjct: 60 YLYQLFPIATLIGALIGLGTLASRSELVAMRAAGISVGRLVRAALLGGLVLATIAVVLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ ++L + Q + W +I + + D
Sbjct: 120 LVAPIAEQRAVELRRLALSGEAAQLTPYGFWAIDDGAYVNI-----REIRSGTSLRDIDI 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
+D + A+ A + + L+ + + + + +
Sbjct: 175 YRVDAAAGTLEASHAEGARYEDGRWVLEGIALSRVDGEGVQVERVEHAEWDSMLDPGLLK 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + K + F + N E F+ ++ P++ ++M LIA + L
Sbjct: 235 VVVADPRALPVWGLYKYIRFMSV-NKQDASAYEIAFWSKVLHPVLTLSMILIAIPMLLGS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SRS + GI G + Y + + AA+ P +L I ++L+L +
Sbjct: 294 SRSTGMGRRMLAGILVGLVYYLVSRTFAYLALLFGMNAFLAAIAPPVLFIGAAMLLLRR 352
>gi|254786689|ref|YP_003074118.1| SecD export membrane protein [Teredinibacter turnerae T7901]
gi|237687240|gb|ACR14504.1| SecD export membrane protein [Teredinibacter turnerae T7901]
Length = 354
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/361 (16%), Positives = 116/361 (32%), Gaps = 13/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + + LL + L + DL + +Q+ +Y+ +P
Sbjct: 1 MRK-LQRYIAAQVWGSVMGVLLVIVSLDAIADLVDQLSQL--KGDYTFLEALFYVVLYIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P LV ++ L +SELV+ RA G+S+ QL+ + +L I LV
Sbjct: 58 SSVCDYLPLAALVGCLIGLGLLANSSELVVMRAAGVSVRQLIWSVMRPVLLFIIVGALVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ ++ + + +S+ W + + + N T
Sbjct: 118 EYVSPYTDQYADSRRDLLQGHERALQSERGLWFREGS-----EYMHFNAVLPNGRLYGIT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDG 236
++ AI D + Q+ + S I
Sbjct: 173 RYKFADGGRLEQASFIRSAIYQGDHWVEQGGEITQFDAEDKVDREEFISRNWYTEISPSL 232
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ K NI + F+ + PL +++ +IA S
Sbjct: 233 LNVLVLDPDELPMQRLYAYANYQEKQNI-DSSEYRLAFWQKALQPLATLSLVMIAISFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R V G+ G + T + P+ A LIP+ + L++
Sbjct: 292 GPLRQTTMGFRVFIGVIVGLVFQTSQKLFGPMSIIMGFSPMFAVLIPIAFCFAFGWLLIK 351
Query: 357 Q 357
+
Sbjct: 352 R 352
>gi|260912301|ref|ZP_05918852.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633602|gb|EEX51741.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 402
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 43 KILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPYF 102
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L TSE++ A G+S +L+ P++V +L+ + +
Sbjct: 103 ANLFSPLFVFISVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISGLSFYLSGY 162
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K++ ++ + I K D
Sbjct: 163 VIPHGTVIKQNFESMYKNSKKNTSAENVQLQVDRGVIAYIQHYDDKAKRGYGFSLDKFEN 222
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQK 239
+ D ++ + + + I ++
Sbjct: 223 KKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDRKDTLIMMEPADLVF 282
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + E +++ I +T I S+S
Sbjct: 283 SKGQQETFTNPELSAYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSLSSR-K 341
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + P+ AA IP +L ++
Sbjct: 342 RKGGMGLYLGIGLALSFGYILLQTVSATFAVNADTPPMLAAWIPNLLFAVVAYF 395
>gi|113868947|ref|YP_727436.1| permease [Ralstonia eutropha H16]
gi|113527723|emb|CAJ94068.1| predicted permease [Ralstonia eutropha H16]
Length = 388
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/389 (15%), Positives = 118/389 (30%), Gaps = 34/389 (8%)
Query: 2 PGIL---WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
IL RYF + + L + L D+ + Y+ +
Sbjct: 1 MKILRVYERYFGRLVYGVFAFILFAVLSLFVFFDMLNELENV--NNQYTSLVALFHVLLQ 58
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
P + +++P L+ I VF L SE I R G++ Q L ++ L I T +
Sbjct: 59 APTRVYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLAIVTFI 118
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL------PE 172
IA E+ + + W++ + G
Sbjct: 119 FGEFIAPRAEQYAQKIKLEAIGATVSSGFRSGVWVKDRDKDAATGGGEITRFVNVAGLRP 178
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE------------------- 213
+ T D + ++ + A ++ + V
Sbjct: 179 DQTITGITMYEFDPQYRLRMIRVAQEGRYQGGQLWELQGVNETRFIELASPAQGAKPARD 238
Query: 214 ---YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + T++ + S ++ + + N R
Sbjct: 239 SLAPDFRAEQVKFPRVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRD-NKQDTQRY 297
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
E F+ ++ PL L M +A + +R+ + V GI G + T+ G
Sbjct: 298 EIAFWKKVIYPLTLFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGL 357
Query: 331 SGILLPVAAALIPVILTISLSILILLQKE 359
P+ +AL+P L + +++L L +
Sbjct: 358 LHTWPPIISALVPGTLYLMVALLALRWVD 386
>gi|302879721|ref|YP_003848285.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
gi|302582510|gb|ADL56521.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
Length = 358
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 8/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + ++L +D MG YS+ + +P
Sbjct: 1 MNLLTRYLAREIYASIALVFAALIMLFAFLDFIGQLGTMG-YGQYSLGYVVLFVLLTIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++ P L+ IV + SEL I RA G S Q+L ++ + + + +
Sbjct: 60 HIYELFPVAVLIGTIVALVQMAARSELTIYRASGASTGQMLGALSKIAVPMILLSFICGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA E++ L + + ++ + F+ + ++P+ + +
Sbjct: 120 LIAPPSERLAQKLRLKALNTQVSLQAFRS---GVWVKDDASFVNVRSVMPDTSLSDIDIY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ + + + +L V+E + + S +
Sbjct: 177 TFDKSFHMNSVIRAKRASYLEPGVWQLHDVLETSFAARGVSTKSMPVREWQSALTPGILS 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S ++ K S ++ R E + +V P L+ M ++A +
Sbjct: 237 VMLVVPEQMSALDLYKYASHLKENKQQSA-RYEIAMWNKLVYPFALLVMMVLALPFASYQ 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ I+V GI G + + ++ S G P+ +A + + + +L +
Sbjct: 296 RRAGGVSILVFMGIVLGLVFHFAGRLVGSLGSLNDWQPLFSATAMTGVFLLIGAFMLWRV 355
Query: 359 E 359
E
Sbjct: 356 E 356
>gi|300312407|ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1]
gi|300075192|gb|ADJ64591.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 376
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/376 (15%), Positives = 115/376 (30%), Gaps = 20/376 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RYF ++ L+ L + L ++ Q+G Y + + +P
Sbjct: 1 MRVIQRYFTSEITRSVLFALAAFLALFAFFEMMGQLEQVG-RNGYKLQQAVFYVLMGLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ I L SE I R +S Q + + T++
Sbjct: 60 NVYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGQAARVLARIGVGFAVLTIVFGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI--------FIGAKKILPEN 173
IA + L Q + + W + + FI + + P+
Sbjct: 120 LIAPKATEWAEKLKLQAQGASLSSQFRSGMWAKDVIRDHGLEGNVVGSRFINIRTVQPDG 179
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----------GRIPIDK 223
I + N + L VV+ + +
Sbjct: 180 RIEGVKLYELDSDFHMARMVTAKAGMYDGNHQWTLSDVVQSDFTGGSDRKITEPVKTVKS 239
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
TL + + S Y+++ +N R E F+ IV PL
Sbjct: 240 AQLTLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLE-ANNQRTDRYEIAFWKKIVYPLS 298
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M +A + R+ + + GI G I ++ G A +P
Sbjct: 299 IFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFVTAALP 358
Query: 344 VILTISLSILILLQKE 359
+L ++L+ L E
Sbjct: 359 SLLFMALAAGALWWVE 374
>gi|196228189|ref|ZP_03127056.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
gi|196227592|gb|EDY22095.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
Length = 380
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 124/369 (33%), Gaps = 14/369 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + +++ L L G + + +ID+++ N E + T++P
Sbjct: 1 MNILDRYVLRSFIEPFLMCLAGFIAIWLIIDVSDNFNDFIE-AHARFRTILEYYVTQLPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P ++ + ++RT+EL+ G S+ ++L P + +L+ F +
Sbjct: 60 VILMSLPVGLMLGLLFSLSRMSRTNELISQLTAGRSVVRVLAPLIGVGVLMTGFCFWLNW 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A E I D +Q+ K + + + + D +K++ +
Sbjct: 120 EHAPHAESIKKDAMQKIKRGKRATDVEPVLAHLFRDRRDDRTWYVRKLIFQPGEERMQGV 179
Query: 182 ITIDKKNKIIHRKDAD----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------N 229
+ K + KL+K + ++ +
Sbjct: 180 HVTQQDETGHILKKWYASSVYYDPAKQEWKLEKGKIVTFKPDGDVEDQDLFLRGFRIIKD 239
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P S +E+ + + +++ +P +
Sbjct: 240 WPETPWRVASTELNPGGLSVHELHEYLKYNSDFPAVQLAPYRANLADRYALPFQCLLAVF 299
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+AA + + ++R V + ++ + GK + P + +PVI
Sbjct: 300 LAAPLGIVYNRRGVIG-GVTAAMVLLVLMIMSHSFFVMLGKGMRMDPNFSPWVPVIGLGI 358
Query: 350 LSILILLQK 358
+ ++++ +
Sbjct: 359 IGLVLMYYR 367
>gi|194290553|ref|YP_002006460.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
gi|193224388|emb|CAQ70399.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
19424]
Length = 392
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/385 (14%), Positives = 116/385 (30%), Gaps = 35/385 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + L + L D+ + Y+ + P + ++
Sbjct: 9 RYFGRLVYGVFAFILFAVLSLFVFFDMLNELENV--NAQYTSLVALFHVLLQAPTRVYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALVTFIFGEFIGPR 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ------DIFIGAKKILPENHIWEDFT 180
E+ + + W++ + F+ + P+ I
Sbjct: 127 AEQYAQKVKLEAIGATVSSGFRSGVWVKDRDKDPAGDGEITRFVNVAGLRPDQTITGITM 186
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------------------------- 214
+ + R + +L+ V E
Sbjct: 187 YEFDPQYRLRVIRVAQEGRYQGGQSWELQNVSETRFVELAPHAQGAQPAAATPPRDALAP 246
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ + ++ + S ++ + + N R E F
Sbjct: 247 DFRAEQVKFPRVAMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRD-NKQDTQRYEIAF 305
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ ++ PL L M +A + +R+ + V GI G + T+ G
Sbjct: 306 WKKVIYPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTW 365
Query: 335 LPVAAALIPVILTISLSILILLQKE 359
P+ +AL+P L + +++L L +
Sbjct: 366 PPIISALVPGTLYLMVALLALRWVD 390
>gi|126031979|gb|ABN71555.1| putative permease [uncultured bacterium]
Length = 365
Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 119/357 (33%), Gaps = 1/357 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY K ++ + LL ++++ ++DL ++ P S ++ + R+P ++
Sbjct: 10 TLTRYIAKLFVVRVVGVLLMLVLVLQMLDLLSESGKILSQPGNSEAQLWTYVSLRLPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P+ L+ I+ LN+ SE+V +A G+S Q+L P ++ ++ + ++ +
Sbjct: 70 ARFLPYSALLATIITLATLNQNSEVVAMKAAGLSAHQVLAPLLLTALGVSATSLAFNELV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
T + + +
Sbjct: 130 VTRSSAALKAWQAVDYGVVPRGSAGRTNVYTRDGNDILTAASVSGEGSAMRLVGVTFYRR 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ V + + +
Sbjct: 190 DVNGAIREKIVSPRANFAQPGWRLEQPVAFDVASVQQKPIAPLVVARAVTPVQVSISTID 249
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ ++ + ++ + E +++ + PL M L+ A + +RS Q
Sbjct: 250 ADGQNIVQLGRSIAALKANGRR-TSELEGKWWHKLSGPLSAALMPLLGAIAAFGLARSGQ 308
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I G+ GF + + + G G P+ AA P +L + + +L++ E+
Sbjct: 309 LLIRAVLGMALGFTYFVVDNAALAMGNFGGYPPLIAAWAPFLLFLLIGETVLVKTEE 365
>gi|301059203|ref|ZP_07200141.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446693|gb|EFK10520.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 358
Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 133/360 (36%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K + K + L + L +ID + + S A ++P
Sbjct: 1 MNVLTRYLLKEFFKLLIVCQLVFIALYLMIDFASGIDDFIK-AGAPKSVMIAYFAFKIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q++P L I++F + R +E+V +A G++ WQ+ P V+ + L +
Sbjct: 60 IAGQMLPPAVLTTVIILFSLMKRNNEVVALKASGVNTWQVAQPLVLLAAFLSVVLFFFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I ++ + + + ++ K+ + D T
Sbjct: 120 TIVPYASSRCNEIWRIEVKK--EHPGRFHGQNHVWYKGKNCIYFIKQFDSRKMMMVDPTF 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGF 237
D K KI R D AI + +++ E G + + + F
Sbjct: 178 YFFDDKFKIARRIDGRRAIWKENGWQVQNGIVQNREKDGGYDLQKFDHLEVKLDENPKDF 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + ++ + + R + I P +++ MTL+ ++L
Sbjct: 238 IRENVEPEEMGYRQLKRFAQRLKLEG-YDANRYFVELNIKIAFPFIVLIMTLMGIPIAL- 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + V+ GI F+ I+ + ++ G +GIL P+ +A + + + +++
Sbjct: 296 WKKGMGTPVAVSIGIALCFVYLLILGLARTLGFAGILPPLFSAWLANSIFLFFGAYMMIH 355
>gi|73542370|ref|YP_296890.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
gi|72119783|gb|AAZ62046.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
Length = 383
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/360 (14%), Positives = 108/360 (30%), Gaps = 26/360 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + ++ L + L DL + Y+ V + P I ++
Sbjct: 9 RYFARQVYGVFVFILFAVLSLFVFFDLLSELENV--NGKYTSLIAFVHVLLQAPTRIYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALITFIFGEFIGPR 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-----------------------DIF 163
E+ + + W++ + ++
Sbjct: 127 AEQFAQKIKLEAIGATVSSGFRSGVWVKDRDKDPAGGEITRFVNVAGLRPDQTITGITVY 186
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ + + + + + + + ++ +
Sbjct: 187 EFDAQYRLRVIRVVKEGRYQGAQSWLLSDVNETRFSELRQPGTASRDGLAPEFRAEQVRF 246
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
S T++ + S ++ + + N R E F+ +V PL
Sbjct: 247 PSVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRD-NKQDTQRYEIAFWKKVVYPLT 305
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
L M +A + +R+ + V GI G + T+ G P+ +AL+P
Sbjct: 306 LFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTWPPIVSALVP 365
>gi|329118129|ref|ZP_08246841.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
gi|327465789|gb|EGF12062.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
Length = 356
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + +LY + + L D+ +GE Y+ + A ++P
Sbjct: 1 MKTIPRYLIRQLSVMSLYAMFALLALYSFFDIVAEAGGIGEGG-YTAGKMAQYVFLQIPD 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P L+ +++ L SEL + + G+S LL F++ ++ T L+
Sbjct: 60 HAYQLMPLAVLIGSLLALSRLAANSELTVIKTSGMSTANLLTVFLIFGLIFATATALLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + + +L NG W++ +Q+ + +++LP+ +
Sbjct: 120 LAAPAANRYAENLKTTA-KNGKISTGAEGLWIK----EQNSIVNVREMLPDQTLRGIKAF 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQ 238
D I + + + +L+ V I+
Sbjct: 175 RHNDAFQLIESWQADAATVAPDGTWRLENVRRSILGGERVRTERHERENWQAGIRSGLLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + ++ + N +++ ++ P V M +A + + +
Sbjct: 235 VLLVSPDQMSLAALTAYIAHLEE-NRQKTDLYRIEWWRKLMYPAATVVMAFVAFAFTPQS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P AA++P +L + ++ ++ +
Sbjct: 294 ARHGNMGLKLFGGICLGLAFHFAGRLFGFTSRLYGIPPFLAAVLPTLLFAAWAVWLIRRH 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|150024706|ref|YP_001295532.1| hypothetical protein FP0611 [Flavobacterium psychrophilum JIP02/86]
gi|149771247|emb|CAL42716.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 361
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 119/358 (33%), Gaps = 5/358 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL +Y K YL T L LL + + +D+ E N++ E I + +
Sbjct: 1 MLTILDKYILKRYLATFLVMLLLFIPIGITVDIAEKINKILENK-VPIDKVLSYYVDFII 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + I L +E++ + GIS + L P+++G+ ++ F +L+
Sbjct: 60 YFTNFLFPIFLFLSIIWFTAKLANNTEIIAILSSGISFSRFLRPYIIGATIVSFFALLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + + + K + + + + + + +
Sbjct: 120 FFLAPKASEGFKNFRYLYLIGNGKDEMRETNDVYRQISETEFIYVSNFDIEAKTAYNFVF 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGF 237
+K + L + +NS + ++
Sbjct: 180 EKFNAEKLVYKISASSIQWNSKEKTYTLLNYSKRTVGALNDKIETENSKPMKFNFDLEDL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ SF ++ K + K + Y IP+ +T+IA +VS
Sbjct: 240 TPVVYIAETLSFTDLNKFIEKEKKRGSANINTYLVVKYRKYSIPISAFILTIIAVAVS-S 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A GI F + I + + + P+ A IP + L+ +L
Sbjct: 299 MKRRGGMGMNLAIGIAIAFSYIFLDKIFATLAEKSSIEPIIAIWIPNFIFGILAFYLL 356
>gi|307154796|ref|YP_003890180.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
gi|306985024|gb|ADN16905.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
Length = 388
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 62/374 (16%), Positives = 123/374 (32%), Gaps = 18/374 (4%)
Query: 2 PGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
P I + Y F L+ + L I + SIS + ++
Sbjct: 14 PKIPSVDSYVFMELFIPFLFGMGLFTSLGIAIGTLFDIVRKVTESGLSISIALQILMLKM 73
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P L+ ++ + L SEL+ R+IGIS ++LL P ++ S+++ T
Sbjct: 74 PEFVVLAFPMSILLATLMGYSRLASDSELIAFRSIGISPYRLLVPSLILSLMVTGTTFFF 133
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +A + ++ + + + IL E F
Sbjct: 134 SDYVAPQATQQAKSILADALKQDKPLQVEDNIIYPEYKKITQDNGRDQTILTRLFYAEKF 193
Query: 180 TSITIDKKNKIIHRK---------DADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNS 225
+ + + + + + + Y R +
Sbjct: 194 DGQQMQGLTILDRSQPGVNQIVTSQSAIWNVDQNSWDFYNGTIYLIAPDGSYRNIVRFEH 253
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS-NIFHNYRAETQFYFLIVIPLML 284
L++P K + A S E + + S N + E + +P +
Sbjct: 254 QQLDLPRAPLDIAKRKQNPADMSIAEAKEYLKIVKLSKNDQRARKVEVRIQEKYALPFVC 313
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +++ L+ + I F Y + I S G GI+ P +A +P
Sbjct: 314 IVFGLIGSAIGLKPQ-NTNKATSFGVCIVLIFSYYLLSFITSSMGIWGIVTPTVSAWLPN 372
Query: 345 ILTISLSILILLQK 358
IL + ++ +L+Q
Sbjct: 373 ILGLLAAMSLLVQT 386
>gi|251771422|gb|EES52001.1| permease YjgP/YjgQ family protein [Leptospirillum
ferrodiazotrophum]
Length = 361
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/358 (15%), Positives = 122/358 (34%), Gaps = 7/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL R+ Y+K L+ + VID E + S A R
Sbjct: 1 MKILTRHIMGEYIKIYFLSLVSLEAIYLVIDSVEKIKSFL-AHHAPWSLMGEFFAWRSIE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++IP L+ I+ ++ E+ RA GIS+ + P V+ LL + +L+
Sbjct: 60 VGFRVIPMSALLATILALGIASKNHEITAIRAAGISLGKATFPIVLFGALLSLIELLLNL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++++ + G ++ + + ++IF KI + T
Sbjct: 120 WVVPHAYQTTDVIMEERINQGSGWSGEVRRNVWFRHGSREIF-RIAKIEQGGTRLDTVTI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
K + +A + N V + + + + + F
Sbjct: 179 YHKSPKADLQWTIEAKTLLYENGGWVFHDGVRTLFHKDGTLSSESFATLPFPLDRRPADF 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ ++ E+ + + + + H + L P M L A +
Sbjct: 239 FIRKTHLSHLTYAELSRTIDLLKANGLPHKNFTVLRDGVL-AFPAASFLMVLFAIPFGIR 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +T+ ++ + G+ G++ P+ AA ++ +++ + +L
Sbjct: 298 EGRQVGIARGFGVALMLSLSYWTLYSMGLALGRGGVIPPLLAAWFANLVVLAVGLGLL 355
>gi|288803319|ref|ZP_06408752.1| membrane protein [Prevotella melaninogenica D18]
gi|288334139|gb|EFC72581.1| membrane protein [Prevotella melaninogenica D18]
Length = 377
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 119/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y K ++ T +Y +L + + V D NE ++ + + A VP
Sbjct: 18 GILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPYY 77
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 78 SNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGVSIRRLMRPYMISCVLIAGLTFYLNSF 137
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + N I + T
Sbjct: 138 VIPHGTVIRQNFESLYRNSKKNTSAENVQLFVAKNTTAYIQHYDDQYKRGYGFSLVKTKN 197
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
+ D K+ + S + ++
Sbjct: 198 KKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEPTDLVY 257
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I S+S
Sbjct: 258 SKGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSLSSR-K 316
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP I+ ++
Sbjct: 317 RKGGMGLYLGIGLALSFGYIMLQTVSATFAIQDDTPPILAAWIPNIIFAIIAYF 370
>gi|77361338|ref|YP_340913.1| hypothetical protein PSHAa2422 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876249|emb|CAI87471.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 370
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 129/356 (36%), Gaps = 8/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVSILGDASE-GSIPAKLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I + +
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMHV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + Q N + +FI + + +
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQLP 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+K+ + A+ ++ + + + L + + F +S Q
Sbjct: 181 DSEKDNLARLVYAEQGVVIE----AQNGEQQLVLSDGKRYETDGLTPALNLTEFDGYSVQ 236
Query: 244 FASRSFYEIIKKMSFSNKSN--IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +K+ + + A Q+ + I IPL + +TL+A +S+ R
Sbjct: 237 IREQEIEHQRRKLEAIPTNQLLALNTPEATAQWQWRIAIPLSIPLLTLLAVPLSVVNPRQ 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +V I + ++ K + G + P + + + L++++
Sbjct: 297 GKFAKLVP-AISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLLIIK 351
>gi|124514757|gb|EAY56269.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
Length = 362
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 118/359 (32%), Gaps = 6/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K L + + VID E + ++ R
Sbjct: 1 MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLS-HHAALPLIGQYFFYRSIE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ ++ L++ EL RA GIS+ + PF+ +L+ + ++ +
Sbjct: 60 VSFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNY 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + D G GA+ I + +
Sbjct: 120 QLVPYAYQMTDYIKDVRIDQGKSGNVTFELNNVWFRHGNQDIYGARTIRDGGNELDKVVL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
+D+ + + DA + + ++ + + F
Sbjct: 180 YHLDRTFHLSWQVDAKTLRYHQGLWSFQDGHLTRFLPDGSLKIESFQKMDTTLTRRPVDF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S+ E+ + ++ KS + E +I P+ M L+A +
Sbjct: 240 TYEKTRMTHLSYPELDRYIALLEKS-HLPREKYEVTRDAMIAFPIAAFLMVLMAIPFGIR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +TI ++ + GK G+LLP +A ++ +SI + L
Sbjct: 299 EGRQVGIAKGFGISLLLSMSYWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLFL 357
>gi|87121691|ref|ZP_01077578.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
gi|86162942|gb|EAQ64220.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
Length = 353
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 9/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K + + + L +V+ E ++ E Y+IS + R+P
Sbjct: 1 MKQLDSYIGKGVVWAFFAVVFILLGLDYVLTFIEQVKRISEF--YTISNLLEVLLLRLPS 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP +L+ +V L TSEL + RA GI IW++ + +++ + V +
Sbjct: 59 KFAEYIPIASLIGTLVGLGALASTSELTVIRAAGIPIWRIGWSAIKPILIISLIGVGISE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + ++ + K W++ I + +
Sbjct: 119 FIAPNADQRANLIENLKKQQTSDNIISGGVWIRSEEKYIFI-----GAADQKGTLYNVKV 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + D+ L +V Q+ I+ N+T +
Sbjct: 174 FNSKNQTLQSTQIAKTAQYKTADEWTLNQVTNTQFLADKIESNNTNFESLTMTFKPEHLY 233
Query: 242 EQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + +S+ N + R E +F+ + P+ +A+ LIA S
Sbjct: 234 LATQEPEALSLSQSISYQNYLEGQDLNTSRYELEFWTKALRPVASIALVLIALSSVFGPL 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G+ G + + + + P+ LIP+ + +++ L L +
Sbjct: 294 RSSTMGSRIFSGVMIGIIFQNGLNLFGRMSLAADFSPLLGVLIPIAICLAIGTLQLKR 351
>gi|90416561|ref|ZP_01224492.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
gi|90331760|gb|EAS46988.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
Length = 356
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 115/357 (32%), Gaps = 3/357 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + K LL + L V + + + NY + + T VP
Sbjct: 1 MMHRLSWHVGKTVFAAIAVTLLVLVGLDSVGAIIDQSADVTR--NYFFADAMIYVVTLVP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + IPF +L+ +V L SE+++ RA G+S +++ + ++ I + +
Sbjct: 59 SRIYEYIPFASLIGCLVGLGLLAGNSEVIVMRAAGVSPLRIVGFVLKPVLIFIILGMTIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ + + Q S W + N + F
Sbjct: 119 EYFSPYLDQLAEGKREYLRKGESAQDSSSGLWNREGNQFVHANAVFPGGVLYGVTRYQFN 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ R + Y + + + + + +
Sbjct: 179 DERQIQEASFASRATFNSTERYWIEENVSVTRFLGDSTERDKLITRRWDSELTPNVLMLN 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S S + ++F NI E + + PL+++ + L+ S R
Sbjct: 239 ILPADSLSIESLYSYIAFLELQNI-DTASYEVALWRKALQPLIIIGLVLLGISFVFGPLR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + G+ G ++ P+ A L+P++ + + + +L +
Sbjct: 298 DSTMGFRIFIGVVFGISFRIFQDMLGPLSVVFQFPPLLAVLVPILFCVLVGVFLLRR 354
>gi|303258295|ref|ZP_07344302.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
gi|302859048|gb|EFL82132.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
Length = 378
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/378 (14%), Positives = 130/378 (34%), Gaps = 23/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 1 MKIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPT 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N
Sbjct: 59 RCYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ + + ++ D W++ + + +
Sbjct: 119 LVAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRPGEA 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-------------------EYQYGRIPI 221
+ + + ++ + Q
Sbjct: 179 AYDWVVYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERK 238
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
S + + F + S E+ + + ++ R +T F+ P
Sbjct: 239 VMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKENGQ-TYKRFDTAFWSKAFYP 297
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L ++ M L++ + + +R+ I + GI G Y + + + + +A+
Sbjct: 298 LAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSIISAI 357
Query: 342 IPVILTISLSILILLQKE 359
+P ++ +I+ + E
Sbjct: 358 LPSVMMTLAAIIAMWYVE 375
>gi|119944177|ref|YP_941857.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
gi|119862781|gb|ABM02258.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
Length = 354
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 116/344 (33%), Gaps = 4/344 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY K T L + L +I E +G + +Y A ++P+
Sbjct: 1 MGILDRYIGKTIFAATFLSLFVLIGLSSIIKFVEQMGSIG-VGSYDAWNAAYFVILKIPI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ ++ +L +SELV+ +A GIS ++ + +I + I +++
Sbjct: 60 ELSVFFPMAALIGALIGLGSLANSSELVVMQAAGISKLRIAGAVLKTAIPMVIVVMVLTE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +K + K + + W++ ++ I K + F
Sbjct: 120 FVVPITDKEAYSMRYMAKRGEVQVSNQYGVWVKDADSFVSIERMNSKNELFHVQLYFFDE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + V + ++ + +
Sbjct: 180 NLKLDHAILARKAAFKEGSWFFGDVSQTN--FLEDRTEVKRMSNYIWETKLTPKKLEVIL 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S +I + + +N R F+ V+P +V M L++ S RS
Sbjct: 238 GEPDKMSMRDIYNYIIYLE-NNEQDAKRFWLIFWRKAVLPFTIVVMMLLSVSFIFGGLRS 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ +GI +GF Y + F P+ AL+P
Sbjct: 297 VTMGTRLIFGIAAGFTFYVSGELFGPFSLVFNWPPILGALLPSF 340
>gi|303237034|ref|ZP_07323604.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
gi|302482421|gb|EFL45446.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
Length = 408
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/354 (15%), Positives = 117/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L Y K ++ T ++ ++ + + V D NE ++ + + A +P
Sbjct: 49 GLLDWYIIKKFIGTYIFSIVLIISIAIVFDFNENLSKFTQYHAPWRAIIFDNYANFIPYY 108
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A GIS +L+ P+++ IL+ T + +
Sbjct: 109 SNLFSPLFVFIAVIFFTSKLAGDSEIISMLAAGISFNRLMRPYMISCILIAGVTYYLNSS 168
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ + I N I D
Sbjct: 169 VIPHGTVIRQNFNALYRNDKKNTTGENIQLKVAKNTVAYIQHYDNTYKRGYGFSLDRFEG 228
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D K+ + + + I ++
Sbjct: 229 KKLVDHLTATEIQYDTIADSKFHWKVTNWKIRKLKGLKEHITTGAEMDTVILMEPTDLIY 288
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
F Q + +++ +S + + E +F+ I + +T+I S+S
Sbjct: 289 FDGQQEEFTSSQLLDYISKQTSRGSKNVIQYEVEFHKRIAMSFSSFILTIIGLSLSSR-K 347
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ + I +F + P+ AA IP I+ +++
Sbjct: 348 RKGGMGMYLGIGLALSVSYILLQAISSTFAINTNASPMLAAWIPNIIFAAIAYF 401
>gi|114768925|ref|ZP_01446551.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
gi|114549842|gb|EAU52723.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
Length = 366
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 66/367 (17%), Positives = 144/367 (39%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF K YL + + L ++LV + D N++ I +L+ R +
Sbjct: 2 TLAIYFGKRYLISFIRVFLSIVLLVLLFDFLTNLNRL-NGIEAQIWNALILSLLRTTTYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P I ++ + +L+R++E ++ RA G+S + L P + + LG+ ++ +++P+
Sbjct: 61 SLAMPLIIMLSALAFSVSLSRSNEFIVLRASGVSALKGLFPVISSAFFLGLISIFMLDPL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + + + Q +D WM+ + I A + T
Sbjct: 121 AGKMIGYYNIKLDKLRSKEQSQVLINDNGYWMRQATLNGHQIIKAVNVSNNGQRLHQVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKM 234
D+ + R ++ A + N+++ L +++ + I
Sbjct: 181 FNYDENGLVTERFFSESAALGNNELLLTNAIKWSDTKIKKNPIIANEKIKKLKIKTEITP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S + + K++ S F + +++ P + + M ++
Sbjct: 241 TQLLDGYASPETISPWNMNKQIQKVKSSG-FSVLKYQSKKMEQYARPFLFIVMVVLGTVF 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L+ SR+ I V + SGF L+ + G+SG + + A P++ +++ +
Sbjct: 300 TLQNSRARNVGISVVLAVASGFFLHFFQNFCTTLGRSGEIPLIIATWSPILSIGLIAMTL 359
Query: 355 LLQKEDG 361
L EDG
Sbjct: 360 FLHYEDG 366
>gi|94311741|ref|YP_584951.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
gi|93355593|gb|ABF09682.1| predicted permease [Cupriavidus metallidurans CH34]
Length = 387
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 57/380 (15%), Positives = 117/380 (30%), Gaps = 30/380 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + L + L D+ + Y+ P I ++
Sbjct: 9 RYFARLIYGVFAFILFAVLALFVFFDMLSELESV--QGKYTSLIAFFHVMLEAPTRIYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I +
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALATFIFGEFIGPA 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-------IFIGAKKILPENHIWEDF 179
E+ + + W++ + + + + L +
Sbjct: 127 AEQYAQKIKLEAIGATVSSGFRSGVWVKDRDREPEEKGAGEITRFVNVQGLRPDQSITGV 186
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVK--------------------LKKVVEYQYGRI 219
T DK ++ + A + + + +
Sbjct: 187 TIYEFDKDYRLRVIRVAKEGKYQGGQSWQLNDVNETRFIELRDGQPAANRDALAPDFRGE 246
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + ++ + Q + S + + + N R E F+ +V
Sbjct: 247 QVQFPNILMHSELTPQILSVLLVQPENMSTVNLFRYIRHLRD-NKQDTQRYEIAFWKKVV 305
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL L M +A + +R+ + V GI G + T+ G P+ +
Sbjct: 306 YPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTWPPIVS 365
Query: 340 ALIPVILTISLSILILLQKE 359
AL+P L + +++ L +
Sbjct: 366 ALVPGTLYLMIALGALRWVD 385
>gi|237747611|ref|ZP_04578091.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229378973|gb|EEO29064.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 381
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 63/381 (16%), Positives = 107/381 (28%), Gaps = 25/381 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RYF L++ L+ L + L DL + +G Y + + P
Sbjct: 1 MKILQRYFLSQILRSVLFVLFAFLGLFAFFDLIGELSSVG-RGGYQLQHVLIYILLGFPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +++PF L+ I SE I R +S ++ +FT LV
Sbjct: 60 YIYELMPFAVLIGTIYALAMFASNSEYTIMRVSSLSTLDACWMLAKVGLVFLVFTFLVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-------FIGAKKILPENH 174
I ++ + W + + + I K + +
Sbjct: 120 VITPVSARVATEFRNNLIGRAVGDGFRTGMWSKDTIRKDGIDGPVIGSRFMNVKKMQPDG 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----------------YGR 218
E + ++ A A + V
Sbjct: 180 TLEQIRLYEFNDNLELTKTVSAKNARYLGNHEWQLNEVVESHLTAANTKNKKFPDSAPSL 239
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+S + I D S S YE+ N + F+ I
Sbjct: 240 NTKKLDSLIMVSDITPDILSVISVDANKMSAYELAIYNQHL-VENKQDATSYQMAFWKKI 298
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +A + RS + + GI G I + G P
Sbjct: 299 IYPFSVFVMMALALPFAYLHFRSGGVSLKIFSGIMIGVAFILINNLFSHVGLLNTWPPFL 358
Query: 339 AALIPVILTISLSILILLQKE 359
A+IP L +++ L E
Sbjct: 359 TAVIPSALFFLSAVIALWWVE 379
>gi|306842049|ref|ZP_07474722.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
gi|306287890|gb|EFM59310.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
Length = 286
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 84/287 (29%), Positives = 150/287 (52%), Gaps = 2/287 (0%)
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A G ++
Sbjct: 1 MATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLAAHGFSKAEEIA 60
Query: 136 QQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
WK S PW++ + + IGAK IL + D T I D++ I R
Sbjct: 61 AMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQFDEQKNIKDRY 120
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
DA A + + +L V+ + G+ P + ++ ++ + ++ + F ++
Sbjct: 121 DARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLASPETIPFTQLRH 180
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
K+ + + + Q+ L+ +P +L+AMTLIAA+VSL+F R Q ++ G+ +
Sbjct: 181 KIEVARSFG-YSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFGQSGAMILGGVIA 239
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 240 GFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 286
>gi|118581151|ref|YP_902401.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118503861|gb|ABL00344.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 354
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 119/357 (33%), Gaps = 4/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + + L L L+ +L + + +G+ Y +S + + +P
Sbjct: 1 MKIIDRYLGRSFASCWLSVNLILAGLLSFFELAKQLDDIGK-GRYDVSDALLYVSLTLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ P L+ +I+ L + EL RA GIS+ ++ F+ ++L + +L
Sbjct: 60 RMLEMAPPSALLGSIIALGLLAKNQELTALRAGGISVQRIGWTFMKPAVLTLLVLLLGAQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + E+ + W + I + + +
Sbjct: 120 FIIPTLEQTAWTRRETALSKSGTLLPRGGFWTRDERR--FINLRTARDNGVQAVDIYEFD 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I R+ A + + + + G L + +
Sbjct: 178 NRDALTGYIHGRETRIGANGNWELHHVLRKEITEQGDSVRALPRLVLPHLLTPQQTAALT 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S E+ +S K + R + + +P++ AM +++ + +RS
Sbjct: 238 LPPQTLSISELSGTISNLQKR-EQNAGRYLLALWQKLTLPVITAAMIMLSLPLVCRPARS 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ G G + + + I+ G + P L P + ++ ++ +
Sbjct: 297 ASLGWHIMIGAIFGVVFFYLNQILGYTGLILQVSPFWTTLFPALAVLAGGAILTRRI 353
>gi|206602448|gb|EDZ38929.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
'5-way CG']
Length = 362
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 117/359 (32%), Gaps = 6/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K L + + VID E + ++ R
Sbjct: 1 MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLS-HHAALPLIGQYFFYRSIE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ ++ L++ EL RA GIS+ + PF+ +L+ + ++ +
Sbjct: 60 VSFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNY 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + D G + GA+ I +
Sbjct: 120 QLVPYAYQMTDYIKDVRIDQGKTGRVTFELNNVWFRHGNQDIYGARTIRDGGSELDKVVL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
+D + + DA + + ++ + + F
Sbjct: 180 YHLDSTFHLSWQIDAKTLRYHQGLWSFRDGRLTRFLPDGSLKIESFQKMDTTLTRRPVDF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S+ E+ + ++ KS + E +I P+ M L+A +
Sbjct: 240 TYEKTRMTHLSYPELDRYIALLEKS-HLPREKYEVTRDAMIAFPIAAFLMVLMAIPFGIR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +TI ++ + GK G+LLP +A ++ +SI + L
Sbjct: 299 EGRQVGIAKGFGISLLLSMSYWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLFL 357
>gi|17547136|ref|NP_520538.1| hypothetical protein RSc2417 [Ralstonia solanacearum GMI1000]
gi|17429438|emb|CAD16124.1| putative permease transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 401
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 52/402 (12%), Positives = 111/402 (27%), Gaps = 46/402 (11%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M IL +YF + ++ L + L D+ + Y+
Sbjct: 1 MMKILKMQVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGR--YTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ + L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + W++ P + F+
Sbjct: 119 TYVFGEFIGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------- 214
+ P I R + +L V E
Sbjct: 179 TLQPNQTIQGLRIYEFDANYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGAAT 238
Query: 215 -----------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + + ++ + +
Sbjct: 239 PQDSKQAVPGAPDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYIR 298
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
N R E + +V P ++ M ++ + +R+ + V GI G
Sbjct: 299 HLRD-NKQDTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIMLGLS 357
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 FQLVNNLFSHVGLLNTWPAIFTAILPGALYLAVALVALRWAE 399
>gi|114776388|ref|ZP_01451433.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
gi|114553218|gb|EAU55616.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
Length = 352
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 123/362 (33%), Gaps = 15/362 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +++R+ F L +L + + + +I+ + +G ++P
Sbjct: 1 MP-VVFRWIFSGCLSRSLVTMSALLAIFVIIESFDKARYLG--HGLDGRLMVEYMLLKIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ + +P I L+ + L+R E+V RA G+ I ++L P ++L + + ++
Sbjct: 58 FMLSEFMPVIMLIGASLYLIELSRNQEVVALRAAGLGINKVLLPLSSVALLAALASFIIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + Q + + + ++ P +
Sbjct: 118 EWVTPVTNTRLDQIEQVHIQHKKSSQPGVQWLKD--------GHRFFRLTPLTNHQFALL 169
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--PIDKNSTTLNIPIKMDGFQ 238
+ + R D+ A L + + + +
Sbjct: 170 MLKTAPDGAWLQRIDSPRAHYSQGVWSLSDARVSTPSSDQVMHVEKLKNMEVKSAIGPET 229
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ F E+ ++ + + + PL + M ++AA++ L
Sbjct: 230 ADLPKPGHMDFSELYHYINNLKHAGLGAGT-YVYALHRKFSAPLACLLMVIMAAALCLHT 288
Query: 299 -SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R+++ + I G + Y I S + P AA +P ++ ++ +LL+
Sbjct: 289 GNRNSRASWGLMLSISLGLVFYVIGNAGYLLAASNRIPPAFAAWLPSLVFGGTAVFLLLK 348
Query: 358 KE 359
+E
Sbjct: 349 RE 350
>gi|294084201|ref|YP_003550959.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663774|gb|ADE38875.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
Length = 368
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 153/362 (42%), Gaps = 4/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVP 60
G L+RYF YY + L L G +++ VI E+ Q + +VLA +P
Sbjct: 7 FGTLFRYFAFYYTRWILLCLFGLTVIISVIQSVELMRQKSVNKSDVEEISVSVLAMLNLP 66
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II+ I+PF L+ ++ F N+++E V++R G SIW L+P +V ++ +G+ V+VI
Sbjct: 67 NIIEVILPFAVLIGTMLCFHAWNKSNEFVVTRGFGQSIWVSLSPVLVSALAIGVLFVMVI 126
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NPI K + D+ + S+ W++ I I + + +
Sbjct: 127 NPIGAVTSKRYNSQMATLNDDISNNLTISESGIWLRDMQDNVKIIINGDALDMKTAQISN 186
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ R A + ++ +++ + + + + ++
Sbjct: 187 PTIYSFVNGFELNWRVQAQSIQLTQMGWEVVDGIKWDSDGLQNELGTFIIPTNLEAVDLT 246
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S S Y + ++ ++ + E F ++ P +LV +++IA +++
Sbjct: 247 RSGQSPHSISIYALPHFITVLERAGLPTIN-HEIHFNKILAFPFLLVGISMIATRITVRS 305
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ +V G+ ++ +M G S + + A P I + + ++L +
Sbjct: 306 INRGRQMKLVIKGLGIATCIFIFSYLMHVMGTSLTVPALVAGWTPAITVLLIGSIMLARL 365
Query: 359 ED 360
++
Sbjct: 366 DE 367
>gi|285019431|ref|YP_003377142.1| permease [Xanthomonas albilineans GPE PC73]
gi|283474649|emb|CBA17148.1| putative yjgp/yjgq family permease protein [Xanthomonas
albilineans]
Length = 368
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 120/360 (33%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y + L T L + L ++ L+ +G+ +YS+ A VP
Sbjct: 9 DLYVGRAVLGTVLLTWAVLLGLDVIMALSNEFKDIGK-GSYSLGHAVAYVAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L +L + V +
Sbjct: 68 LFPTGAVIGVLMGLGQLAATSELTALRALGLSRRRLSLAAAATMTVLIVAMVFSGETLGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWEDFTS 181
+ + K N + + W + + + G + + D
Sbjct: 128 WAQNQADVIKANAKFNSNMSMARYSGLWAREGDTFLNAQAGEEHLQDGGGSWLELRDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
++D+ ++ A A + + LK+ + +S +
Sbjct: 188 YSLDQNGRLATLTHASSAEHHANGWTLKQGYRDTFAERSVQRETFDSQPWPSQLDAAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +++ + + ++ E Q++ P+ ++A+ A +
Sbjct: 248 SGLAKPRNLSAHDLHVSIEYRQRNG-LDARDYEDQYWSRWFYPINVLALCFAAIPFAFGA 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI + + + + A +P ++ +++S L+ ++
Sbjct: 307 LRSGGMGKRLFLGILFALVFWLLQLFFGRMAGALKFDYRIAYALPPLVMLTVSWLMFRKR 366
>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
Length = 388
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 111/361 (30%), Gaps = 18/361 (4%)
Query: 1 MPG--ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
MPG ++ RY + L+ + L I + + + +
Sbjct: 13 MPGLSVMDRYIVFELIPPLLFGIGAFSSLGVAIGTLFELVRKVTEAGLPLGIALQVLLLQ 72
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I +P L+ ++ + L+ SEL+ R+ G+SI++L+ P VV S+L+ T +
Sbjct: 73 IPQFISYALPMSMLLAALMAYSRLSSDSELIAMRSFGVSIYRLVIPAVVVSLLVTSLTFV 132
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------QQDIFIGAKKI 169
+ + + + + + + +
Sbjct: 133 FNELVVPAANYQSKITLDKALKKERPSFQERNIFYPEYQKVKLPNGKKVNKIKRWFYAEQ 192
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKN 224
+ + I ++ + + Y R +
Sbjct: 193 FDGKQMRGLTILDFSQTGLEQIVTSESAVWNPTENLWDFLDGTIYIISPDASYRNILRFQ 252
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLM 283
L +P K + + + + ++++ S R + I P +
Sbjct: 253 KQKLQLPRTPLDLAKKNRDYGEMNIAQSLERLEVLRHSGNAKKIRKLRIRIQQKISFPFV 312
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ L+ AS+ R+ + + F Y + I + G I P+ AA +P
Sbjct: 313 CLVFGLVGASLGTRPQRTGK-ATSFGISVLVIFSYYLLGFITNALGLVNIFSPLMAAWLP 371
Query: 344 V 344
Sbjct: 372 N 372
>gi|331001131|ref|ZP_08324762.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
gi|329569436|gb|EGG51214.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
Length = 378
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/378 (14%), Positives = 130/378 (34%), Gaps = 23/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 1 MKIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPT 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N
Sbjct: 59 RCYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ + + ++ D W++ + + +
Sbjct: 119 LVAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRPGEA 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-------------------EYQYGRIPI 221
+ + + ++ + Q
Sbjct: 179 AYDWVIYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERK 238
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
S + + F + S E+ + + ++ R +T F+ P
Sbjct: 239 VMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKENGQ-TYKRFDTAFWSKAFYP 297
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L ++ M L++ + + +R+ I + GI G Y + + + + +A+
Sbjct: 298 LAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSIISAI 357
Query: 342 IPVILTISLSILILLQKE 359
+P ++ +I+ + E
Sbjct: 358 LPSVMMTLAAIIAMWYVE 375
>gi|307543949|ref|YP_003896428.1| permease [Halomonas elongata DSM 2581]
gi|307215973|emb|CBV41243.1| K07091 [Halomonas elongata DSM 2581]
Length = 354
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 119/356 (33%), Gaps = 12/356 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + + L VI + +Y + R+P
Sbjct: 6 LDRYIARNVLGAILVVQVVLLGLDLVITYINDLGDV--EGDYGALQVFFYLVMRLPWRFY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L+ ++ + ++EL + RA G S+ ++L + IL+ + + ++
Sbjct: 64 QYAPVGVLIGALIGLGGMASSNELTVMRAAGRSLARILWGVMKPVILVIAVVLFIAEFVS 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S E+ + ++ W + + + +
Sbjct: 124 PSTEQYASAWRLEKMQGEGAVLTERGGWQREGDSFYRFGAIRVDNVVLDLT------RYR 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ A A+ + L+ V ++ + + + +
Sbjct: 178 FEGRELREAVSARRAVWRDGGWVLENVDITRFVDGRTEVTHQATRPWQTELTPAELNRLL 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +++ E+ + + F+ +++PL + ++ L+AAS RS
Sbjct: 238 RRVETQAPSELWAHARYLEAQGQ-DATQPLLYFWQKMLMPLTMASLMLVAASFVFGPLRS 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V YG+ +G + + ++ P A L P ++ +L +L +
Sbjct: 297 VAAGTRVFYGVITGLVFKYLQDLLGPASTVFGFSPAWAVLAPTLICAALGFYMLRR 352
>gi|300866498|ref|ZP_07111188.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300335455|emb|CBN56348.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 369
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 107/354 (30%), Gaps = 15/354 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y K + L+ + + + + S + ++P I
Sbjct: 2 DWYLTKELIGPFLFGVGLFSSVGVTVGAVFELVRRVTESGLPFSTAIQIFLLKMPYFIVL 61
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P L+ +++ + ++ SE+V R+ GI++++L+ P V+ S+ + T + I
Sbjct: 62 AFPMSMLLASLMAYSRMSSDSEIVALRSCGINVYRLVVPAVILSLAVTGMTFAMNELIVP 121
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENHIWE 177
+ + + + + + + +
Sbjct: 122 AANYQATVTLDRALKREKPLFQEKNIFYPEFRNVDKGNGEESVLTRLFYAEQFDGKQMKG 181
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLNIPI 232
+ I ++ + + Y R + L +P
Sbjct: 182 LTILDRSQPELNQIISSESAIWNPAQNSWDFFNGTVYIVAPDGSYRNIVRFEHQQLQLPR 241
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIA 291
+ + + + I ++ S R + + +P + + L+
Sbjct: 242 TPLDLAAKARDYGEMNIAQAIDYLNLIRSSGDEQKIRKLKVRIQEKYALPFVCIVFGLVG 301
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
A++ + R+ + + F Y I S G IL PV AA +P+I
Sbjct: 302 AALGTKPQRTGR-ATSFGISVIVIFTYYVFSFITSSMGLKAILTPVMAAWLPMI 354
>gi|86158886|ref|YP_465671.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775397|gb|ABC82234.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
Length = 360
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/360 (12%), Positives = 119/360 (33%), Gaps = 9/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNAAAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDVV 119
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + ++ + + + + +E T
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGVDGKRVYHLRGNLPDGGFERVTV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGF 237
+ + + R DA L+ V + + D F
Sbjct: 180 YELSEAFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERAERKRYAFDEPPDAF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +I+++ + + + Y + P + L+A +++L
Sbjct: 240 AVIAGKPDQMRWSTLIRQIGIRKRLGQP-VTEFQLERYDRLAYPFAGIPGALLALALALR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + + + + + + G SG + P A+ P ++ ++L + + +
Sbjct: 299 RDRKGHLSAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWVASWAPNVVFLALGAIAVHR 358
>gi|148242360|ref|YP_001227517.1| permease [Synechococcus sp. RCC307]
gi|147850670|emb|CAK28164.1| Predicted permease [Synechococcus sp. RCC307]
Length = 403
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 101/354 (28%), Gaps = 15/354 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ L L+ + + + + + + + R+P +
Sbjct: 34 DRWLTGELLGPLLFGIAAFTAVTLSVGVLFELVRKVAEAGLPMGVAVQVLFLRLPGFLVL 93
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P TL+ ++ + L+ SEL R+IG++ ++ + P +V + L+ + T + + +
Sbjct: 94 SFPMATLIATLLAYSRLSGGSELTALRSIGVATYRFVIPGLVLAGLMSVLTFVFNDVLVP 153
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS--------------NPQQDIFIGAKKILP 171
+ G ++ + + +
Sbjct: 154 PANRAGYVMLHKSLGRSIDSEKGGNIIYPRYGRVTDGPKDNKERLIQLFYAKEFKDGKMM 213
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + + + + + + V + D N+ +
Sbjct: 214 DVTLIDFSRAGQKQLLSAEEAVFMEGRGTWEFRRGSIINVADRGGRNTTADFNTYYYPLG 273
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
+ S E + + ++ R + P + + LI
Sbjct: 274 EGPLDLASLPKDVNVMSVAEANQALEIIEEAGDRKAARKMRVRLQEKFSFPAICLVFGLI 333
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
AS+ + + F+ Y + + S G G L P +A PV
Sbjct: 334 GASLGSRPNTRTSRSQGFGISVLLIFVYYLLAFVFSSLGVKGTLTPFLSAWTPV 387
>gi|197121804|ref|YP_002133755.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
gi|196171653|gb|ACG72626.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
Length = 360
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 122/360 (33%), Gaps = 9/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNASAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDAV 119
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + ++ + + + + +E T
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGF 237
+ + + R DA L+ V + + + D F
Sbjct: 180 YELAEGFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERADRRRYAFDEPPDAF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +I+++ + + + Y + PL + L+A +++L
Sbjct: 240 AVIAGKPDQMRWNTLIRQIGIRKRLGQP-VTEFQLERYDRLAYPLAGIPGALLALALALR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + + + + + + G SG + P A+ P ++ ++L + + +
Sbjct: 299 RDRKGHLAAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLALGAIAVHR 358
>gi|332535155|ref|ZP_08410964.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
gi|332035425|gb|EGI71924.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
Length = 370
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 127/359 (35%), Gaps = 14/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVGILGDASE-GSIPAKLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I + I
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMYI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + + N + +FI + + +
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIEKGGKELNKVFVAQLP 180
Query: 184 IDKKNKIIHRKDADL-----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+K + A+ A+ ++ L Y+ N T + Q
Sbjct: 181 DSEKGNLARLVYAEQGVVVEAVNGEQQLVLTDGKRYETDGTTPALNLTEFDGYSVQIREQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ Q + ++ + + Q+ + + IPL + +TL+A +S+
Sbjct: 241 EIEHQRRKLEAVPTNQLLAI-------NTPESIAQWQWRLAIPLSIPLLTLLAVPLSVVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +V I + ++ K + G + P + + + L++++
Sbjct: 294 PRQGKFAKLVP-AISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLLIIK 351
>gi|325104566|ref|YP_004274220.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
gi|324973414|gb|ADY52398.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
Length = 364
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 123/356 (34%), Gaps = 4/356 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ Y + YL T ++ + ++ V D++E + + A +P
Sbjct: 9 KLIDWYIIRKYLGTFVFTMAIFTLISVVFDISEKLDDFLKSRATFSQVVFEYYAGFIPFY 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V G S + L P+ V + ++ IF +
Sbjct: 69 LNFLNPLINFISVIFFTAKMADQTEIVPILTSGASFNRFLRPYFVAATVIFIFNIGFNLF 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ I+ + D ++++ + + + E F
Sbjct: 129 VIPETNRLMINFENTYTKIKDTSRNNVHLQLDSNTYIYMESFDNLRNSGYKFSLEKFDKK 188
Query: 183 TIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +K D+ + ++ V + TTL++ F
Sbjct: 189 DLKEKLMADRISWDSVSHKWKIENYTIRYVDGLKEKMENGTVKDTTLDMK--PIDFDIRD 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ +F+E+ +K+ E + Y P +TLI ++S R
Sbjct: 247 NIYSAMNFWELNEKIEKEKIRGSGVMVNLELEKYKRWTYPFSTYVLTLIGVALSSRKVRG 306
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I F+ I F G L P+ A LIP +L +L + + ++
Sbjct: 307 GVGLPLGLG-ILLSFVYILFIQFANVFALKGGLPPIIAVLIPNMLFGALGVYLAIK 361
>gi|320353217|ref|YP_004194556.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
gi|320121719|gb|ADW17265.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
Length = 508
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/364 (12%), Positives = 130/364 (35%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L+ Y L L + F++ L + + L ++ L + P
Sbjct: 32 PLLLYSYIANELLAPFFASFLILYCVFFLVRLIPLLEVVLALR-IGLADFIRLFSYIFPR 90
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IIP ++ IV F L E++ +A G+S+ Q+L P ++ + + T
Sbjct: 91 MLLYIIPMASMAGVIVGFTRLTNDREILALKACGVSLKQMLPPVILIAAAIATLTGFFSI 150
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW--------MQISNPQQDIFIGAKKILPEN 173
+ +G L+ + + + + + +
Sbjct: 151 RLIPAGALGFKQLMFELAKEKIDKGLKAREFTEALGDIVVYVDEIDDQQRWHGVYVSDMR 210
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ ++ + + ++ + + + + Q R + +L P +
Sbjct: 211 GRTQPLITVAKSGHMEAEMERMTVTIVLNDGTLHNNEGTDNQVVRFGRYQLQISLRPPTQ 270
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ S+ + S ++++ + ++ H ++++ + +P+ ++++
Sbjct: 271 IGKEDVTSQTRGAMSQQQLLRAAAKQKPNSKLHR-IFLSEYHHRLALPVGCFILSILGLP 329
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L+ + + + + G+ + Y T + + G L V +P IL L+++
Sbjct: 330 LGLQAA-PGRRAVGIPLGLVVFVLYYIAFTTARVMSEEGTLPLVLGMWLPNILFSVLTVV 388
Query: 354 ILLQ 357
I +
Sbjct: 389 IFWR 392
>gi|22299113|ref|NP_682360.1| hypothetical protein tll1570 [Thermosynechococcus elongatus BP-1]
gi|22295295|dbj|BAC09122.1| tll1570 [Thermosynechococcus elongatus BP-1]
Length = 378
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/367 (13%), Positives = 119/367 (32%), Gaps = 11/367 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P L +Y L + L L + + ++ L ++P
Sbjct: 13 LPK-LDQYLLSLLLPGFVLGLTVFTTLALTVGTIFDLVRQIADAQLPLTILLQLIGYQLP 71
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ + P L+ + L+ E + R++GI + ++L P VV ++L+ T+ +
Sbjct: 72 AVLVLVFPMAVLLAVVGAMSRLSEEGEWIALRSVGICLGRVLIPVVVFALLVSGLTLALN 131
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L+ + S + + ++ + + T
Sbjct: 132 ETAVPIAKYESKKLMGELLQQERSLGSGTDIFYPEYDRHGNVRRLYYGHRFDGSRIQGIT 191
Query: 181 SITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKM 234
+ + ++ + + L + + Y + + + +P
Sbjct: 192 VLDFSQPQVTQVISAESAEWNVRESRWLLSQGIAYLISHTGVSRNLLQFDQQEIRLPRPA 251
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAAS 293
S + + + + RA + P + V L+
Sbjct: 252 QSQPLRPTDVNELSITQARRALQRLDPDREPELVRALKVHLAQSYAQPFLAVVFALLGVG 311
Query: 294 VSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
L S R + ++ + F Y + + + G +G L P+AAA +P + + ++I
Sbjct: 312 FGLSPSQRRGRQGFGISVAVV--FGQYVLTFFLGALGTTGTLSPLAAAWLPHSIGLVVAI 369
Query: 353 LILLQKE 359
+L + +
Sbjct: 370 ALLWRAD 376
>gi|254428344|ref|ZP_05042051.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
gi|196194513|gb|EDX89472.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
Length = 353
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 121/357 (33%), Gaps = 11/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RYF++ + TL L + L + + NY + T P
Sbjct: 3 LLKRYFWRAVMIPTLAILFIIVGLDCLFGFVYELEFL--RGNYQVMEALQFILTTTPRRF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ L + EL + RA G+S ++ + ++L I ++ + +
Sbjct: 61 YEYMPMAILLGTLIGLGLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E++ + G+ +S W + I + N + T
Sbjct: 121 TPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPEFIHI-----NAVQPNGVLHGLTRYR 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K+ + D AI D L+ + + K+ +
Sbjct: 176 FSDNQKLTETQYVDRAIYQGDFWSLEGIHGTRLFDDHAETYQKDQGEWQTELTPQLLSIV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + + ++++ + + F+ + +PL + M LIA S R
Sbjct: 236 VLQPDNLALVKLLEYTRYLKRQG-LETADYMLSFWQKLFMPLATIGMVLIAISFVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + GI +G + + P+ AA++P L + L + +L +
Sbjct: 295 EVTMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAMLPPSLCLVLGVWLLQR 351
>gi|326796830|ref|YP_004314650.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
gi|326547594|gb|ADZ92814.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
Length = 353
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 134/357 (37%), Gaps = 11/357 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY L + + + L F + + ++ + +Y+ + + A R P+
Sbjct: 4 FDRYIGSSVLWSFAAVIFVLLGLDFALTFIDQVKKVND--SYTTNALLQVLAYRAPIKFA 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ IP +L+ ++ L TSEL + RA G+ IW++ +L+ + V + ++
Sbjct: 62 EYIPVASLIGTLIGLGALASTSELTVIRATGVPIWRIGFAACKPILLISLIGVGISEYVS 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + W++ I + D T
Sbjct: 122 PYATQQADLIERLRGQSEGRFALTGGVWIKSDGNFVYI-----NAADREGVLYDIQIFTP 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFS 241
+ + +K + +++ +L++V E + I+ K + +K S
Sbjct: 177 NGQALEKIQKAKFARHLSDNQWRLEQVTETHFLGDRIETGYKETVPWTASLKPSHLFLAS 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ + S E+ + S+ + + +F+ ++P A+ ++A S RS
Sbjct: 237 QEPEALSLSELHQYQSYLTGQ-ELNAGLYQLEFWTKSLMPFACFALVIVALSSVFGPLRS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+ G M + + + P+ IP+ L ++ +L++ +K
Sbjct: 296 STMGGRIFSGVLIGIMFQNGLNLFGKMSLALSFSPLIGVAIPIALCFAIGLLLMSRK 352
>gi|299065987|emb|CBJ37168.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CMR15]
Length = 401
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/402 (12%), Positives = 112/402 (27%), Gaps = 46/402 (11%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M +L +YF + ++ L + L D+ + Y+
Sbjct: 1 MMKLLKMQVYEKYFARQIYGVFVFILFAVLALFVFFDMLSELGSVVGR--YTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ + L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + W++ P + F+
Sbjct: 119 TYIFGEFIGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------- 214
+ P+ I R + +L V E
Sbjct: 179 TLQPDQTIQGLRIYEFDTDYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGGAT 238
Query: 215 -----------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + + ++ + +
Sbjct: 239 PQDSKQAVPGAPDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYIR 298
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
N R E + +V P ++ M ++ + +R+ + V GI G
Sbjct: 299 HLRD-NKQDTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIMLGLS 357
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 FQLVNNLFSHVGLLNTWPAIFTAILPGALYLAVALVALRWVE 399
>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 389
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 121/362 (33%), Gaps = 6/362 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY FK + ++ + L + + + + + +P
Sbjct: 1 MNSTLYRYIFKEIPPPFFLGVATFTFVLLMGRLLRLTDMVVTK-GVPLGDVLRMILYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE++ +A GIS++ LL P +++ + +
Sbjct: 60 SFLLVTIPMAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPPVFSLAVITYLAGAFIT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G DL+ +N + G +
Sbjct: 120 IYAVPKGNSAFKDLLVTVVENRVSLGVKEKVFNGDFPGIVIYCDGYDERTQVMSGIIIQD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + I+ A + V+L + + ++ I +
Sbjct: 180 ERDPLEPSTIMAGHGTINADHASRSVRLHLASGSIHRTAGREGYRLVQFSDYDLHINLSQ 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ ++ SN + +++ +P + TL+ + +
Sbjct: 240 ASQAVKRDERDMSLAELRTNWNSNHFDNKGRLEMRLEYHRRFSLPFACLIFTLVGMPLGI 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ RS + A IF + Y I++ K+ G+ +L P AA +P +L ++ I +
Sbjct: 300 QNQRSGK-AAGFAISIFLLLLYYIILSACKTLGEKELLNPFLAAWVPNMLFVAFGIYLFR 358
Query: 357 QK 358
+
Sbjct: 359 KT 360
>gi|260062387|ref|YP_003195467.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
HTCC2501]
gi|88783950|gb|EAR15121.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
HTCC2501]
Length = 360
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 128/360 (35%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ RY K YL T LL + + +++L E +M + + +
Sbjct: 1 MLTIIDRYILKKYLSTFGLMLLLFVPIGIMLNLAEQIGKMID-NEAPLVEILIYYGNFTI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + P + I + +E+V + G+S + L P+ +G+ ++ + L+
Sbjct: 60 YIGSLLFPIFLFLSIIFFTSKMANNTEIVAILSSGVSFGRFLRPYWIGASIIAVLMFLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I S K + ++ G K + + Q+ +I P I +FT
Sbjct: 120 MFIVPSASKGFNEFKFKYLKKGSKDRVTSNIFNQLGESD---YIYVSSFDPARQIGYNFT 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMD 235
+ ++ ++ + + + + I + ++D
Sbjct: 177 YEHFGEDGELEYKISSANIRWLEEDSLYRLTSYTRRNLRGDTEIVETRRRLDTLFAFQID 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S +++ +E+ + ++ + + Y +P+ +T+I +VS
Sbjct: 237 DLTPVSYIAETKNLFELNQFIADQRRKGASNVNTYVMVKYKRWALPVTAFVLTIIGVAVS 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A+GI F+ + + + + P+ A IP I + L +L
Sbjct: 297 -SIKRRGGMGVNLAFGIGVAFIYIFMDKVFGTLAEQSGFPPLLAVGIPNIFFLVLGYFML 355
>gi|313203772|ref|YP_004042429.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
WB4]
gi|312443088|gb|ADQ79444.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
WB4]
Length = 367
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/352 (13%), Positives = 112/352 (31%), Gaps = 2/352 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T + ++ + + V D+ E + + +P
Sbjct: 12 KRIDTYIIKKFLGTYFFSIVLILSISVVFDITEKLDNFVSHNAPLKAIVLDYYLNFIPFY 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P T + I + +E++ + G+S +L+ P+++ + ++ + +
Sbjct: 72 MNMFSPLFTFIAVIFFTSKMATNTEIIAILSSGVSFRRLMLPYMISAAVIATISFTLGGF 131
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G K +D ++ + + + I +
Sbjct: 132 VIPHGTKKMLDFEDKYVRQIKQSNATNLQMEVAKGVIMYIGRFEVSNNTGYQFSLEKFEG 191
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D + L++ S I ++ + F +
Sbjct: 192 KTLASRLTAETITWDSLYSWKISNYLQR-DFNGMREQITKGISKDTTIMVQPEEFYITAA 250
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S ++ + + + + E +Y +PL MTLI S+S R
Sbjct: 251 EAPQMSIVKLGSYLKRQRERGVGNIKLFEDDYYKRFSMPLAAFIMTLIGVSLSSRKVR-G 309
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ + + SF +G + AA IP ++ + + I +
Sbjct: 310 GMGLHLGVGLALSAIYILFSAMSTSFSVNGSMSAFAAVWIPNVVFLLVGIYL 361
>gi|220916597|ref|YP_002491901.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954451|gb|ACL64835.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 360
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 123/360 (34%), Gaps = 9/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALTGVVGIYLAVDFVDNASAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDLV 119
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + ++ + + + + +E T
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGF 237
+ + + R DA L+ V + + + + D F
Sbjct: 180 YELGEGFTLARRIDAARMHPDGRAWILEDVEDRTFRQDGSMGLERADRKRYAFDEPPDAF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +I+++ + + + Y + PL + L+A +++L
Sbjct: 240 AVIAGKPDQMRWNTLIRQIGIRKRLGQP-VTEFQLERYDRLAYPLAGIPGALLALALALR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + + + + + + G SG + P A+ P ++ ++L + + +
Sbjct: 299 RDRKGHLAAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLALGAIAVHR 358
>gi|85859086|ref|YP_461288.1| permease [Syntrophus aciditrophicus SB]
gi|85722177|gb|ABC77120.1| permease [Syntrophus aciditrophicus SB]
Length = 394
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 104/362 (28%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K L+ L ++ + + ++ + M +S A L +P
Sbjct: 1 MKIINRYLVKEILQPFGIVLFVLTFVLLMGKILQLMDLMINK-GVGLSHIARLILFLLPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P LV ++ L+ +EL + +A GIS+++L P ++ +++ + T
Sbjct: 60 FLVFTLPISLLVSVLIALGRLSSDNELTVLKASGISLYRLTPPILMIALVSFMLTAATTL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
+ LI N + N + D
Sbjct: 120 FLVPYSNTATKALIFNVARNKASIGIKEKVFNADFNGVVLYAEKVPSDGRFMEGVLVSDQ 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++L+ Y Q
Sbjct: 180 RTADEPGTIIAKKAFLVADPKSMTVTLRLEDGSTYFVAENMKIFRKMDFKTYDINLDLQS 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH-------NYRAETQFYFLIVIPLMLVAMTLIAA 292
S + + N+ + + Y IPL + +++A
Sbjct: 240 SSSDAEKMRTKALKEMTPRELIQNLKSGRLDDKIYRKTAMELYEKFSIPLSCLVFSILAI 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ + G+ + + Y + + G L P + IP IL
Sbjct: 300 PLGVKPHHRSVKSRGFTIGLMTVLLYYLLQLGCEGMVTVGRLSPFLGSWIPNILFTIAGT 359
Query: 353 LI 354
++
Sbjct: 360 VL 361
>gi|85374866|ref|YP_458928.1| permease [Erythrobacter litoralis HTCC2594]
gi|84787949|gb|ABC64131.1| predicted permease [Erythrobacter litoralis HTCC2594]
Length = 365
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 126/358 (35%), Gaps = 3/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K ++ L L+ ++++ ++DL ++ + A RVP ++
Sbjct: 10 TLTLYLAKLFIVRILAVLVMLVLVLMMLDLLSTSGEILAVEGNGQGELLTYAGLRVPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P ++ + L+ + + +
Sbjct: 70 QRFLPYSVLLATIITLIALNQNSEVIAMKAAGLSAHQVLAPLLLTAGLVALVSFGFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
T + I++ + + D T
Sbjct: 130 VTRATATLKAWEATEFGAVPPDSDVKAN-VYITDGTNILTARTVAGTGADIRLGDVTWYR 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQKFSE 242
+I + A A + +L+ + + + + + +
Sbjct: 189 RAPTGQIAEQVRAVSASFVDPGWQLENPQSFDITTANTTTSEAMVVGEGLTPAQIELEAI 248
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F+ + + +++ + PL M L+ A + +RS
Sbjct: 249 DPDAVPFWRLGSAIDSYEAIGRR-TAELRAKWWHKLSGPLSAFLMPLLGAVAAFGLARSG 307
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q I G+ GF + + + G G P AA P +L + + +L++ E+
Sbjct: 308 QLFIRAVIGMGLGFAYFVVDNAALAMGSFGGYPPFLAAWAPFLLFLLVGETVLIRTEE 365
>gi|284037837|ref|YP_003387767.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
gi|283817130|gb|ADB38968.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
Length = 358
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 118/353 (33%), Gaps = 1/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y K +L+T ++ ++ +++V +ID E + + +P
Sbjct: 1 MKLLDAYILKRFLQTYIFVVMVIVLVVVMIDYTEKVDNFHKTHAPGNEILFNYYLNFIPY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P + + + + L +E++ + G+S +LL P+V+G+ +L + T ++N
Sbjct: 61 WANYISPLMVFIATVFLTSRLAARTEIIAILSSGVSFVRLLLPYVLGATVLAVATYFMVN 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I ++ ++ + N + + +
Sbjct: 121 YVIPKANKTRIAFEIKYINDAYNFSGRNVHLKIAPNTYAYLESYNNQSNTGYKFTMERVE 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K+ + D K + +K D F
Sbjct: 181 GNQLKQKLSADHIEWDAKKKKWTVFDYKIRTINGPQETLTPGAKIDTTLNLKPDDFSSDF 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + E+ + + Y P ++ +T+I +S SR
Sbjct: 241 NLYETLTRPELNDHIELLQSRGADGVETYLLEKYSRDTRPFAIIILTVIGVIMSARKSRR 300
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
VA G F F + K +SG L P+ A +P + ++ +L+
Sbjct: 301 G-VGWQVALGFFLAFTYLLFFMLAKGIAESGNLNPIVAVWLPNAIFAAIGVLL 352
>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
Length = 355
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 72/358 (20%), Positives = 135/358 (37%), Gaps = 10/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + +G + L D + + Y +S+ V +P +
Sbjct: 3 LAKYINFEFFINISLVAIGLVFLFAFFDFLQEIGNL-NSGKYDLSKIIVFITLSMPGHLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+IIP L+ + L+ SELV+ R G+SI Q+ + ++ S+ G+ T +V N I
Sbjct: 62 EIIPLSCLIGAMFTVGQLSGNSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLIT 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
EK + D WM+ N +I + + +
Sbjct: 122 PVSEKNAQQIKISSTDGSVTTDFKSGVWMKDGNNFVNIEN-----VLPDASLRNIHIYEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKFS 241
D + DA+ N +L+K+ + D + T IK +
Sbjct: 177 DNDFSLRSIVDAEKGRYENGIWELEKIKQSFILDEGFDVKTLPSGTWKSMIKPEMMNVLL 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S +++ +++ K+N R E F+ I+ P+M + M L A RS
Sbjct: 237 ISPDRMSIFDLNDFINYLKKNNQK-TSRYEVSFWEKIIQPVMPIIMILFAVPFGFFQERS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + GI G + + ++M+ G P+ A+IP I+ + ++I ++ E
Sbjct: 296 GGKYLKMFLGIIFGIIYQIMNSMMRHIGVLNDWEPIITAIIPSIVILGIAIYLMFYFE 353
>gi|78184805|ref|YP_377240.1| permease [Synechococcus sp. CC9902]
gi|78169099|gb|ABB26196.1| possible permease [Synechococcus sp. CC9902]
Length = 384
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/370 (13%), Positives = 106/370 (28%), Gaps = 17/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L+ + +L I + + + I L +P +
Sbjct: 14 LLDRWLLAEIAAPLLFAVAAFTVLGLSIGVMFELAR-RLVDGLPILVALQLLLLNIPSFL 72
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL ++ + L+ SEL R++G+S +L+ P + SILL T + + I
Sbjct: 73 VLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTIRLVVPALALSILLTGLTFVFNDVI 132
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD----------IFIGAKKILPEN 173
+Q+ + D + +
Sbjct: 133 VPRANTQAEITLQRGLGRALATERGKDITFNSFGKIYDPKTQTSSTGLRQLFYARRYEGG 192
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLN 229
+ + + + + + + +
Sbjct: 193 EMLDVTLLDFSRADYRQMWIAERAVYNESKAMWEFFNGQVLTLNPNGSTTRLAFDENFYP 252
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ + + + + I + + R + P+ +
Sbjct: 253 LSSGPLQVAELPDDANDMTLSQAISAEKVESNAGNIKAARKLRVRIQEKFSFPMACIVFG 312
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ I Y + S G SGIL P AA +PV++++
Sbjct: 313 LIGSSLGARPGSRTSRSQGFGVSILLILGYYALSVSFSSLGVSGILPPFLAAWLPVLISL 372
Query: 349 SLSILILLQK 358
+LL++
Sbjct: 373 GAG-GLLLRQ 381
>gi|119357818|ref|YP_912462.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
gi|119355167|gb|ABL66038.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
Length = 358
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 130/357 (36%), Gaps = 8/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY F+ + + + + L +I + E ++ +L + + +P
Sbjct: 1 MKLLDRYIFRQFAVSFFFASAAFIALFILISMVENLDEFIDL-GIGPGKITGYYLSSIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ I+V L+ SEL ++ GIS+ QLL PFV+G ++ +L
Sbjct: 60 TLMVTSPVAALLSAILVAGKLSAMSELSAIKSAGISLKQLLKPFVLGGTIICSINMLNSC 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + Q M I I + ++ ++
Sbjct: 120 WLGPA--AAADKIAFERTSFNRTQNLQANSNMHILESGNRIVSIGELLINQSKGLHISIE 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDGF 237
+ + K LK+ + + + TL + + +
Sbjct: 178 QFNGTRLSTRMDAPEMIFDQNVHKWVLKETSSRSFTGNNEQYHLNPGNDTLGMAMSLKSL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K + Q + E + +K+ RA+ + + I +P + LI +S
Sbjct: 238 RKLNVQPDEMNILEHYRYTREKDKAGFSGLDRAKVKLHAKIALPFASLISILIGVPLSTI 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +F GF+ + + + G +G+L P AA +P +L + ++ ++
Sbjct: 298 RKR-GGKAAEFSITLFIGFLYLGLQKTIATIGYTGLLEPWIAAWLPNMLFLIVAGIL 353
>gi|298372644|ref|ZP_06982634.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
gi|298275548|gb|EFI17099.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
Length = 389
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 124/357 (34%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + YL T ++ + + V D E + E + +P
Sbjct: 35 ILDRYIMRKYLSTFFMCIIMIISISVVFDYAEKVDDFSENNAPMRAIIFDYYFNFIPYFA 94
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I + +E++ + G+S +LL P+ + + L+G+ + L+ +
Sbjct: 95 NLFTPLFAFISVIFFTSKMAYNTEIIAMLSTGMSFKRLLVPYFMSATLIGLMSFLLGGFV 154
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K +D ++ + I + + ++ + +F+
Sbjct: 155 IPASNKPRLDFEDKYYRKFRSELVTNI----QLELEPGVVAYFERYEENINRGYNFSLEK 210
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ K + + + L V+ + + + I + F
Sbjct: 211 FEGKKLVSRLTAEYIDMDSLYHWHLVNYVKRDFKGMREIMTMGDGLDSVIKMDPQDFFIT 270
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E + ++ + + + I + E ++ +P + +TLI S++ R
Sbjct: 271 GEDAPQMTNTKLYQYLRRQKERGIPGAQKFENEYNNRFAMPFAALILTLIGVSLASRKVR 330
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + +GI + T+ F +G + + A +P I+ ++ I++ +
Sbjct: 331 -GGTGLHLGFGIALSAIYILFCTVSSMFAINGTMPSLLAIWLPNIIFTTIGIILYAR 386
>gi|126175309|ref|YP_001051458.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|217972440|ref|YP_002357191.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
gi|125998514|gb|ABN62589.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|217497575|gb|ACK45768.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
Length = 370
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ L V YQ D Q
Sbjct: 181 PDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPVDELVKIEGAEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + ++ + + GI+ I + + + +L
Sbjct: 294 VRQGKFAK-MFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFLL 349
>gi|119503286|ref|ZP_01625370.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
gi|119460932|gb|EAW42023.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
Length = 353
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 116/359 (32%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G RY L T+ L + L + + + + + P+Y + + A +P
Sbjct: 1 MGRFDRYLAGNVLGATVGVLAVLVGLDALSSVIDELDDLS--PDYGFTDALIYVAFTLPR 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + +PF L+ +V L TSEL + RA G S+ QL + ++LL + LV
Sbjct: 59 RLHEYVPFAALIGALVGLGRLAATSELTVVRAAGRSLPQLALGTLRPALLLAVLGFLVGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ E+ + + + W + + + I
Sbjct: 119 FVSPVAEQFAVSHKALAQGSQSSFTGRGGVWNRDGD-----TFIHVSAVERGGIIHGVQL 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
+T D++ ++ A+ + L+KV + + + +
Sbjct: 174 LTFDEERRLTRSLRAERGTYQGGQWLLEKVSRTELTQDRAVTDALIQQVWETEVTPQLLA 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + K E F+ ++ P + + L+A S
Sbjct: 234 LEAVALDSLPTLELWPYAQYLRKQG-LMYRDVELAFWRKVLQPFAVAGLVLVAMSFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + L + AA P+ + +L +
Sbjct: 293 LREGSLGARIFTGVIIGVVFRISQDFFGPASLIFGLPAILAAAAPIGVCWIAGGWLLTR 351
>gi|304410148|ref|ZP_07391767.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|307302141|ref|ZP_07581899.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
gi|304351557|gb|EFM15956.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|306914179|gb|EFN44600.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
Length = 370
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ L V YQ D Q
Sbjct: 181 PDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPVDELVKIEGAEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + ++ + + GI+ I + + + +L
Sbjct: 294 VRQGKFAK-MFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFLL 349
>gi|16330198|ref|NP_440926.1| hypothetical protein slr0882 [Synechocystis sp. PCC 6803]
gi|1652686|dbj|BAA17606.1| slr0882 [Synechocystis sp. PCC 6803]
Length = 394
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/368 (13%), Positives = 115/368 (31%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F ++ + L I + + + ++P +
Sbjct: 22 VMDRYLFVELFLPFIFGMGMFTSLALSIGTLFDLVRRVTESGLPMDIAVKILFLKMPEFV 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ + L+ SEL+ R+IG+SI++L+ P ++ I++ + + I
Sbjct: 82 VLAFPMSMLLASLMAYSRLSSDSELIALRSIGVSIYRLVVPALLFGIVVTGIAFVFNDRI 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + + + K IL E+F
Sbjct: 142 TPAASYEALATLDRAIHQDRPPRQEQNIIYPEYGMVRQPDGNEKNILKRLFYAEEFNGSE 201
Query: 184 IDKKNKIIHRK---------DADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLN 229
+ + + + I + Y R + L
Sbjct: 202 MKGLTILDRTQSGVNQVLTAERASWNISENTWDFYDGTVYLIAPDGSYRNIVRFRHQQLA 261
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + + + + + S R E + +P +
Sbjct: 262 LPRAPLDLASQERKDGEMTIAQSRRYLEVLRLSGDDKKVRKLEVRIQKKYALPFVCFVFG 321
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI A++ + + + F Y + + +S G G L P AA +P L +
Sbjct: 322 LIGAAIGVRPQ-NTNKATSFGICVGLIFFYYLLSFLSESMGIWGALDPFTAAWLPNFLGL 380
Query: 349 SLSILILL 356
++L+
Sbjct: 381 IAGTILLV 388
>gi|326388615|ref|ZP_08210208.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
gi|326206866|gb|EGD57690.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
Length = 356
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/355 (14%), Positives = 120/355 (33%), Gaps = 4/355 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + LL ++++ ++DL + R P ++ + +
Sbjct: 4 YIARLFAVRIVAVLLMLVLVLQMLDLLSESGHILAAKGNGQMELLRYGMLRTPQLVSRFL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P+ L+ I+ LN+ SE++ +A G+S Q+L P + S +FT +
Sbjct: 64 PYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVSAAASVFTFTFNERVVVRS 123
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
Q SD+ + + + +F + + D
Sbjct: 124 TATLKAW-QDVDYGAVPTDSDVKSNVWLQDGPNIVFAKTISGRGTATRMSEVSWYRRDPT 182
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDGFQKFSEQFA 245
+ A LA + + + + ++
Sbjct: 183 GVVTEIVHAPLATYTHPGWRFDHPTSFDVQSAALTTLPGPKVYASGVEPTQIIIRKTDAD 242
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S ++ + ++ + + + +++ I PL V M L+ + + +RS +
Sbjct: 243 RESITQLSQSIAEIQAAG-YRTNELDGKWWHKISGPLSAVLMPLLGSVAAFGLARSGKLF 301
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + + G G P AA P +L + + +L++ E+
Sbjct: 302 VRAVIGMALGFAYFVVDNAALAMGNFGGYSPFLAAWSPFLLFLLIGETVLIRTEE 356
>gi|33151746|ref|NP_873099.1| hypothetical protein HD0552 [Haemophilus ducreyi 35000HP]
gi|33147967|gb|AAP95488.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 360
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 131/360 (36%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + LL + LVF+I L E +GE NY A +P
Sbjct: 6 MNILERYIGKTIIMMMFAVLLMSSGLVFIIKLVEEFKNVGE-GNYDALTATYYALLMLPS 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I++ +P + L+ ++ NL SELV+ ++ G S +++ + +I + I T+
Sbjct: 65 DIKEFVPVVLLIGGLLGLSNLASHSELVVMQSTGFSRFRIGLAVMKTAIPIIILTMSASE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I E+ ++ + G ++ W + N I + N
Sbjct: 125 WIIPKVEQFARNMRSVAQSGGSMLSTNGGFWAKDGNNFLYIRHIENEHQLNN---ISIYH 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ A L+ +G + + I S
Sbjct: 182 FENKVLTSVSQADSALFNGKDWTLQNLQTATITDHGIQTTHQANQNWQTTITPSKLGIVS 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ + R + F+ + P+ + M L+A S RS
Sbjct: 242 LKPESLSIAGLADYVSFLTETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFIFGPLRS 300
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILILLQKED 360
+ + GI +GF+ Y + + L ALIP ++ +++ +L +K D
Sbjct: 301 SAMGTKLFIGIIAGFIFYVSNIVFGNMTLVFSWLPIAIGALIPSLICLAIVWWLLTKKRD 360
>gi|295690098|ref|YP_003593791.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295432001|gb|ADG11173.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 353
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 130/358 (36%), Gaps = 11/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + L L M ++ ++DL ++ + + ++ A AA R+P + +
Sbjct: 3 LQLYVLRTVATRILGAALILMSILQILDLLDVTTDILDR-GLGMAGVAYYAALRLPRLFE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ P L + F L R S +V RA GIS ++++ + I + + L +A
Sbjct: 62 QVAPIAVLAGGLFAFSQLARESAVVAMRASGISGYRIVGMAMPAVIAVMLLDALCGQVLA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ D + +++ + S+ + T
Sbjct: 122 PRSDPTLADWWRNTTPVAERKAPSPRTFRAGSDLVIGAD-----ASADGREITSLTIFRR 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQKFS 241
+ K ++ + +A A+ + L+ ++ + S ++ Q
Sbjct: 177 NAKGILVEKVEASKALYDGRRWTLQSPKTTRFAGDLAQTSTAASINWPTALRPQDVQGLF 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ + + + + T F P + + M L++A V+L RS
Sbjct: 237 GDDSAPTAATARRALENGG--SDRPESFYATHFQSAFASPFVSLVMLLLSAPVALANFRS 294
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
Q +++ G+ +G + ++ + G+SG L P+ A + +L+ L E
Sbjct: 295 GQGAVLLTAGLGAGLLFLVANGMLTALGESGALSPLLAVWAAPAIFGALAARTFLALE 352
>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
Length = 359
Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 131/354 (37%), Gaps = 4/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K YL T LL + + ++ L+E N+M + ++ + I
Sbjct: 3 ILDKYILKRYLVTFSVMLLLFIPIGIMVHLSEQYNKMQD-NEAPLNEILMYLGNFSIYIG 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + I L +E+V + GIS + L P+++G++++ F +L+ I
Sbjct: 62 SMLLPIFLFLSVIFFTSKLAGNTEIVAMLSSGISYGRFLRPYLMGAVIVAAFMLLMGMFI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K + ++ G + + + Q++ + +
Sbjct: 122 VPNASKGFNEFKFKYLKKGKQDRVTENIFNQLNANDFIYVSRFDPTRDIGYNFSMEHFNK 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIKMDGFQKFS 241
+ + + + V G I + L+ P K++ S
Sbjct: 182 DNVLEYKLSAANIRWIEADSIYRLTSYVKRTLKGDTEILETKRRLDTVFPFKINDLTPVS 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ +E+ + ++ + + Y +P+ +TLIA +VS R
Sbjct: 242 YVAETKNLFELNEFIANEKRKGASNINTYILVKYKRWTMPITAFILTLIAVAVS-SQKRR 300
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +A+GI F+ + + + P+ A ++P +L L+ +L
Sbjct: 301 GGMGVNLAFGILVAFVYIFFDRVFGTLAEQSGFSPLLAVIVPNVLFGFLAFYLL 354
>gi|119773933|ref|YP_926673.1| hypothetical protein Sama_0796 [Shewanella amazonensis SB2B]
gi|119766433|gb|ABL99003.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 369
Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY FK K + LL + + + + + S L +P +
Sbjct: 2 IVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASD-GEFPASLVVTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ ++L +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
E+ ++++ + + + + +F+ E D
Sbjct: 121 TPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++KL V YQ +D Q
Sbjct: 181 PDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + A + ++ I IPL + MTLIA ++
Sbjct: 241 EVDERRRKMSALPLNQLLD-------QNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ I + ++ + + ++ + + + I++L
Sbjct: 294 VRQGKFAKMLP-AILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLL 349
>gi|167622903|ref|YP_001673197.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
gi|167352925|gb|ABZ75538.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
Length = 371
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 121/357 (33%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + + + + S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNMPFLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
A E+ +++ + + N + +F+ + +
Sbjct: 121 APWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPE 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + +++L+ V+YQ +D Q
Sbjct: 181 PDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S I + M A +F++ + IPL + MTLIA ++
Sbjct: 241 EVGERRRKLSAMPIGELMDI-------DTPEASAEFHWRLAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + + I + ++ + + G++ +++ IL+L
Sbjct: 294 NRQGKFAK-MFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLL 349
>gi|160876367|ref|YP_001555683.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|160861889|gb|ABX50423.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|315268557|gb|ADT95410.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
Length = 370
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ L V YQ D Q
Sbjct: 181 PDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPVDELVKVEGAEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + ++ + + GI+ I + + + +L
Sbjct: 294 VRQGKFAK-MFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFLL 349
>gi|159030859|emb|CAO88538.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 387
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 113/361 (31%), Gaps = 17/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY L L+ + L I N ++ + +VP +
Sbjct: 16 LIDRYLISQLLPPFLFSVGLFASLGVAISNLSDLANQVVDANLPLASALEILLLKVPEFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++ + L+ SE V ++ G+++++L P S+++ + T L+ +
Sbjct: 76 TYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYV 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---------PQQDIFIGAKKILPENH 174
+ +++ Q + + + + + +
Sbjct: 136 VPNANYRATEILVQKINKEANFWKNKDFYYPDYEIKTLENGTINRNLRSLFYAEQFDGEK 195
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTL 228
+ + ++ I D+ ++ + Y+ + +
Sbjct: 196 MKTVTVIRWLKEELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYSQVIPFKTEKI 255
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAM 287
+ F + S + + I+ + S R + + I P + +
Sbjct: 256 ALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDEKRVRFFQVRIQQKIAFPFVCIVF 315
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
I ++ R ++ + F+ Y + ++ S G + L P AA +P
Sbjct: 316 ATIGCALGSLPQRISR-GTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLPNFFG 374
Query: 348 I 348
Sbjct: 375 F 375
>gi|261855830|ref|YP_003263113.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
gi|261836299|gb|ACX96066.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
Length = 376
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/364 (12%), Positives = 120/364 (32%), Gaps = 10/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L RY + + L +L+ V + ++ +YS P
Sbjct: 1 MGTLDRYLIRAIVVGGLASTAAFALLIVVFGAIDELPKV--NASYSAIDALSFVLMTTPG 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P LV ++ NL SEL + R G+S+++L P +VG+ +L + +L+
Sbjct: 59 YLYDFYPAAVLVGGLLSLGNLAAHSELTVMRCSGMSMFRLARPVLVGATILALIGMLMGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G++ ++ + + +G W++ ++ +
Sbjct: 119 TIGAWGQEKANEMRAEAQGSGVSMNLKSGLWLRDGQRFINVGQAIVGGRLNRVRVFTVNA 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM---DGFQ 238
+ + ++ ++ + ++ + + + +++
Sbjct: 179 QSQPVQLLSASYAISEGGDLWRLYDVKESTLDTKVPGNSVKVRFVPVQEHVRLFSQKILN 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ + + N + + + P+ ++ M +A
Sbjct: 239 IAVLNPRHMNILQLHSYVDYLR-KNQLDASAYSSALWARVFAPVSVLVMLFVALPFVFAP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----LPVAAALIPVILTISLSILI 354
RS + I G + T++ I+ +F + +P +A +P L L +
Sbjct: 298 QRSGGAGRWLFIAIVLGVVYLTLVQIVSAFAPVYGVGHPFIPFMSAAVPPALFAMLGVYA 357
Query: 355 LLQK 358
+
Sbjct: 358 FRRL 361
>gi|241765202|ref|ZP_04763186.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
gi|241365131|gb|EER60003.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
Length = 368
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 53/371 (14%), Positives = 123/371 (33%), Gaps = 17/371 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRV 59
+L R+ + + LG + L F DL + +G Y +S + + +
Sbjct: 1 MKVLRRFIHREAFFAVGFVTLGFLALFFFFDLIDELRWVGSTGQNGYQLSHALLFVSLSI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L + + T +
Sbjct: 61 PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +A E+ + + G W++ + + + + + +
Sbjct: 121 GDYVAPLTERAAQLIKVRHL--GRLTSGATGAWLKERQQDHSFAVNVRALSSDGGMVDVR 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--------TTLNIP 231
+K A L++V + + ++
Sbjct: 179 IFEFDEKGRLASQIHAATGQFGSAGTWDLQQVQRNSFVQKSSEEARVESISAPVWQWPTR 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
I D + + ++ + + + R E +F+ + PL + M ++A
Sbjct: 239 ISADMVAASLLKPDRMATVDLFQYIRHLEANGQ-SAQRYEIEFWRKVFYPLSCLVMVVLA 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ R+ V G+ +G + + + G P A P ++ LS
Sbjct: 298 LPFAYLHFRAGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYSVLS 357
Query: 352 I----LILLQK 358
+ ++L++
Sbjct: 358 LAAFGWLVLRR 368
>gi|126658379|ref|ZP_01729528.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
gi|126620311|gb|EAZ91031.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
Length = 394
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/368 (13%), Positives = 122/368 (33%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY F L L+ + L I + +S + ++P +
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMRILVLKMPGFV 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++ +V + I
Sbjct: 82 SLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVNDWI 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + +Q+ + + Q+ +L E++
Sbjct: 142 APAATHEAALTLQRAVNQERPDFKERNIVYPEYKTIQEEDGQQATVLTRLFYAEEYNGDK 201
Query: 184 IDKKNKIIHRKDADL---------AIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLN 229
+ + ++ I ++ Y R + L
Sbjct: 202 MKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQLA 261
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + F + + + + S R + + +P + +
Sbjct: 262 LPRAPLDLANRRQNFTEMTIAQTKEYLKAMQLSGDEKRVRKVKVRLQEKYAMPFVCLIFG 321
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++ A++ + + + F Y + + S G GIL P A +P IL +
Sbjct: 322 VVGAAIGVRPQ-NTNKATSFGVCVGLIFGYYLLAFMSTSLGIWGILTPFLGAWLPNILGL 380
Query: 349 SLSILILL 356
+ L+L+
Sbjct: 381 TAGSLLLI 388
>gi|300690718|ref|YP_003751713.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
gi|299077778|emb|CBJ50416.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum PSI07]
Length = 398
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 51/397 (12%), Positives = 115/397 (28%), Gaps = 42/397 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + +YF + ++ L + L D+ + Y+ + P
Sbjct: 4 MP-VYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGR--YTTLIAFFHVMLQAP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++IP L+ I VF + SE I R G+ + L ++ L + T +
Sbjct: 61 TRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPE 172
I E+ + + + W++ P + F+ + P+
Sbjct: 121 EFIGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPD 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------------ 214
I R + + + +L V E
Sbjct: 181 QTIRNLRVYEFDADYRLSSIRVAQQASYQGHQRWELNDVTETRFIEFPRQAGAATPQDSK 240
Query: 215 ------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ + + + ++ + +
Sbjct: 241 QAVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRD- 299
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N R E + +V P ++ M ++ + +R+ + V GI G +
Sbjct: 300 NKQDTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIMLGLSFQLVN 359
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ G + A++P L ++++++ L E
Sbjct: 360 NLFSHVGLLNTWPAIFTAILPGALYLAVALVALRWVE 396
>gi|89900898|ref|YP_523369.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
gi|89345635|gb|ABD69838.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
Length = 368
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 59/371 (15%), Positives = 127/371 (34%), Gaps = 17/371 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL--PNYSISRGAVLAATRV 59
L R + L + LG + L F D E +G Y + A +
Sbjct: 1 MKTLRRLIYGEVLYAVAFVTLGFLSLFFFFDFVEEIQAVGRYSEAGYRLVHALTFVALMI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L ++ + + T +
Sbjct: 61 PSHLYELLPIAVLIGTIFVMARLAQSSEFTILRTSGLGPWRALKALLLLGLGFVVLTFAI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ I+ ++ G L + G W++ + + P+ +
Sbjct: 121 GDYISPPADRAGQLLKA--RYQGSITVGQTGAWLKEQQTNAQYAVNVSAMAPDGSMRGVR 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--------NSTTLNIP 231
++ + + +D L +V ++ D +S
Sbjct: 179 VFEFDNQGFLMSTLQAESAQFGADDAWNLSRVSRTEFPPRDADTARIDRAQLDSFRWPNQ 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
I + + S ++ + + +N R E +F+ + PL + M ++A
Sbjct: 239 ISAEMVAAALLKPERMSTIDLFQYIQHLR-ANSQVAQRYEIEFWKKVFYPLSCLVMVVLA 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ RS V G+ +G + + + G P A +P ++ + LS
Sbjct: 298 LPFAYLHFRSGGIATYVFGGVMAGISFFLLNNVFGYMGNLQNWQPWLTAALPGMIYLVLS 357
Query: 352 I----LILLQK 358
+ ++L++
Sbjct: 358 LTAFGWLVLRR 368
>gi|121605071|ref|YP_982400.1| permease [Polaromonas naphthalenivorans CJ2]
gi|120594040|gb|ABM37479.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
CJ2]
Length = 379
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/382 (15%), Positives = 126/382 (32%), Gaps = 28/382 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN-----YSISRGAVLAA 56
+ R + L + +G + L F DL + +G+ Y I + A
Sbjct: 1 MKTIRRLIYGEVLGSIALVAMGFLALFFFFDLVDELQYLGKNNGAGDSIYQIRHALLYVA 60
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+P + +++P L+ +I V L ++SE I R G+ W+ L + +
Sbjct: 61 LLIPNHLYELLPISVLIGSIFVMSRLAQSSEYTILRTSGLGPWRALKLLLWLGAFFVALS 120
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
LV + IA + E+ + + W++ + + ++ P N +
Sbjct: 121 FLVGDYIAPASERAAQLMKA--RYQNKITVGQTGAWLKEKQVSSNFIVNVSELSPNNEMH 178
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----------------P 220
+ + + A N +L+ ++
Sbjct: 179 GVRIYEFNHQGLIVSTTEAPVAAFSLNTAWQLRNATRTEFDVTTSAGGVNAPAQQAKVKR 238
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
D S I + + + ++ + + R E +F+ +
Sbjct: 239 TDVASYRWPTEISTEMVSVALLRPDRMATLDLFNYIRHLEANGQTSQ-RYEIEFWKKVFY 297
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + M ++A + RS V G+ G + + + G P AA
Sbjct: 298 PLSCLVMVMLALPFAYLHFRSGSITSYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWLAA 357
Query: 341 LIPVILTISLSI----LILLQK 358
P +L +++S+ ++L++
Sbjct: 358 ATPGLLYMAISMAAFGWLVLRR 379
>gi|157960739|ref|YP_001500773.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
gi|157845739|gb|ABV86238.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
Length = 371
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 123/357 (34%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + + + ++ S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASD-GDFPASLVMTLLGLNMPFLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRITLLLAVINMVFTAFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
A E+ +++ + + N + +F+ + D
Sbjct: 121 APWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + I +++L+ V+YQ +D Q
Sbjct: 181 PDDETGVANVVVARTGKVVEDEIGGQRLQLEDGVQYQGNPKRVDYQVVEFGGYQMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E+ S I + M + A +F++ + IPL + MTLIA ++
Sbjct: 241 AVDERRRKLSAMPIGQLMDI-------DSPEATAEFHWRLAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + + I + ++ + + G++ +++ IL+L
Sbjct: 294 NRQGKFAK-MFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLL 349
>gi|289678193|ref|ZP_06499083.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 321
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 64/329 (19%), Positives = 114/329 (34%), Gaps = 12/329 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A D +LK V + + +T ++ +
Sbjct: 173 RYRFDDQRHMLTSSFAKEAHFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|221133510|ref|ZP_03559815.1| permease YjgP/YjgQ [Glaciecola sp. HTCC2999]
Length = 389
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 43/355 (12%), Positives = 109/355 (30%), Gaps = 5/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K K+ M + + + + S A P++
Sbjct: 2 IIFRYLLKETFKSQFAIFFILMAIFITLRFVRVLGDATD-GEIPASLVMGFLALYSPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ SE+ + +A G+S W + ++ +++LG+ T + +
Sbjct: 61 SLILPISFFLGIMMAHGRFYVDSEMTVLQACGVSEWYVTRVMLLLAVILGLLTASITMYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L ++ + I ++ N+
Sbjct: 121 APLAVESEYQLREKAGSEAGIAAIIPGRF--QQTGNDAAVIFVHEVESANNQLTKIFLSQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I+ R + + + + G+ + D ++ +
Sbjct: 179 INADQPKKVRVIYSQTGTIEVQSDGTQQLILRNGQQYDGSIGQQNYQRVNFDEYRIQIGE 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + + ++ A + + I IPL L + LIA +S R +
Sbjct: 239 QKVESMRRKVAALPTLELIGD-NSDEAIAELQWRIAIPLALPFLVLIAVPLSKVNPRQGR 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ I + ++ + + G + + + + ++L ++
Sbjct: 298 FGK-LFPAILMYLGYFLLLMAARRALEDGKIPAGLGLWWVHGIILFIGTVLLSRQ 351
>gi|269468373|gb|EEZ80038.1| permease [uncultured SUP05 cluster bacterium]
Length = 360
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 121/358 (33%), Gaps = 4/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K LK +L ++ + + E +G +Y++ +P
Sbjct: 1 MKILDRYIAKTLLKYSLSVMVVLVGIFAFFKFLEEVGDIG-RASYTLFDALAYVGLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + I L+ I+ L SEL+I R GIS+ ++ + S++ + ++
Sbjct: 60 IVYALSSLIILLGCILGLGYLAGNSELIIMRGAGISVVEITKTTLKVSLVFIVIMIIFGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I+ Q S W++ N + + E + +
Sbjct: 120 FISPLFSDYAKKYRAQALGESVISSSQQGFWLRDGNNFIQVDKNIDGRIFEKITLINLNT 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--FQK 239
+ + D + K ++ Q K + D +
Sbjct: 180 PSTLDSVVYSDKAVFDGKNMVLQKSNYHQINSDQEFAAIDQKTLQQYLTEVAFDQELIKS 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ S +++ +++ F +N E + Y I+ PL L+AM ++A
Sbjct: 240 LKKEPKEFSTWQLFRRVQFL-SNNDLSADIYEVELYQRIMKPLTLIAMIILALPFVFGSL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + G+ + L + +A +P I+ L+I +L +
Sbjct: 299 RDSSLGRKIFTGVVISLFFELSSRLGGMISLRFDLNHLLSASLPTIVVFVLAIFMLRR 356
>gi|94500484|ref|ZP_01307015.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
gi|94427274|gb|EAT12253.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
Length = 354
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 130/361 (36%), Gaps = 13/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I Y + + L L +L VI L + + + ++ + P
Sbjct: 1 MRKI-DAYIRSSVINSILAVLFVLGMLDLVIALLNQLDNLRDT--FTFADALYYVVASAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++IP ITL+ +V +L SEL RA G+S +++ + S ++ + ++++
Sbjct: 58 TRLYEMIPMITLIGCLVGLGSLATHSELTAIRAAGVSTGRIMLSTIKASAIMMVLSLVMG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I E++ ++ W + N + N +
Sbjct: 118 EYIVPDLERMTTSFRTIALGREVAVTNEGKGHWHKEGNNYMRF-----AAIEPNGVLHGM 172
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDG 236
T D+ + A AI + ++ V + + + ++ + + +
Sbjct: 173 TLYEFDENKNLTKMTHAKRAIYQREHWSMENVRITHIEDVRTEYKAKSIAPFDTELTPET 232
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +++ + + K + + + F+ ++ P+ +A+ L+ S
Sbjct: 233 LKFVAQEPKDMAISTLYKYGQYLDAQG-LGGGEFKLAFWKKLLQPISTLALVLVGISFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI G + ++ ++ G + P+ A LIP+ L + +L
Sbjct: 292 GPLRSVTMGQRLFTGILVGLVYKIVVDLLGPIGLLVGIGPLLANLIPIGLCMIWGSWMLR 351
Query: 357 Q 357
+
Sbjct: 352 R 352
>gi|284929475|ref|YP_003421997.1| putative permease [cyanobacterium UCYN-A]
gi|284809919|gb|ADB95616.1| predicted permease [cyanobacterium UCYN-A]
Length = 382
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 108/356 (30%), Gaps = 16/356 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY F L L+ + L I + ++ + ++P +
Sbjct: 12 DRYLFLELLSPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLVLTVAFQILLLKIPGFLSL 71
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P L+ ++ + L+ SE++ R++G+ I++L+ P V+ ++ +V + IA
Sbjct: 72 AFPMAILLAALMAYSRLSSDSEIIALRSLGVGIYRLVIPVVIFGFIVTGCAFVVNDWIAP 131
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------QQDIFIGAKKILPENHIW 176
+ ++++ + + +
Sbjct: 132 AATHKAAIILEEAVSQKRPDFKRHNIVYPEYKTVKGKNGQESTMLTRLFHAEEYNGEEMK 191
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLNIP 231
+ I ++ I ++ Y R + L +P
Sbjct: 192 GLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQLALP 251
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLI 290
+ F + E + + S R + + +P + + L+
Sbjct: 252 RAPLDLADRRQNFTEMTISETREYLKAVQFSGNEKRIRKVKVRLQEKYAMPFVCLIFGLV 311
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
AS+ ++ + + F Y + + S G GIL P A +P I+
Sbjct: 312 GASIGVKPQ-NTNRATSFGVCVGLIFGYYILAFMSTSLGIWGILTPFLGAWLPNIV 366
>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
Length = 401
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 106/355 (29%), Gaps = 16/355 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ + L+ + + + + + + + R+P +
Sbjct: 31 DRWLTNELMGPLLFGVAAFTAVSLSVGVVFELVRRVAESGLPLLTALQVLGLRMPGFLVL 90
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P TL+ ++ + L+ SEL+ R++G+S W+++ P ++ ++L+ + T + + I
Sbjct: 91 SFPMATLMATLLAYSTLSSNSELIALRSVGVSTWRMVLPALIVAVLMSLLTFVFNDLIVP 150
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----------QDIFIGAKKILPENH 174
S + + Q + + + + + +
Sbjct: 151 SANLEATNTLNQALGKAIAAEKGSNIIYSRFSRRPSKLDESGSERYLSQLFYSRQFKDGE 210
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE----YQYGRIPIDKNSTTLNI 230
+ E I + + + + +
Sbjct: 211 MEEVTVLDFSRPSGTQILKAKTGTWNDEAGMWEFRDGQIVLVGDSETTTSAKFDRYLYPL 270
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTL 289
+ AS S E ++ + ++ R + P + + L
Sbjct: 271 DQGPLKLAALPKDAASMSVSEALRAETLLREAGDQKEARRLRVRIQEKFAFPAICLVFGL 330
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
I +S+ + + + F Y + I S G G L PV AA PV
Sbjct: 331 IGSSLGVRPNARTSRSQGFGISVLLIFSYYLMSFIFSSLGVKGTLGPVLAAWSPV 385
>gi|225012841|ref|ZP_03703274.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
gi|225002963|gb|EEG40940.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
Length = 357
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 108/356 (30%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y K Y+ T +L + + ++D+ E ++ E
Sbjct: 1 MKLIDLYIIKRYIGTFTVMILLFIPIGIMVDVAEKIDKFKEK-EVPFGAIIDYYIDFTWY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + GIS ++ L PF++ + + IF
Sbjct: 60 FANLLFPIFLFLSVIWFTSKLANNTEVIAILSSGISFFRYLRPFLLAATFIAIFAFFAGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I D ++ + + + + N + + +
Sbjct: 120 LIVPKSNLGFNDFRYKYIIKKEARNTTKVFQQINENEFIYVNSYDPIRKRATNFTLEHFE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +R K +++ +
Sbjct: 180 GNKLKFKIKSNRIRWVEDDSVFRLSNYSKRTFLGDSEHFESIARKDTLFDFEIEDLAPVN 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +F E+ + + + + IP+ +T+IA +VS F R
Sbjct: 240 YIAETLTFSELNQFIEDEKERGSMLTNSHLLVRHKRWSIPISAFILTIIAVAVS-SFKRR 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A+GI GF+ I PV AA +P++L L+ +L
Sbjct: 299 GGMGVNLAFGISLGFLFIFFDKIFGVLVSKSTFPPVVAAWLPLVLFGILAFFLLRY 354
>gi|83644757|ref|YP_433192.1| permease [Hahella chejuensis KCTC 2396]
gi|83632800|gb|ABC28767.1| predicted Permease [Hahella chejuensis KCTC 2396]
Length = 353
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 118/356 (33%), Gaps = 11/356 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L LL + L V +++ +Y + VP I
Sbjct: 4 IDRYIVATVASAMLLVLLVVLSLDLVFAFIAEMDEL--KNDYQTLQAMKYIIFTVPRRIY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L SEL + RA G+S+ +++ + ++ + + +LV +A
Sbjct: 62 DYLPLAAFIGCLVGLGVLANNSELTVIRAAGVSVVRVVWSTMKPALAVVVVGILVGEFVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+I + + S W + N + + +
Sbjct: 122 PQTERIAQTQKALEQGAAENVASSAGMWRREGN-----VFMHFNAVEPKGVLHGVSLFEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFS 241
+ + +++ A AI D L+ + + +S N+ + +
Sbjct: 177 NDERRMVRSTFAKRAIYQGDHWLLQDIERTEIKDDGSHVQTFDSLRWNVSLSPSILEVLI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + ++ + F+ ++ P+ + L+A S RS
Sbjct: 237 IKPEYLSIKGLYTYANYQEEQG-LDANSYLMAFWKKVLQPVATSVLVLVAISFIFGPLRS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V GI G + + ++ PV A L P+ + L +++L +
Sbjct: 296 VTMGFRVFCGIIIGLLFKYMQDLLGPASLVFGFNPVIATLAPICICALLGVVLLRR 351
>gi|294673581|ref|YP_003574197.1| hypothetical protein PRU_0844 [Prevotella ruminicola 23]
gi|294471872|gb|ADE81261.1| putative membrane protein [Prevotella ruminicola 23]
Length = 393
Score = 119 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 114/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY ++ T ++ ++ + + V D+NE + + A VP
Sbjct: 34 KRLDRYIIAKFIGTYIFSIILIISISIVFDVNENLAKFSTYNAPLKAIVFDYYANFVPYF 93
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +LL P+++ + L+ +
Sbjct: 94 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLLRPYMISAALIAAVNFYLGGY 153
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ +D ++K+ + + M + D
Sbjct: 154 VIPKGNQVKMDFEAKYKNKERNLSASNVQLMVQPGVIAYLQQYDDVTKTGYGFSLDKFEN 213
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D K + + + S I ++
Sbjct: 214 KKLVSHMTASVIRYDSISDSRYHWKAQSYKIRTLKGLREEIESGAVIDTLIQMEPMDLVF 273
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + + E +++ I +T+I S+S
Sbjct: 274 SKGQQETLTSTELSDYISKQVERGSVNVVQYEVEYHKRIATSFASFILTMIGVSLSSR-K 332
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + TI +F + + AA IP +L + ++
Sbjct: 333 RKGGMGMYLGIGLALSFGYILLQTISATFAINADTPALLAAWIPNLLYVIIAYF 386
>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 1063
Score = 119 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 59/347 (17%), Positives = 127/347 (36%), Gaps = 12/347 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ +Y K L + I++ + + + N S L R+P +
Sbjct: 4 KLMDKYILKEVSYPFLLGVFIITIILVGSYFFHLADLIIVK-NVPFSLVFRLLLYRLPGV 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L + LNR +E+ R G+SI++L+ P + +L+ FT L+
Sbjct: 63 MVETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTFLLNEN 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I ++I+Q + + Q + + ++
Sbjct: 123 IVPWTNHQAQNIIRQTILKDAMPDPESEVFFQGPRGR---LFYVSSYNQSSGELKNIVIY 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGF 237
+ + + A ++ ++ L + +QY + + N + + +M
Sbjct: 180 QLASEAEFPEVITAVDGLVEDNAWLLNTGIIHQYNQGGEIILESKFNQMEIELTDQMREV 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ A S E+ +++ +S I N ++ + PL A+ I S+ L
Sbjct: 240 MGTQKSTAEMSRGELGRRIELFRRSGIGVNS-LLVDYHLKLAEPLA--ALLFILISLPLS 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
S I F+ Y +++ +SFG++ +L P+ AA +P
Sbjct: 297 LSSKESSTWNFILTIIIVFLYYVVLSFSRSFGRNEVLSPLLAAWLPN 343
>gi|158337167|ref|YP_001518342.1| YjgP/YjgQ family membrane protein [Acaryochloris marina MBIC11017]
gi|158307408|gb|ABW29025.1| membrane protein, YjgP/YjgQ family, putative [Acaryochloris marina
MBIC11017]
Length = 383
Score = 119 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 123/357 (34%), Gaps = 5/357 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ + + ++ + F I + S + ++P +
Sbjct: 20 LDRFILRAFWMPWVFAFGAFTTISFSIGALFDTLRRLTEGTLSSVDALQVLVLQLPRFMV 79
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + L R +EL+ +A G S+++++ P + S+++ + T+ + I
Sbjct: 80 LALPMSMLLAPLLTYSQLARKNELIALKACGTSVYRVIRPALCFSLIVAVSTLTLNEWIV 139
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L Q + Q + Q+ + + + +
Sbjct: 140 PPATAAVHRLQAQQTVSQITAIPRQNIVHQTYHHQRLTQLFHARAFDGEALHQLTILQFQ 199
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKFS 241
D+ I + + + L + Y + + ++ +
Sbjct: 200 DRHLHHIWLAKQAIWDSTHQQWILSQGTRYTIDPVSGLYQQVVPFKRHPFHQVSPQELAE 259
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S +E + +S R + +++ L+ P + V TL+ +S+ + +
Sbjct: 260 VAHQPISLHETQALIQQIKQSGNLPTLQRLQVRWHALMAFPWIGVGFTLMGSSLGCQST- 318
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S Q + F YT I ++ G +GI A +P+++ +++ +L
Sbjct: 319 SKQGSLGFGLSSLLIFGYYTFSFICQTLGDAGIWSASIAGWLPIVVLLTIGSALLHH 375
>gi|146297810|ref|YP_001192401.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
gi|146152228|gb|ABQ03082.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
Length = 362
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 120/359 (33%), Gaps = 6/359 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ +Y K YL T +L + + VID++E N+M E ++ A+
Sbjct: 1 MLTIIDKYILKRYLATFSVMILLFIPIGIVIDVSEKVNKMLENK-IPFTQIAIYYYNFTV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + I L +E++ + GIS + L P+++G+ ++ +F +L+
Sbjct: 60 YFANSLFPIFLFLSVIWFTSKLANNTEIIAILSSGISFTRFLRPYIIGASIVSVFVLLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + + + + KQ FI E+ +FT
Sbjct: 120 FFIVPAASEGFNNFRYTYLKGNGKQLMRGENTNVFRQINDHDFIFVNSFNEESKTAFNFT 179
Query: 181 SITIDKKNKIIH----RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+K+ R D K + + ++
Sbjct: 180 LEHFEKEKLTYKITASRIKWDPKKKIYTLYDYTKRTVGDLNDVIEKAPEKNVGFKFELAD 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + ++I + K + Y +P+ +T+IA +VS
Sbjct: 240 LTPVVYIAETLTLGKLIDFIEKERKRGSGNINTYLVVLYKKYSVPVSAFILTIIAVAVS- 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A GI F I + + P+ A P I+ L++ +L
Sbjct: 299 SMKRRGGMGMNLAIGIAIAFSFVFFDKIFGTLAEKSTFSPLLAVWFPNIVFGILAVYLL 357
>gi|332286756|ref|YP_004418667.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
gi|330430709|gb|AEC22043.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
Length = 392
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/349 (16%), Positives = 110/349 (31%), Gaps = 20/349 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K ++T+ L+ + L L E + + +++ + A +P + +
Sbjct: 6 RYLAKEIYRSTIVVLMALIGLFTFFALIEELDNLSNQ--FTLLNLFYMQALALPTTLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L L+ I +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLTMLWIVTIPLVFGAFLLSEIITPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + + + W + S+ Q I L + D T
Sbjct: 124 AEIKSSEASLTLLGKAGGGRLNSGYWFKESDEQGGTRIINIGQLKSSGNVADITLYEFKN 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTLN 229
++ A + + L V + + TL
Sbjct: 184 GQELATFSTAKQGQFADGTLVLGDVKQTSINADSLSTLANAVQPDTPLTRLETLPERTLK 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + +N R + + P L+ M
Sbjct: 244 TSLTPERLIARILTPERMSIRVLLDYIDYLE-NNNLQTDRQIVALWRKMAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
IAA +S +R V GI G + + + + G P
Sbjct: 303 IAAPISFMQTRRGGVGSKVFVGILLGVGFFMLNQLALNVGMLNQWAPWV 351
>gi|170079022|ref|YP_001735660.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
gi|169886691|gb|ACB00405.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
Length = 373
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 122/361 (33%), Gaps = 9/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L L + + A ++P I
Sbjct: 10 VLDRYIIGELNLAFAFGLGLFSALGIAVGSLFDLLAQVRESRLLFDVALKVMALKMPEFI 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++V+ L+ SE++ R++GIS+++L+ P ++ SIL T + + +
Sbjct: 70 GFALPMAVLLATLIVYSRLSGDSEIIALRSLGISVYRLVLPALIFSILATAITFVFKDQV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++Q D + + +D T I
Sbjct: 130 IPLANAQATQTLEQAFLQKQAPFRDEKIIYPEYGEDNVLKRLFYAAEFDGQQMKDLTIID 189
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ DA + ++ + + Y +N + + +
Sbjct: 190 RSNGSLNQIVTADAAGWDLARNQWNFQNGIIYFIDIDGSYRNVLRFDRHQIQLSNELRVD 249
Query: 243 ----QFASRSFYEIIKKMSF---SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S ++ + M + + +F I P + +A+ ++ A++
Sbjct: 250 EELPKHEDMSLAQLQQYMQTVAADPDRDEAWLRKLRVRFQEKISFPFICLALGVVGAAIG 309
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L S + F Y + ++ S G +G L P+ AA +P ++ ++++ ++
Sbjct: 310 LRPQ-SAGKATGFGLCVGLIFGYYFLAFMISSVGVAGYLHPILAAWLPNLIVMAIASGLV 368
Query: 356 L 356
L
Sbjct: 369 L 369
>gi|166364704|ref|YP_001656977.1| permease [Microcystis aeruginosa NIES-843]
gi|166087077|dbj|BAG01785.1| permease [Microcystis aeruginosa NIES-843]
Length = 387
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 116/361 (32%), Gaps = 17/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY L L+ + L I N ++ + +VP +
Sbjct: 16 LIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVDANLPLASALEILLLKVPEFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++ + L+ SE V ++ G+++++L P S+++ + T L+ +
Sbjct: 76 TYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYV 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---------PQQDIFIGAKKILPENH 174
+ +++ Q + + + + I + +
Sbjct: 136 VPNANYRATEILVQKINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFDGEK 195
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY------GRIPIDKNSTTL 228
+ + ++ I D+ ++ + Y+ R I + +
Sbjct: 196 MKTVTVIRWLKQELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFKAEKI 255
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAM 287
+ F + S + + I+ + S R + + I P + +
Sbjct: 256 ALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDDKRVRFFQVRIQQKIAFPFVCIVF 315
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
I ++ R ++ + F+ Y + ++ S G + L P AA +P
Sbjct: 316 ATIGCALGSLPQRISR-GTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLPNFFG 374
Query: 348 I 348
Sbjct: 375 F 375
>gi|315125733|ref|YP_004067736.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
gi|315014247|gb|ADT67585.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
Length = 371
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 14/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+++RY LK+ + L M + I E + + A ++P
Sbjct: 1 MLLIFRYLTTEVLKSQVAVFLTLMTIFLSQKFVVILGDASE-GSIPAKLVFAMIALKLPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + I+ + + SE+ + +A G+S W ++ ++ S++L + ++
Sbjct: 60 LASLILPLSLFLGIILAYSRIYADSEMTVLKACGVSEWYVVRITLISSVILALLAAVLTL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + L +Q K + + Q N + +FI + +
Sbjct: 120 YVAPWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQ 179
Query: 182 ITIDKKNKIIHRKDADL-----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ +K + A+ A ++ L Y+ N T +
Sbjct: 180 LPDSEKGDLARLVYAEQGVVIEAQSGEQQLVLTDGKRYETDGEAPSLNLTEFDGYSVQIR 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ Q + MS + A Q+ + + IPL + +TL+A +S+
Sbjct: 240 EQEIEHQRRKLEAVPTRELMSI-------NTPEAIAQWQWRLAIPLSIPLLTLLAVPLSV 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +V I + ++ K + G + P + + + L+++
Sbjct: 293 VNPRQGKFAKLVP-AISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGSLLII 351
Query: 357 Q 357
+
Sbjct: 352 R 352
>gi|256829582|ref|YP_003158310.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
gi|256578758|gb|ACU89894.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 119 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 122/359 (33%), Gaps = 9/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L L + + IDL + + E +S R P
Sbjct: 1 MNLLTRYILRQNLFLLLLVCGIGLGIYVFIDLFDRLDNFLE-AGVGLSSVGAYFLYRTPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ QI P + L+ +V + R+ EL+ A +S + + ++ L + +
Sbjct: 60 ILAQIFPAVFLIALMVQMGLMLRSRELLALEACSVSPGAVAKSVIWYALALCVAQLFFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ SG + + + + +K + + + + +G+ +
Sbjct: 120 ALGVSGHRAAERIWNEEVRDRQIEKRQLSD-LWFREGNRIVHMGSVTPAAGRGLELTVHV 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ D I A + L V + + L +
Sbjct: 179 LEDDDAGSIREIIRAQEFTSAPEGWLLSGVTRTLPATFEVQKAAQMELDLRTDVSSFLIV 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ ++ S + R +T ++ + ++ M LIA +V
Sbjct: 239 DPKTRLESLPLLQLGAEIKRLRDSGS-NIERLQTAWHMKLAYAGSVLVMALIALAVV--- 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S +I+ G+ + F Y + + S G+ G++ PV AA +++ LL+
Sbjct: 295 SFFGSLFVIIPLGLVATFCYYGLFVLCASAGEKGLVPPVLAAWAANAFFTAVAGGWLLR 353
>gi|288926740|ref|ZP_06420651.1| membrane protein [Prevotella buccae D17]
gi|288336470|gb|EFC74845.1| membrane protein [Prevotella buccae D17]
Length = 367
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 4/355 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K ++ T + + + + V D NE ++ + + A +P
Sbjct: 8 KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ +L+ T +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G I D +++N +D + I +
Sbjct: 128 EIPHGTVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFED 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D +++ + + + S I ++
Sbjct: 188 KKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLVY 247
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ + +S + + + +++ I +T+I S+S
Sbjct: 248 SKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSLSSR-K 306
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G+ F + T+ +F + P+ AA P ++ ++ +
Sbjct: 307 RKGGMGLYLGLGLALSFGYIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFL 361
>gi|119471263|ref|ZP_01613766.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
gi|119445729|gb|EAW27012.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
Length = 370
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 127/356 (35%), Gaps = 8/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVVILGDASE-GSIPAQLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S L + + +
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSAGLALLAGALTMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + + N + +FI + + +
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIENGGKELNKVFVAQLP 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ A+ ++ + + + + + F +S Q
Sbjct: 181 NSDNDELARLVYAEQGVVIE----AQNGEQQLVLTDGKRYETDATTPALNLTEFDGYSVQ 236
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +K+ + + + + Q+ + I IPL + +TL+A +S+ R
Sbjct: 237 IREQEIEHQRRKLEAVPTNQLLAINTPESIAQWQWRIAIPLSIPLLTLLAVPLSVVNPRQ 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +V I + ++ K + G + P + + + L++++
Sbjct: 297 GKFAKLVP-AISLYLGYFILLNAAKFAIEDGKIPPSIGLWWIHLSALFIGGLLIIK 351
>gi|187929752|ref|YP_001900239.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|309781532|ref|ZP_07676268.1| membrane protein [Ralstonia sp. 5_7_47FAA]
gi|187726642|gb|ACD27807.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|308919945|gb|EFP65606.1| membrane protein [Ralstonia sp. 5_7_47FAA]
Length = 397
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/397 (12%), Positives = 109/397 (27%), Gaps = 42/397 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + +YF + ++ L + L D+ + Y+ + P
Sbjct: 3 MP-VYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGR--YTTLVAFFHVMLQAP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++IP L+ I VF + SE I R G+ + L ++ L + T L
Sbjct: 60 TRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYLFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP---------------------- 158
I E+ + + W++ P
Sbjct: 120 EFIGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKPDGTGGEVTRFVNVGALQPD 179
Query: 159 ----QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL------ 208
I+ + D + ++ + +
Sbjct: 180 QSIKGLRIYEFDSDYRLSSIRVADQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTV 239
Query: 209 ------KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ + + + + ++ + +
Sbjct: 240 QAVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRD- 298
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N R E + +V P ++ M +A + +R+ + V GI G +
Sbjct: 299 NKQDTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQLVN 358
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ G + A++P L ++L+++ L E
Sbjct: 359 NLFSHVGLLNTWPAIFTAIVPGALYLALALVSLRWVE 395
>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
hutchinsonii ATCC 33406]
Length = 359
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 127/357 (35%), Gaps = 2/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T + +L M+++ VID+ E + +P
Sbjct: 1 MKKLDLYIIKKFLVTYFFVVLMFMLVITVIDITEKMEDFMKHKLSIWFILVEYYFAFIPY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P + I V NL +E++ + G+S+ +++ P+++GSIL+ +
Sbjct: 61 MANLLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSG 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G K +D +++ + + + I +I +
Sbjct: 121 WLIPHGNKKRVDFEKKYIKSTFFYEGRNVHMKTAPTTYVYIESYNSEINVGYQFTLETII 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQKF 240
R + + + + + G+ + K + I F+
Sbjct: 181 DNRLVSKLKAARMNWNDSTKKWRMEEYFIRRFTEDGKEEVFKGRGLDTALTITPKDFEDT 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + E+ +++ + T+ Y P ++ +TLI S SR
Sbjct: 241 YMLFETYDMGELNNQIALLEARGSENISTYITEKYQRYTYPFSVIILTLIGVIASSRKSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A+G F+ + +S G + P+ A+ IP I+ I + +++ +
Sbjct: 301 EG-AGLTIAFGFLLAFVYIIFMITSRSLANVGGIGPLFASWIPNIVFIVIGLIMYRR 356
>gi|317477038|ref|ZP_07936280.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
1_2_48FAA]
gi|316906831|gb|EFV28543.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
1_2_48FAA]
Length = 393
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 36 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPYF 95
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 96 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGSY 155
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + I S I D
Sbjct: 156 VIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 215
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ VK + E R I K + ++ F
Sbjct: 216 KQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRESIVKGEKMDTILFMEPADFLIMK 275
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + ++ + + E +++ I + +TLI S+S + ++
Sbjct: 276 NQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTKG 335
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + P A IP +L ++ +
Sbjct: 336 GMGLHLGIG-LGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIAFYL 387
>gi|157413956|ref|YP_001484822.1| putative permease [Prochlorococcus marinus str. MIT 9215]
gi|157388531|gb|ABV51236.1| Permease [Prochlorococcus marinus str. MIT 9215]
Length = 403
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/373 (12%), Positives = 115/373 (30%), Gaps = 19/373 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + ++ + ++ + + + + + +P +
Sbjct: 27 LLDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKVVEYGLPLFLALKVLFFSLPSFL 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ +++GI +++ P + SI + T + +
Sbjct: 87 VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN--------------PQQDIFIGAKKI 169
K+ ++ + ++ M Q I +
Sbjct: 147 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNYSQLTHIFYAQW 206
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNS 225
+ + + I + D+ N K I
Sbjct: 207 YKNKLMGNVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITPSGQTTNIQFKE 266
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLML 284
T K + + + I+ K+ R + + +P
Sbjct: 267 YTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFAC 326
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +S+ + + + + + Y + I S G G+L P+ AA +PV
Sbjct: 327 LVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSLGVKGLLPPIFAAWLPV 386
Query: 345 ILTISLSILILLQ 357
++++ I +L +
Sbjct: 387 LISLGGGIYLLRK 399
>gi|315608793|ref|ZP_07883769.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315249487|gb|EFU29500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 416
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 4/355 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K ++ T + + + + V D NE ++ + + A +P
Sbjct: 57 KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 116
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ +L+ T +
Sbjct: 117 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 176
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G I D +++N +D + I +
Sbjct: 177 EIPHGTVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFED 236
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D +++ + + + S I ++
Sbjct: 237 KKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLVY 296
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ + +S + + + +++ I +T+I S+S
Sbjct: 297 SKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSLSSR-K 355
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G+ F + T+ +F + P+ AA P ++ ++ +
Sbjct: 356 RKGGMGLYLGLGLALSFGYIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFL 410
>gi|241663807|ref|YP_002982167.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
gi|240865834|gb|ACS63495.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
Length = 397
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/397 (13%), Positives = 112/397 (28%), Gaps = 42/397 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + +YF + ++ L + L D+ + Y+ + P
Sbjct: 3 MP-VYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGR--YTTLVAFFHVMLQAP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++IP L+ I VF + SE I R G+ + L ++ L + T +
Sbjct: 60 TRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPE 172
I E+ + + W++ P + F+ + P+
Sbjct: 120 EFIGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKADGTGGEVTRFVNVGALQPD 179
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------------ 214
I R + +L V E
Sbjct: 180 QSIKGLRIYEFDSDYRLSSIRVAEQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTV 239
Query: 215 ------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ + + + ++ + +
Sbjct: 240 QAVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRD- 298
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N R E + +V P ++ M +A + +R+ + V GI G +
Sbjct: 299 NKQDTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQLVN 358
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ G + A++P L ++L+++ L E
Sbjct: 359 NLFSHVGLLNTWPAIFTAIVPGALYLALALISLRWVE 395
>gi|317503389|ref|ZP_07961433.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315665484|gb|EFV05107.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 385
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 113/354 (31%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K ++ T +Y + + + VID+NE + E + +P
Sbjct: 26 KRLDWYIIKKFIGTYIYSIALIISISIVIDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ IL+ + + +
Sbjct: 86 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCILISVVSFYLSGY 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ I + +K+ +D + I D
Sbjct: 146 VIPHSNVIRQNFESLYKNKKKTTAADNVMLNVGKGTIAYIQHYDNNTKRGYGFSLDKFQD 205
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D + ++ + I ++ +
Sbjct: 206 KKLVSHMTAMEIQYDTISDSKYHWTAQNYKIRKFNGYREQIENGAKRDTTILMEPNDLVY 265
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + + +++ I +T+I S+S +
Sbjct: 266 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSLSAK-K 324
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + L P+ AA IP I+ ++
Sbjct: 325 RKGGMGMYLGIGLALSFGYIMLQTVSSTFAINANLPPIIAAWIPNIIFAIVAYF 378
>gi|281422528|ref|ZP_06253527.1| putative membrane protein [Prevotella copri DSM 18205]
gi|281403352|gb|EFB34032.1| putative membrane protein [Prevotella copri DSM 18205]
Length = 413
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 107/354 (30%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L + + + + V D NE ++ E + + A VP
Sbjct: 54 KKLDWYIIKKFLGYYFFSIALIISIAIVFDFNENLSKFTEHHAPARAIIFDYYANFVPYF 113
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
V I+ L SE++ A G+S +LL P+++ +LL + +
Sbjct: 114 ANLFSALFVFVAVILFTTKLASNSEIIAILASGVSFKRLLRPYMITCVLLSALSFGLSAY 173
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K+ ++ + + + D
Sbjct: 174 VIPHGTVIRQNFETMYKNKKKNTSAENVQLQVDKGVIAYMQHYDNSMKRGYGFCLDKFQD 233
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D KL + + S I ++
Sbjct: 234 KKLVSHLTAMDIQYDTISDSKYHWKLSNWKIRKLQGMKEHITSGAQKDTIIMMEPTDLVY 293
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + E +++ I +T+I S+S
Sbjct: 294 SKGQQETFTSPELRDYISKQINRGSGNVVQYEVEYHKRIASSFASFILTIIGVSLSAR-K 352
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + G+ F + T+ +F V AA +P L ++
Sbjct: 353 RKGGMGAALGVGLALSFGYIMLQTVSATFAIQANFPSVLAAWLPNFLFAIVAYF 406
>gi|123969132|ref|YP_001009990.1| putative permease [Prochlorococcus marinus str. AS9601]
gi|123199242|gb|ABM70883.1| possible permease [Prochlorococcus marinus str. AS9601]
Length = 401
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/373 (11%), Positives = 114/373 (30%), Gaps = 19/373 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + L+ + ++ + + + + + +P +
Sbjct: 25 LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ +++GI ++++P + SI + T + +
Sbjct: 85 VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144
Query: 124 ATSGEKIGIDL--------------IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
K+ + + + + N + I +
Sbjct: 145 VPKSNKLAETTLRAGIGSSFSEEKGKENIMFSRYGSRINSETKKPTKNNSKLTHIFYSQW 204
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNS 225
+ + + I + ++ + I
Sbjct: 205 YENKIMKNVTVLDFSREDFQQILKANSGRFDKKSSSWIFSNGSIVSIDSGGQTTNIQFKE 264
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLML 284
K + + + I+ K+ R + + +P
Sbjct: 265 YKYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNLKEVRRMKVRIQEKFTLPFAC 324
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +S+ + + + + + Y + I SFG GIL P+ AA +PV
Sbjct: 325 LVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPPIFAAWLPV 384
Query: 345 ILTISLSILILLQ 357
++++ I +L +
Sbjct: 385 LISLGGGIYLLRK 397
>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-3-3Ab]
Length = 376
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/354 (17%), Positives = 126/354 (35%), Gaps = 14/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F L L + G +L+ L + ++ E + L +P ++
Sbjct: 10 LLERYLFGQMLTPVLAGIAGGTLLLLAGRLFTLAERLVE-GSVPPLTVLRLLILDLPEMV 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ L+ SE+ RA GI ++ P ++ +L+ + + N +
Sbjct: 69 LLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFWISNVL 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + QQ + + + I + +T
Sbjct: 129 LPASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNTMQDVT 188
Query: 184 IDKKNKIIHRKDA-------DLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIP 231
I + + + K A+ L + V ++YG + L +
Sbjct: 189 ILQVDPLPGGKYQLAEVTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPFDRKPLEVS 248
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + S E+ +++S +SN + T+F+ +PL LI+
Sbjct: 249 QDLAALMQPPVPPNELSLPELAERISRLARSN-LNTQPLRTEFHMRFSLPLASFFAVLIS 307
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ +R V +GI F Y ++++ +S G++G L P AAA I
Sbjct: 308 LPLGSTTARRVGRYGGVVFGILLVFAYYVVLSVSRSLGEAGALPPWAAAWSFNI 361
>gi|157374154|ref|YP_001472754.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
gi|157316528|gb|ABV35626.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
Length = 370
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 113/357 (31%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + L + + + + + S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLFVLLAIFISQHFVRVLANASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + SE+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAESEMVVLHGVGVSEWYITRVTLLLAVINMLFTGYLSVFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAKKILPENHIWED 178
E+ +++ + + N + + I + D
Sbjct: 121 TPWAEEKQNQVLESAQSEAGLAAITQGRFQTSPNGRAVLFVERIDRDNQLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +++L V+YQ +D Q
Sbjct: 181 PEDESGQSNIVMAKGGSVVEDGSGGQRLQLNDGVQYQGTPKKVDFQVVEFGGYQMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S I M+ F++ + IPL + MTLIA ++
Sbjct: 241 EVDERRRKLSALPIKDLMALDGPEATAE-------FHWRLAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ + + G++ + L IL+L
Sbjct: 294 VRQGKFAK-MFPAILLYLGYFGLMIAGRKALEDGVVPAYLGMWWIHASALFLGILLL 349
>gi|87198520|ref|YP_495777.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
gi|87134201|gb|ABD24943.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
Length = 366
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 124/359 (34%), Gaps = 4/359 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K + + LL ++++ ++DL + P + R+P ++
Sbjct: 10 TLAIYIAKMFAVRIVAVLLMLVLVLQMLDLLSESGAVLAAPGNGQGELLTYVSLRMPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P + + + T I
Sbjct: 70 SRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVAAATSVVTFAFNERI 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
T Q +S + + + +F + + +
Sbjct: 130 VTRSTSTLKAW-QDVDYGPIPVESATKSNVWLQDGPNILFARSVAGQGKAMHMTGVSWYR 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDGFQKFS 241
D + A A N + ++ V + S ++
Sbjct: 189 RDPTGMVTEIVTAPSASYANPGWRFREPVMFDVQSARKTALAASEVFAKSVEPVQVVISR 248
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ ++ + F + +++ I PL + M L+ A + +RS
Sbjct: 249 VDADAESLTQLTGSLAAIRDAG-FRTTELDGKWWHKISGPLSALLMPLLGAVAAFGLARS 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G P AA P +L + + +L++ E+
Sbjct: 308 GHLFVRAVIGMALGFAYFVFDNAALAMGNFGAYPPFLAAWAPFVLFLLIGETVLIRTEE 366
>gi|160872818|ref|ZP_02062950.1| permease [Rickettsiella grylli]
gi|159121617|gb|EDP46955.1| permease [Rickettsiella grylli]
Length = 355
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 119/357 (33%), Gaps = 9/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + + TTL L +IL +I L +G +Y+++ +P
Sbjct: 1 MNIIDRYLGRTIIHTTLSVLGILLILFALIQLISETRDIG-TGHYTLTSAFSYVLLTLPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P L+ +I+ L++ SEL+I A G+S++Q+ + ++ + TVL+
Sbjct: 60 QFYNFFPIAILLGSILGLNVLSKHSELMILHANGVSLYQMAWSLIKATLWMVFITVLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ G + + + +
Sbjct: 120 GLAPHAARLAESHKFFLTTKGQTLTTQQGSVWIRDGHNFIYI----QSILDPTHLNHVNC 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
D N ++ A + + K
Sbjct: 176 YQFDDDNNLLKASFAKQVNYKAKAWHAYDIATSLITLNKVKKKFIAHEIWPFSFSPKLLT 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ + + + N + F+ IV P+ L M +A S +
Sbjct: 236 ISIIKPEEMSLRQLHEYIHYRK-KNHLNTSPYSFAFWKRIVEPISLWVMMCLAIPFSFKH 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ + GI GF Y + + F P AAL+P+ + + ++IL++
Sbjct: 295 LRTLATSLKTLAGITIGFSFYLLNNFLGPFAIVYQWPPFLAALLPLFIFMLIAILLM 351
>gi|88703587|ref|ZP_01101303.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
gi|88702301|gb|EAQ99404.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
Length = 352
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 128/360 (35%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + + L LL + + + + + +Y + +P
Sbjct: 1 MRK-LNRYVARTVWLSILLVLLVIVGIDGLSAFIDESD--SRSASYGFAEIGRYVMLTMP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + IPF L+ ++ L TSELV+ RA GIS +L + ++++ +F L+
Sbjct: 58 RRVYEFIPFAALIGALIGLGQLASTSELVVMRAAGISNGRLAWMVLKQALVIAVFGFLLG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E+ + G + ++ W + + + ++ T
Sbjct: 118 EYIAPKAEQQAQSGRAIARYAGRQVDTEQGIWRRDGA-----VFFHVQAIAPDNEVFGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
+ ++ + AD + +L+ V ++ R + K S L I
Sbjct: 173 AYEFEEDGWMQRALFADSGRYDGEGWRLRDVQSSEFSRDRVRKASAPALFLPSNITPKIL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +++ +F E + ++ P + A+ LIA S
Sbjct: 233 SLENVAPSQLTLVDLVDYAAFLRSQGE-DVADFELATWRKLMQPAAVAALVLIAISFVFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + ++ P+ AAL PV+ + + + +L +
Sbjct: 292 PLRDGTLGFRIFAGVMVGILFQLSQDLLGPASLVFGFPPLYAALAPVLSCVLVGLYLLRK 351
>gi|317969817|ref|ZP_07971207.1| permease [Synechococcus sp. CB0205]
Length = 400
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 102/355 (28%), Gaps = 17/355 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ F L L+ + + + + + + + A R+P +
Sbjct: 27 LLDRWLFAEMLGPLLFGIAAFTAVSLSVGVVFELVRKVAEAGLPLWAAGKVLALRMPGFL 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ F L+ +SEL R+IG+ W+++ P +V + L+ + T + + I
Sbjct: 87 VLSFPMATLMATLLAFSRLSGSSELTALRSIGVKTWRMVVPALVLAALMTLLTFVFNDVI 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----------------NPQQDIFIGAK 167
S +++ ++
Sbjct: 147 VPSANYSASNVLDSALGRALSAQTGKNVVYSRFGRITPKEPGGNAGEGLTQLFYAKEFKN 206
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ + + D + A+ ++ + + S
Sbjct: 207 GEMQGVTLLDFSREDQQQVLTANTAVWDENRAMWEFRNGRILNIDAANNFTTSANYTSYY 266
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVA 286
A + + + + ++ R + P + +
Sbjct: 267 YPFTRAPQDVGMLPSDAAQMTVAQARRAEALLVQAGDQKEARRLRVRIQEKFAFPAICLV 326
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
LI +S+ + + + F Y + I S G G L P AA
Sbjct: 327 FGLIGSSLGVRPNSRTSRSQGFGISVLLIFGYYLMSFIFSSLGIKGTLYPFFAAW 381
>gi|294788100|ref|ZP_06753344.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
gi|294484393|gb|EFG32076.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
Length = 355
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 134/361 (37%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + Y LL + L IDL +G+ NY+ ++P
Sbjct: 1 MKLLTKYLIKRLTVMSCYALLAVLALYSFIDLLSEIGNVGK-GNYTGWTAFKYIIMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P TL+ ++ L+ +SEL + + G+S ++ + S + + T+L+
Sbjct: 60 RAYQLMPLATLIGGLLALSQLSSSSELAVIKTSGLSTADIIRIILKFSAIFALATILLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + K++ S W++ +I + ++ +
Sbjct: 120 WLAPELGRRADAMKTTAKESSITA-SVTGLWLRQGENIVNI-----AAMLPDNTLTNIRI 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQ 238
+ + ++ A+ A +++ K L+ Q I +
Sbjct: 174 WRYNPQFELTEAIIAEKAQVHDGKWVLQNAKISQLTNKHINIQHIKQMNWQTNINQNLLN 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF + + + + N + ++ +V P+ + M+L+A + +
Sbjct: 234 VLVVKPEQMSFSALTRYIKYLK-KNQQQTSAYDVVWWNKLVYPIATMVMSLVALAFTPNS 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + + GI G + + + + + +A++P ++ ++ ++
Sbjct: 293 ARHSNMGLKLFSGICLGLLFFFTGRLFGFTTQLYGVPAFFSAILPTATFALWAVYLIHKQ 352
Query: 359 E 359
E
Sbjct: 353 E 353
>gi|239993538|ref|ZP_04714062.1| permease YjgP/YjgQ [Alteromonas macleodii ATCC 27126]
Length = 366
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/356 (13%), Positives = 117/356 (32%), Gaps = 9/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI--WEDFTS 181
A + L ++ ++ + Q N + IF+ + +
Sbjct: 121 APLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDNNDKLQRVFLSQNQT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++++ + ++A + L QY +K +
Sbjct: 181 DDSEGDVRVVYAQTGEVANNPDGTRNLVLKEGVQYEGKQSEKAFRKVEFDEYQIQIADKP 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R + N+ + A + + I IPL + + LIA +S R
Sbjct: 241 ADETRRKVSVLPT-----NELWEDDSIEARAELQWRIAIPLSIPFLVLIAVPLSAVDPRQ 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I + ++ + + G + P + + + ++++++
Sbjct: 296 GRFGK-MFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGVMLIVR 350
>gi|127511873|ref|YP_001093070.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
gi|126637168|gb|ABO22811.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
Length = 370
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P +
Sbjct: 2 IVFRYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + SE+V+ ++G+S W + ++ ++ +FT ++ +
Sbjct: 61 VLVVPLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
E+ +++ + + N + +F+ + D
Sbjct: 121 TPWAEETQNRVLENAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++KL ++YQ + +D Q
Sbjct: 181 PEDGASQSNIVVAQGGSVIEDESGEQRLKLNDGIQYQSKQNQLDYQVVQFAGYEMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ S I + + + F++ + IPL + MTLIA ++
Sbjct: 241 EVDQRRRKLSALPIDQLLDTEGPEAVAE-------FHWRLAIPLAIPFMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ + + ++ + L +L+L
Sbjct: 294 VRQGKFAK-MFPAILLYLGYFGLMIAGRKALEDEVIPAYLGMWWIHASALFLGMLLL 349
>gi|270340118|ref|ZP_06007105.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332630|gb|EFA43416.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 395
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 113/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 36 KRIDWYIIKKFIGTYIFSILLIISISIVFDVNENLAKFSQYHAPLEAIVFDYYANFVPYF 95
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I L SE++ A G+S +LL P+++ +LL + +
Sbjct: 96 ANLFSALFVFISVIFFTSKLAGNSEIIAMLATGMSFKRLLRPYMITCVLLAGLSYYLSAY 155
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +K+ ++ + I + D
Sbjct: 156 VIPHGTVIRQNFETMYKNKHKNTSAENVQLQVGRGVIAYIQHYDNTMKKGYGFCLDKFEN 215
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQK 239
+ D KL + + S I ++
Sbjct: 216 KKLVSHLTAMEVQYDTISDSKYHWKLTNWKIRRLKGLREHITSGAEKDSVIMMEPTDLVY 275
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + + +++ I +T+I AS+S
Sbjct: 276 SKGQQETFTSPELKDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIGASLSSR-K 334
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + + G+ F + T+ +F + P+ AA IP I+ ++
Sbjct: 335 RKGGMGMYLGIGLALSFTYIMMQTVSATFAINAYFPPMLAAWIPNIVFAVIAF 387
>gi|207721412|ref|YP_002251853.1| permease protein [Ralstonia solanacearum MolK2]
gi|206586571|emb|CAQ17158.1| permease protein [Ralstonia solanacearum MolK2]
Length = 401
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/402 (12%), Positives = 112/402 (27%), Gaps = 46/402 (11%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M +L +YF + ++ L + L D+ + Y+
Sbjct: 1 MMKMLKMPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGR--YTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + + W++ P + F+
Sbjct: 119 TYVFGEFIGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------- 214
+ P+ I R + +L V +
Sbjct: 179 SLQPDQTIRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTQTHFIEFPRKAGAAA 238
Query: 215 -----------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + + ++ + +
Sbjct: 239 PQDNRQAVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIR 298
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
N R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 299 HLRD-NKQDTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLS 357
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 FQLVNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|83746688|ref|ZP_00943737.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|207742607|ref|YP_002258999.1| permease protein [Ralstonia solanacearum IPO1609]
gi|83726641|gb|EAP73770.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|206594001|emb|CAQ60928.1| permease protein [Ralstonia solanacearum IPO1609]
Length = 401
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/402 (12%), Positives = 112/402 (27%), Gaps = 46/402 (11%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M +L +YF + ++ L + L D+ + Y+
Sbjct: 1 MMKMLKMPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGR--YTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + + W++ P + F+
Sbjct: 119 TYVFGEFIGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------- 214
+ P+ I R + +L V E
Sbjct: 179 SLQPDQTIRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFIEFPRKAGAAA 238
Query: 215 -----------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + + ++ + +
Sbjct: 239 PQDNRQAVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIR 298
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
N R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 299 HLRD-NKQDTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLS 357
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 FQLVNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|307155108|ref|YP_003890492.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
gi|306985336|gb|ADN17217.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
Length = 405
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/369 (14%), Positives = 111/369 (30%), Gaps = 16/369 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + + + I + + I + RVP
Sbjct: 37 DRYIATQLIPPYILSVGLFTSMGVAIANLSDLSNKVLEYDLPIVDALKILLYRVPEFFSY 96
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++ T + +
Sbjct: 97 ALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATIPAVMLSLIVTGLTFIFNECVVP 156
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ + + + + + L E F +
Sbjct: 157 ETNYRATGILVKVLHEERHFWQNKDIFYPNYEQIKLPNGQTLRQLKSLFYAEKFDGQKMQ 216
Query: 186 KKNKIIH---------RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-- 234
I D + Y K + T
Sbjct: 217 SLTIINWLGERLNEIVVSDTAQWNSDQNIWDFFDGTVYLIDGNAAYKEAVTFKHQQFPLP 276
Query: 235 ---DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
F + ++ ++ + +S N R E + I P + + ++
Sbjct: 277 KEAFEFASQGRSPYEMNLFQAVQYKNLLQESGDTKNVRFFEVRIQQKIAFPFICLVFGVM 336
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A++ + + ++ + + F Y + SFG G+L P AA +P + +
Sbjct: 337 GAAIGAKPQQMSR-GTSLGLTVGIVFAYYMVNFFTGSFGMIGLLSPSMAAWLPNFFGVGI 395
Query: 351 SILILLQKE 359
IL + E
Sbjct: 396 GGWILKKLE 404
>gi|149927924|ref|ZP_01916174.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
gi|149823363|gb|EDM82596.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
Length = 401
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/374 (14%), Positives = 120/374 (32%), Gaps = 26/374 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF K + ++ + L DL +++ LP S V +P + +I
Sbjct: 14 YFRSELYKAISFVMVAFVGLFAFFDLIAEVDRLS-LPGTSWFYYFVAVLLGLPARVYEIA 72
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ +I L +SEL RA G+S +L V + + + TVL +A
Sbjct: 73 PIAALIGSIYALVQLAASSELTAMRAAGLSTTSMLKMLVRIAAGVVVITVLFGEAVAPLA 132
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E+ + + + + WM+ + D + + ++ + +
Sbjct: 133 ERAAVPMRAKALGYEVDRDFRSGYWMRDTYSAPDAESRVRFVNFDSFNKDGELLKLEYYE 192
Query: 188 NKI------IHRKDADLAIIYNDKVKLKKVVEYQYGRI------------------PIDK 223
R ++ + +L+ V+ +Y
Sbjct: 193 LDPESRIRAWVRAESAKFDPDSGDWELRNVLVQRYFDEAVSNANAARAGLTIQASEFESL 252
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + S +++ F SN+ + F I+ P
Sbjct: 253 ETMRWTSNLSPELLTGLFVRPDRMSAWQLYNYSKFL-SSNLQATDNIDLAFAKKIMYPFA 311
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
++ M +I+ + RS + V G+ G + + + P +A +P
Sbjct: 312 ILIMMMISLPFAYLHFRSGSVSVKVFAGVMIGVGFHLVNNLFSHLSMVASFPPFVSAALP 371
Query: 344 VILTISLSILILLQ 357
+L + + L
Sbjct: 372 SLLGFVVGMGALWW 385
>gi|318041350|ref|ZP_07973306.1| permease [Synechococcus sp. CB0101]
Length = 388
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/360 (12%), Positives = 103/360 (28%), Gaps = 19/360 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ L L+ + + + + + + R+P +
Sbjct: 15 DRWLSSELLGPLLFGVAAFTAVSLSVGVVFELVRKVAEAGLPPLVAMQVLGLRLPGFLVL 74
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P TL+ ++ F L+ +SEL R+IG+ W+++ P +V + L+ + T + + I
Sbjct: 75 SFPMATLMATLLAFSRLSSSSELTALRSIGVPTWRMVVPALVVAALMTVLTFVFNDVIVP 134
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWM------------------QISNPQQDIFIGAK 167
S D + + +
Sbjct: 135 SANLAAADTLDAALGRSVAAERGDNVVYSRYAQLTSIDEKGRERTGNDLAQLFYSRRFRE 194
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ E + + + + ++ ++ + D +
Sbjct: 195 GKMYEVTLLDFTKAGHQQLLIAKTGIWNDARSMWEFRAGRIVDIDSANNRTTSADFDRYF 254
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVA 286
K A + + + + ++ R + P + +
Sbjct: 255 YPFTKAPLDVGKLPSDAAQMTVAQAWRAEALLEQAGDRKEARRLRVRIQEKFAFPAICLV 314
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
LI +S+ + + + F Y + I S G G LLP AA +PV +
Sbjct: 315 FGLIGSSLGVRPNARTSRSQGFGISVLLIFGYYLMSFIFSSLGIKGTLLPFFAAWMPVFI 374
>gi|162146455|ref|YP_001600914.1| hypothetical protein GDI_0631 [Gluconacetobacter diazotrophicus PAl
5]
gi|209543542|ref|YP_002275771.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785030|emb|CAP54574.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209531219|gb|ACI51156.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 357
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 117/362 (32%), Gaps = 8/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
RY L+ L LG L +++ + +G+ +Y ++ A A P
Sbjct: 1 MKRFDRYIQMVTLRAFLLVALGLTALFSLLEFVDQLAFVGQ-GHYRLADAAAYTALLGPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q+ P L+ ++ L + SEL + IG+S ++++ + + + + L+
Sbjct: 60 RFMQVTPIAMLLACLLGLGGLAKHSELTALQGIGLSEARIISAVLRLVVPIVMVLFLLAQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + ++ + ++ ++ E +
Sbjct: 120 FVVPGTRQMAQEGRAAALASATQKDDQDQAF---WAHGDQQYLSVRRFPSETQADDIDIY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQ 238
+ + A I +D L+ V +S + + +
Sbjct: 177 RFAADGSMTSYLHAARAQIGADDVWTLRDVTRKDIVADQFHTSQLDSMAWHAFLSSRQIR 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S S + + + + R E + + I +P ++A+ AA
Sbjct: 237 FLSLPPESVPPIALYRYIQDLK-RHHLPAMRYEQELWARISMPFAMIALIACAAPFVFGP 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS +A G+ + I G L P AL P +L + + + +
Sbjct: 296 PRSQNVGYRMAIGVAIAIVFSLGQEITSRLGLLFDLNPALTALTPSVLLMMSAAYVFIHT 355
Query: 359 ED 360
+
Sbjct: 356 RE 357
>gi|88808511|ref|ZP_01124021.1| possible permease [Synechococcus sp. WH 7805]
gi|88787499|gb|EAR18656.1| possible permease [Synechococcus sp. WH 7805]
Length = 388
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/366 (11%), Positives = 115/366 (31%), Gaps = 14/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L L+ + ++ + + + + + R+P +
Sbjct: 18 LLDRWLLGELLGPLLFAVAAFTVVSLSVGVMFELVRQIVESGLPVGIAVQVLLQRLPSFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ +++ + L+ SEL R++G++ +++ P ++ ++++ T + + +
Sbjct: 78 VISFPMATLMASLLAYSRLSANSELTALRSVGVTATRMIVPALILALVMSGLTFIFNDAL 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---------FIGAKKILPENH 174
+ + + + Q+ + + +
Sbjct: 138 VPRANRSAETTLARALGKAIATEKGTNIVYSRFGRLQETDGTSNKGLAQLFYARKFRDGV 197
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNI 230
+ E + D + K + D + +
Sbjct: 198 MNEVTVLDFTRAGFTQMLVADRAVWNESQAKWQFFDGQILTLTPSGSTTSADFDQYLYPL 257
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMTL 289
K + + + E ++ ++ R E + +P+ + L
Sbjct: 258 SAAPIRIAKLPKDANNMTVVEALQAKDLLQQAGDIKEARRLEVRIQEKFTLPMACLVFGL 317
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I AS+ + + + + Y + S G G L P+ AA PV+++++
Sbjct: 318 IGASLGAKPNNRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWSPVLISLA 377
Query: 350 LSILIL 355
+L
Sbjct: 378 GGGFLL 383
>gi|300703336|ref|YP_003744938.1| permease [Ralstonia solanacearum CFBP2957]
gi|299070999|emb|CBJ42308.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CFBP2957]
Length = 401
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/402 (12%), Positives = 112/402 (27%), Gaps = 46/402 (11%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M +L +YF + ++ L + L D+ + Y+
Sbjct: 1 MMKMLKMPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGR--YTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + + W++ P + F+
Sbjct: 119 TYVFGEFIGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------------- 214
+ P+ I R + +L V E
Sbjct: 179 SLQPDQTIRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFVEFPRKAGAAM 238
Query: 215 -----------------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + + ++ + +
Sbjct: 239 PQDNRQAVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIR 298
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
N R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 299 HLRD-NKQDTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLS 357
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 FQLVNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|329954892|ref|ZP_08295909.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
gi|328526996|gb|EGF54007.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
Length = 380
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 118/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 23 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYMNFIPYF 82
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 83 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGSY 142
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + I S I D
Sbjct: 143 VIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 202
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ KVK + E R I K + ++ F
Sbjct: 203 KQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPADFLIMK 262
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + + E +++ I + +TLI S+S + ++
Sbjct: 263 NQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTKG 322
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + PV A IP +L ++ +
Sbjct: 323 GMGLHLGIG-LGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAFYL 374
>gi|78356992|ref|YP_388441.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219397|gb|ABB38746.1| permease, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 359
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 125/357 (35%), Gaps = 6/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L T+ L + + DL + + + A ++PL
Sbjct: 1 MSILSRYLLRTNLFLTMLTLTIGTGIYLLSDLFDRLDDFLG-AGLGLKVILTYFAVKIPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II QI+P + L+ ++ + R ELV +A GIS +L F++ +++ +
Sbjct: 60 IISQILPAVFLLSAVIQLCVMARDRELVALQAGGISFLRLARFFIIYALIWSAVQLGFSQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ GE+ + ++ N + + W + + I
Sbjct: 120 VLGIYGEREASRIWKEQVRNREIDEVQLTNLWFTEHGRIIHLETLHPAAQKGSGITVYEL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++I K ++ Y + + +K
Sbjct: 180 TPDELSVQRVIRGKSFRADSSGWTLDGCDILIPGSYEVATSESIVLPIEQDVKAFSIVDP 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +++ ++ +S + T ++ + LV M L+A ++ +
Sbjct: 240 RGDPSRLPLWQLQDAIARLTESGS-NVEALRTAWHMKLSYAFSLVTMALLALALI---TW 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I V + F+ YT+ T+ S G++GI+ P+ AA +I L+
Sbjct: 296 RDSIYINVGTSLLLVFVFYTLFTVGGSLGENGIVPPLFAAWTANAFFSLSAIARLIY 352
>gi|126696921|ref|YP_001091807.1| putative permease [Prochlorococcus marinus str. MIT 9301]
gi|126543964|gb|ABO18206.1| possible permease [Prochlorococcus marinus str. MIT 9301]
Length = 401
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/373 (12%), Positives = 117/373 (31%), Gaps = 19/373 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + ++ + ++ + + + + + +P +
Sbjct: 25 LIDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLALKVLFFSLPSFL 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ +++GI ++++P + SI + T + +
Sbjct: 85 VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K+ ++ + + M + K + F +
Sbjct: 145 VPASNKLAEKTLRAGIGSSFSAEQRKDNIMFSRYGSRISSSNKKPTKTNTFLTHIFYASW 204
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------------------DKNS 225
+ + +K K V + I
Sbjct: 205 YENNIMEGVTVLDFSREDFQQILKAKNGVFDKKSSSWIFSDGNIVSIDPSGQTTNIQFQE 264
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLML 284
T K + + + I+ K+ R + + +P
Sbjct: 265 YTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYEKTGNLKEIRRIKVRIQEKFTLPFAC 324
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +S+ + + + + + Y + + SFG GIL P+ AA +PV
Sbjct: 325 LVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFLFSSFGVKGILPPIFAAWLPV 384
Query: 345 ILTISLSILILLQ 357
++++ I +L +
Sbjct: 385 LISLGGGIYLLRR 397
>gi|300727713|ref|ZP_07061099.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
gi|299775001|gb|EFI71607.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
Length = 409
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 114/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K ++ T + ++ + + V+D+NE + E + A +P
Sbjct: 50 KRLDWYIIKKFIGTYFFSIILIISISIVVDINENLAKFTEYHAPLKAIVFDYYANFIPYF 109
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I L SE++ A G+S +L+ P+++ +L+ + +
Sbjct: 110 ANLFSALFVFIAVIFFTSKLAGNSEVIAILAAGVSFKRLMRPYMISCVLISMLNYYLSAY 169
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G + + +K+ +D + I ++ D
Sbjct: 170 VIPHGNVVRQNFESLYKNKKKITSADNVMLQIDKGVIVYIQHYDDRLKKGFGFSLDKFEN 229
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQK 239
+ D ++ E + N + ++
Sbjct: 230 KKLVDHMTAMEIQYDTISDSKYHWRMSNWKERHLRGLREHITNGNQKDTTLYMEPTDLVY 289
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + ++ + +S + + E +++ I +T+I S+S
Sbjct: 290 SKGQQETFTSPQLKEYISKQKNRGSGNVVQYEVEYHKRIASSFASFILTIIGLSLSSR-K 348
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP ++ +++
Sbjct: 349 RKGGMGMYLGVGLALSFAYIMLQTVSSTFAIQADAPPMLAAWIPNMIFAIIALF 402
>gi|330751983|emb|CBL80496.1| predicted permease YjgP/YjgQ [uncultured Polaribacter sp.]
Length = 363
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 130/361 (36%), Gaps = 6/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV-LAATRVP 60
I+ Y K +L T L+ LL + + ID++E + E PN ++ +
Sbjct: 1 MKIIDWYILKRFLVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGLNEVLNDYYLNFII 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P + I+ L+ +E++ +S + + P+ +G+ L+ I ++ +
Sbjct: 61 YYTNTFMPLALFIAVILFTSKLSNNTEIIAITNAKVSFTRFMYPYFIGATLITILSLGMN 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + K+ +++ +N ++ + +I + EN++ DF
Sbjct: 121 HYVVPNSSKVRKAFEKKYINNSKQKNALKYVSDFSLQLTDSTYIFIRSFNTENNVGNDFN 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
S T + I L+ D + + D +
Sbjct: 181 SETYNGLELISKLSADRLSYNNKDSIFTLNRWRKRLVYKDRDSIFSGSKMDTVFNFAPKD 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S E++ ++ S K + + + Y +P+ +T+IA +++
Sbjct: 241 LIYKSAFAQEMPSNELVAFINISKKRGVKNLNAYLVELYKRSSLPIASYILTIIAVALAF 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +A G+ F+ + + + G + +A IP IL ++I +
Sbjct: 301 R-KRRGGTGVNLAVGVGIMFLYVFFMKVGEVLGSVAGVNSLAYVWIPNILFGLIAIYLYF 359
Query: 357 Q 357
Sbjct: 360 H 360
>gi|332829399|gb|EGK02053.1| hypothetical protein HMPREF9455_00175 [Dysgonomonas gadei ATCC
BAA-286]
Length = 365
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 117/356 (32%), Gaps = 7/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K +L T ++ ++ + + V D+NE ++ + + VP
Sbjct: 6 ILDRYIIKKFLGTYIFSIILIISIAVVFDINEKLDKFLDKKAPLTAIIFDYYVNFVPYYT 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I L SE++ + G+S +L+ P+++ + ++ +F+ ++ + I
Sbjct: 66 NLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVFSFVLSSFI 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
I ++ + + + I I K ++ D
Sbjct: 126 IPPANVTRIKFQNKYVRDKSVEYASGIQLQVDKGVILYIERFDNKTKEGYNLSLDKIEDK 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K R D A + + + + + + + F
Sbjct: 186 ELKSRLTAQRIKYDSAYHWELYNYKIR-ELQGMREVISNGDKIDTTLNVVPSDFLISVND 244
Query: 244 FASRSFYEIIKKMSFSNKS-----NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
F + + K + + E +F+ +T+I AS+S
Sbjct: 245 FEQMTTPVLYKYIQRQRDKGIATVGDVSITQFEIEFHKRFASVFSAFILTIIGASLSARK 304
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ T+ SF SG + A IP ++ ++++ +
Sbjct: 305 VK-GGMGLNIGIGLGLSVSYIMFQTVSSSFAVSGTMPAWLAVWIPNLVFMAIAAYL 359
>gi|284929068|ref|YP_003421590.1| putative permease [cyanobacterium UCYN-A]
gi|284809527|gb|ADB95232.1| predicted permease [cyanobacterium UCYN-A]
Length = 402
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 43/369 (11%), Positives = 116/369 (31%), Gaps = 16/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + + + IL I + + + + + ++P
Sbjct: 31 LIDRYILSQLIGPLAFSVGLVSILGVAIGYLSDLSNKVVESDLPLIQALEIIFLKIPEFT 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ ++ + L+ SEL+ R G S+++L+ P + S+++ T + I
Sbjct: 91 AYALPISMMLSTLLTYGRLSGDSELIALRVCGASLYRLVMPAFIISLIMTGITFIFSELI 150
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---------PQQDIFIGAKKILPENH 174
+ ++ + + + +Q + +
Sbjct: 151 VPAANYRVTSILVEHLQEERPYWQNKDIFYPDYEKVVLPDGSTEKQLKHLFFAEKFDGQK 210
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++KK I D+ ++ YQ + + +
Sbjct: 211 LETLTVLEWLEKKLNRIVVSDSAAWNAQDETWDFFNGTIYQLAPDSSYQGTYSFKHRQLP 270
Query: 235 -----DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMT 288
F + + ++ K M R + + I P + +
Sbjct: 271 LAKSAFEFIQEGRDPYEMNIFQAQKYMKILRVMEDEQKLRTFQVRVQQKIAFPFICIVFG 330
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+I +++ + + F+ Y + ++ S G G++ P AA +P + +
Sbjct: 331 VIGSALGTSPQYI-NRAMGFGLSVVIVFIYYLLGFLIGSLGLIGVVSPFMAAWLPNAIGL 389
Query: 349 SLSILILLQ 357
+ + +L
Sbjct: 390 GIGLYLLYW 398
>gi|281424311|ref|ZP_06255224.1| putative membrane protein [Prevotella oris F0302]
gi|281401580|gb|EFB32411.1| putative membrane protein [Prevotella oris F0302]
Length = 432
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 112/354 (31%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K ++ T +Y + + + V+D+NE + E + +P
Sbjct: 73 KRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 132
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ IL+ + +
Sbjct: 133 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSGY 192
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ I D +K+N +D + S I D
Sbjct: 193 VIPHSNVIRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKFQD 252
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D ++ + I ++
Sbjct: 253 KKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEPTDLVY 312
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + + +++ I +T+I S+S +
Sbjct: 313 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSLSAK-K 371
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + L PV AA IP ++ ++
Sbjct: 372 RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANLPPVIAAWIPNLIFAVVAYF 425
>gi|187922983|ref|YP_001894625.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|296162275|ref|ZP_06845069.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
gi|187714177|gb|ACD15401.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|295887429|gb|EFG67253.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
Length = 382
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 113/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L + T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVLLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
+ +++ + + + + W++ +
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N ++ D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 AKEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|159903539|ref|YP_001550883.1| putative permease [Prochlorococcus marinus str. MIT 9211]
gi|159888715|gb|ABX08929.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
Length = 401
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/367 (12%), Positives = 112/367 (30%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + L+ + ++ + + + + + R+P +
Sbjct: 31 LLDRWLLGELIPPLLFAISAFTVVSLSVGVMFDLVRQIVESGLPFNIAIQVFLLRIPGFL 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL R++G+S +++ P + ++L+ T + N I
Sbjct: 91 VLSFPMAMLMATLLAYSRLSSNSELKALRSLGVSTKRMIAPAMALALLITSITFIFNNSI 150
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM----------QISNPQQDIFIGAKKILPEN 173
+ ++Q + + + + +N
Sbjct: 151 VPISNRNSEYILQNSLGKAISNQIGEDIIFSRKGRIDGLKDEKKRKSLTHLFYAGKIDKN 210
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLN 229
I + K + + L + S +
Sbjct: 211 KISKLTLLDFSKKGYTQMIVANKALWNESKGIWDFIDGMMLTLSPTGNTTTTKFQSYSYP 270
Query: 230 IPIKMDGFQKFSEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + E + + + NI R + +P+ +
Sbjct: 271 LGTGPIKIGSIPKDANDMTVSEALKAEQLYLKSGNIKEARRMRVRIQEKFTLPMACIVFG 330
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +++ + S + +F + Y + S G SG L P AA PV L++
Sbjct: 331 LIGSTLGAKPSTTTSRSQGFGVSVFLILIYYVLSFSFSSLGVSGALTPFFAAWTPVFLSL 390
Query: 349 SLSILIL 355
+ +L
Sbjct: 391 AGGAFLL 397
>gi|91782194|ref|YP_557400.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
gi|91686148|gb|ABE29348.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
LB400]
Length = 382
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 113/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L + T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQSLRSLLKIGIPLVLLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
+ +++ + + + + W++ +
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N ++ D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 AKEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|255536554|ref|YP_003096925.1| hypothetical protein FIC_02430 [Flavobacteriaceae bacterium
3519-10]
gi|255342750|gb|ACU08863.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
Length = 364
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 123/362 (33%), Gaps = 6/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ + K YL T + L ++V +ID+ ++ +
Sbjct: 1 MKIIDLHIIKKYLGTFAFMLGLLTLIVLIIDVQAKAPRIESNGFSVTEFLINFYPYWIVN 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + + I + +E+V + G S + P+++ S + +L+ +
Sbjct: 61 LIITFMSILVFISVIFFTSRMANNTEIVAIISSGASFHRFARPYLITSSFIAAIALLLNH 120
Query: 122 PIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +L + ++ + + IFI + +
Sbjct: 121 FVLPLANVKKNELEPYTYTAKSREEYIGNTEVSTQLSKSEYIFIKSYNRKERRGSGFMYQ 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
++K + L +E + +K ++ T + +
Sbjct: 181 KFDKNRKLTYQIIANEFSWDDKKSHFILNSYLEKTVRKDETEKLGSGDTMTKSFGHPPEE 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+++ ++I + + + + + + +P+ ++ +T + S++
Sbjct: 241 LFPGVLLGQNKTTPDLIGFIDREKEKGNANLGNYQNELHQRTSMPVSVIILTFLGLSLAS 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + +A GI F+ +K K+ L P+ A +P ++ +++ + L
Sbjct: 301 QKKR-GGLGMNLAIGISLAFVFVFSFEALKVVSKNQSLPPLLAMWLPNLIFGPVALYLYL 359
Query: 357 QK 358
++
Sbjct: 360 KR 361
>gi|239815706|ref|YP_002944616.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
gi|239802283|gb|ACS19350.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
Length = 369
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 123/372 (33%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRV 59
+ R + LK + LG + L F D + +G + Y ++ + +
Sbjct: 1 MKTIRRLIYVEALKAVAFVTLGFLSLFFFFDFVDELQSIGRPESLAYGPAQALIYVTLLI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L ++ + T +
Sbjct: 61 PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVFLTFAI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ IA + E+ L++ + W++ + I + ++
Sbjct: 121 GDYIAPASERT-GQLLKSRYQGSYSLVGNTGAWLKEKRENVSYAVNVLSIARDGS-LKNA 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---------STTLNI 230
D + + A A I++D +L V Y +
Sbjct: 179 RIFEFDANGYVRKQLVASSARIFDDHWQLSDVELQDYETRISAEKARIVTTKVPQLDWPT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + ++ + + R E QF+ + PL + M ++
Sbjct: 239 TLTSEMVSVALLRPDRMGTLDLFDYIRHLEANGQ-TAQRYEIQFWRKVFYPLSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + R V G+ G + + + G P A P ++ +
Sbjct: 298 ALPFAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVM 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLAAFSWLVLRR 369
>gi|264678997|ref|YP_003278904.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
gi|262209510|gb|ACY33608.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
Length = 367
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 58/370 (15%), Positives = 123/370 (33%), Gaps = 16/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVP 60
+L ++ ++ LY L + L F DL + +G Y+ +R + A +P
Sbjct: 1 MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVALSIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V ++SE I R G+ W L ++ + + TVLV
Sbjct: 61 GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA + + L G + W++ + I +
Sbjct: 121 DYIAPAADNFSQKLR--VVSKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFVNVRI 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--------KNSTTLNIPI 232
K + + + + V+ D + S +
Sbjct: 179 FEFDSKGRIAAQINAQSAQVDEDREQWTLQGVQGSKVAQDGDVTKLSPISEASMNWPTKV 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + + + + E +F+ + PL + M ++A
Sbjct: 239 TAAMVSGALLKPDRMTTIALFQFIRHLQDNGQA-AQKYEIEFWRKVFYPLSCLVMVVLAL 297
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 298 PFAYLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSL 357
Query: 353 ----LILLQK 358
++L++
Sbjct: 358 SAFGWLVLRR 367
>gi|153806356|ref|ZP_01959024.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
gi|149131033|gb|EDM22239.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
Length = 365
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 8 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T ++ +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + + + S I + N D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNTARNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D A ++ + V E + I K + I ++ F
Sbjct: 188 KKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDKIDSIINMEPSDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + PV A IP IL ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFFL 359
>gi|116070679|ref|ZP_01467948.1| possible permease [Synechococcus sp. BL107]
gi|116066084|gb|EAU71841.1| possible permease [Synechococcus sp. BL107]
Length = 384
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/370 (12%), Positives = 106/370 (28%), Gaps = 17/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L ++ L+ + +L I + + + I L +P +
Sbjct: 14 LLDQWLLAEIAAPLLFAIASFTVLGLSIGVMFELAR-RLVDGLPILVALQLLLLNIPSFL 72
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL ++ + L+ SEL R++G+S +L+ P + SI L T + + I
Sbjct: 73 VLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTTRLVVPALALSIFLTGLTFVFNDVI 132
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD----------IFIGAKKILPEN 173
+Q+ + D + + +
Sbjct: 133 VPRANTQAEITLQKGLGRALATEKGKDITFNSFGKIYDPKTETSSRGLRQLFYARRFEQG 192
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLN 229
+ + + + + + + +
Sbjct: 193 EMLDVTLLDFSRADYRQMWIAERAVYNEAKAMWEFFNGQVLTLNPNGSTTRLAFDENFYP 252
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ K + + + I + + R + P+ +
Sbjct: 253 LSSGPLQVAKLPDDANDMTLSQAISAEKIESDAGNIKAARKLRVRIQEKFSFPMACIVFG 312
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ I Y + S G SGIL P AA +PV++++
Sbjct: 313 LIGSSLGARPGSRTSRSQGFGVSILLILGYYALSVSFSSLGVSGILPPFFAAWLPVLISL 372
Query: 349 SLSILILLQK 358
+LL++
Sbjct: 373 GAG-GLLLRQ 381
>gi|114569776|ref|YP_756456.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
gi|114340238|gb|ABI65518.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
Length = 365
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 80/363 (22%), Positives = 156/363 (42%), Gaps = 5/363 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY L L ++ ++D E +G + S L R P +
Sbjct: 4 GRLNRYMASQTAGGLLLAFLTIATVIILVDFVEQSRAVGTRVDVSTLDLLGLTLLRAPAL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ +PF+ L + F LNR+SEL++ RA GIS W++L +V ++ +GI +NP
Sbjct: 64 LESTLPFVFLFGTLTSLFRLNRSSELIVMRASGISAWRILTAPMVLAVGIGIIGATGLNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + + ++ W++ +N I A ++ + + +
Sbjct: 124 LAATLNAEFEARRDSLMNVRRVEGAEQPVWLRETNIDGFTVIAATQLEEARQVLRNPVFL 183
Query: 183 TIDKK----NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ R DA+ A + ++ +E +D + + I
Sbjct: 184 QFAEDASGTPRLERRIDAESAELRAGFWEVTGAIERTPTPSRLDLGAIAMPTSINRQALF 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +F+++ + ++ + ++ R E + + L+ +PL L+A TLIAA+ +L
Sbjct: 244 ERARSAEGVAFWDLPRLITSAREAG-LATQRYELRLHALLALPLTLLASTLIAAAATLRL 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R G +GF+++ ++ SFG SG L P AA LT L+++ +
Sbjct: 303 HRLGGAAAFAMAGGIAGFVMFFFQEMLSSFGVSGALPPATAAWSAPALTALLALIYIAST 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|160902798|ref|YP_001568379.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
gi|160360442|gb|ABX32056.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
Length = 1153
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 132/356 (37%), Gaps = 4/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L++Y K ++ L+ ++ V + +L +++ N S+ +L +P
Sbjct: 1 MKK-LFKYVSKEFIPPFFMGLIAFIVFVSL-ELLYQLSEIIVRNNVGFSKLLILIWYHLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I IP L V L+ +E++ + +GI + +L+ PF+ S+LL FT +
Sbjct: 59 YFISMGIPVGVLFGIFWVISKLSSANEIIALQTLGIPMKKLIIPFMTISLLLSFFTFALF 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I + + + + + + ++ + + + + + +
Sbjct: 119 NTIVPVSNYKAKEAMALYVYQRPQAQIEENQFVDVGDGRYLFVKQIDRESGILYDVLLYE 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ Y ++ + E + + I + L+I ++ F F
Sbjct: 179 VKNDYTAVFNAQQAQKGPDGWYMKNGRMFRTNEDGFLDLDITFDQLQLDIQEDVEEFLNF 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S+ + E+ +K++ +K + L + + ++ ++SL +
Sbjct: 239 SKSANEMTSKELKEKITTFSKLG-LDVSGLIVSYQSKFANSLAPLVICILGIALSLFLNL 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+++ ++ + + + + GK I+ P + IP I+ + + L
Sbjct: 298 TSKSWSVITTFVLV-IIYQGSGAWLSALGKEHIINPTISVWIPNIIFGIIGTFLFL 352
>gi|167763060|ref|ZP_02435187.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
43183]
gi|167699400|gb|EDS15979.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
43183]
Length = 380
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 118/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 23 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWQAIIFDYYMNFIPYF 82
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 83 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGSY 142
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + I S I D
Sbjct: 143 VIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 202
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ KVK + E R I K + ++ F
Sbjct: 203 KQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPADFLIMK 262
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + + E +++ I + +TLI S+S + ++
Sbjct: 263 NQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTKG 322
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + PV A IP +L ++ +
Sbjct: 323 GMGLHLGIG-LGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAFYL 374
>gi|254527024|ref|ZP_05139076.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. MIT 9202]
gi|221538448|gb|EEE40901.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. MIT 9202]
Length = 401
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/374 (12%), Positives = 114/374 (30%), Gaps = 21/374 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + ++ + ++ + + + + + +P +
Sbjct: 25 LIDRWLLGQIIPPMVFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ +++GI +++ P + SI + T + +
Sbjct: 85 VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 144
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------------------PQQDIFI 164
K+ ++ + ++ M
Sbjct: 145 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNNSKLTHIFYAQW 204
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
K++ + + R D + K + + I
Sbjct: 205 YKNKLMENVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITP-SGQTTNIKFK 263
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLM 283
T K + + + I+ K+ R + + +P
Sbjct: 264 EYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFA 323
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ LI +S+ + + + + + Y + I SFG GIL V AA +P
Sbjct: 324 CLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPAVFAAWLP 383
Query: 344 VILTISLSILILLQ 357
V++++ I +L +
Sbjct: 384 VLISLGGGIYLLRK 397
>gi|89891008|ref|ZP_01202516.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
gi|89516652|gb|EAS19311.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
Length = 357
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 122/356 (34%), Gaps = 5/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + YL L L + ++ + + E ++ + + +
Sbjct: 1 MLKILDRYILRQYLGAFLLLLCLFIPIMITVHIAEKIGKILSK-DIPFTEVMMYLLDFTI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + + L +E+V + G+S + L P+++G++L+ + ++
Sbjct: 60 YFSNFLFPIFLFISTMFFTSKLANNTEIVAFLSSGVSYNRFLRPYIIGAVLVCVTALVFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + +++++ + + + +++ +
Sbjct: 120 TVFVPDAAAGFNEFQFKYFKSEKERQTNNV--FRRISDDDYVYVSNYNSGRKTGYDFTLE 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ I+ + + KK V + G I K + +D
Sbjct: 178 HFNGNELEYKIYAERIAFKDSVYTLSRYKKRVLQENGEILTTKAKLDTILNFDIDELTPS 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S+ +++ + + + + IP+ + T+IA +VS R
Sbjct: 238 SYVAETLSYQKLLDFIETEESRGNGNMNVYYVEKHKRTSIPVSALIFTIIAVAVSSVKKR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSILIL 355
+ +A G+ + + + + P A P I +++L++
Sbjct: 298 -GGMGVNLAIGLGIAMSYMFLDKVFGTIAEKSTSFEPWIAVWAPNIFFGIVALLLI 352
>gi|170692023|ref|ZP_02883187.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
gi|170143307|gb|EDT11471.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
Length = 382
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 111/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
+ +++ + + + W++ +
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELKPDATI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N ++ D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 ARQVALPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 VLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|293603258|ref|ZP_06685689.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292818347|gb|EFF77397.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 372
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 59/355 (16%), Positives = 116/355 (32%), Gaps = 20/355 (5%)
Query: 22 LGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFN 81
+ + L L + + +G+ +S+ + A +P + ++P L+ I+
Sbjct: 1 MALLGLFTFFALVDDLDNVGDK--FSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAG 58
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
L + +ELVI R G+S +LL V +I L I L+ + E + ++
Sbjct: 59 LAQRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGK 118
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ W + + I L + T K + A +
Sbjct: 119 AGGDRLKSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTVLSTAPTGLF 178
Query: 202 YNDKVKLKKVVEYQ-----------------YGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + LK V E + + T++ + +
Sbjct: 179 SHGDLVLKDVSETRLDNDAADALANARQPKNPPASVVKVPERTIDTTLSAERLLARVLTP 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S ++ + + N R + + P L+ M IAA + L +R
Sbjct: 239 ERMSIVTLLDYVEYLRD-NQLQYGRQVVALWRKLAYPFTLLVMITIAAPIGLMQTRRGGV 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
V GI G + + + + G G AL P I ++L++ + E
Sbjct: 298 GAKVFIGILLGVGFFMLNQLALNVGMLGKWPSWLTALGPNIGAMALALGAMSYME 352
>gi|218131075|ref|ZP_03459879.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
gi|217986779|gb|EEC53112.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
Length = 380
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 23 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPYF 82
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 83 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGSY 142
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + I S I D
Sbjct: 143 VIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFKD 202
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D A ++ VK + E R I K + ++ F
Sbjct: 203 KQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRESIVKGEKMDTILFMEPADFLIMK 262
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + ++ + + E +++ I + +TLI S+S + ++
Sbjct: 263 NQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLSSKKTKG 322
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + P A IP +L ++ +
Sbjct: 323 GMGLHLGIG-LGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIAFYL 374
>gi|332142603|ref|YP_004428341.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
gi|327552625|gb|AEA99343.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
Length = 366
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 116/356 (32%), Gaps = 9/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI--WEDFTS 181
A + L ++ ++ + Q N + IF+ + +
Sbjct: 121 APLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDKNDKLQRVFLSQNQT 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++++ + ++A + L QY I +K +
Sbjct: 181 SDSEGDVRVVYAQTGEVASNPDGTRNLVLKQGVQYEGIQSEKAYRKVEFDEYQIQIADKP 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R + + + A + + I IPL + + LIA +S R
Sbjct: 241 ADETRRKVSVLPTS-----ELWEDDSIEARAELQWRIAIPLSIPFLILIAVPLSAVDPRQ 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I + ++ + + G + P + + + I ++++
Sbjct: 296 GRFGK-MFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGITLIVR 350
>gi|299140954|ref|ZP_07034092.1| membrane protein [Prevotella oris C735]
gi|298577920|gb|EFI49788.1| membrane protein [Prevotella oris C735]
Length = 424
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 111/354 (31%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K ++ T +Y + + + V+D+NE + E + +P
Sbjct: 65 KRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 124
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ IL+ + +
Sbjct: 125 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSGY 184
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ I D +K+N +D + S I D
Sbjct: 185 VIPHSNVIRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKFQD 244
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D ++ + I ++
Sbjct: 245 KKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEPTDLVY 304
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ +S + + + +++ I +T+I S+S +
Sbjct: 305 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSLSAK-K 363
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F + L PV AA IP + ++
Sbjct: 364 RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANLPPVIAAWIPNFIFAVVAYF 417
>gi|89094619|ref|ZP_01167556.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
gi|89081089|gb|EAR60324.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
Length = 362
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 123/368 (33%), Gaps = 20/368 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY ++ L L LL L + L E + NYS + +P
Sbjct: 1 MSLIDRYIARHVLGGFLVVLLVVAGLDMLFALVEELKDV--QGNYSFAAAVEYVLLTLPR 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + IP +L+ ++ L +SEL + RA GIS ++ + +L+ + +
Sbjct: 59 RLYEFIPLSSLIGCLLGLGILASSSELTVMRAAGISTLGIIISVMKPVLLIIALALGLGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ Q G W + + + + T
Sbjct: 119 FVVPHTEQRAQSHRQVMLTGGGAIHDASRVWHRDD-----MTFLHINAVIPDGSVRGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------------NSTTLN 229
++ + A++ + K L + E ++ +
Sbjct: 174 YEFNEDLTLKRSSFAEVGRYEDGKWLLTDIQESRFPDAKGREQRATSSIVTTEIEQEIWE 233
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ D + Q + S +++ ++ + + F+ +++PL + A+ L
Sbjct: 234 SGLTPDLLKVVMVQPTNLSISGLVQYSNYLTDQGLASE-QYRIAFWNKLLLPLAIFALVL 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A S RS + GI G + I+ P A +IP+++ I
Sbjct: 293 VAVSFIFGPLRSVTLGQRLITGIIVGLVFKLSQDILGPTSAVFGFYPFVAVMIPILICIG 352
Query: 350 LSILILLQ 357
+ +L +
Sbjct: 353 VGFWLLNR 360
>gi|310778172|ref|YP_003966505.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
gi|309747495|gb|ADO82157.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
Length = 358
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 127/361 (35%), Gaps = 6/361 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY ++K+ + L G + + + L ++ + E + + +P
Sbjct: 1 MKKI-DRYITMNFIKSIVLSLFGFINIFILSQLFKVIRYVTE-GRFGGVDAIYYIISLLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +++P L+ ++ + + E++ + GIS +++ ++ + ++ +
Sbjct: 59 DIIIKVMPLAVLLGGLMTINKMASSLEIIALKTSGISFKRIITFPILIAFIISCGVYYMN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I K ++ + ++ + +S +++ + +I E
Sbjct: 119 DKIYPESIKKSREIKRGGYEDMELPESRKKAFLRGKDNYVYYAESINRITSTAVNIEILE 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
+ +K I + + N K + V + + + + F
Sbjct: 179 LDSEFEKLTKIITAEKGIYHRENKLWKFENVTVNNLEKKSSYTLPVMQDVRYDDEPERFL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + E+ + ++ ++ + ++ + S+ +
Sbjct: 239 APSVNPKLLTIKEMRSTLGAIKQTGG-NSREILMELGDRTSFSFASFVVSFLGLSLGSRY 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + VA + G+ Y + M++ G++ P A IP IL + L I + +
Sbjct: 298 VR-GASAVSVAMSVGLGYSYYIVQASMEAISMGGVIHPFIGAWIPNILFLILGIYAMYKA 356
Query: 359 E 359
E
Sbjct: 357 E 357
>gi|145588806|ref|YP_001155403.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047212|gb|ABP33839.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 384
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/376 (16%), Positives = 117/376 (31%), Gaps = 25/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I RY + + L + L D+ + Y+++ + + P
Sbjct: 6 PYIYERYLARQIYAAFGFILFALVALFLFFDILSELGSV--QGQYTLALALLHVLLKAPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +IIP L+ +I VF L SE I R G+ + + L S+ L + T+++
Sbjct: 64 RISEIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLITLGKISLPLIVLTLVMSE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---------IFIGAKKILPE 172
E + + + + W++ +D ++ K+ +
Sbjct: 124 WAGPYTEAKSEQIRMKALGSSYSSQFKTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVEKD 183
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---------- 222
N I + D N + R L V E ++ I
Sbjct: 184 NEIRDIRMYEFNDVYNLLSIRSAVSGHFDETGIWVLNDVTETRFKEIKQTDPLNPVFSAQ 243
Query: 223 ---KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
TL + S + + + + N R F+ +V
Sbjct: 244 TLTHPILTLESEVTPQILSVLLISPEKMSILSLGRFIDHL-QENKQDVQRHSIAFWKKVV 302
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P + M +A + R+ I V GI G ++ + G
Sbjct: 303 YPFTIFVMLALALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGMLSAWPAFMT 362
Query: 340 ALIPVILTISLSILIL 355
AL P +L L+++ L
Sbjct: 363 ALTPPLLYFLLALMGL 378
>gi|118594057|ref|ZP_01551404.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
gi|118439835|gb|EAV46462.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
Length = 344
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 127/346 (36%), Gaps = 10/346 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ G + L D + +G+ Y IS +P I + +P L+ ++
Sbjct: 4 IFMIMFGLISLFAFFDFIQEIGDLGK-GGYGISHAMTFVILSIPGHIYETVPLAVLIGSM 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
L+ SEL + RA G SI ++ ++ IFT+L+ + IA + EK +
Sbjct: 63 YTIGQLSYNSELNVIRASGFSIKKIATSLMITGGFFAIFTLLIGDLIAPNSEKNAQQMKI 122
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
++ Q+ W++ +I + + E D + + +A
Sbjct: 123 GLTNSVVGQEFSSGFWIKDGGNFVNIEN-----VLPDATLERINIYEFDSQFNLRTIVNA 177
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEII 253
+ + +L+ + + + K S + ++ + S + +
Sbjct: 178 EKGAYEEGEWRLENITQTILYENSVKKKSIPMGSWKSLMRPEMMNALIISPEKMSSFNLY 237
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K +S+ +N + E + I+ PLM + M + A RS + GI
Sbjct: 238 KFISYLKINNQKST-KYEVALWEKIIHPLMPLVMIIFAVPFGFLQERSGGKFFKMFIGII 296
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
G T+++ P ++L+P ++ + L + ++ + E
Sbjct: 297 IGIAYQITNTLIRHLSLLNDWQPFISSLVPTLIFLCLGLYLIKRFE 342
>gi|307728895|ref|YP_003906119.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
gi|307583430|gb|ADN56828.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
Length = 382
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/378 (15%), Positives = 111/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
I +++ + + + W++ +
Sbjct: 120 VIGPYTDQLSERVRLEAMGSSVSSNFKSGVWVKDTLTARADGEQVTRFVNVGELKPDATI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N ++ D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRIAQSGVYQPPGHWRLTGVTDTQLIDVPPPAGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 AKQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 VLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|257462589|ref|ZP_05626999.1| hypothetical protein FuD12_01974 [Fusobacterium sp. D12]
gi|317060240|ref|ZP_07924725.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313685916|gb|EFS22751.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 361
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 108/362 (29%), Gaps = 6/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +LK Y L + + + + ++ + S + +P
Sbjct: 1 MKKLDIYITKNFLKYFSYSLFSFLAIFVLSQIFKVLRYV-NEGQLSAGEVPLFIGNLLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II + P L+ ++ + E++ + GI +L+ ++ S + + + +
Sbjct: 60 IIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPILVSFFISLVVFYLND 119
Query: 122 PIATSGEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +L + ++ ++ + + + E
Sbjct: 120 RVYPGSVVRNRELRGKEDVEERELPKEKENAFFRNEEGRYVYYMKKINREKGIMDYVEIL 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST--TLNIPIKMDGF 237
K + I K+V Y + + D F
Sbjct: 180 DMSEDFDKIERIITAKQGKYDFEKKIWIFKEVNLYYPETDRTESRVWIQDEKYRDEPDRF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + +KK + ++ P ++ + ++
Sbjct: 240 ISLSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGSH 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + + +
Sbjct: 300 YVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMRR 358
Query: 358 KE 359
E
Sbjct: 359 AE 360
>gi|269121333|ref|YP_003309510.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
gi|268615211|gb|ACZ09579.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
Length = 364
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/360 (12%), Positives = 126/360 (35%), Gaps = 11/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y +K + +++ + ++ + +I ++ + VP
Sbjct: 1 MKIIDKYIYKALILPSVFGISIFTFILIINVFIDIMEKLF-TNDLPFLLVIDYFIYLVPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q IP + ++ + N + T+E++ + G S++++ P ++ ILL + + +
Sbjct: 60 VLTQTIPMGAFLGVMLTYGNFSETNEIIAIESAGTSLFRITRPAIIFGILLTVLGLFMEI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + ++ ++ SN ++ F
Sbjct: 120 EVNPRALNNINIEKRNLFSSKPSSLTEAKVFL--SNSDAGFGFYVDEVDNSKAEASKFVL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-------PIDKNSTTLNIPIKM 234
K+ + A+ A + LK V + + + ++ ++ K
Sbjct: 178 FQRTKEGEYPTVFFAEKAKFEAGYMLLKNVEGFNFDKTGDRKVVARYEEQYLPMSTFFKQ 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +K S + K S + + + + ++ I+ P V + + +
Sbjct: 238 EDIEKKSRSEMNLRELREAYKQSIAEGESYEDSVKYMIKYNERIIGPFASVLLCWLGVLL 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS + I + F + + K + + P A +P + + L +++
Sbjct: 298 AVSNKRSGK-GISFGISLIVIFAYIGLASYAKIVVQKNHIDPNIAMWMPNFILLVLCLVL 356
>gi|198283962|ref|YP_002220283.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218667335|ref|YP_002426598.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248483|gb|ACH84076.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218519548|gb|ACK80134.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 357
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/355 (14%), Positives = 114/355 (32%), Gaps = 4/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
R F+ L + L + LV++ + + +S++R AA ++P
Sbjct: 1 MKRADRLLFRGMLLYSSLVLAMLLTLVYIAQIIAKSSG-PGHGVWSMTRLLSYAALQLPD 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IP L+ +V L+ SE++ R G S+W+L P ++ +L +
Sbjct: 60 VAYDVIPLALLLGALVWMSILSGHSEVIALRMSGWSVWRLEQPLLLVGLLGAGLMFALGE 119
Query: 122 PIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + G W++ + ++
Sbjct: 120 WVIPVTAPAAEAMWANAGEPGAGFHNMGPRGLWLRYGTQIIQVGTVGDGGKILQNLHIAD 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ N + +A + ++ T + +
Sbjct: 180 VRQGMVGINAMTTAAEAVFQGGHWYLHDVRLFRITPDQIQMTAVTETPWPVALHPATLSS 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
F+ + + + + +S + R F+ + P + + M L+A
Sbjct: 240 FAHPTRTMTLPTLWQSYQAL-QSGALNMNRFALAFWRRVSYPWVGLVMILLAVPFVTRNP 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R V G+ G + + + SG + P+AA L+P+ L +++ +
Sbjct: 299 RGGGLAARVMAGLVLGLGFHFLTEMSGYISVSGGIPPLAATLLPIALFAAVAGAL 353
>gi|153004268|ref|YP_001378593.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152027841|gb|ABS25609.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 370
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 104/361 (28%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K L LL ++ L + + S+ + +P
Sbjct: 1 MRLLHRYLAKEILLPFAAGLLFLTQILLATQLLAQADVLFG-SGVSLVDVGAVVLYLLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ ++ L E+V A G S L+ + + + + +
Sbjct: 60 FLGYVLPIAFLLGAVLGVGRLAEDREVVALGAAGFSPAFLVPVPLAIGVAVAGLGLWLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + N + D +
Sbjct: 120 DVVPRSLDAARLRLNEIVKRNVMNDVRPGTFYDQIPGYTLYAERVHGGRWGNVLISDRSD 179
Query: 182 ITIDK-------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + ++ + +V ++V +Y + L + +
Sbjct: 180 PAAPVLALARAGGLEPVGAGEEMRLVLDDGEVHREQVDADEYVLATFRRADVVLGLGTAL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S + K + RAE + I PL ++ L+A +
Sbjct: 240 SDRNAVSRTGRDDLAGLQARVAEARAKGDAAAARRAEGSLHRRIASPLAVIPFALLAVPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SR V Y ++ + + G+L A +P ++ ++++ +
Sbjct: 300 --GASRRAGRAFGVGATFLVVVAHYLLLRSGEVMAQRGVLPAPLALQLPTLVLSAIALAL 357
Query: 355 L 355
+
Sbjct: 358 I 358
>gi|237713241|ref|ZP_04543722.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406619|ref|ZP_06083168.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646169|ref|ZP_06723825.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|294807861|ref|ZP_06766643.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|298484045|ref|ZP_07002214.1| membrane protein [Bacteroides sp. D22]
gi|229446708|gb|EEO52499.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355322|gb|EEZ04413.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638498|gb|EFF56860.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|294444923|gb|EFG13608.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|295084257|emb|CBK65780.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
gi|298269826|gb|EFI11418.1| membrane protein [Bacteroides sp. D22]
Length = 365
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 118/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 8 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFTLSSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + + S I + N D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D A ++ + V E + I K + I ++ F
Sbjct: 188 KKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + E+ + + + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPELSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + P A IP IL ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTITSTFAVNGNVPPAIAVWIPNILYAGIAFFL 359
>gi|160884582|ref|ZP_02065585.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
gi|260174906|ref|ZP_05761318.1| hypothetical protein BacD2_23825 [Bacteroides sp. D2]
gi|315923149|ref|ZP_07919389.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156110321|gb|EDO12066.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
gi|313697024|gb|EFS33859.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 365
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 118/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 8 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + + S I + N D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D ++ + V E + I K + I ++ F
Sbjct: 188 KKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + E+ ++ + + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPELSDYIAKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + P A IP IL ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIAFFL 359
>gi|228472720|ref|ZP_04057478.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228275771|gb|EEK14537.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 359
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 112/358 (31%), Gaps = 4/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K Y T L + + ++D E +M + + A V
Sbjct: 1 MKIIDRYILKRYFLTYSALFLMFIPIGILVDYAEKNQKMTD-NHAPTEAIIKYYANFVVH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E+V + GIS + L P+ G+ +L +F +L+
Sbjct: 60 FANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLLMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + K + N + + +
Sbjct: 120 FVVPYSSGVYNEFYGTYLSKDLYSKGSRLYNQVNKNEYIYVSSFDANTNQGANFVLERFD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + I + + +
Sbjct: 180 GLRMTDKITANSIEWVQNDSVKTYRLYNYTHRKVGDWNDIYEKVYQKDTLLNFKTTDLLP 239
Query: 242 EQF--ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ +++F+E+ K ++ + + E +Y + +T+I +VS
Sbjct: 240 IEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAVSSVKK 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A+G+ GF I + + P+ A +IP + L++ ++ +
Sbjct: 300 R-GGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVYMIRK 356
>gi|255691880|ref|ZP_05415555.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
gi|260622433|gb|EEX45304.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
Length = 365
Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 120/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 8 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T ++ +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + + + S I + N D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNTARNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D ++ + + E + I K + I ++ F
Sbjct: 188 KKLVSHLTARRVTYDTTTVHKWTIHDYMIRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + PV A IP IL ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFFL 359
>gi|332991780|gb|AEF01835.1| permease YjgP/YjgQ [Alteromonas sp. SN2]
Length = 366
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 116/354 (32%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYITRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L ++ ++ + Q N + IF+ + + T
Sbjct: 121 APMAAENEYQLREKARNEAGLSAIIPGRFQQTGNAKAVIFVHDIDTDDQLRRVFLSQNKT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ +N++ + N V++ + ++ D +Q
Sbjct: 181 ENGENQVQVVYAQTGQVASNPDGTRNLVLKQGVQYEGQQSQKS--YRKVEFDEYQIQIAD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + A + + I IPL L + LIA +S R +
Sbjct: 239 KPAEEARRKVSVLPTTELWGDES-IEARAELQWRIAIPLSLPFLILIAVPLSAVDPRQGR 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + ++ + + G + P + + + + ++++
Sbjct: 298 FGK-MFPAILLYLGYFLLLLASRRVLEDGKIPPQLGLWWVHTIMLIIGVALIVR 350
>gi|171914738|ref|ZP_02930208.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
4136]
Length = 576
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 122/366 (33%), Gaps = 15/366 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + +L+ ++ + L V+DL + E S ++ + +P I
Sbjct: 176 KILERYVMRSFLQPVMFCFIAFCTLWIVMDLLDNMQDFQENK-ISRAQIVMFYIKLIPFI 234
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ + ++RT+EL+ G S++ +L PF V + + +
Sbjct: 235 FVTVAPISLLLSTLYTLGRMSRTNELISMLGTGKSMFDVLKPFYVIACCASLLGMAANYH 294
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A L++ K+ K + + ++ F+G
Sbjct: 295 WAPVSAGNKEKLLENVKERIGKNFLVMGLMYRNQEDRRTWFVGQVPEDLRGDRMRRIEIR 354
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKK-------------VVEYQYGRIPIDKNSTTLN 229
D + +++ A A + D+ V +
Sbjct: 355 QEDDQGRLVKGWFAKSAFWWPDRKVWSFYSGVEVTYKNGQVVAMQNFDAGGGHPRIDFEG 414
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ ++I + ++ T ++ P + + L
Sbjct: 415 WTETPWILLSGTLVPDYLGVPDLISYIRGNSAYGQRKLAPYLTHLFYRFTFPWQCLVVVL 474
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
AA +S+ FSR ++ + F+L + + + GKS ++ P + +P +L S
Sbjct: 475 FAAPLSVVFSRRGLVG-GLSMAVIFFFVLMFMDNLFLNLGKSNVIPPFISVWLPHLLLGS 533
Query: 350 LSILIL 355
+ I +
Sbjct: 534 IGIYLF 539
>gi|172036942|ref|YP_001803443.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171698396|gb|ACB51377.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 394
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 115/357 (32%), Gaps = 16/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY F L L+ + L I + +S + ++P +
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMKILVLKMPGFV 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++ +V + I
Sbjct: 82 SLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVNDWI 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + +Q+ + + Q+ +L E++
Sbjct: 142 APAATHEAAVTLQRAVNQERPDFKERNIVYPEYKTVQEEDGQQVTVLTRLFYAEEYNGDK 201
Query: 184 IDKKNKIIHRKDADL---------AIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLN 229
+ + ++ I ++ Y R + L
Sbjct: 202 MQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQLA 261
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + F + + + + S R + + +P + +
Sbjct: 262 LPRAPLDLANRRQNFTEMTIAQTQEYLKAMQLSGNEKRVRKVKVRLQEKYAMPFVCLIFG 321
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ A++ + + + F Y + + S G G+L P A +P I
Sbjct: 322 VVGAAIGVRPQ-NTNKATSFGVCVGLIFGYYLLAFMSTSLGIWGVLTPFLGAWLPNI 377
>gi|218246939|ref|YP_002372310.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|257060003|ref|YP_003137891.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
gi|218167417|gb|ACK66154.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|256590169|gb|ACV01056.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
Length = 393
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 17/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY F L + + L I + I+ + ++P I
Sbjct: 20 IMDRYLFIEILLPFFFGMGIFTSLGVAIGTLFDLVRRVTESGLLITVALKILVLKMPGFI 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ R++GISI++L+ P ++ S+L+ +V + I
Sbjct: 80 VLAFPMAMLLAALMAYSRLSSDSELIAMRSLGISIYRLVIPAILFSLLVTGLAFIVNDWI 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + +++ ++ + G + + + + +
Sbjct: 140 APAATHEAAVTLEKAVSKERPSFAEQRNIIYPEYRIIQQEDGKETTVLSRLFYAENFNGE 199
Query: 184 IDKKNKIIHRKDAD----------LAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTL 228
++ I+ R D + + Y R + L
Sbjct: 200 EMEELTILDRSQEDVNQIVTSQSATWNVAQNTWDFFNGTIYIIAPDGSYRNIVRFQHQQL 259
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAM 287
+P + F S + + + S R E + +P + +
Sbjct: 260 KLPRAPLDLANRRQNFTEMSIAQTKEYLEVMKLSGNKERVRKVEVRIQEKYALPFVCLVF 319
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+ A++ + + + F Y + + S G GIL P AA P I
Sbjct: 320 GLVGAAMGVRPQ-NTSRATSFGICVGLIFSYYLLSFVTSSLGIWGILTPFLAAWAPNI 376
>gi|221066428|ref|ZP_03542533.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
gi|220711451|gb|EED66819.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
Length = 367
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/370 (15%), Positives = 122/370 (32%), Gaps = 16/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVP 60
+L ++ ++ LY L + L F DL + +G Y+ +R + +P
Sbjct: 1 MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V ++SE I R G+ W L ++ + + TVLV
Sbjct: 61 GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA + + L G + W++ + I +
Sbjct: 121 DYIAPAADNFSQKLR--VVSKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFVNVRI 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--------KNSTTLNIPI 232
K + +++ V+ D + S +
Sbjct: 179 FEFDSKGRIAAQINAQSAQVDEDEEQWTLHGVQGSKVAQEGDVTKLSPISEASMNWPTKV 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + + + + E +F+ + PL + M ++A
Sbjct: 239 TAAMVSGALLKPDRMTTIALFQFIRHLQDNGQA-AQKYEIEFWRKVFYPLSCLVMVVLAL 297
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 298 PFAYLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSL 357
Query: 353 ----LILLQK 358
++L++
Sbjct: 358 SAFAWLVLRR 367
>gi|302037951|ref|YP_003798273.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
gi|300606015|emb|CBK42348.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
defluvii]
Length = 361
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 107/355 (30%), Gaps = 3/355 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY F+ L V + ++ + A +P +
Sbjct: 5 ILDRYIFRELFSPFGISLAAL-CFVMLTKELLRLVELLVTKGIGFLSVLKVFAHLLPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ I F L+ ELV RA G S+ +L + + L+ T+++
Sbjct: 64 VLTLPIAGIIATITAFGRLSLDKELVAMRAAGFSLLRLSQSVFIFAALVCGLTLVMAQYG 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + D + + A++ I+
Sbjct: 124 QPWSNVNLKKVALNLLRDELVLELDRGVFNEAIPKMTIYVPDAQEGQDNRGIFVADERNP 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D + + + + +L V + + P + +
Sbjct: 184 ADPRIIVAQQYQVMTDPASSQVALRLMNGVIHSRPQNPEEYQKISFTSYDLKLSLSASLY 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
R+ ++I+ S + R ++Y + P + ++ V + RS
Sbjct: 244 GAEERTPIDVIRAKLESTGWTDTNALRRLMEYYKDLAFPAASLVFCILGVPVGIVSKRSG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
A G+ Y I + + + P A A +P ++ ++IL +
Sbjct: 304 SIG-GFAVGVLVVIAYYVINVACEFLVTTLWISPFAGAWLPNVIFTVVTILWFYR 357
>gi|29346244|ref|NP_809747.1| hypothetical protein BT_0834 [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568323|ref|ZP_04845734.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298385619|ref|ZP_06995177.1| membrane protein [Bacteroides sp. 1_1_14]
gi|29338139|gb|AAO75941.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
gi|251842396|gb|EES70476.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298261760|gb|EFI04626.1| membrane protein [Bacteroides sp. 1_1_14]
Length = 365
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/355 (14%), Positives = 116/355 (32%), Gaps = 2/355 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 6 LIKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIP 65
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P + I L SE++ + G+S +++ P+++ + ++ T ++
Sbjct: 66 YFSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIAAATFMMS 125
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I G ++ ++ + S I + N D
Sbjct: 126 SFIIPKGSVTRLNFEDKYIKPKKVNSVRNVQLEVDSGVIAYIDNYNDGMKTGNRFSLDKF 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
+ R D + + V E + I K + I + F
Sbjct: 186 VDKKLVSHLTARRITYDTTTVNKWTIHDYMVRELDGLKEKITKGDRIDSIINMDPSDFLI 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + E+ + + + + E +++ I + +T+I S+S +
Sbjct: 246 MKNQQEMLTSPELSEYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKT 305
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + F TI +F +G + P A IP IL ++ +
Sbjct: 306 KGGMGLHLGIG-LGLSFSYILFQTITSTFAINGNVPPAIAVWIPNILYAGIAFYL 359
>gi|323525103|ref|YP_004227256.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
gi|323382105|gb|ADX54196.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
Length = 382
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/378 (15%), Positives = 111/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
I +++ + + + W++ +
Sbjct: 120 VIGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELRPDATI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N ++ D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 AKQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|254446878|ref|ZP_05060353.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198256303|gb|EDY80612.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 370
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/370 (14%), Positives = 125/370 (33%), Gaps = 15/370 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY F +LK L L+ + ++ + + + + + A P
Sbjct: 1 MFSVADRYVFTEWLKAFALVLSSMFGLLILFEIQDSFTDLVSY-DATGGQILFYYAILAP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P LV + L+R +E V RA G+S++++ + S+L+ +
Sbjct: 60 SFLTVTLPASILVSILYALGQLHRANEFVALRAAGMSVFRVTRSIWLASLLISGGLWYLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-------IIPWMQISNPQQDIFIGAKKILPEN 173
+ + + LI + + + + D + FI
Sbjct: 120 SSLIPWSVEQSNQLITTLRQDSEAKILDSDEIGVVEGLAFDNRRENRMWFINRYSEYKSQ 179
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL----- 228
+ + +++ L E +
Sbjct: 180 AFGISVSIMDEERREVRRVMARYGYFDEDLGYWTLFDGRERLNDPDTGRERWPPFERLDA 239
Query: 229 -NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
++ F ++ SF+++ + + + + E + L+ + +
Sbjct: 240 KDLTDDPTLMLLFGKRPKDLSFFQLRRITDSFTQEDNPNVLAYEVRLQALMASAASCLIV 299
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
IA ++ R+ P + V I F+ Y +++ +FG+ G L P AA IP++
Sbjct: 300 AGIAIPFAVSGVRT-NPAVGVTKSIGLFFVFYIFTSVLNAFGREGALSPEMAAWIPMVAM 358
Query: 348 ISLSILILLQ 357
I L+ +++ +
Sbjct: 359 ILLAYVLMRR 368
>gi|171463872|ref|YP_001797985.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193410|gb|ACB44371.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 386
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 67/376 (17%), Positives = 119/376 (31%), Gaps = 25/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I RY K + L + L D+ + Y++ + A + P
Sbjct: 6 PFIYERYLAKQIYAAFGFILFALVALFLFFDILSELGLV--QGTYTLPLALLHALLKAPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +IIP L+ +I VF L SE I R G+ + + L SI L T+++
Sbjct: 64 RISEIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLIALTKISIPLIALTLIMSE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---------IFIGAKKILPE 172
I E + + + + W++ +D ++ K+ +
Sbjct: 124 WIGPYTEAKSDQIRMKAMGSAYSSQFRTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVDKD 183
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---------- 222
N I D + + R L V E ++
Sbjct: 184 NEIRNIRMYEFDDTYHLLSIRSAVSGQFDETGVWVLNDVTETRFKETKQSDPLNPVFSAQ 243
Query: 223 ---KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ TL + S + + +S + N +R F+ +V
Sbjct: 244 TFTRPIVTLESEVTPQILSVLLISPEKMSIMSLGRFISHLRE-NKQDAHRHSIAFWKKVV 302
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P + M +A + R+ I V GI G ++ + G G +
Sbjct: 303 YPFTIFVMLTLALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGLLGSWPALIT 362
Query: 340 ALIPVILTISLSILIL 355
AL P +L L++ L
Sbjct: 363 ALTPPLLYFLLALAGL 378
>gi|153001631|ref|YP_001367312.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|151366249|gb|ABS09249.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
Length = 370
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 112/347 (32%), Gaps = 14/347 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ L V YQ D Q
Sbjct: 181 PDDETGVTNVVVAKGGRVQEDSTGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPVDELVKIEGAEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R + + + + ++ + + GI+ I
Sbjct: 294 VRQGKFAK-MFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHI 339
>gi|212636935|ref|YP_002313460.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
gi|212558419|gb|ACJ30873.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
Length = 371
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 114/347 (32%), Gaps = 14/347 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P +I
Sbjct: 2 IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNMPFLI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ IFT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYSENEMVILHGVGISEWYITRVTLLLAVVNMIFTGFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
E+ +++ + + N + +F+ D
Sbjct: 121 TPWAEERQNQVLEHAQSEAGIAALTQGRFQTSPNGRAVLFVERIGRDNKLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + +++L+ V+YQ +D Q
Sbjct: 181 PDDETGLANVVVARSGKVVEDATGGQRLQLEDGVQYQGSPRRVDYQVVEFGGYQMEIKDQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S I + M A +F++ + IPL + MTLIA ++
Sbjct: 241 EAGERRRKLSALPIDQLMDI-------DTPEATAEFHWRLAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+R + + I + ++ + + G++
Sbjct: 294 NRQGKFAK-MFPAILLYLGYFGLMVAGRKSLEDGVIPEFLGMWWIHA 339
>gi|260551089|ref|ZP_05825293.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
gi|260405856|gb|EEW99344.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
Length = 356
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 118/354 (33%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + +L + ++ P+Y+ + + P +
Sbjct: 6 IVAKYVTKTTALAMFGTTIVLSVLQVLFTYLGELGEL--KPDYNAWQAFIYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 64 YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + I + + DF
Sbjct: 124 VPYTNEKAQSIKS--HRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQVVDFDKEY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + I + + +L + ++ +
Sbjct: 182 HLQSVINAEQGKFIKDGQWSLQKASQTDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + ++ + + F+ + P L+ + L+A S R
Sbjct: 242 PEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + P L+P+IL +L +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLVPIILMFGAGSYLLYR 354
>gi|33861942|ref|NP_893503.1| putative permease [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33640310|emb|CAE19845.1| possible permease [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 400
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/373 (12%), Positives = 117/373 (31%), Gaps = 19/373 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ L L+ + ++ + + + + + +P +
Sbjct: 25 LIDRWLIAQILPPMLFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLAIKVLFFSLPSFL 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ +++GI +++ P + SIL+ T + +
Sbjct: 85 VLSFPMAVLLSTLLAYGKLSANSELLALKSLGIKTSRIIAPAIAVSILMTGLTFYFNDNL 144
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------------PQQDIFIGAKKIL 170
S K+ ++ + + M +
Sbjct: 145 VPSSNKLAESTLRAGIGSSFSSEEGKDNIMFSRYGSRIESATNKPTKTNTFLTHIFYASW 204
Query: 171 PENHIWEDFTS-ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNS 225
EN+I + T + + I + + + N + I
Sbjct: 205 FENNIMQGVTVLDFSRQDIQQILKAKSAVFDKENSSWIFSDGSIVSVDQGGQTTNIQFEK 264
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLML 284
+ + S + ++ ++ R + + +P
Sbjct: 265 YRYPFVEGPLDLARVPKDATEMSLKQALEAERIYKETGNLKEIRRIQVRIQEKFTLPFAC 324
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +S+ + + + + + Y + + SFG G+L P+ A +PV
Sbjct: 325 LVFGLIGSSLGSKSNLRSSKSQGFGLSVILILVYYVMSFVFSSFGVKGLLSPIIATWLPV 384
Query: 345 ILTISLSILILLQ 357
++++ I L +
Sbjct: 385 LISMGGGIYFLRK 397
>gi|317059424|ref|ZP_07923909.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685100|gb|EFS21935.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 362
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/363 (11%), Positives = 110/363 (30%), Gaps = 6/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +LK Y L + + + + ++ + S + + +P
Sbjct: 1 MMKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYV-NEGQLSPGQIPLFIGNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II + P L+ ++ + E++ + GI +L+ + S L+ + +
Sbjct: 60 GIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLN 119
Query: 121 NPIATSGEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + +L + ++ ++ + + + + E
Sbjct: 120 DRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--MDG 236
K + + + Y ++ + +
Sbjct: 180 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEY 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S + +KK + ++ P ++ + ++
Sbjct: 240 FISLSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGS 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + +
Sbjct: 300 HYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMR 358
Query: 357 QKE 359
+ E
Sbjct: 359 RAE 361
>gi|308272620|emb|CBX29224.1| hypothetical protein N47_J02050 [uncultured Desulfobacterium sp.]
Length = 356
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 126/362 (34%), Gaps = 10/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ I+ RY K LK + + + V+D + E + +++P
Sbjct: 2 LMSIIDRYLTKEILKYFCIIIAAIIGIYIVVDFFDETEIFFE-SGLAFPTAFFCFISKMP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I Q IP L+ +V F +++ +E+V ++ GISI+ LL P ++ + + +
Sbjct: 61 --IAQFIPLSVLLSILVTFGLMSKNNEIVAIKSGGISIYHLLRPILLIGSVFFCVVIFLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ Q I ++ +
Sbjct: 119 EAVVPITKSKAEKILTQANRKKFAMALKEK---DIWIKGHNLITHIEYYDSSKKTIHGIK 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGF 237
D K +++ R D + + L ++E + + + ++ D
Sbjct: 176 LYFFDDKFRVVRRIDCEKGVFNQGNWILYDIIEQKLDKNNSEISFHKQLIEHLVFSPDDI 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S S +E+ + + T FY + P + + M + ++
Sbjct: 236 GVVAVTSESMSAFELYDYIKKIESEG-YDATTYRTDFYAKLSFPFICIIMCFVGTGIAFR 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + YGI + F + S G+ GIL P AALIP ++ + I +L
Sbjct: 295 LGAKESLPVNIVYGIGAAFSYWVFFGFCISLGEGGILNPFFAALIPNLVFLGFGIFTVLN 354
Query: 358 KE 359
E
Sbjct: 355 TE 356
>gi|88810917|ref|ZP_01126173.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88791456|gb|EAR22567.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 367
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/345 (15%), Positives = 112/345 (32%), Gaps = 7/345 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
RY + + + L IDL E + G+ NY ++ +P
Sbjct: 8 MKTAERYLMRAVAGGFVVAAAVLLPLFSFIDLIEQLDDTGQ-GNYHSAQAFAYVGLILPR 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ V L EL R++G+S + + +LL + +
Sbjct: 67 RLIELGPFIALLGTTVALGGLASHRELTALRSVGVSPGGIALAALKAGVLLILLLAAIDQ 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + +S + + + +GA ++ E
Sbjct: 127 LVASPLQQHAFGMRATALSGDSNAESGSGAALWARRGDRLLRVGALRLGRIPADIE--IF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
+ + + + I + +L V+ + + S +
Sbjct: 185 HFNAEGHLVRYIHADYAEIHHRAPWRLNTVLVKAFMAGTPVTTRHASMVWQTFLTPAQIG 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S S ++ + + + + + +PL AM L+A S+
Sbjct: 245 LLEKPAESLSPVQLYGYVQYLRSTGQSSAV-YAVMLWQKLGLPLTAAAMILLAVPFSIGA 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R +A G +G +Y I+ + G L P AL P
Sbjct: 304 PRGASIGSRIALGAIAGLGVYLADQIIVNMGLLLDLSPPLIALGP 348
>gi|319793490|ref|YP_004155130.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
gi|315595953|gb|ADU37019.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
Length = 369
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/372 (14%), Positives = 122/372 (32%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRV 59
+ R + LK + LG + L F D + +G+ + Y + + V
Sbjct: 1 MKTIRRLIYVEALKAVAFVTLGFLCLFFFFDFVDELQSVGKPESLAYGPMQALIYVTLLV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L ++ + I T +
Sbjct: 61 PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVILTFAI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ IA E+ L++ + W++ + I + ++
Sbjct: 121 GDYIAPLSERT-GQLLKSRYQGTYSLVGNTGAWLKEKRDNVSYAVNVLSISRDGS-LKNA 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---------PIDKNSTTLNI 230
D + + A I + L + + Y +
Sbjct: 179 RIFEFDANGYVSKQLVVKSARILDGHWALADIEKQDYDTRSAADKARIVTTEIPQMDWPT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + S ++ + + + R E +F+ + PL + M ++
Sbjct: 239 SLTAEMVSVALLRPDRMSTIDLFDYIRHLDANGQ-TAQRYEIEFWRKVFYPLSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + R V G+ G + + + G P A P ++ +
Sbjct: 298 ALPFAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVM 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLTAFSWLVLRR 369
>gi|187250533|ref|YP_001875015.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
gi|186970693|gb|ACC97678.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
Length = 370
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 121/357 (33%), Gaps = 8/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL+RY + + + ILV + D E + + +P
Sbjct: 10 PKILYRYIASKFWMPFFFAMAMFCILVLLGDFFENIKSITN-GYATFRLILKYCFLNLPS 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ + V ++ E A G QL P + IL+ L+
Sbjct: 69 WLGMLLPVACLLAVLFVISDMVAGGEWTACLASGYRPGQLFVPLIACVILVVFLNSLMQE 128
Query: 122 PIATSGEKIGID-LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +Q + + D Q NP+Q + +
Sbjct: 129 FVYPRVSQKAEQVFRRQLRGDKDFQAGIERNITLRINPRQMLLAQTLQSGSLTMYGITTE 188
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDG 236
+ + + + K V + ++ ++ +
Sbjct: 189 FYNENWEIEKQIVARNLVWDKDEKIWFYKDGVIRYFEEGITIREEVFDTLESDLKVAPKD 248
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S E++KK+SF +S Y+ +T + + +P+M + M LI ++
Sbjct: 249 ISVGDIEEKAISVRELLKKISFLGRSG-LVTYKEKTNLHNKLAMPVMTIIMCLIGMPFAV 307
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + I + + F + ++T+ + G++GIL P A V+L + +
Sbjct: 308 TVRKRGKV-INIIAALVMSFSFWWVMTMASTAGQNGILSPFIAGWGIVVLAAAAVFI 363
>gi|119476402|ref|ZP_01616753.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
gi|119450266|gb|EAW31501.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
Length = 353
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 12/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY +TL L + L + + + + NY VP
Sbjct: 1 MNK-LGRYISTTITASTLLVLFMLLGLDAIAAIVDEMGYLS--GNYDFVAALRFVIYSVP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++PF LV + L SELV+ R+ G+S +++ + I++ I +LV
Sbjct: 58 ATMFDLLPFAALVGCLAGLGTLASGSELVVMRSAGVSTLRIVWMVMRPIIVVMIAGMLVS 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E I S W + +N + N I T
Sbjct: 118 EYVAPVTESIAKSERAIALKKSQNIVSREGLWHREAN-----RFMHFNAVQPNGILYGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D+++K A AI + + L+ VVE + K S + + +
Sbjct: 173 MYQFDEQHKPQSTLYAQRAIYQSGEWLLEDVVESIITDTRVRKIASPSKPWSTELSPELL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + ++ + + F+ I+ PL +A+ L+A S
Sbjct: 233 NILMLDPIDLSIAGNDQYANYLQAQGLNSSP-YRLAFWKKILQPLSTLALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + T I+ P+ A+LIP+++ L + L +
Sbjct: 292 PLREVTMGYRIFIGVLVGIVFRTAQDILAPASLVYGFQPIYASLIPIVICAVLGLWFLRR 351
>gi|218261075|ref|ZP_03476041.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
DSM 18315]
gi|218224239|gb|EEC96889.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
DSM 18315]
Length = 361
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 112/353 (31%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ + + ++ + T +
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFALNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I ID ++ N + E F
Sbjct: 126 IIPPANATRIDFQNKYIKNKKVDYVRSAQLEIEPGVIAYFDRYDARSGMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRLDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ + K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTSPELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASLSSRKIK- 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G L P AA IP IL ++I +
Sbjct: 303 GGMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYL 355
>gi|255020900|ref|ZP_05292956.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
gi|254969691|gb|EET27197.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
Length = 357
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 121/354 (34%), Gaps = 3/354 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
R F+ L + L + L+FV +L ++ + + + ++P
Sbjct: 1 MKRADRLLFRGMLGYSTLVLFVLLALMFVANLIAKSGG-PGHGSWDMGKLVTYISLQLPD 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IP L+ ++ LN SELV R G S+W+L P + + + T +
Sbjct: 60 LAYNLIPLALLLGALIWVSLLNSHSELVALRMSGWSLWRLQRPLLWVGLWGALLTFALGE 119
Query: 122 PIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +G + D W++ + I A + T
Sbjct: 120 WVVPYTAPAAEAIWANGGQGSGFQALPDGGVWLRQGDQLIQIRAIAADGRRLEGLRIVIT 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++D +++ ++A ++ V + ++ + + F
Sbjct: 180 TPSLDAVTRMLDAREALYRDGAWQLQGVQSHVLGAQRIVSTTLVQQPWDVRLDPGTLRSF 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + + + + S + R F+ + P + + M + + R
Sbjct: 240 SHPTRTMTLPALWESYQNLQGS-VLSMNRFALAFWKRVTYPWVGLVMIWLVVPLVTRNPR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ G+ G + + + SG + PV A + P+ L S++ +
Sbjct: 299 GGGLAGRILMGLVLGLAFHFLTEMSGFISISGGIPPVFATVFPLALFASIAWGL 352
>gi|170077642|ref|YP_001734280.1| YjgP/YjgQ permease superfamily [Synechococcus sp. PCC 7002]
gi|169885311|gb|ACA99024.1| putative permease, YjgP/YjgQ family superfamily [Synechococcus sp.
PCC 7002]
Length = 378
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/369 (13%), Positives = 111/369 (30%), Gaps = 15/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L+ L L I + + + + + A R+P +
Sbjct: 10 LLDRYIMAQLVGPFLFGLGIFTSLGLTIGVLFEVMRNVVANEITWAIAFQILALRLPEFL 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL+ + + +L+ SE++ R++G+ +L+ P ++ +L+ T + + I
Sbjct: 70 VLGLPMATLLGTLTAYSSLSSFSEIIALRSVGLPPLRLMLPGLLLGLLITGITFGLNDWI 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN--------PQQDIFIGAKKILPENHI 175
K + + + + + + +
Sbjct: 130 VPQTTKQASTIANIAQGEATIDYQEKNIIYPEYQRVKTATGNREILKTLFYAETFDGTQM 189
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLNI 230
+ I A ++ YQ + LN+
Sbjct: 190 NNLTILDRAAVDTQRIITAAAAQWNANEQGWLVQDGSIYQIGANGSFSDIEQFETNFLNL 249
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTL 289
++ + I + S R + + +P + + +
Sbjct: 250 SDAPLILATRCQRPNEMTLQVIDVCLESLKLSRNERRIRTLQVRKQEKFSVPFVCIVFAM 309
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +++ L ++ V + F Y I I S G G + P P +L +
Sbjct: 310 VGSAIGLRPQ-NSSRATSVGLSVAIVFAYYLISVISSSMGVWGTITPFMGTWFPNLLGLV 368
Query: 350 LSILILLQK 358
+ IL +
Sbjct: 369 AAGTILWRT 377
>gi|319778586|ref|YP_004129499.1| Permease-like protein [Taylorella equigenitalis MCE9]
gi|317108610|gb|ADU91356.1| Permease-like protein [Taylorella equigenitalis MCE9]
Length = 384
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/349 (15%), Positives = 119/349 (34%), Gaps = 20/349 (5%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ E +++ E+ Y++ L A ++P + I+P L+ ++V NL + +E
Sbjct: 27 FTFFETIEEFDKINEI--YTVWVMLALQAFQLPTRLYDILPIGLLIGSVVALANLAQRNE 84
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
LVI R G+S +LL ++ + + L+ I ++ + Q +
Sbjct: 85 LVILRVSGLSSRKLLFMLWWIALPIIVLATLLSEVITPWADQKVSAINMAVLGKKSNQLN 144
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+ + + I + + I N+ A+ + N++++
Sbjct: 145 SGYWFREPVSSNTYRVINLTNLKNDGEIENIKVFEYSSIDNQFKRLLSAETGTLENNELE 204
Query: 208 LKKVVEYQ-----------------YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
L VV+ L + D + S
Sbjct: 205 LTNVVQTVSLVDINKILNDEHDPVLKVSNSNKLEKIKLKTSLTQDRLLATELKPDRMSTL 264
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+++ + + + N + + + + P L+ M +A + +R +
Sbjct: 265 KLLDYIDYLKE-NQLEHNKHVVALWRKLSYPFALIVMITLATPLGFIQTRKGGVGAKIFI 323
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
GI G + + + + + G L A +P I+ + L+I L E
Sbjct: 324 GILLGIVFFMVNQLSLNMGMLSKLPAWITATLPNIIAMILAIYALYMIE 372
>gi|315122194|ref|YP_004062683.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495596|gb|ADR52195.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 321
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 216/322 (67%), Positives = 270/322 (83%), Gaps = 1/322 (0%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
M ELP YS SRGA+L+ TR+PLIIQQ IPFI+L+V+++VFFNLNRT+ELVI+RA+G+SIW
Sbjct: 1 MSELPGYSTSRGAMLSVTRLPLIIQQTIPFISLIVSMIVFFNLNRTNELVITRAVGVSIW 60
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QLL+PF GS LLG+FT+LVINP+A SGEK+GI ++ W+ D++ +IIPW+ I N +
Sbjct: 61 QLLSPFTTGSFLLGMFTILVINPMAVSGEKMGISMVNNWRT-HDQKTLEIIPWIHIENKK 119
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+D FIGAKKILPE +I EDFT IT++K+N I R+DA AI+ + + LK+VVEY+YG +
Sbjct: 120 EDFFIGAKKILPEKNILEDFTFITVNKENDTIFRQDAHFAIVQKNNIYLKEVVEYKYGAL 179
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P+ KNST LNI IKM+ FQKF+EQF S SFYEIIKK+ FS++S++F NY +ETQFYF+I
Sbjct: 180 PVFKNSTILNIAIKMNYFQKFTEQFTSHSFYEIIKKVIFSHQSSVFRNYFSETQFYFMIS 239
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
IP MLVAMTLIAA+VSLEF+RSNQPRIIV YG+ +GFMLYTIIT+MKSFGKSGILLP AA
Sbjct: 240 IPFMLVAMTLIAAAVSLEFNRSNQPRIIVTYGVCAGFMLYTIITLMKSFGKSGILLPFAA 299
Query: 340 ALIPVILTISLSILILLQKEDG 361
ALIP+I I LSI ILL+KEDG
Sbjct: 300 ALIPIISIICLSIFILLKKEDG 321
>gi|171059278|ref|YP_001791627.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
gi|170776723|gb|ACB34862.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
Length = 368
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/363 (15%), Positives = 113/363 (31%), Gaps = 15/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ R ++ L T Y ++ + L F ID +G+ Y ++ A+ +VP +
Sbjct: 3 TIRRLLYREILGATGYVMVAFLGLFFFIDFMAELENIGQ-HGYGAAQAALACLLQVPGHV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ P L+ I L +SE I R G+ L + T ++ + +
Sbjct: 62 YELAPIAVLIGAIYALARLAHSSEFTILRTGGLGPGLALLLLTWLGLGFAAITFVIGDFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----NPQQDIFIGAKKILPENHIWEDF 179
A + L + +G+ + W++ S + + + + + +
Sbjct: 122 APWCDTQATLLQA--RASGNLSVASGGAWLKDSASAADGEHRYTVNFAAARSDGELEKVR 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPI 232
K I I + +L V + S +
Sbjct: 180 IFEFGPKGALITRTTAERAVIGDDGTWQLTDVRISHWTSDHTPRLDADEKLASHVWQSGL 239
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S + M+ R E QF+ + P + M +A
Sbjct: 240 TRNVVAAAVLPLRTMSTLALYNYMTHLADH-EQAAQRYEIQFWKKALYPFACLVMMGLAL 298
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS ++V GI G + + G P AA P + + LS+
Sbjct: 299 PFAYLHGRSGGIGLMVFGGIMLGIGFVLLNNLSSHLGLLQNWTPWLAASAPSAIFLLLSL 358
Query: 353 LIL 355
Sbjct: 359 AAF 361
>gi|91788271|ref|YP_549223.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
gi|91697496|gb|ABE44325.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
Length = 381
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/384 (15%), Positives = 127/384 (33%), Gaps = 30/384 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS-------ISRGAVL 54
+ R + L LG + L F DL + +G+ S I +
Sbjct: 1 MRTIRRLIYGEVLTAIALVALGFLALFFFFDLVDELQYLGKNNGLSAAADIYQIRHALLY 60
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
A +P + +++P L+ I V L ++SE I R G+ W+ L +V
Sbjct: 61 VALLIPNHLYELLPISVLIGTIFVMARLAQSSEYTILRTSGLGPWRALRLLLVLGAAFVT 120
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ V + +A + E+ L +++ W++ P + K++ P N
Sbjct: 121 LSFAVGDYVAPTSERAAQLLKARYQSK--ITVGQTGAWLKEKQPYNSYVVNVKELTPNNE 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----------------GR 218
+ +K + + D LK+ ++
Sbjct: 179 MKGVQIFEFDNKGLIVSTTQAPVAQFTGGDAWMLKQASRAEFDVPASPADISKPQNGARV 238
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ I + + S ++ + N + R E +F+ +
Sbjct: 239 SRTTLQTFRWPTEISAEMVSVALLKPERMSTLDLFNYVRHLNANGQ-TAQRYEIEFWKKV 297
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL + M ++A + RS V G+ G + + + G P
Sbjct: 298 FYPLSCLVMVMLALPFAYLHFRSGGIASYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWL 357
Query: 339 AALIPVILTISLSI----LILLQK 358
AA P ++ +++S+ ++L++
Sbjct: 358 AAATPGLMYMAVSLGAFGWLVLRR 381
>gi|312888277|ref|ZP_07747853.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
gi|311299111|gb|EFQ76204.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
Length = 362
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 60/343 (17%), Positives = 115/343 (33%), Gaps = 4/343 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I Y K YL T ++ + ++++ V D++E + + A +P
Sbjct: 7 KIFDWYIIKKYLGTFVFTIAIFIVVIVVFDVSEKLDNFLKNNVSLKEIIFEYYAGSIPFY 66
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + P I + I + +E+V + G S + L P+ + + L+ I ++L
Sbjct: 67 IDMLSPLINFLAVIFFTAKMANQTEIVPVLSSGASFNRFLRPYFICASLIFIVSLLADIY 126
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K+ I + D KSD+ + E F
Sbjct: 127 LIPFTNKLKITFENAYVVLEDPTKSDVHIKLDEHTFVYMQSFDNASKTGYQFTLEKFDGD 186
Query: 183 TIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +K D+ + + + V + + +K T L+ + F +
Sbjct: 187 VLKQKLTANKIVYDSLKRVWSIQQFDTRYVNGLREKMVHGEKKDTVLD--MVPADFVLHN 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ S E+ + + Y V P+ +TLI S+S R
Sbjct: 245 NIYSAMSRKELDNNIKKEEYRGTGVINDMLIEKYKRFVHPMASFVLTLIGVSLSSRKVR- 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + G F F + F G L P+ A IP
Sbjct: 304 GGVGLPLGIGFFLCFAYIVVDQFAVVFSLKGGLPPIIAVFIPN 346
>gi|239616611|ref|YP_002939933.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
gi|239505442|gb|ACR78929.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
Length = 1466
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 122/357 (34%), Gaps = 5/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y FK + L G + + ++L + + I + +L +P
Sbjct: 1 MRILIKYIFKQSMGAFFIGLGGFL-IFVSLELLYQLSDLIVRYKVGIDKLFLLIYYNLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I IP L+ + +EL+ + GI++ ++ PFV+ ++LL T L +
Sbjct: 60 FIVLGIPVGVLLAIFWTLSRMQSDNELIALQTHGITLKTVVLPFVIFAVLLSGITYLFND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + ++ + +M+ + E +
Sbjct: 120 YIVPYANRKAYEAQARFIYRRPEVTLKENAFMEDGKGRYLYIKKIDPETGELKKILLYDL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ ++ + + S L+ + + + S
Sbjct: 180 SGGKTRVTSAKSATKEGDKWIMHDGRVFELDSKGFLTFDMSFESLELDFGSDIQEYIRQS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ KK++ ++ + + + L + + +I +SL F+
Sbjct: 240 KSPREMTSAELKKKIASFSRLGVRTSSLM-VALQEKYSLSLAPLVIVMIGVPLSLIFNLR 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI--LILL 356
++ ++ I + + + GK +L P A IP I+ I +L+
Sbjct: 299 SKSWSVILTFILI-VIYQGSGAWLSAMGKEDLLNPAYAPWIPNIIFAITGIITYLLI 354
>gi|299530037|ref|ZP_07043464.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
gi|298722017|gb|EFI62947.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
Length = 367
Score = 114 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 123/370 (33%), Gaps = 16/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVP 60
+L ++ ++ LY L + L F DL + +G Y+ +R + +P
Sbjct: 1 MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V ++SE I R G+ W L +V + + TVLV
Sbjct: 61 GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLVLGMSFVVLTVLVG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA + + L G + W++ + I +
Sbjct: 121 DYIAPAADNFSQKLR--VVAKGQISRGATGAWLKEKQGNHSVAINVGAVKAPGDFVNVRI 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--------KNSTTLNIPI 232
K + + ++ K V+ D + S +
Sbjct: 179 FEFDSKGRIAAQINAQSAQVDEDKELWTLKGVQGSKVAQEGDVTKLSRISEASMNWPTKV 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + + + + E +F+ + PL + M ++A
Sbjct: 239 TAAMVSGALLKPDRMTTIALFQFVRHLQDNGQA-AQKYEIEFWRKVFYPLSCLVMVVLAL 297
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 298 PFAYLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSL 357
Query: 353 ----LILLQK 358
++L++
Sbjct: 358 SAFGWLVLRR 367
>gi|317486218|ref|ZP_07945052.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922517|gb|EFV43769.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 357
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/365 (17%), Positives = 133/365 (36%), Gaps = 15/365 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L+RY K L L + L + DL E + E S+ ++PL
Sbjct: 1 MSLLFRYLTKNNAMILLPTLAVGIGLYVLTDLFERLDNFIE-AGLSVGMVLTYFVVKMPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I QI+P I L+ ++ + R+ EL +A GIS+ + N ++ I G +
Sbjct: 60 VISQILPVIFLLSTVIQLCIMARSRELTALQAGGISLGVVANSMILCGIFWGGVQLGFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +GE+ + Q+ + + + D + + P+ H
Sbjct: 120 YLGVAGERESARIWQEEVRKKNLAAT---VLKDVWFTDGDWIVSLGTLDPQAHGTGFSGY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKF 240
D I A + L+ V Y ++ L + + F+
Sbjct: 177 ELSDDGLSIKRIVQASTFTAEPNHWALQDVRVYTPDTFTQEQEPDFVLPLRQDPETFRLV 236
Query: 241 SE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + +++ +S S + T ++ + ++ M +A ++
Sbjct: 237 STGTKPQQLPLWQLGDAISQLKSSGS-NVEALRTAWHAKLAYAASILVMAFVATAIV--- 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL----I 354
S + I V + F+ + + T+ + G+ GIL P AA ++ + + +
Sbjct: 293 SWKDNIYIAVTVALLCTFLYFAVYTLGTTLGQRGILHPFLAAWTANLIALFFAFWRLIPL 352
Query: 355 LLQKE 359
LL++E
Sbjct: 353 LLRRE 357
>gi|237718555|ref|ZP_04549036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293373071|ref|ZP_06619439.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|299145713|ref|ZP_07038781.1| putative membrane protein [Bacteroides sp. 3_1_23]
gi|229452015|gb|EEO57806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292631957|gb|EFF50567.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|298516204|gb|EFI40085.1| putative membrane protein [Bacteroides sp. 3_1_23]
Length = 365
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 8 KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G ++ ++ + + S I + N D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D ++ + V E + I K + I ++ F
Sbjct: 188 KKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + E+ + + + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPELSDYIVKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G + P A IP IL ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIAFFL 359
>gi|258405421|ref|YP_003198163.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
gi|257797648|gb|ACV68585.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
Length = 358
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 120/356 (33%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L L L + + +ID+ + + + + A ++PLI+
Sbjct: 3 TLHRYLLRQNLYYLLLSLGAGIGIYLLIDIFDRLDDFVGAQ-AGVEATVLYFAAKIPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P + L+ + + R EL A GI + +L F+V ++ + +
Sbjct: 62 SQVLPAVFLLSLLAQLSIMRRQQELTALEAGGIPLSRLAVFFLVYAVFWSGLQLGFSEGL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G++ + +Q + W + + + + I
Sbjct: 122 GVVGQRKSEAIWEQDVHGHAPSQRTLRDVWFKSEHFVVHMHRVTPRQKTGRKITVYVMDE 181
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ I + ++ + + + D+ L +
Sbjct: 182 DFSRIRTIHRAERFQQQTDSWVLSEVTSLKPHAFTTSAQDRLPLPLQQDLADFLAVDPKA 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S S +++ +S +S + R T ++ + LV M L+A + S
Sbjct: 242 EPESLSLWQLGHLISELRQSGS-NVERLATTWHMKLAYGFSLVVMALLALGIVSA---SG 297
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+ F+ Y + + + G+ GI+ P + ++ L L+
Sbjct: 298 NIYVNIPIGLTVIFVYYALFVLGGTLGEKGIVSPWIGGWLGNMVWGGAGALRLVWI 353
>gi|315917902|ref|ZP_07914142.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691777|gb|EFS28612.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 362
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/363 (11%), Positives = 110/363 (30%), Gaps = 6/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +LK Y L + + + + ++ + S + + +P
Sbjct: 1 MMKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYV-NEGQLSPGQIPLFIGNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II + P L+ ++ + E++ + GI +L+ + S L+ + +
Sbjct: 60 GIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLN 119
Query: 121 NPIATSGEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + +L + ++ ++ + + + + E
Sbjct: 120 DRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--MDG 236
K + + + Y ++ + +
Sbjct: 180 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEY 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S + +KK + ++ P ++ + ++
Sbjct: 240 FISLSNIIPKQKTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGS 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + +
Sbjct: 300 HYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMR 358
Query: 357 QKE 359
+ E
Sbjct: 359 RAE 361
>gi|255013990|ref|ZP_05286116.1| hypothetical protein B2_08777 [Bacteroides sp. 2_1_7]
Length = 361
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 114/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I + ID ++ N + E F
Sbjct: 126 IIPPANETRIDFQNKYIRNKKVDYVKNAQLEIEPGVIAYFDSYDARSNMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 304 GMGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|154492560|ref|ZP_02032186.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
43184]
gi|154087785|gb|EDN86830.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
43184]
Length = 361
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 113/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ + + ++ + T ++
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFVLNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I ID ++ N + E F
Sbjct: 126 IIPPANATRIDFQNKYIKNKKVDYVRSAQLEIEPGVIAYFDRYDARSGMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRMDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ + K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTSSELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASLSSRKIK- 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G L P AA IP IL ++I +
Sbjct: 303 GGMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYL 355
>gi|170725439|ref|YP_001759465.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
gi|169810786|gb|ACA85370.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
Length = 370
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 115/347 (33%), Gaps = 14/347 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + + + + S L +P +
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLAIFISQHFVRVLANASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + SE+VI ++G+S W + ++ +++ + T ++ +
Sbjct: 61 VLVLPLSFFLGILMAHGRMYAESEMVILHSVGVSEWYITRVTLLLAVINMLITGVLAVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
E+ +++ + + N + +F+ D
Sbjct: 121 TPWAEERQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +++L+ V+YQ +D Q
Sbjct: 181 PEAEQGQSNIVLAQGGKVIEDETGGQRLQLRDGVQYQGTPKQVDFQVIEFGGYQMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +E+ S I + M ++ +F++ + IPL + +TLIA ++
Sbjct: 241 EVNERRRKLSALPIEELMKQEG-------PESKAEFHWRLAIPLSIPLLTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R + + I + ++ + + GI+ +
Sbjct: 294 VRQGKFAK-MFPAILLYLGYFGLMIAGRKALEDGIIPGYLGMWWIHL 339
>gi|82524032|emb|CAI78710.1| hypothetical protein [uncultured Flavobacteriaceae bacterium]
Length = 358
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/355 (14%), Positives = 110/355 (30%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T LL + + ++L E +M E + +
Sbjct: 1 MKILDWYILKRYLFTFFMMLLLFIPIGITVNLAEKIGKMLE-NEVPLKAIVIFYLNFTVH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + G+S + L P+++G+ ++G + +
Sbjct: 60 FAYLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFSRFLRPYMIGASIIGGLALFLGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFT 180
+ K + ++ K D+ + QI++ + + + +
Sbjct: 120 YLTPIASKGFNEFEYKYLYPNRKTTQDVNVFRQINDNEFIYVSSFDLNNKLGINFTLEHI 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
V K + + + + ++
Sbjct: 180 EDNKLTYKISAKTIKYIAKDTTYRLVDYVKRTVGKIEDELVFERNKDTLFAFDVEDLTPV 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ E+ K + + R E Y +P+ + +T+IA +VS R
Sbjct: 240 IYIAEILPYTELTKFIEKEKTRGSSNIGRYELVLYRKWSLPVSVFILTIIAVAVS-SIKR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +A GI + I + + A P ++ L+ +L
Sbjct: 299 RGGMGVNLAIGICIAMVFVFFDKIFGVLAEQSNFPSIIAVWFPNVVFGILAFYLL 353
>gi|262068069|ref|ZP_06027681.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
gi|291378155|gb|EFE85673.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
Length = 363
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/364 (13%), Positives = 113/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLEGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N I T + + + K+ + +N +G +
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNNDGYIYLMGNINRETGLAEKVEI 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--- 236
+ + +K L V + +
Sbjct: 180 VVYDTEISKPVEIITAQSGKYDKENKKWLLSGVNIYNVETKKSITKVEYDSDRFGEDPNN 239
Query: 237 -FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + ++ P + I SVS
Sbjct: 240 FIRAAAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLSELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + I + + +G+ Y + ++ +GIL P ++ IP IL + + +
Sbjct: 299 SKYVRGGRTTINLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|150007422|ref|YP_001302165.1| hypothetical protein BDI_0773 [Parabacteroides distasonis ATCC
8503]
gi|256839671|ref|ZP_05545180.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298375396|ref|ZP_06985353.1| membrane protein [Bacteroides sp. 3_1_19]
gi|149935846|gb|ABR42543.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256738601|gb|EEU51926.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298267896|gb|EFI09552.1| membrane protein [Bacteroides sp. 3_1_19]
Length = 361
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 114/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I + ID ++ N + E F
Sbjct: 126 IIPPANETRIDFQNKYIRNKKVDYVKNAQLEIEPGVIAYFDSYDARSNMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHISQGSRKDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 304 GMGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|92115033|ref|YP_574961.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
gi|91798123|gb|ABE60262.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
Length = 386
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 112/360 (31%), Gaps = 15/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + + S L +P +
Sbjct: 28 IVFRYLTREILATMAAVAGVLLLVIMGSRFIRYFGDAAQ-GDIPASILGTLMLYHLPGFM 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ F L SE+ + A GIS +LL + ++L+ + L +
Sbjct: 87 ELVLPLSFFLGILLAFGQLYLNSEITVLVACGISPNRLLRVTLWPALLVALLVALCSLWL 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--GAKKILPENHIWEDFTS 181
+G + ++++ K D + + + + + E+ +
Sbjct: 147 TPNGARHNEMVLEEQKSRLDFSVLQPGRFQEFGSGRTAYTESLNDDRSRMESVFISERQP 206
Query: 182 ITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ R D + +D + L Y +
Sbjct: 207 RSDGTPETVVTRADGGYQTVDDDTGSRFLVLTDGERYSVEPGNHVAERVQFDTYAVRLSQ 266
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + A + + +PLM+ +TL+A +S
Sbjct: 267 ASERVDLQAAELTSTPQLLERGG-------SEAWANLQWRLSMPLMVPILTLLALPLSRV 319
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + IF +++ + G L P + + L + + +
Sbjct: 320 NPRQGRFAK-LLPAIFLHISYLSLLLAAQDAIARGSLAPTIGMWPIHLGYLLLGVWMTRR 378
>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 354
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 73/360 (20%), Positives = 141/360 (39%), Gaps = 8/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY F L+ + LL M+L VID + + I+ G + R+P
Sbjct: 1 MVKRLDRYVFIETLRYFVLTLLTFMVLFIVIDFVSKMDTFLKSG---IADGFLYVIYRLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L ++IP TL+ +V N + ++EL + +A+GIS+++ P + + L I + L+
Sbjct: 58 LYTVRVIPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + K+N + S W + E F
Sbjct: 118 ELVVPKSISLSKSIYYKVKENKNFHVSGKSIWFKKDEKTFVFMEYVNPAKSEAKRISIFF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
K I +D KLK E + + K + +N+ I
Sbjct: 178 LGKEFSPTK--RIDALYGINIKDDIWKLKNCFERKLKELKTTKISEKEINLGIGKKDLIF 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + K + ++ + Y + I L+ + + +I + +
Sbjct: 236 TQIETETMSSFLLYKVIKQLKRAG-YDTTGYLVDLYSKLAISLLPLVVAVIGIPLGVFNP 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R+ + +V FM + I+ S GKSG+L P +A P ++ +S+ +L+L + +
Sbjct: 295 RNKKGYTLVIAAALIVFM-WITISFFSSLGKSGVLPPFYSAFAPEVMFLSIGLLLLARMD 353
>gi|153004269|ref|YP_001378594.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152027842|gb|ABS25610.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 360
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 125/360 (34%), Gaps = 9/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+ Y + L + L G + + +D + L + +++
Sbjct: 2 ILFGYVARRTLNAFVGALAGVVAIFLAVDFVDNSAAFTGPGWAPA--VLELYVNKAAVVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+ P ++ + RT E RA+G+ W+L P V ++L G +LV +
Sbjct: 60 RQVAPAAMILGAGIAVSTFRRTREYTAMRAVGLGPWRLAVPVVAVTLLAGGALLLVHDLW 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDI--IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ G ++ + + + + T
Sbjct: 120 GVEAAQRAEEIQALRFGRGGDRRRFEAAREPKRWFRGGDGRRVYHLRGTSPEGGFAHVTV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGF 237
+ + + +++ R DA+ D+ L+ V + + + S + P D F
Sbjct: 180 LEVSEAFRLVRRVDAERMRPEGDRWLLEHVEDRTFLPDGTVRVERAASRRYDFPEPPDAF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ ++ + + + + Y + P V ++A +++L
Sbjct: 240 AVVPGRPTQMRWQTLLSQIGIRRRLGLP-VAELQLERYNRLAYPFAGVPGAMLALALALR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R + + + + + + G SG + P AA P ++ + + L + +
Sbjct: 299 RNRKGHIAAALVESVGVSLLFWGTQGVTWAMGLSGHVAPWVAAWAPNLVFLVVGALAVRR 358
>gi|329907054|ref|ZP_08274546.1| putative Membrane protein; putative permease [Oxalobacteraceae
bacterium IMCC9480]
gi|327547111|gb|EGF31985.1| putative Membrane protein; putative permease [Oxalobacteraceae
bacterium IMCC9480]
Length = 378
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 62/377 (16%), Positives = 118/377 (31%), Gaps = 24/377 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +YF K L+ L+ LL + L DL +G Y I + A +P
Sbjct: 3 VLQKYFGKEILRAVLFVLLAFLALFAFFDLINELPAVG-RGGYKIQHAFLYIALGLPGYT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +I V + SE I R G+S Q ++ + T L I
Sbjct: 62 YELMPIAALIGSIYVLAQMASNSEFTIMRVSGLSTRQAGFMLAKIGLIFVLITFLFGEVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT--- 180
+ + L QQ + K+ W + + + + + +
Sbjct: 122 SPLTAERAERLKQQAQGTTSKEF-RSGLWTKDQIRDGSGAMIGSRFVNVGELLPNGQLKD 180
Query: 181 ---SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------------- 224
+ + + + L V ++ +
Sbjct: 181 VKLYEFDSELRLTSMVTASTADFQGDRRWLLSDVATTRFALTVFNLAVLPDAPSGIATTT 240
Query: 225 --STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ L I D S ++ N R + F+ I+ P
Sbjct: 241 APTRELISDITPDILSVTFADPDRMSALDLATYTRHL-AENRQVTERYDIAFWKKIIYPF 299
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ M +A + +RS + + GI G I ++ G P+A A+
Sbjct: 300 AVFVMMALALPFAYLHARSGGVSLKIFMGIMIGVSFKLINSLFSHIGLLNTWPPLATAIA 359
Query: 343 PVILTISLSILILLQKE 359
P +L ++ ++ L E
Sbjct: 360 PSLLFLAGALGALWWVE 376
>gi|296114025|ref|YP_003627963.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|295921719|gb|ADG62070.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|326566094|gb|EGE16251.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC1]
gi|326572162|gb|EGE22158.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC7]
gi|326573712|gb|EGE23670.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis O35E]
Length = 369
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 129/368 (35%), Gaps = 18/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISET--YTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ + ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVVISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + W + + E + E
Sbjct: 123 LPTANQHAAAIRADTIYDKLITID--GYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQL 180
Query: 184 IDKK-------------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
D + + +A A + ++ L +
Sbjct: 181 KDGQLITALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTL 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
PI +++ S + R E F+ ++ P ++++ L+
Sbjct: 241 PIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL-RHELAFWQKLLSPFAVLSLVLV 299
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A+S RS + V + +G + + + + L P+ AL+P++L+
Sbjct: 300 ASSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLSAMA 359
Query: 351 SILILLQK 358
+ +L +K
Sbjct: 360 GMYLLNRK 367
>gi|332299879|ref|YP_004441800.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
gi|332176942|gb|AEE12632.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 361
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 131/354 (37%), Gaps = 9/354 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 8 TVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G +I ID ++ + ++ I + F+ E+ + F+
Sbjct: 128 IPPGNRIRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ K+ + +L+ +G N IPI F
Sbjct: 184 FEGKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFLVT 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S ++ + + + + I + +TL+ S+S R
Sbjct: 244 EGDVEMLSTPQLYRSIQQQRMRGAATQL-YAIELHKRIAMIPASFILTLMGVSLSAR-KR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 302 KGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|332885188|gb|EGK05439.1| hypothetical protein HMPREF9456_02640 [Dysgonomonas mossii DSM
22836]
Length = 365
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 121/359 (33%), Gaps = 13/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K +L T ++ ++ + + V D+NE ++ + VP
Sbjct: 6 ILDKYIIKKFLGTYIFSIILIISISVVFDINERLDKFLSNNAPLKAIVFDYYMNFVPYYT 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I L SE++ + G+S +L+ P+++ + ++ + + ++ + I
Sbjct: 66 NLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVGSFILSSFI 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I ++ + + I I K ++ D
Sbjct: 126 IPPANETRIKFQNKYIKDKSVDYASRIQMQVDKGVILYIERFDNKTRLGYNLSLDKFEGK 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
K + R + D A L ++ + + + + F
Sbjct: 186 ELKSRLVASRIEYDTAY----HWVLNNYSIREFHGMKEKITTGTRIDTTLNVIPSDFLVS 241
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFH-----NYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F S ++ + + + + + E +F+ +T+I AS+S
Sbjct: 242 VNDFEQMSTPKLYSYIQRQKEKGLANVGGVSITQFEIEFHKRFASVFSAFILTIIGASLS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ T+ SF SG + P+ A IP I+ + ++ +
Sbjct: 302 ARKMK-GGMGLNIGIGLGLSVTYIMFQTVSSSFAVSGTMPPMLAVWIPNIVFMFIAAYL 359
>gi|328954009|ref|YP_004371343.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
gi|328454333|gb|AEB10162.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
Length = 372
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 122/358 (34%), Gaps = 9/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + + + L + + +ID E +++ ++PL
Sbjct: 15 PRLLMLYVAREFCRNFFLTLAAFVGIYLIIDFFEKIDRL-HRAQLGFVGILEYFGAKLPL 73
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P L+ I+ F L R +E + G++I LL P ++ + +L +F + +
Sbjct: 74 ATGQVLPASVLLAVIITFGILARHNETTAIKCAGLNITILLRPILLLASVLVLFLLSLNL 133
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + D ++ + W+ + + E+
Sbjct: 134 FLTPWLTQRVNIIWETKVDKKPARELIDLKWLW--YKGDRAIFHISEFRKDTKSMENVKI 191
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGF 237
D++ + A A + + + T+ + + + F
Sbjct: 192 YVFDQQFHLTQFIAAQRAQWTGQNWRFSDGMIQTFLPQGEIVSEAFVERTMILTERPEDF 251
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + Y++ + + + + + + + I L + +TLI +
Sbjct: 252 VNLERRVTELNGYDLYRYIRRLERDG-YDSRPYWVELHSRIAFALTPIIVTLIGGGLIF- 309
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + GI F+ + + T S G+ + + AA + I+ L L
Sbjct: 310 WREKGNISLGIVSGIALVFIYWLLSTFFLSLGQVRFMPVLLAAWLANIIFGLGGFLAL 367
>gi|262382043|ref|ZP_06075181.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297220|gb|EEY85150.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 361
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 114/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I + ID ++ N + E F
Sbjct: 126 IIPPANETRIDFQNKYIRNKKVDYVKNAQLEIEPGIIAYFDSYDARSNMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 304 GMGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|158337152|ref|YP_001518327.1| permease YjgP/YjgQ [Acaryochloris marina MBIC11017]
gi|158307393|gb|ABW29010.1| permease YjgP/YjgQ, putative [Acaryochloris marina MBIC11017]
Length = 390
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 116/358 (32%), Gaps = 7/358 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY F+ L L+ ++ + + I+ + ++P +
Sbjct: 17 DRYLFRQLLPPFLWGMVAFSSIGVSAAVLFDLLGQVSEARLPIAIALSILTLQLPYFVSL 76
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP L+ ++ L EL+ ++ G+ + +L+ + S+L +F + +
Sbjct: 77 AIPMSVLLACLLTLSRLQSDGELLALQSAGLHLNRLIGSCLGFSLLACLFMFGLTESLVP 136
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ L++Q G P Q++ + T I
Sbjct: 137 VSQAHSHHLLRQTLQAGQFSLQGRHIVYPDIGPNQELRRLFYAQTGQGQTLSGITVIDWT 196
Query: 186 -KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP----IKMDGFQKF 240
N+ + + + K Y G +K+ +
Sbjct: 197 LPNNQQVLIAQSATWNAERNIWIFKDGSIYAIGTDGAEKHIIEFSKQELQLPPQLSLTDS 256
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAE-TQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++ ++ RA Q + I +P ++ L+ +++ +
Sbjct: 257 DINPNGVTLAQSQQLLTKLRQTGRPTQIRALAIQIHRKIALPFTVIIFGLVGSTLGIS-Q 315
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + Y +I I ++G+ GI+ P A P ++T + + +LL+
Sbjct: 316 RRLAVSNGFGISLILVLGQYILIFIADAWGQLGIISPWFGAWTPNLVTGLIGVSLLLR 373
>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 382
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/360 (11%), Positives = 112/360 (31%), Gaps = 8/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ + L L +++ + + ++ + +++ + +P
Sbjct: 1 MKRTLYLSIIREITSLFLLGLGIFTLVLLMGRMIKLTEMVISR-GVALADMGRMIICLMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ + +A GIS+ Q++ P ++ +++ +
Sbjct: 60 SFLVYTIPMAFLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKILPENHIWEDF 179
G + + W I ++ + + +
Sbjct: 120 VVGVPWGNRAFAAMSFDMLSQNVSSTIREKVFWDDIPGIVLYTDHYDEERHTLSGVVIND 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MD 235
D + + + +
Sbjct: 180 ERNASRPLTIFASSGLVAGGANPRDVRLILRSGSIHAQGRGGEYRLIHFAEYVMNIAAPG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
G + + E+ + ++ S + + T+ + +P + ++A +
Sbjct: 240 GTDTVTRAPREMTVTELHRSIA-SPSTQPKLRKKMATEMHSRFALPFASLVFAVLAVPLG 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ RS + A I Y +++++ + + G A IP ++ + L ++L
Sbjct: 299 LQNRRSAR-SFGFAISIGVLLAYYILLSLLGTMAEKGSFPAPLALWIPNMVFLVLGWVLL 357
>gi|217077925|ref|YP_002335643.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
gi|217037780|gb|ACJ76302.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
Length = 1110
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 122/354 (34%), Gaps = 3/354 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K L L + + + ++L + + I + L +P
Sbjct: 1 MKVLTKYILKLSLGPFLMGIGAFI-VFASVELLYQLSDIIVRHRVGILKLFELIYYNLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP L V L + E+ GI +L+ PF++ SI+ G + + +
Sbjct: 60 FASLGIPVGILFSIFWVLSQLYSSKEITAFLVHGIPSRKLVYPFLILSIIFGAVSFYLND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + ++ I ++ + +I Q + + F +
Sbjct: 120 QIVPKFNQKAMETISKYVYKKPEVTIKENVLTKIDESQYFFVKRYDQQQGILYDVVLFQN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +++ + + + Y K+ + ++ + + L++ ++ +
Sbjct: 180 MQSEERIITAKKVEKEENSWYLINGKMYVTDRDGFMKLDLSFSKIKLDLKDDLESLMRVG 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+I+K+ K + + + + + ++ +SL F
Sbjct: 240 KSPRDMTGEELIQKIKTFKKLGV-DPSPWIVELHGRYANSVGPFIIVILGVPLSLLFGLK 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ ++ + + + + GK ++ PV AA P +L + ++
Sbjct: 299 SKSWSVIFTFVIV-VLYQGSGAWLSAMGKENLINPVLAAWYPDLLFAIVGFILF 351
>gi|30248806|ref|NP_840876.1| hypothetical protein NE0802 [Nitrosomonas europaea ATCC 19718]
gi|30180401|emb|CAD84713.1| putative membrane protein [Nitrosomonas europaea ATCC 19718]
Length = 355
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 115/360 (31%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY L + + L DL + + +G+ Y+ + +P
Sbjct: 1 MKICHRYIAWQVLTGMVIATAILLPLFSFFDLLDQLDDVGK-GTYTTWDAFLYTVMLMPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
QI PFI L+ + L ELV R G+S + V LL T+ +
Sbjct: 60 RFIQIAPFIALLGTVGALGALAVNLELVAMRVAGLSPLMIGLAPVGIGGLLIASTIALEY 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ L + G + + W + I K +
Sbjct: 120 FVAPQFQQQATILRAVALEQGAELGKGLGIWTRNERNILRIGEMLHKGRATD----IEVI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
+ + H I KL V + I + + D
Sbjct: 176 HFDGEGSMTAHVHAWYADIFDESLWKLHDVTIRTFSPDRITSRKAHILQWHSFLGPDDIA 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ S + E++K F + + + + +M +AM L+A
Sbjct: 236 TLTKSPESLTPIELVKHAEFLRATGQKADA-YVMALWRKVGGAIMTIAMILVAIPFIFGS 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + G +Y I+ + G L P+ +++P ++ I+++ LL++
Sbjct: 295 VREG-LGGKLILAALMGISIYLFDQIIANIGLVFQLNPIVVSVVPGMVLIAVAAHWLLRR 353
>gi|120434961|ref|YP_860647.1| hypothetical protein GFO_0597 [Gramella forsetii KT0803]
gi|117577111|emb|CAL65580.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 341
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 120/340 (35%), Gaps = 3/340 (0%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L+ + + ++L E +++ E A + P + I
Sbjct: 1 MMLVLFIPIGITVNLAEKIDKILE-NEVPFIEVAYYYLDFTIYFANLLFPIFLFLSVIWF 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +E+V + G+S ++ L P+++G+ ++ I +++ +A K + Q+
Sbjct: 60 TSKLAMNTEIVAFLSSGVSFYRFLRPYLIGATIVCISALVLAMYLAPQASKGFNEFKYQY 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
G++ + + QI++ + + + + K KI
Sbjct: 120 LKRGEQTQETSDVYRQINDNEYIYASHFQPKSKSARNFTLEHFEGNELKFKISASNLRYS 179
Query: 199 AIIYNDKVKLKKVVEY-QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
K+ + + S +P + D S + ++ E+ + +
Sbjct: 180 EEDSLYKLSRVDKRIIGKEEDSIMFMRSLDTILPFEFDELTPESYIAETLNYTELNEFIE 239
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + R Y IP+ +T+IA +V+ F R + +A GI F+
Sbjct: 240 KERRRGSGNINRYLVVAYKRWSIPISAFILTIIAVAVA-SFKRRGGMGVNLAVGITLAFI 298
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + P+ A P I+ L++++L +
Sbjct: 299 FIFFDKVFGTMAEQSTFSPLIAVWFPNIVFGVLAVVLLFR 338
>gi|50083533|ref|YP_045043.1| hypothetical protein ACIAD0255 [Acinetobacter sp. ADP1]
gi|49529509|emb|CAG67221.1| conserved hypothetical protein; putative permease [Acinetobacter
sp. ADP1]
Length = 356
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 117/354 (33%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ K L + +IL + + + +YS + + P +
Sbjct: 6 IVAKHVTKTTALAMLGTTIVLVILQVLFTYLGELSNL--KADYSAWQAFLYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ I+ L SEL++ R++GIS+W+++ + +++L + + + +
Sbjct: 64 YEILPISALIGAILGLGTLASNSELIVMRSVGISLWRIVGWVIRSALVLVLLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + + + + DF
Sbjct: 124 VPYTNERANSVKS--HQSVAALGEVRGYWSREGQRFIYVDYANSQGQLKRIQVVDFDDNY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + + + ++ Q + + ++ ++ +
Sbjct: 182 RLKSVTNAEQGQFVKDGQWLLNHSQQMAIQGQGDAVLANAAKQPFSLALQPKYVHMVTID 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
SF +++ M++ + + + F+ + P L+ + L+A S R
Sbjct: 242 PEDLSFSQLVSFMNYMREYSQVPKT-YQLAFWKKVASPFALITLVLVACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + P L P++L +L +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYNPSPAWFVLGPIVLMFVAGSYLLYR 354
>gi|189461313|ref|ZP_03010098.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
gi|189431842|gb|EDV00827.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
Length = 378
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 121/353 (34%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY +L T + + + + V D+NE + + +P
Sbjct: 21 KRLDRYIIVKFLGTYFFAIALIISIAVVFDVNENIDHFINNKAPLKAIVFDYYLNFIPYY 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S +L+ P+++ + ++ T ++
Sbjct: 81 TNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIISAVTFVLGTE 140
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +G + +++K + I S + H D
Sbjct: 141 VIPTGSVTRLKFEERYKKKKSADYARNIQLEVDSGVVAYMERYDAYSKSGYHFSLDKFED 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ R D + + ++ + E + R I + + I ++ F
Sbjct: 201 HKLVSHLTARRATYDTTMYHRWIIRDYMIREMRGMREYITRGDRLDSIIKMEPQDFLITR 260
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + ++ + +S + + E +++ I + +T I S+S +
Sbjct: 261 GQQETMTSPQLKEYISKQKQRGFANIKEFEVEYHRRIAMSFAAFILTSIGLSLSSRKVKG 320
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F TI +F +G ++P A IP IL + ++I +
Sbjct: 321 GMGLHLGIG-LGLSFSYILFQTISSTFAINGNMMPAIAVWIPNILYLFIAIYL 372
>gi|258593792|emb|CBE70133.1| putative Inner membrane protein yjgQ [NC10 bacterium 'Dutch
sediment']
Length = 362
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 118/358 (32%), Gaps = 11/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ R+ + ++ + + + ++ L + +G Y++ + +P +
Sbjct: 10 TIDRHIWFRVIRGYALVMAVLLSVFSLMALVNELDSVG-RGTYTLGDAFLNVILTIPSRM 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ P ++ +I+ L + EL+ + +G S ++ V ILL I + V I
Sbjct: 69 IELAPTTAVLGSIIGLGELASSHELIAMQTLGTSPLRIGASVTVTGILLMIAVIGVQEWI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A S +++ Q + + W + ++ + I +
Sbjct: 129 APSADQLAYMRRIQAISKPEALHTRQGFWSRDGRQFIRVYQ-----VLPGRILSNVEIYE 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK-LKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQK 239
D +++ A A L VV+ S + + +
Sbjct: 184 FDDNHRLRLVTWAARAEPEGSHRWVLIDVVQRMVDGGGVASKQLASLSWAGSLTPTQAEL 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + ++F K+ R E + + + +PL + M L+A L
Sbjct: 244 LVLPAEILSRSTLSQYIAFLKKTGQ-DVARLEIRLWQQMTMPLSTLMMVLVAIPFVLGPL 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +G G + + G L L P+ + +++ + +
Sbjct: 303 RKATAGKRILHGSLIGAAFHLGSHFIAHLGAILHLNAALTVLSPLAVLGGVTVWVYRR 360
>gi|15644481|ref|NP_229533.1| hypothetical protein TM1735 [Thermotoga maritima MSB8]
gi|4982312|gb|AAD36800.1|AE001812_10 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 1074
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 126/359 (35%), Gaps = 14/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 15 KVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 73
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 74 VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 133
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + +I + Q + + ++
Sbjct: 134 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFY------VEKYDERTSTMWNV 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDGF 237
I + A + L Y + ++ + + L+I ++
Sbjct: 188 VIFRYGHEETIVTAKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKL 247
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 248 LRVGKTPKEMTGKELKEKIEFFKKVGVKPSP-WVVELHSRYANSLTPIVIVLVGVPLSLL 306
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F ++ ++ + + + + GK +L PV A IP I+ + L+ +
Sbjct: 307 FQLRSKSWGVIFTFVLV-VLYQGSGAWLSAMGKENLLNPVLAPWIPNIVFTIVGTLLFI 364
>gi|297184152|gb|ADI20271.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 374
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/373 (11%), Positives = 114/373 (30%), Gaps = 26/373 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY ++ + ++ + + V D++E + + + +
Sbjct: 1 MNK-LDRYILLKFIGSFFLTMVLILSIAVVFDISEKLDDFQNGASMN-EIIFDYYINFIA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + I + SE+V G S +LL P+ +G+ ++ ++ +
Sbjct: 59 FYGNLFSALILFISTIWFTSRMASNSEIVAILTSGTSFRRLLRPYFIGASIICALSLTLN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + I +++ ++ S M ++
Sbjct: 119 HLLVPQTNIKRIAFEEKYVTGVNRPISQK---MHRQVLPGHYVYFETFSGVRESGYQMTY 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM----DG 236
+ D + K D + +L ++ S + + +
Sbjct: 176 EVFEDHQLKSKLSADFVRLDTATGRWRLDNFRLRTLDEKGGEQISFGRRMDTALAFTSEQ 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
A+ + E+ + ++ + + + + P+ L+A ++
Sbjct: 236 IAPKLNSIATMNSKELSRFIAQEELTGNENIASYQMEMQRRTSYPVSSYVFVLLAVGLAS 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----------------LPVAAA 340
+ R I +A G+ + + + ++F K+G+L A
Sbjct: 296 QKKR-GGLGINIAIGLVLTAIYIFFMQLSETFAKTGLLSSEGLLGGPLEWIGIQPAEFAV 354
Query: 341 LIPVILTISLSIL 353
IP I+ +++
Sbjct: 355 WIPNIVFAIIALW 367
>gi|78779866|ref|YP_397978.1| putative permease [Prochlorococcus marinus str. MIT 9312]
gi|78713365|gb|ABB50542.1| permease-like protein [Prochlorococcus marinus str. MIT 9312]
Length = 400
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/370 (12%), Positives = 111/370 (30%), Gaps = 18/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + L+ + ++ + + + + + +P +
Sbjct: 25 LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPVLKALQALIYSLPSFL 84
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SEL+ R++GI +++ P + SI + T + +
Sbjct: 85 VLSFPMAVLLSTLLSYGKLSANSELLALRSLGIKTSRIIAPAIAVSIFMTGLTFYFNDNL 144
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------------PQQDIFIGAKKIL 170
+ K+ ++ + ++ + I
Sbjct: 145 VPNSNKLAELTLRSGVGSSFNREKSKNNIIFSRKGSRIDTNNKPTKTNTFLTHIFYASRF 204
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNST 226
N + E K I + + N + I+
Sbjct: 205 ENNTMREVTVLDFSRVNIKQILTAKSAVFDKKNSSWVFADGSIVSTDSTGQTTSINFKQY 264
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLV 285
+ + + S E ++ K R + + +P +
Sbjct: 265 LYPFVEGPLDLARVPKDASDMSLKEALEAERIYKKIGDLKQIRKIQVRIQEKFTLPCACL 324
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
LI + + + + + + M Y I I SFG G+L P+ AA PVI
Sbjct: 325 VFGLIGSILGSQSNLRSSKSQGFGLSVILILMYYVISFICSSFGVKGLLPPIIAAWFPVI 384
Query: 346 LTISLSILIL 355
+++S L
Sbjct: 385 ISLSGGFYFL 394
>gi|126661397|ref|ZP_01732459.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
gi|126617328|gb|EAZ88135.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
Length = 353
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/347 (12%), Positives = 109/347 (31%), Gaps = 16/347 (4%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+L I N + + + + +VP +P ++ ++ + L+
Sbjct: 4 VLGVAIGYLSDLADKVVDSNLPLMQASEILLLKVPEFTAYALPISVMLSTLLTYGRLSND 63
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
SEL+ R+ G+S+++L+ P +V S+ + T L+ + + ++ ++
Sbjct: 64 SELIAFRSCGVSLYRLIIPAMVMSLAVTGVTFLMSELVVPAANYRATAILVEYLQEDHPY 123
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH---------RKDA 196
+ + +K L E F + + D+
Sbjct: 124 WQNKDIFYPDYEQVTLPNGDQEKRLKHLFFAEQFDGQHLKTLTVLEWLEERLNRIVVSDS 183
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-----DGFQKFSEQFASRSFYE 251
+ YQ K + F + +
Sbjct: 184 ATWNGQEETWDFFNGTIYQLSSDASYKEAYPFEHRQLPLTKAAFEFALQGRDPYEMNIIQ 243
Query: 252 IIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ M R + + + P + V ++ +++ + ++
Sbjct: 244 ARQYMKILKMMGDDKKLRMFQVRIQQKLAFPFICVVFGVVGSALGATPQQMSR-ATGFGL 302
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ F Y + ++ S G G++ PV A +P +L +++ +L +
Sbjct: 303 SVVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPNLLGLAMGGWLLYR 349
>gi|148270164|ref|YP_001244624.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
gi|281412494|ref|YP_003346573.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
gi|147735708|gb|ABQ47048.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
gi|281373597|gb|ADA67159.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
Length = 1061
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 126/360 (35%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 1 MKVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 60 FVAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + +I + Q + + +
Sbjct: 120 QIVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFY------VEKYDERTSTMWN 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDG 236
+ I + A + L Y + ++ + + L+I ++
Sbjct: 174 VVIFRYGHEETIITAKRVQKKGNDWYLFNGNYYTVDKDGFLKLDVHFSEMKLDITEDIEK 233
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 234 LLRVGKTPREMTGRELKEKIEFFKKVGVKPSP-WVVELHSRYANSLTPIVIVLVGVPLSL 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F ++ ++ + + + + GK +L PV A IP I+ + L+ +
Sbjct: 293 LFQLRSKSWGVIFTFVLV-VLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFI 351
>gi|33862844|ref|NP_894404.1| putative permease [Prochlorococcus marinus str. MIT 9313]
gi|33634760|emb|CAE20746.1| possible permease [Prochlorococcus marinus str. MIT 9313]
Length = 403
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 39/367 (10%), Positives = 110/367 (29%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + L+ + ++ + + + + + + ++P +
Sbjct: 32 LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SE R++G+S +++ P + ++L+ T + + I
Sbjct: 92 VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
I++ + +
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGAEAEDWNQGLSQLFYAREFLKG 211
Query: 184 IDKK----------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLN 229
+ + + + + + ++ +
Sbjct: 212 EMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPRGSTTSVEFDRYLYP 271
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ K + + + + ++ S + R + + P+ +
Sbjct: 272 LTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLVFG 331
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ + + + YT+ S G +G L P+ AA IPV +++
Sbjct: 332 LIGSSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAWIPVFISL 391
Query: 349 SLSILIL 355
+ L+L
Sbjct: 392 AGGGLLL 398
>gi|297171743|gb|ADI22735.1| predicted permeases [uncultured verrucomicrobium HF0500_27H16]
Length = 412
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 115/364 (31%), Gaps = 12/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R+ +LK+ + L ++ +L + + E + P ++
Sbjct: 49 ITDRHLASEWLKSFGITTGAILGLFYIQNLYDNLGDLLE-HGAGAAEILQYYLILTPALL 107
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P LV + + +L+R E+ R++G S+W L+ + + LL + L+ N
Sbjct: 108 SPVLPLSVLVATLFSYGSLHRNQEITAMRSMGRSVWSLMRVNMFLAALLSVGLFLLGNGG 167
Query: 124 ---ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + Q + + I + N + P H
Sbjct: 168 LSKSAEKSREFYEELMQPPFDPASAEVATIKHLTFENASSHRLWVMNRYDPSKHKGHGVY 227
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-------PIDKNSTTLNIPIK 233
K R + A + Q +D +
Sbjct: 228 LYLRYVSGKARERFTSRTAEFMPETATWVFREGRQVFFDEAGLSLRFVDFEELKMEGLES 287
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + S E+ + S R +++ + P + L+
Sbjct: 288 PLTLLARQKKLSDLSLRELRELAEVSQGGQGSEARRYGVRYHQALAGPFNCMLALLVGVP 347
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R N + I + + + G+ GIL P A +P+ L ++
Sbjct: 348 FAIAGTRVNPM-VGATKAIGIFVGYFLLGGASRMLGQQGILEPAVAGWLPMGLMAFYALF 406
Query: 354 ILLQ 357
++ +
Sbjct: 407 LIGR 410
>gi|326565139|gb|EGE15330.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 103P14B1]
gi|326572842|gb|EGE22827.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis CO72]
gi|326574664|gb|EGE24600.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 101P30B1]
Length = 369
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 128/368 (34%), Gaps = 18/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISET--YTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + W + + E + E
Sbjct: 123 LPTANQYATAIRADTIYDKLITID--GYWSVNHDGDSQDVVYISYADNEGGLGEVKRYQL 180
Query: 184 IDKK-------------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
D + + +A A + ++ L +
Sbjct: 181 KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTL 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
PI +++ S + R E F+ ++ P ++++ L+
Sbjct: 241 PIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL-RHELAFWQKLLSPFAVLSLVLV 299
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A+S RS + V + +G + + + + L P+ AL+P++L+
Sbjct: 300 ASSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLSAMA 359
Query: 351 SILILLQK 358
+ +L +K
Sbjct: 360 GMYLLNRK 367
>gi|169797502|ref|YP_001715295.1| hypothetical protein ABAYE3538 [Acinetobacter baumannii AYE]
gi|184156574|ref|YP_001844913.1| permease [Acinetobacter baumannii ACICU]
gi|213155684|ref|YP_002317729.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|215484938|ref|YP_002327177.1| hypothetical protein ABBFA_003301 [Acinetobacter baumannii
AB307-0294]
gi|239502070|ref|ZP_04661380.1| hypothetical protein AbauAB_07127 [Acinetobacter baumannii AB900]
gi|260556394|ref|ZP_05828613.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|301346543|ref|ZP_07227284.1| hypothetical protein AbauAB0_09866 [Acinetobacter baumannii AB056]
gi|301512955|ref|ZP_07238192.1| hypothetical protein AbauAB05_15269 [Acinetobacter baumannii AB058]
gi|301594833|ref|ZP_07239841.1| hypothetical protein AbauAB059_03452 [Acinetobacter baumannii
AB059]
gi|332851502|ref|ZP_08433499.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332866798|ref|ZP_08437202.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332874942|ref|ZP_08442793.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
gi|169150429|emb|CAM88326.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|183208168|gb|ACC55566.1| predicted permease [Acinetobacter baumannii ACICU]
gi|193076100|gb|ABO10704.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|213054844|gb|ACJ39746.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|213988459|gb|ACJ58758.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260410449|gb|EEX03748.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|322506461|gb|ADX01915.1| permease [Acinetobacter baumannii 1656-2]
gi|323516340|gb|ADX90721.1| permease [Acinetobacter baumannii TCDC-AB0715]
gi|332729955|gb|EGJ61286.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332734406|gb|EGJ65526.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332736885|gb|EGJ67861.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
Length = 356
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 117/354 (33%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + +L + ++ P+Y+ + + P +
Sbjct: 6 IVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGEL--KPDYNAWQAFIYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 64 YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + I + + DF
Sbjct: 124 VPYTNEKAQSVKS--HRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQVVDFNKDY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + I + + +L + ++ +
Sbjct: 182 HLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + ++ + + F+ + P L+ + L+A S R
Sbjct: 242 PEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + P L+P+IL +L +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLYR 354
>gi|124023382|ref|YP_001017689.1| permease [Prochlorococcus marinus str. MIT 9303]
gi|123963668|gb|ABM78424.1| possible permease [Prochlorococcus marinus str. MIT 9303]
Length = 403
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 38/367 (10%), Positives = 112/367 (30%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ + L+ + ++ + + + + + + ++P +
Sbjct: 32 LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SE R++G+S +++ P + ++L+ T + + I
Sbjct: 92 VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
I++ + + +
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGTKAEDRNQGLSQLFYAREFLKG 211
Query: 184 IDKKNKI----------IHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLN 229
+ + + + + + + ++ +
Sbjct: 212 EMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPSGSTTSVEFDRYLYP 271
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+ K + + + + ++ S + R + + P+ +
Sbjct: 272 LTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLVFG 331
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +S+ + + + YT+ S G +G L P+ AA +PV +++
Sbjct: 332 LIGSSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAWVPVFISL 391
Query: 349 SLSILIL 355
+ L+L
Sbjct: 392 AGGGLLL 398
>gi|160898976|ref|YP_001564558.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
gi|160364560|gb|ABX36173.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
Length = 369
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 55/372 (14%), Positives = 119/372 (31%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRV 59
+L ++ + Y L + L F DL + +G Y I+ + R+
Sbjct: 1 MRVLRNLLYRDIIAAVGYVTLAFLALFFFFDLVDELRWVGRGGDNGYQITHALLFVVLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V ++SE I R G+ W L +V + + T
Sbjct: 61 PSHLYELMPITVLIGTIYVMARFAQSSEFTIMRTSGMGPWLALRTLMVLGLGFVLATFGT 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +A + E G ++ + W++ I I + I
Sbjct: 121 GDYLAPAAENAGQNIRAIHLAQ--LSRGATGAWLKERQGDHSIAINVRAIRGPGDFSNVR 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---------YGRIPIDKNSTTLNI 230
+ + + + + VE + ++S
Sbjct: 179 IFDFDGQGRISAQIHAQAAQVSEDGESWTLQGVEASRLKAKADAGMVLLREKEDSLVWKT 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I + + S + + + + + E +F+ + P+ + M ++
Sbjct: 239 GISAEMVSAALLKPDRMSTISLFQYVRHLEANGQA-AQKYEIEFWRKVFYPMSCLVMVVL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + RS V G+ +G + + + G P A P +L L
Sbjct: 298 ALPFAYLHFRSGGIAAYVFGGVMAGISFFLLNNVFGYIGTLQTWSPWLTAAAPGLLYSLL 357
Query: 351 SI----LILLQK 358
S+ ++L++
Sbjct: 358 SLTAFTWLVLRR 369
>gi|170288881|ref|YP_001739119.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
gi|170176384|gb|ACB09436.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
Length = 1061
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 126/360 (35%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 1 MKVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 60 FVAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + +I + Q + + +
Sbjct: 120 QIVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFY------VEKYDERTSTMWN 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDG 236
+ I + A + L Y + ++ + + L+I ++
Sbjct: 174 VVIFRYGHEETIVTAKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEK 233
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 234 LLRVGKTPREMTGRELKEKIEFFKKVGVKPSP-WVVELHSRYANSLTPIVIVLVGVPLSL 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F ++ ++ + + + + GK +L PV A IP I+ + L+ +
Sbjct: 293 LFQLRSKSWGVIFTFVLV-VLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFI 351
>gi|313887034|ref|ZP_07820734.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923560|gb|EFR34369.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 361
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 59/354 (16%), Positives = 131/354 (37%), Gaps = 9/354 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 8 TVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G +I ID ++ + ++ I + F+ E+ + F+
Sbjct: 128 IPPGNRIRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ K+ + +L+ +G N IPI F
Sbjct: 184 FEGKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFLVT 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ ++ + + + + I + +TL+ S+S R
Sbjct: 244 EGDVEMLTTPQLYRSIQQQRMRGAATQL-YAIELHKRIAMIPASFILTLMGVSLSAR-KR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 302 KGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|237740742|ref|ZP_04571223.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422759|gb|EEO37806.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 363
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 117/363 (32%), Gaps = 5/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPTTKENAFFINNTDGYIYLMGNINRETGNAEKIEI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDG 236
T K I + N K L V Y + +
Sbjct: 180 VVYDTEISKPVEIITAQSGKYDKDNKKWMLSGVNIYNVETKKNITKVEYDSDRFREDPNN 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + + + +KK K+ + P + I SVS
Sbjct: 240 FIRAAAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSVSS 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ R + + + + +G+ Y + ++ +GIL P ++ IP IL + + +
Sbjct: 300 KYVRGGRTTLNLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMYFMN 359
Query: 357 QKE 359
+ E
Sbjct: 360 RAE 362
>gi|169634641|ref|YP_001708377.1| hypothetical protein ABSDF3306 [Acinetobacter baumannii SDF]
gi|169153433|emb|CAP02575.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
Length = 356
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 118/354 (33%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + +L + ++ P+Y+ + + P +
Sbjct: 6 IVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGEL--KPDYNAWQAFIYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 64 YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + I + + DF
Sbjct: 124 VPYTNEKAQSVKS--HRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQVVDFNKDY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + I + + +L + ++ +
Sbjct: 182 HLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + ++ + + F+ + P L+ + L+A S R +
Sbjct: 242 PEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPLRQHS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + P L+P+IL +L +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLYR 354
>gi|294782105|ref|ZP_06747431.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
gi|294480746|gb|EFG28521.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
Length = 363
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/364 (12%), Positives = 112/364 (30%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLEGGEIFDYIVNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N I T + + + K+ + + +G +
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNTDGYIYLMGNINRETGEAEKIEI 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--- 236
+ + ++K L V + +
Sbjct: 180 VIYDTEISKPVEIITAQSGKYDKDNKKWLLSGVNIYNVETKKTITKVAYDSDRFGEDPNN 239
Query: 237 -FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I SVS
Sbjct: 240 FIRAAAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P ++ IP IL + + +
Sbjct: 299 SKYVRGGRTTLNLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|83596032|gb|ABC25390.1| predicted permease YjgP/YjgQ family superfamily [uncultured marine
bacterium Ant39E11]
Length = 359
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 109/353 (30%), Gaps = 2/353 (0%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +L F+ M++ V D+++ + + + +
Sbjct: 5 DRYILSKFLGNFALFMGLIMLIAMVFDVSQKLDDFMDNDLNLATILLDYYLNFIAFYGNT 64
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I + + + E+ G+S +L+ P+++G+ ++ + + + + I
Sbjct: 65 FSALILFLSTVFFTARMANQGEISAMLTGGLSFGRLMRPYLIGAAVICLASASLSHFIIP 124
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
I + + + + + + + + + + +
Sbjct: 125 GTNSSRIAFEEAYIQHRVTSRPIHLHRQVLPGHFIYVETWSPDRMGGYNFTYEHFEQGRM 184
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQF 244
D A G + + + F +
Sbjct: 185 VDRLKASFIKYDSAKTSWHMDNWTLRQWQSNGHMSLTSGVRLDSSFAFLPQQFSSNNRGI 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + E+ K + S E ++Y PL + LIAA+++ R
Sbjct: 245 ETMTSPELYKALKQVRLSGSEAVLFYEMEWYRRSAYPLSAFILVLIAAAMASRSQR-GGI 303
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ + ++ + + + + P+ A +P IL + +++L +
Sbjct: 304 GAQIALGLLVAVLYIFLMQLSSTLASTHVTSPLVAVWVPNILFLGVAMLAYRR 356
>gi|197105523|ref|YP_002130900.1| hypothetical protein PHZ_c2060 [Phenylobacterium zucineum HLK1]
gi|196478943|gb|ACG78471.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 351
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 126/358 (35%), Gaps = 13/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y F+ L L + ++ ++DL ++ ++ + A A R+P +++
Sbjct: 3 LGLYLFRLAFGRILAALAVLVGILQILDLLDVTTEILDR-ELGAQGVAYYALLRLPRLVE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L ++ F L S + R+ GIS +++ + + L+ +++ +A
Sbjct: 62 QAAPLAVLAGSLFAFAKLAGESAVTAMRSTGISAYRITLLALPAAALVAAAQLVIGMAVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ Q + + D+I + + + + +
Sbjct: 122 PRTDAALTRWWQATTPREEVKPQDVITFRVGDDIVSA------RPSADAQRMSEVVIYRR 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFS 241
D +++ R AD A+ +L + S T ++ +
Sbjct: 176 DGAGRLVQRTAADAAVYDQGAWRLIAPRFEAISEGEVQTGAAESMTWTRSLRPADVRALQ 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ S E + + ++ +TQ + P + M L+AA +L R
Sbjct: 236 SGGSTISAAEARRAL--HGGVSVRPKTYYDTQLHRAWAAPAACLVMLLLAAPAALANFRG 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++V + +G + + G+SG + AA ++ +L + LL E
Sbjct: 294 GGTTLMV-QCLAAGLLFLVFDGAFTALGESGAAPAMLAAWGAPVIFGALGVTALLYLE 350
>gi|296327425|ref|ZP_06869972.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155438|gb|EFG96208.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 363
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 117/364 (32%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ + + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
T K K I + +K V Y + + L +
Sbjct: 180 VKFNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKTEYKSNLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I SVS
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ +P IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWVPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|71901306|ref|ZP_00683403.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71728926|gb|EAO31060.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 385
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 26 DRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 84
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S + ++ + VL +
Sbjct: 85 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRSSLSVMMMIGMGTGLMVLTGETLGP 144
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 145 WAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 204
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ ++ A + D L++V + + + + +
Sbjct: 205 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRLDPAALA 264
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 265 AGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAIPFSFGL 323
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS GI + + + L L+P ++ + S + ++
Sbjct: 324 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQ 383
>gi|327402663|ref|YP_004343501.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
gi|327318171|gb|AEA42663.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
Length = 373
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 117/368 (31%), Gaps = 15/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + +L T + L M+L V D+ E + E + +
Sbjct: 1 MLKILDRYIIRKFLSTFFFMLGIIMLLAMVFDIAERLSDFIEKQASFKAIVFDYYLNFLL 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + I + + +E++ G +++ P+++ + +L + ++++
Sbjct: 61 YYGNTFSSMIVFIAVIWFTAKMAQDAEIIPMLFSGRPFIRIIRPYMIAATILMLLSLVLN 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--------- 171
+ + ++ +D + + + ++ + + + ++
Sbjct: 121 HFVLPRANRVRLDFEESFYRDRLLVENYNAEFPGNELVHYSTYNSEENMINDFVIERYDS 180
Query: 172 -----ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ I K+ ++ + ++ ++ + +
Sbjct: 181 QNRLIHFMKARTASVIPGVKRWRLTDVFERKVSYSDTSGTSKGEMESIIQKHQLTENHLK 240
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+P +D + +F E+ ++ E + Y P
Sbjct: 241 DTTLPYNVDDIAVRDNVVEAMTFRELSSFIAKEKAKGNPSVAMYEIELYQRSSYPFATYV 300
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+TLI SVS R I + F+ + I + VAA +P ++
Sbjct: 301 LTLIGVSVSSRKKRGGIGINIAIG-LLFVFIYIFAMKITTVAATTVGFPSVAAVWLPNVM 359
Query: 347 TISLSILI 354
L++ +
Sbjct: 360 FGILALFL 367
>gi|254303141|ref|ZP_04970499.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323333|gb|EDK88583.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 363
Score = 112 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 115/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDETLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
K K I + +K Y + L +
Sbjct: 180 VKFENEISKPKEIITAKSAKFDTEENKWIFSNANIYNVDTKETVTKTEYKSNLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I SVS
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|294785396|ref|ZP_06750684.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
gi|294487110|gb|EFG34472.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
Length = 363
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 115/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + DK V Y + L +
Sbjct: 180 VKFETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I S S
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSAS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|71899265|ref|ZP_00681427.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71730998|gb|EAO33067.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 385
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 26 DRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 84
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L ++ + L +
Sbjct: 85 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMALTGETLGP 144
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 145 WAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 204
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ ++ A + D L++V + + + + +
Sbjct: 205 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRLDPAALA 264
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 265 AGLAKPRNLSVHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAIPFSFGL 323
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS GI + + + L L+P ++ + S + ++
Sbjct: 324 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQ 383
>gi|66044344|ref|YP_234185.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|63255051|gb|AAY36147.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|330969233|gb|EGH69299.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 353
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 124/361 (34%), Gaps = 14/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILV-FVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M L RY K L L L + LV + + + + Y+++
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVS-LFAFIDEMGDISDT--YTLADALSYVMLTA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV
Sbjct: 57 PRRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E + +GD Q + W + + I + N +
Sbjct: 117 GEYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDG 236
T D + + A A D +LK V + + +T ++ +
Sbjct: 172 TRYRFDDQRHMQTSSFAKEANFKTDYWELKDVTTTHFNDGRTEVINTPVERWDVALSPQL 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 232 LSTVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF I ++ P+ A L+P +L+L
Sbjct: 291 GPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLR 350
Query: 357 Q 357
+
Sbjct: 351 R 351
>gi|114798132|ref|YP_760297.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114738306|gb|ABI76431.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 351
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 11/359 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY +L+ L + + L+ V+D +++ R+P
Sbjct: 1 MTSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKL--PAGAGFEGQMRYMWLRLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +I+ F L+ ++ + +L R +ELV A GIS++ + + L + +I
Sbjct: 59 ALFDRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFII 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + + + + D + + T
Sbjct: 119 DTVGPPASRSLLAWL-------GPEALQEDAQVPEELWLSDGKFLIELKSMQAEELTGIT 171
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + ++ A+ A + L + ++ P + T P + Q
Sbjct: 172 IFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEPP-TDMTFWTSPQTPESLQLL 230
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +I +S S + E ++PL V L+A V + R
Sbjct: 231 LSPPRDLAISNLIA-LSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGR 289
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ I VA G+ GF + I+K+ ++G + P+ A +P++ S+ + L++E
Sbjct: 290 RSNADIAVAAGVAVGFFYMVVDGILKTLAENGSISPILAVALPILALFLGSMWLALERE 348
>gi|257452882|ref|ZP_05618181.1| hypothetical protein F3_07434 [Fusobacterium sp. 3_1_5R]
Length = 361
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/362 (11%), Positives = 109/362 (30%), Gaps = 6/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +LK Y L + + + + ++ + S + + +P
Sbjct: 1 MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYV-NEGQLSPGQIPLFIGNLLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II + P L+ ++ + E++ + GI +L+ + S L+ + + +
Sbjct: 60 IIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLND 119
Query: 122 PIATSGEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +L + ++ ++ + + + + E
Sbjct: 120 RVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVL 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--MDGF 237
K + + + Y ++ + + F
Sbjct: 180 DMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + +KK + ++ P ++ + ++
Sbjct: 240 ISLSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGSH 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + + +
Sbjct: 300 YVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMRR 358
Query: 358 KE 359
E
Sbjct: 359 AE 360
>gi|319789792|ref|YP_004151425.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114294|gb|ADU96784.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 354
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 140/361 (38%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY F +K L + L VID N + + S A R+P
Sbjct: 1 MIKKLDRYVFSEGVKFFFLTLTTFLTLFAVIDFVSHFNMVSK---VGASGAAAYILGRLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L ++IP TL+ +V + TSEL ++RA+GIS ++ P V+ +L + +V V
Sbjct: 58 LYGVRVIPIATLIATMVTLSRFSETSELTVARALGISTYRFSAPLVILGVLASVASVAVQ 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +G K ++ + + W + F ++LP+N E
Sbjct: 118 ETLLPAGLKRATEIALKAGEEVTNGPQKVPGVWFKDRAGDFVFFW---ELLPKNKRAERV 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQ 238
+ I + + + + L++V + +K + +N+ + +
Sbjct: 175 SIIKVKDFSPTGRIDAEEAIYKGGGRWLLREVFVRDFKELKSTEKETLPINLGVSVKELL 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ + +K N + + Y + + L+ V +I +
Sbjct: 235 LSVNNPEAMGLLELFLTIKRLSKLN-YDTNYLRVELYSKLALGLLPVITAIIGIPFGVYN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V ++ +++ S GKS +L P+ AA P++L ++ + +L +
Sbjct: 294 PRNKK-GYTVLLAAIIVVSMWITVSLFLSLGKSEVLPPLYAAFAPLLLFGAVGLFLLGRV 352
Query: 359 E 359
E
Sbjct: 353 E 353
>gi|28198044|ref|NP_778358.1| hypothetical protein PD0108 [Xylella fastidiosa Temecula1]
gi|182680671|ref|YP_001828831.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|28056104|gb|AAO28007.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182630781|gb|ACB91557.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|307579132|gb|ADN63101.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 368
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 9 DRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L ++ + VL +
Sbjct: 68 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVLTGETLGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 128 WAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
+ ++ A + D L++V + +S +
Sbjct: 188 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSRLDPAVLA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 248 AGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGL 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS GI + + + L L+P ++ + S + ++
Sbjct: 307 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQ 366
>gi|301310576|ref|ZP_07216515.1| putative membrane protein [Bacteroides sp. 20_3]
gi|300832150|gb|EFK62781.1| putative membrane protein [Bacteroides sp. 20_3]
Length = 361
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 114/353 (32%), Gaps = 4/353 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K +L T ++ + + + V D+NE ++ + +P
Sbjct: 6 KRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPYF 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++
Sbjct: 66 ANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTS 181
I + ID ++ N + E F
Sbjct: 126 IIPPANETRIDFQNKYIRNKKVDYVKNAQLEIEPGIIAYFDSYDARSNMGYRFSLEHFED 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K L ++ + + TTL I F
Sbjct: 186 KKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHIFQGSRKDTTLTIV--PSDFLISV 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 304 GMGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|86133725|ref|ZP_01052307.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
gi|85820588|gb|EAQ41735.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
Length = 363
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 122/360 (33%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA-VLAATRVP 60
IL Y K +L T L+ LL + + ID+ E + E + + +
Sbjct: 1 MKILDWYILKRFLVTFLFTLLILIPIAIAIDIAEKIDNFLEHQDLGFLQIVDEYYINFII 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P + I+ L+ +E++ IS + L P+ +G+ L+ + ++ +
Sbjct: 61 YYANTFMPLALFIAVILFTSKLSNNTEIIAINNAKISFTRFLFPYFIGATLITLLSLAMN 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + S KI + N + + +I + +++ DFT
Sbjct: 121 HFVVPSSSKIRKKFELTYIKNKRQNQEFKYISDFSLQLTDSTYIFIRNFNTQSNAGYDFT 180
Query: 181 SITIDK-KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDG 236
S D K D + L+ + N
Sbjct: 181 SEVYDGLTMKSKLVADNIRYNDKDSTFALQNWRLRKIYDDKDSIFSGNKIDTVFNFTPRD 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S E++K + S K + + +F+ +P+ +T+IA +++
Sbjct: 241 LIYKSALSQEMPSDELLKFIEISEKRGVKNLNAYLVEFHKRTSLPIASYVLTIIAVALAF 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +A G+ F+ ++ I + G + +P I S+++ + L
Sbjct: 301 R-KRRGGTGVNLAIGVGMMFIYVFLLKISEVLGAVAGVNSFIYVWMPNIFFGSIALYLYL 359
>gi|330752461|emb|CBL87411.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
Length = 357
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/355 (14%), Positives = 107/355 (30%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I Y K YL T LL + + ++L E +++ E A
Sbjct: 1 MKIFDWYILKRYLLTFFLMLLLFIPIGITVNLAEKIDRILENK-VPFDEVAAYYFDFTIY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + GIS ++ L P+ +G ++ I + +
Sbjct: 60 FANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGISFFRFLRPYFIGGTVIAIVALFLGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A K + ++ N +S I + + + N+ +
Sbjct: 120 YWAPKASKGYNEFTYKYLSNKKAVQSQYIYQQINDDEYIYVSNFDSNSMRGNNFTLEHFD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + I K + +
Sbjct: 180 GNKLEYKIHASAIRFIEKDSNYRLSNYYLRYIGKDHDSIIFKRRIDTLLGFDLLDLTPPK 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + +E+ + + R + Y +P+ + +T+IA +VS R
Sbjct: 240 YVAETLTVHELSDFIKREEARGSSNINRYKVVQYKKWSLPVSVYILTIIAVAVS-SIKRR 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ +A+GI + + + PV A P + L+I +L
Sbjct: 299 GGMGVNLAFGIVIAMVYVFFDKVFGVMAEQSDFPPVVAVWFPNFIFGILAIYLLF 353
>gi|15807418|ref|NP_296151.1| hypothetical protein DR_2431 [Deinococcus radiodurans R1]
gi|6460246|gb|AAF11972.1|AE002073_2 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 420
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/373 (14%), Positives = 120/373 (32%), Gaps = 18/373 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY L + L ++L + L E+ + S A L A VP
Sbjct: 6 MKLFERYVLSEILPPLVGALAAVILLFLLAGLEEVIGPLLAK-GASPLLVARLLALSVPE 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + +P + ++ L SE+ + A G+ + +LL P ++ ++ + + + L+
Sbjct: 65 ALSRALPIGLMFATLLGLSRLAADSEIKGALAGGVPVTRLLRPVLLLALGITVLSFLIGE 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + + QQ + + + + + D
Sbjct: 125 GLRPKAYSESLRVQQQIVFDNPRVTGLGQAGEGGQTLVLTDALNRAISVGEVRPGGELRD 184
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPI 232
+ + A+ + L+ + + L +
Sbjct: 185 LRIVAMQAGEAPREVITAESGTLVPGSNVLELRRGQRVTYQNARPVTVLSFENGRLPVQD 244
Query: 233 KMDGFQKFSEQFA------SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
F K + E+ + + + T F+ I PL +A
Sbjct: 245 VQANFAKDERSSTAQAGLVNLPLRELWDRTEAFRQQKVPAPAEF-TAFHRKIAEPLAALA 303
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ A S+++ R + + I F Y ++ + G++G L PV AA P ++
Sbjct: 304 LAFFAVSLAVYSFR-GSLNLGFTWAILLAFAYYATWSVFRIMGENGGLPPVVAAYAPDLI 362
Query: 347 TISLSILILLQKE 359
+ + +L + E
Sbjct: 363 AVVAGLALLWRSE 375
>gi|262280664|ref|ZP_06058447.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257564|gb|EEY76299.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
Length = 356
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 120/354 (33%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + IL + ++ P+Y+ + + P +
Sbjct: 6 IVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGEL--KPDYNAWQALIYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I + + +
Sbjct: 64 YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + I + ++ DF
Sbjct: 124 IPYTNEKAQSVKS--HRSVAALGEVKGYWSREGQRFIYIDYANSQGNLKDIQVVDFDQNY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + K + + I D + +L + ++ +
Sbjct: 182 YLQSLINAQQGQFVKNGQWALKKAEQMDILAAGNAIKTDHDEQSLALALQPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + ++ + + F+ + P L+A+ L+A S R
Sbjct: 242 PEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + P L+P++L +L +
Sbjct: 301 MGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYR 354
>gi|19704365|ref|NP_603927.1| hypothetical protein FN1030 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714617|gb|AAL95226.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 363
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 117/364 (32%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ + + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMD 235
T K K I + +K V Y + + L +
Sbjct: 180 VKFNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKIEYKSNLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I SVS
Sbjct: 240 FIKASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ +P IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWVPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|304321348|ref|YP_003854991.1| putative permease [Parvularcula bermudensis HTCC2503]
gi|303300250|gb|ADM09849.1| putative permease [Parvularcula bermudensis HTCC2503]
Length = 426
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 122/367 (33%), Gaps = 17/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY FK L L +++ + + + M E S+ + +P ++
Sbjct: 48 LLDRYIFKQVAVPFLLILACTTAVIWFTQMLQRVDLMVEDGG-SLLSFLRVTVLLIPSLV 106
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF + SEL RA G S +L P +V SIL + ++ + +
Sbjct: 107 GVILPFAVFAAVLYALNLFVTDSELPAMRAAGASRLRLARPVLVLSILAALVSLYINADL 166
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + + + ++Q + + ++ + +S
Sbjct: 167 QPKTYRQLRQTVEDVRSDIAQSLIREGVFVQPTAQITVFAQEVRPGGQFIGLFINDSSDP 226
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK---- 239
+ K R +A + ++ V+Y+ + + + F +
Sbjct: 227 RETKTYTAERGLFQMAETGPKLLLIEGTVQYRDRETGRVDVFRYIETAVDLAAFDRGSGG 286
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S R+ +++ S+ S R + + PL A+ ++A L
Sbjct: 287 RSLDETERTVSQLLNP-DLSDPSIARLADRYRAAGHARLATPLYCPALAVVALCFLLSPP 345
Query: 300 -RSNQPRIIVAYGIFSGFML----YTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V I +L + + + G L + P+ + + S+ +
Sbjct: 346 ISRRGYGQQVLMAIGCALLLRTGGFLLQGLAADLGALNGLQYIV----PLAVILLGSVYL 401
Query: 355 --LLQKE 359
L++ E
Sbjct: 402 SGLVRLE 408
>gi|152998005|ref|YP_001342840.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
gi|150838929|gb|ABR72905.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
Length = 353
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 127/362 (35%), Gaps = 14/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY-SISRGAVLAATRV 59
M I +Y L L + + L F + E ++ + S+ + R+
Sbjct: 1 MTKI-DKYIASSVLWAFLIVAVVLLGLDFALTFIEQIKKVNDNYTIQSLLQVI---LFRL 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + + IP +L+ ++ L TSEL + RA G+ IW++ +L+ + + V
Sbjct: 57 PGKLAEYIPVASLIGTLMGLGTLAATSELTVMRAAGMPIWRIGFAACQPILLVSLLGMGV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E+ + + W++ N I
Sbjct: 117 SEFVAPVAEQKANLIEKFKGQESGAFSLTGGVWLKADNDFVYID-----AADAVGTLYGI 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDG 236
+ D + + +L V E + ++K S N+ I +
Sbjct: 172 QIFSPDGQQLKHIITATSAQHTEGSQWQLNNVTETIFAPDHVEKKSLEHANWNVSITPEH 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S++ + S ++ ++ + + E +F+ + P+ +A+ L+A S
Sbjct: 232 LFLASQEPDALSLSQLKNYQTYLKQQ-KLDGAQYELEFWITALRPIASLALVLVALSSVF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS+ + G+ G + + + P+ IP+I+ + I+++
Sbjct: 291 GPLRSSTMGGRIFTGVIIGLAFQNALNLFGRMSVAINFPPIIGVSIPIIICLLAGIILVR 350
Query: 357 QK 358
++
Sbjct: 351 RR 352
>gi|226951740|ref|ZP_03822204.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|294648982|ref|ZP_06726430.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226837530|gb|EEH69913.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|292825117|gb|EFF83872.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 356
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/354 (15%), Positives = 123/354 (34%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ K + L L L + + PNY+ + + P +
Sbjct: 6 IVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSL--KPNYNAWQAFLYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ +++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 64 YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFTLSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +Q + W + I + N DF
Sbjct: 124 IPYTNEKAQSIKKQ--RSVAALGEVKGYWSREGQRFTYIDYANSQGQLRNIQSIDFDENY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + + Q I D + L + ++ +
Sbjct: 182 RLQSFVTAEQGNFVKDGQWTLEQSHQIDLLPQGNAIKTDHANQALALALQPKYVHMVTID 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + + + E F+ + P L+A+ LIA S R
Sbjct: 242 PEDLSPTQLISFMRYMEEYSQVPKT-YELAFWQKVASPFALIALVLIACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F+G + + M P L+PV+L + +L +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFMGYASLVYAPSPAWFVLLPVVLMFMIGSYLLYR 354
>gi|116747639|ref|YP_844326.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696703|gb|ABK15891.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
Length = 423
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/362 (12%), Positives = 117/362 (32%), Gaps = 6/362 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY K + L+G +++ L ++ ++ ++++ L A +P
Sbjct: 33 MKMTLYRYLIKEQMVPLGVCLMGVSLVLITGRLFQLL-KVLFTSSFTLGDLMALVALAMP 91
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P +L+ ++ F LN +EL+ RA GI Q V + + + + + +
Sbjct: 92 KLMLFALPMASLLGVLLAFVRLNSDNELIALRAAGIGFHQFFPAVVSLLLGVTLISFVNM 151
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K ++ +G ++ F
Sbjct: 152 IFVIPPTGKAFEVKLRSMARSGLPVLMKEGTFITAIPKLTFFFQSVNPTELSVRGIFVQD 211
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I+ + ++ + K + + + +
Sbjct: 212 RREEKVRLAIVAESARIVYQRDSNHLTFKIANGSITRVADDMKNAQAVSFKAYDLSLSLD 271
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + +F+ + P + + LI A +
Sbjct: 272 ELIGSARGSKMNKREMTLRELYRVIVEKTGDVGHALEFHQRLAFPSGCLLLGLIGAPLGA 331
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F + + + G+ Y I++ K G++ ++ P A P +L I+ S +
Sbjct: 332 VFRQRGRIA-GITIGLVVFLAYYVILSAGKGLGENHLVHPFLACWAPNLLCIAASFYLWR 390
Query: 357 QK 358
+
Sbjct: 391 KM 392
>gi|293610040|ref|ZP_06692341.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827272|gb|EFF85636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124205|gb|ADY83728.1| hypothetical protein BDGL_003142 [Acinetobacter calcoaceticus
PHEA-2]
Length = 356
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 122/358 (34%), Gaps = 13/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + IL + ++ P+Y+ + V P +
Sbjct: 6 IVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGEL--KPDYNAWQALVYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ +L +SEL++ R++G+S+W+++ + ++LL I + + +
Sbjct: 64 YEILPISALIGAVIGLGSLATSSELIVMRSVGVSLWRIVGWVMRSALLLIILSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + + FI + ++ +
Sbjct: 124 IPYTNEKAQSVKSHR------SVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQVVDF 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
I N + LKK + I D +L + ++
Sbjct: 178 DQNYYLQSLINAQQGQFIKNGQWALKKAEQMDILAAGNAIKTDHEEQSLALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+A+ L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +F G Y + + P L+P++L +L +
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYR 354
>gi|260494012|ref|ZP_05814143.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260198158|gb|EEW95674.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 363
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 117/364 (32%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGEINRETGVAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + +K V Y + L +
Sbjct: 180 VKFDTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + ++ P + I SVS
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKSIGE-DTRIYLSELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|226946454|ref|YP_002801527.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226721381|gb|ACO80552.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 356
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/363 (17%), Positives = 129/363 (35%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY L + L +DL + +G+ Y + + + +P
Sbjct: 1 MRILERYLLGNLLLGFAAAAALLLPLFSTLDLVGELDDIGD-AGYRLGQALQVTLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ PFI L+ I L+ + EL + R G+S ++ ++ LL +
Sbjct: 60 RAVELGPFIALLGGIAALGQLSMSQELSVLRTAGVSATRIGLTALLAGTLLAGGLGALDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ I L K + DK D W + I A +P + F
Sbjct: 120 FVASPLQQKAIKLRAYAKPDNDK---DDSIWARKDGQVVRIGSLATGRVPNHLEIFRFDE 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVV---EYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + R + I +L V G +
Sbjct: 177 SNRLQEYILADRAE----IQPGGLWQLHDVRLKRWSDEGESVERLERLEWRAILPDSRLD 232
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + AS S ++ + F + + E + + +P++ +AM L A +
Sbjct: 233 EVTLPPASLSARQLRGYVHFLQNTGQPSI-QFEIALWQKLGVPILTLAMILFALPFTFAP 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS +A G G ++Y + S G+ L + L+P ++ + +++ ++ +
Sbjct: 292 VRSTGLGSRLALGAVMGLLVYIGNESLVSLGQLLKLNAMLVGLLPALVLLGMALALVRRF 351
Query: 359 EDG 361
+ G
Sbjct: 352 DRG 354
>gi|332307892|ref|YP_004435743.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175221|gb|AEE24475.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 368
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 121/357 (33%), Gaps = 10/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K +K+ L M + + ++ + S A +P++
Sbjct: 2 LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASN-GDIPASLVLGFLALSMPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ L SE+ + RA GIS W + +V ++++ + T + +
Sbjct: 61 SLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG---AKKILPENHIWEDFT 180
A + L +Q + + Q +N + IF+ +
Sbjct: 121 APMSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHD 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ T + +++ K L + + L QY +K+ + +
Sbjct: 181 TTTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQ 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ R F++ S A + + IPL L + +IA +S R
Sbjct: 241 EAEQKRRKLSAYTTAQLFNDPS-----IDAIAELQWRFAIPLSLFFLVIIAVPLSAADPR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + ++ + + G + P+ + + + ++ +
Sbjct: 296 QGRFGK-MFPALMLYLGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGVIGLALIFK 351
>gi|299771879|ref|YP_003733905.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
gi|298701967|gb|ADI92532.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
Length = 356
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 123/358 (34%), Gaps = 13/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K + IL + ++ P+Y+ + + P +
Sbjct: 6 IVAKYVTKTTALAMFGTTVVLSILQILFTYLGELGEL--KPDYNAWQALIYVLWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I + + +
Sbjct: 64 YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + + FI + ++ +
Sbjct: 124 IPYTNEKAASVKSHR------SVAALGEVKGYWSREGQRFIYIDYANSQGNLKDIQVVDF 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
+ + + LKK + I D + +L++ ++
Sbjct: 178 DQNYYLQSLINAQQGQFVKDGQWALKKAQQMDILAAGNAIKTDHDEQSLSLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+A+ L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +F G Y + + P L+P++L +L +
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDFLGYASLVYAPSPAWFVLVPILLMFGAGSYLLYR 354
>gi|257466753|ref|ZP_05631064.1| hypothetical protein FgonA2_04885 [Fusobacterium gonidiaformans
ATCC 25563]
Length = 361
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/362 (11%), Positives = 109/362 (30%), Gaps = 6/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +LK Y L + + + + ++ + S + + +P
Sbjct: 1 MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYV-NEGQLSPGQIPLFIGNLLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II + P L+ ++ + E++ + GI +L+ + S L+ + + +
Sbjct: 60 IIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLND 119
Query: 122 PIATSGEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +L + ++ ++ + + + + E
Sbjct: 120 RVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVL 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--MDGF 237
K + + + Y ++ + + F
Sbjct: 180 DMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + +KK + ++ P ++ + ++
Sbjct: 240 ISLSNIIPKQKTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGSH 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + + +
Sbjct: 300 YVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMRR 358
Query: 358 KE 359
E
Sbjct: 359 AE 360
>gi|146328919|ref|YP_001210037.1| hypothetical protein DNO_1153 [Dichelobacter nodosus VCS1703A]
gi|146232389|gb|ABQ13367.1| conserved hypothetical membrane protein [Dichelobacter nodosus
VCS1703A]
Length = 349
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 118/357 (33%), Gaps = 9/357 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + R+ + + L+ + + F++ E + +G NY + VP
Sbjct: 1 MITLYDRHIARIITAHIIIVLIFLLGIDFLVQSAEESDNIG-RGNYHFWLMLSILLLNVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + +P LV I LN+ EL + R GIS +L ++ + LG +++
Sbjct: 60 ARIVEFMPAAVLVGTITALGQLNKQQELTVIRTSGISRLRLSLSGLMIAFFLGCALIVLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L N ++D W++ + I E +
Sbjct: 120 EYGVAPAQNRAQWLHH-HALNTTAPQTDHGIWLRDGDNIVYIGAFQADGSLEKIRFYRPH 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + +++ + +T I +
Sbjct: 179 EHDLEIQESQRATFMQTHWQLDDNR-----ALCIGSQSSMPITPTTHWQNRILPATIAQL 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + E+ F ++ ++ + + + I +P+ + M ++A R
Sbjct: 234 MQLKNAYTLRELYTITGFLR-AHQLNDQQMSLKLWQRIFLPITTITMVILALPCVFNTRR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ GI G Y + I+ G +AL+P+++ + +L +
Sbjct: 293 DGN-GARLVIGILLGASYYVVQGIVTKLGLLLHWSTALSALLPILIFALPPLFLLTR 348
>gi|257126591|ref|YP_003164705.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
gi|257050530|gb|ACV39714.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
Length = 365
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/368 (13%), Positives = 132/368 (35%), Gaps = 12/368 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + +++ + ++ + + E+ ++ + +P
Sbjct: 1 MKIIDKYIYNSLILPSVFGISIFTFIMMLNVVMEVMERLF-ASDLPFISIIDYLFYAMPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q IP + ++V+ L+ T+E+V G+ +++++ P + ++L + + +
Sbjct: 60 VLVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGVGLFRIIRPAFIFGVILTLIGLGLEL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +Q + ++ ++ SN ++ ++ + ++F
Sbjct: 120 YVNPRALKNINAQTKQILASRPSSLTEEKVFL--SNEEKGFGFYIDEVSNDKATAKNFLI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM------D 235
I N A+ A ++LKKV Y + + + S +
Sbjct: 178 INKRGDNPYPIVFLAEDAKFDPGIIRLKKVKGYAFDKTGSSQVSAEYQEQEIPISTFFRE 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFS--NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + + E+ K + N +A+ + Y I+ PL + +
Sbjct: 238 KKQELKKSRKEMNLKELEKFYKANIKNPEEKEAALKAQVEIYQRIIGPLASTFLCWLGVL 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S+ RS + I + F + + K + A +P + L I
Sbjct: 298 LSVGHRRSGR-GISFGISLIVIFGYIGMASYAKIMVLKNDVPASIAMWVPNFVLFILCIF 356
Query: 354 ILLQKEDG 361
++K G
Sbjct: 357 FSIKKYKG 364
>gi|256027206|ref|ZP_05441040.1| hypothetical protein PrD11_04301 [Fusobacterium sp. D11]
gi|289765183|ref|ZP_06524561.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|289716738|gb|EFD80750.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 363
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 117/364 (32%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + +K V Y + L +
Sbjct: 180 VKFETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + ++ P + I SVS
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKSIGE-DTRIYLSELAKRYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|237744435|ref|ZP_04574916.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229431664|gb|EEO41876.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 363
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 116/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + +K V Y + L
Sbjct: 180 VKFETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSDLYKDDPSS 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + ++ P + I SVS
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKSIGE-DTRIYLSELAKKYSFPFASFIVAFIGLSVS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|71275897|ref|ZP_00652180.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|170729352|ref|YP_001774785.1| hypothetical protein Xfasm12_0116 [Xylella fastidiosa M12]
gi|71163274|gb|EAO12993.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|167964145|gb|ACA11155.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 368
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 9 DRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L ++ + L +
Sbjct: 68 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMALTGETLGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 128 WAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ ++ A + D L++V + + + + +
Sbjct: 188 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRLDPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 248 AGLAKPRNLSVHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAIPFSFGL 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS GI + + + L L+P ++ + S + ++
Sbjct: 307 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQ 366
>gi|114326914|ref|YP_744071.1| hypothetical protein GbCGDNIH1_0250 [Granulibacter bethesdensis
CGDNIH1]
gi|114315088|gb|ABI61148.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 355
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 109/358 (30%), Gaps = 5/358 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY LK + L +++ + +G+ Y + A+ A +P
Sbjct: 1 MKK--ERYAAMAALKAVGLSAIALTALFSLLEFVQQLASVGQ-GRYGMLDAAIYVALTIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q+ P L+ ++ L R EL R +G+S +++ + SI L + L+
Sbjct: 58 YRLLQVFPVSMLIGTLLGLGGLARNGELTALRGLGMSERRIILSVIAFSIPLMVILFLMA 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + +S W +I P N F
Sbjct: 118 QFVIPPAQREAQTWRSNALPDTTALRSQDSFWAYGDRHFLNIQHFEHHDEPYNIDIFSFA 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + L + + + Q
Sbjct: 178 PDGELHRYLHAQSADILPNDRWVLHDVLSR-TLVDGQLRKAHLDRLDWTPFLTPQQTQFL 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + + + R E + + I IPL ++AM + A R
Sbjct: 237 RLRPDAMPPLALWRYVHSLKQRG-LQAIRYEQELWAKISIPLTMMAMVIAATPFVFGGGR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+A G G + + I L P AL P +L + L I + ++
Sbjct: 296 VQNTGAFIALGAAIGVVFTLVQQISGHLDVLLNLNPAVTALTPPVLLMWLGIDLFYRR 353
>gi|42523904|ref|NP_969284.1| YjgP/YjgQ permease [Bdellovibrio bacteriovorus HD100]
gi|39576111|emb|CAE80277.1| predicted permease YjgP/YjgQ family [Bdellovibrio bacteriovorus
HD100]
Length = 367
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/355 (11%), Positives = 117/355 (32%), Gaps = 7/355 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F L + + LL + ++ + + + + ++ A + + ++ +
Sbjct: 12 YIFFEMLPSFILGLLVFVSIILMFQVLR-LTEFALVHGVAMKTIAEIIGYVIISMLPILF 70
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L ++ + L++ SE+V +A G+ + LL P ++ + L+G+ + + IA G
Sbjct: 71 PMALLFSVLLTYGRLSQDSEIVAMKASGLPMGTLLLPALILATLVGVISAQMSFNIAPWG 130
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPW-MQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ L + + + + ++
Sbjct: 131 NRQFEVLYSRLANTKAAAIIKEGTFAEGFFDMVIYANEVNTDKGLLKKVFIYDEKNGDVP 190
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI----KMDGFQKFSE 242
I + L ++ + + R + + + ++ ++
Sbjct: 191 LTIIAKAGEIVPDPTRPGHEILLQLNQGEIHRQAKTHTKISFDTYDVRFSEPQNIEEKAK 250
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + E+ ++ + + +++++ I ++ + +I + +R
Sbjct: 251 SPPSLTLEEVRNRLKE-DIKDKEVRRTLQSEYHKRWAISVLCIVFAMIGVGLGTTTNRRA 309
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + + + +SG L A P +L +L + L +
Sbjct: 310 AKAGGMILCIGIIIFYWILYVAAEGAARSGALPAALAIWTPNVLFAALGVETLRR 364
>gi|326336103|ref|ZP_08202275.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691612|gb|EGD33579.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 359
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 109/358 (30%), Gaps = 4/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K Y T L + + ++D E +M + + A V
Sbjct: 1 MKIIDRYILKRYFLTYSALFLMFIPIGILVDFAEKNQKMTD-NHAPTEAIIKYYANFVIH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E+V + GIS + L P+ G+ +L +F +++
Sbjct: 60 FANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLIMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + K + N + + +
Sbjct: 120 FVVPYSSGVYNEFYGTYLSPNLYSKGSRLYNQVNKNEYIYVSSFDANNNQGSDFVLERFD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ I + K
Sbjct: 180 GLKMTDKITASNIQWIENDSIKTYRLSYYTHRKVGEFDDIYEQVIQKDTLLNFKTTDLLP 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+++F+E+ K ++ + + E +Y + +T+I +VS
Sbjct: 240 IEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAVSSVKK 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A+G+ GF I + + P+ A +IP + L++ ++ +
Sbjct: 300 R-GGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVYMIRK 356
>gi|262373935|ref|ZP_06067212.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
gi|262310946|gb|EEY92033.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
Length = 356
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 122/354 (34%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ K + L L L + + PNY+ + + P +
Sbjct: 6 IVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSL--KPNYNAWQAFLYVMWGAPRYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ +++ L SEL++ R++GIS+W+++ + ++LL + + ++ +
Sbjct: 64 YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFVLSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +Q + W + I + N DF
Sbjct: 124 IPYTNEKAQSIKKQ--RSVATLGEVKGYWSREGQRFTYIDYANSQGQLRNIQSIDFDQNY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + Q I D L + ++ +
Sbjct: 182 RLQSFITAEKGQFVKDGQWTLQDSHQVDLLAQGNAIKTDHAQQALGLALQPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +++ M + + + E F+ + P L+A+ LIA S R
Sbjct: 242 PEDLSPSQLVSFMRYLEEYSQVPKS-YELAFWQKVSSPFALIALVLIACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F+G + + + P L+P++L + +L +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFLGYASLVYAPSPAWFVLLPIMLMFGIGSYLLYR 354
>gi|313206715|ref|YP_004045892.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
15868]
gi|312446031|gb|ADQ82386.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
15868]
gi|315023785|gb|EFT36787.1| hypothetical protein RAYM_00180 [Riemerella anatipestifer RA-YM]
gi|325335845|gb|ADZ12119.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
Length = 364
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/363 (13%), Positives = 129/363 (35%), Gaps = 8/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K +L T ++ L+ I+V V+D+ + + +
Sbjct: 1 MKIIDAYIIKKFLGTLVFMLVLLSIIVIVVDIQAKAPNIEKSGYTVGDFLLHFYPFWMIY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + + I + +E+V + G S + P+ + ++ + +F +++ +
Sbjct: 61 LILTFMSILVFISVIYFSSRMADNTEIVAIVSSGASFHRFARPYFMVAVGIALFMLMLNH 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+L+ + +++ + + + ++ + D+
Sbjct: 121 FALPWANVKKNELMVFTESQVRQEEKNRSVAIS-AQMSPTEYVFIGSYHRKEARGSDYLY 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT------LNIPIKMD 235
DK NK+IH+ D K Y+ + + + +
Sbjct: 180 QKFDKNNKLIHQIRGDYVSWDEKKQAFSITSFYEKKAGKNETEKLSNGTQTYQSFGYPPE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+++ E++K ++ + + + +P+ ++ +T++ +++
Sbjct: 240 ELFPDELLGENKTTPELVKFINREKIKGNGNINTYLNELHARTSMPVSIIILTILGLALA 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
E R + +A GI F+ +K S IL P A +P + L++L+
Sbjct: 300 SEKKR-GGIGVNLAVGIALAFVFIFSFEALKVVSSSKILTPFVAMWMPNFVFAPLALLLY 358
Query: 356 LQK 358
++
Sbjct: 359 FRR 361
>gi|189219653|ref|YP_001940294.1| permease [Methylacidiphilum infernorum V4]
gi|189186511|gb|ACD83696.1| Predicted permease [Methylacidiphilum infernorum V4]
Length = 395
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 127/359 (35%), Gaps = 10/359 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL+RY FK +L L+ ++ LV + DL + + + +P
Sbjct: 26 MKKILFRYLFKGFLFPLLFTIVAFCSLVIIADLFGSLEDFIQNK-ATPGQIFHYYLAYLP 84
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I I+P +L ++ L+R EL+ +A G+ + ++ PF++ +L+ +F +
Sbjct: 85 AVIIMIVPPASLFSSLYFLMQLHRHGELIAMQACGVPLQKIFTPFLIIGVLVTLFLAALQ 144
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ K N + + ++ +++ + ED
Sbjct: 145 LGPGGNSQAKRDQILEDIKGNKTAVHALRGIIYKEEAEKR--IWYFRQLDFIKNQGEDVE 202
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKM 234
+ + K + + A A ++ +V Y ST
Sbjct: 203 VVVQENSGKDLKKYFARKAAWKDNHWIFYEVNRIDYDSANNFLQSTYFETLPLVSWNTPP 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + E+ K ++ + QFY L+ PL ++ + LI +
Sbjct: 263 RQMVALEKKPRDLNASELWKLINKPRSIQKTLLAPYQVQFYTLVAEPLTILVLLLIGLAE 322
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S + V +F Y I + G+ + P A P++ S+
Sbjct: 323 GGRLSSRHPTA-GVFNALFILIAFYLIFHFFQILGQGSRIPPAVAIFSPLVAFTLFSLF 380
>gi|78486087|ref|YP_392012.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
gi|78364373|gb|ABB42338.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/372 (13%), Positives = 132/372 (35%), Gaps = 17/372 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M ++ RY + + TL L+ +I++ + ++ + +Y++++GA+ ++P
Sbjct: 1 MMNLIERYLGRVLVSHTLLVLMVLLIILGFSEFMIQIGKVSD--DYTVAKGAMYTVLKLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +I P L+ ++ +L +EL I R G SI ++ + + +L + ++
Sbjct: 59 VYGYEIFPVALLIGTLIGLGSLANHAELTILRVTGWSIRRIFFAVMKSAFILWVCAAVIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + E + + S WM+ + +
Sbjct: 119 EWVAPASESYAKKMRGEALHKNFSIGSTDDFWMRDGERYIHVGRVISDTQFYDVTIYSLE 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV--------------VEYQYGRIPIDKNST 226
+ ++ + ++ + +KV + D+
Sbjct: 179 DGQLSEQVHANTARYSEKEGQWVLYSLNRKVLDWQKMPALSPDRKTWKKLQFKQYDEVEG 238
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+++P+ Q + ++ +SF ++ + F+ + +P +++
Sbjct: 239 AVDLPVSPTLLQTLHVETRYMGITDLFSYISFLEENG-LDAEAYKLAFWRKLAMPFVILG 297
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M + + R + GI G + + I + L + A +P I+
Sbjct: 298 MIALVFPLIFGSQRQVSIGQRIFVGIMIGMSFHLLNQIFGNLSVVYQLPAIMGAFLPSIV 357
Query: 347 TISLSILILLQK 358
+S + L++ +
Sbjct: 358 LMSAAFLLMRRL 369
>gi|237741964|ref|ZP_04572445.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|229429612|gb|EEO39824.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
Length = 363
Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 116/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + I +K V Y + L +
Sbjct: 180 IKFETQISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I S S
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSAS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|15836745|ref|NP_297433.1| hypothetical protein XF0140 [Xylella fastidiosa 9a5c]
gi|9104926|gb|AAF82953.1|AE003867_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 368
Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 9/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 9 DRYVARAVVATVLLTWLVLLGLDVVNAFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L ++ + L +
Sbjct: 68 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMMIGMGTGLMALTGETLGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 128 WAQAQADILKASAKYQSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ ++ A + D L++V + + + + +
Sbjct: 188 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRLDPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 248 AGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGL 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS GI + + + L L+P ++ + S + ++
Sbjct: 307 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLGGSYWLFRRQ 366
>gi|255320990|ref|ZP_05362163.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262379920|ref|ZP_06073075.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255301954|gb|EET81198.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262298114|gb|EEY86028.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 356
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 112/354 (31%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ K L + IL + + E Y+ + + P I
Sbjct: 6 IVAKHVTKTTALAMLGATVVLSILQVLFTYLGELGNLKE--GYNAWQALLYVLWSAPRYI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ L SEL+I RA GIS+W+++ + ++LL I + + +
Sbjct: 64 YEILPISALIGAVLGLGTLASNSELIIMRAAGISLWRIVGWVMRSALLLVILSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + W + I + N DF
Sbjct: 124 IPVTNERAESVKS--HRSVAQLGEVKGYWSREGQRFIYIDYANSQGNLRNVQVVDFDQDY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + ++ + + L + +K +
Sbjct: 182 RLQALLNADSGQFEQDGQWRLQNSVQVDILEAGNAVQHIAEQQPLALALKPKYVHMVTLD 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++I M + + + + F+ + P L+ + LIA S R
Sbjct: 242 PEDLSPSQLISFMRYMEEYSQVPKT-YQLAFWQKLASPFALITLVLIACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F G Y + + PV P++L +L +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYSPSPVWFVFFPILLMFIGGSYLLYR 354
>gi|146292282|ref|YP_001182706.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|145563972|gb|ABP74907.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|319425582|gb|ADV53656.1| inner membrane component of lipopolysaccharide transporter, LptF
[Shewanella putrefaciens 200]
Length = 370
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 120/357 (33%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + I + + S L +P ++
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASD-GEFPASLIVTLIGLNIPALV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
E+ ++++ + + N + +F+ E D
Sbjct: 121 TPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ T + + +++L V YQ D Q
Sbjct: 181 PSDETGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + A +F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALTVTDLLK-------VESAEAVAEFHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ + + ++ + + G++ + + + I +L
Sbjct: 294 VRQGKFAKMLP-AVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFLL 349
>gi|256845304|ref|ZP_05550762.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|256718863|gb|EEU32418.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 363
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 116/364 (31%), Gaps = 7/364 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGEEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I T + D + ++ ++ + + E
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMD 235
T K K I + I +K V Y + L +
Sbjct: 180 IKFETEISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E + E+ K + + P + I S S
Sbjct: 240 FIRASAEDPRMLTIKELKKTIKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSAS 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I +
Sbjct: 299 SKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358
Query: 356 LQKE 359
+ E
Sbjct: 359 NRAE 362
>gi|187736000|ref|YP_001878112.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426052|gb|ACD05331.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 396
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 122/366 (33%), Gaps = 17/366 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + + + ++ + D + + L + + +++P+I+
Sbjct: 9 ILDKYVARTWFTAFIMCTAILTLIYIIGDFADNVGDLMNL-DAPLMGTFRFYLSQLPMIL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P+ L+ + L+ +SE+ G S+ ++ P ++G++ I+ +
Sbjct: 68 NLILPYTLLLGTLWALTKLSSSSEITGMLQSGRSLLRINTPIIIGAVFASIYFGIFGFHW 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT--S 181
A + + N + S + + + I + +
Sbjct: 128 APNSALYRKLMFSSLSQNKNNHASQSTIYKNDAESRIWYLGNPPGIDSPGNPFRQVRVEQ 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP------------IDKNSTTLN 229
+ K K D + ++ ++ Y + + + +
Sbjct: 188 FSAPGKMKYELFADEATWDPASRTWTFRQAIKRNYSQEEPRQLHDVPVFAGQEYQTLKEH 247
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P + + ++ + + + S +N + +T+++ I + +T
Sbjct: 248 YPETPWQLISPNVRVDTQGTPALQELIK-SGTTNARYLRSLQTEWHVRIARIFSCIILTF 306
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IA ++ F R + + +F + + + +G L A +P I+
Sbjct: 307 IAIPSAITFQRRSAMS-GIGIALFLAAAMLFLYEFFPTLASAGYLPTWLGAWMPNIIYTI 365
Query: 350 LSILIL 355
++I +
Sbjct: 366 IAIRLF 371
>gi|330899516|gb|EGH30935.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330975730|gb|EGH75796.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 353
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 71/361 (19%), Positives = 125/361 (34%), Gaps = 14/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILV-FVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M L RY K L L L + LV + + + + Y+++
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVS-LFAFIDEMGDISDT--YTLADALSYVMLTA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV
Sbjct: 57 PRRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E + +GD Q + W + + I + N +
Sbjct: 117 GEYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDG 236
T D + ++ A A D +LK V + + +T ++ +
Sbjct: 172 TRYRFDDQRHMLTSSFAKEAHFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALSPQL 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 232 LSTVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF I ++ P+ A L+P IL+L
Sbjct: 291 GPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGILLLR 350
Query: 357 Q 357
+
Sbjct: 351 R 351
>gi|302188385|ref|ZP_07265058.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
Length = 353
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 126/361 (34%), Gaps = 14/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILV-FVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M L RY K L L L + LV + + + + Y+++
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVS-LFAFIDEMGDISDT--YTLADALSYVMLTA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV
Sbjct: 57 PRRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E + +GD Q + W + + I + N +
Sbjct: 117 GEYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDG 236
T D++ ++ A A D +LK V + + +T ++ +
Sbjct: 172 TRYRFDEQRHMLTSSFAKEANFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALSPQL 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 232 LSTVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF I ++ P+ A L+P +L+L
Sbjct: 291 GPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLR 350
Query: 357 Q 357
+
Sbjct: 351 R 351
>gi|114331101|ref|YP_747323.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
gi|114308115|gb|ABI59358.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
Length = 352
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 117/359 (32%), Gaps = 10/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +RY L + + + L DL + + +G+ Y+ + A +P
Sbjct: 1 MKICYRYIALQVLTGMIIATVVLLPLFSFFDLLDQLDDVGK-GTYTTRDAFLYTAMLMPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
QI PFI L+ + L + ELV R G S + + L T+ +
Sbjct: 60 RFIQIAPFIALLGTVGALGGLAVSLELVAMRVAGFSPLMISLAPIGIGGGLITSTIALEY 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ I L + + + W + + ++L + +
Sbjct: 120 LVAPQFQQQAIVLRAVALEQSAELGKGLGIW----TRNEQNILRIGEMLHKGRAIDIEVM 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQ 238
+ H I KL V + I + + +
Sbjct: 176 HFDKQGLMTAHIHAQYADIFDKSMWKLHDVTVRMFAPDRIFSRKVHALQWHSFLGPEDIA 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ S + E++ F + + + + +M +AM LIA
Sbjct: 236 TLTKPPESLTPLELLHHAEFLKMTGQKADA-YVMALWRKVGSVVMTIAMILIAIPFIFGS 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R +V + G +Y + I+ + G L P+ ++ P + I ++ LL+
Sbjct: 295 VREGLGGKLVLASLM-GISIYLLDQIIANIGLVFQLNPIVVSIAPGSILIVIAAYWLLR 352
>gi|311745737|ref|ZP_07719522.1| membrane protein [Algoriphagus sp. PR1]
gi|126575180|gb|EAZ79530.1| membrane protein [Algoriphagus sp. PR1]
Length = 357
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 48/353 (13%), Positives = 116/353 (32%), Gaps = 2/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L + K +LKT + +L +++V V+D E + +
Sbjct: 1 MKLLDKLIIKDFLKTYFFVVLMLILIVLVLDFTEKNDSYI-RNDVPSGEIMKYMINYGLY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P + I + + +E++ + G+S ++L PF+ ++L+G + L+
Sbjct: 60 LNNLLTPITVFISVIFITSKMAGRTEIIAILSSGVSFPRMLRPFIFAAMLIGGVSFLLNG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + D + ++ + K H +
Sbjct: 120 WVLPVATEGVTKFKLTYIDKTRTASDPNVHIKVGTDSYAYLSRFYKTGNTGYHFTLETIR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
R D A + ++G + I D F
Sbjct: 180 DGRLINKLSSDRIQWDTAKNVWTLKNWRFRELNEFGEDYSVGEEMDTTLSITPDDFDLPE 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ +++ + + + Y + P + +T I +S + SR
Sbjct: 240 NHHETLKLPELSRQIRVLEDRGADNVAFYKIERYVRFMSPFAAIILTFIGVIMSAKKSR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+A G F+ + + ++F ++G P+ A +P I+ +++
Sbjct: 299 GGSGFQIAMGFLLAFIYILLFILSRTFAENGASYPIFAVWLPNIVFGLTGLVL 351
>gi|330950945|gb|EGH51205.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
Length = 353
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 71/361 (19%), Positives = 124/361 (34%), Gaps = 14/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILV-FVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M L RY K L L L + LV + + + + Y+++
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVS-LFAFIDEMGDISDT--YTLADALSYVMLTA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +P L+ ++ L +SEL I RA G+SI +++ + +LL I VLV
Sbjct: 57 PRRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E + +GD Q + W + + I + N +
Sbjct: 117 GEYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDG 236
T D + ++ A A D +LK V + +T ++ +
Sbjct: 172 TRYRFDDQRHMLTSSFAKEANFKTDYWELKDVTTTHFNDGSTKVINTPVERWDVALSPQL 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 232 LSTLIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS V G+ GF I ++ P+ A L+P +L+L
Sbjct: 291 GPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLR 350
Query: 357 Q 357
+
Sbjct: 351 R 351
>gi|218508596|ref|ZP_03506474.1| putative permease protein [Rhizobium etli Brasil 5]
Length = 239
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 2/240 (0%)
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G++ + + W+ + IPW++ + + D+ IGA+ + D
Sbjct: 1 MPAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVL 60
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 61 IHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQERL 120
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VSL+FSR
Sbjct: 121 TAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVSLKFSRF 179
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +EDG
Sbjct: 180 NQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQEDG 239
>gi|157363796|ref|YP_001470563.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
gi|157314400|gb|ABV33499.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
Length = 1102
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 57/355 (16%), Positives = 122/355 (34%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL +Y K + L L G + + +++ + + I + +P
Sbjct: 1 MGILTKYIIKLSVGPMLIGLAGFV-IFVSVEILYQLSDLIVRHRVGIFVLLKVLYYYLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L+ V L+ EL+ + GIS+ L+ PF++ SI L T ++ +
Sbjct: 60 FVALGIPVGILLSIFWVLSQLSTDHELMALQVHGISLKVLIVPFLILSIALSFVTYVLSD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + +I ++ + +I Q + F +
Sbjct: 120 RIVPLYNQKADSVISKYVYKRPEVFISENVLTKIDESQYFYVKKYDRQNGILEDVVLFRN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+++ + + + K+ +V + R I N L++ ++ +
Sbjct: 180 EPSEEEIITAKKVVKEKNKWFMYDGKMYRVDKDGVLRFDISFNKVELDLQEDIESIMRVG 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ +++ K + + + + L V + LI +SL F+
Sbjct: 240 KTPKDMRSEELKERIDTFKKLGV-DPAPWIVELHTRYSLSLGPVIIVLIGIPLSLMFN-L 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
V + + + GK ++ PV +A IP + L+ L
Sbjct: 298 KSKSWGVILTFVIVVLYQGSGAWLGAMGKERLVDPVTSAWIPNTIFGVTGALLFL 352
>gi|323697853|ref|ZP_08109765.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457785|gb|EGB13650.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 375
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 130/356 (36%), Gaps = 6/356 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L L L + D+ + + ++P
Sbjct: 1 MIGVLSRYLIRQNLYLMAICLAVGTSLYLLSDIFDRLDDFI-RAGLGAQTILFYFIVKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+ Q++P + L+ +V L R+ E++ RA G+S + FV+ +++ ++
Sbjct: 60 LIVSQLMPAVFLLAMVVQLGVLARSREMLALRAGGVSFAWFIRFFVIYALIWSCGQLVFS 119
Query: 121 NPIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ GE+ + ++ + + + W + + I
Sbjct: 120 QFLGVFGEQEANRIWKEDVRKKQLDELTIHNLWFRDGPFIVQAKEAQPSKSRASDITIYE 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + +I++ K A + + + ++ + + ++ +K +
Sbjct: 180 FTTDNQELIRILNAKKALIDDHGWGLLDVHELDTRTFITVDRPSQFLSVRQNLKAYAAVE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A E+ + ++ +S + T ++ + +V M L+A + +
Sbjct: 240 LKGDTAQLPLIELSRAIARLQESGS-NVEMLLTIWHGKLSYAFSMVVMALLALVLV---T 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
S + + F+ Y + + + G+ G+L P+ AA + + +L+ L L
Sbjct: 296 FSENVYANIGLALILIFIQYGMHVVGATAGEKGVLPPILAAWLGNGIMAALASLRL 351
>gi|332524895|ref|ZP_08401082.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
gi|332108191|gb|EGJ09415.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
Length = 370
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/367 (13%), Positives = 115/367 (31%), Gaps = 17/367 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R ++ + + ++ L + L F IDL E +G + + A +P
Sbjct: 1 MRTVRRLLYRDIVASVVFVALAFLSLFFFIDLVEKMGNVG-RAGRTTGVAVMSALLELPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ I L ++SE I R G+ + L+ V ++ G T V +
Sbjct: 60 HFYELMPIAVLIGTIYSLARLAQSSEFTILRTGGLGPGRALSLLAVLGVVFGAITFAVGD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----QQDIFIGAKKILPENHIWE 177
+ E+ + + + W++ ++ + P+ +
Sbjct: 120 YVVPVAERKAVAVKALAAGG--MRVGRTGAWLKEKRMTPEGERSYSVNLAGTTPDGRLSG 177
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---------STTL 228
+ + + L + ++ + + +
Sbjct: 178 IRIFEFDADGRLSVRIAAKTGTVAADGTWTLSEAEVTRWPDVRLREPAGVVEQRLPELRW 237
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + + ++ + + E F+ + PL + MT
Sbjct: 238 ASTLTPEVVAAAVMPRETMTTADLWRYSVHLSDQAQATQS-YEILFWKKALYPLACLVMT 296
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+A + +R+ + V GI G + + G P AA P +L +
Sbjct: 297 ALALPFAYLHARAGSVSLKVFGGIMLGISFVLLNNLAGHVGLLRDWTPWIAAATPSLLYL 356
Query: 349 SLSILIL 355
+S+
Sbjct: 357 LMSLAAF 363
>gi|167645642|ref|YP_001683305.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348072|gb|ABZ70807.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 354
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 10/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y + L L ++ ++DL E+ + + + AA R P +++
Sbjct: 3 IQLYVLRTVGTRVLGAGLILFSILQILDLLEVTTDIIDR-GLGTAGVLYYAALRSPRLVE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ P TL + F L R + ++ RA GIS ++++ + L+ IA
Sbjct: 62 QVAPLATLAGGLFAFSQLARENAIIAMRATGISAYRIVGMALPVVFLVMALDFSCAQIIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ W +P + D+ I A +
Sbjct: 122 PRTDP----VLADWWQATTPAAERKVPGPRSFRAGDDLVIAAGASADGGTLNAVKIYRRD 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFS 241
I + + L K V ++ ++ + P+ Q
Sbjct: 178 KIGRLIERIEAPSASYNSGGGWTLAKPVIVRFKGEQVNVVPAAQLSWPSPLHRQDVQALF 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + ET+F P + M L++A V+L RS
Sbjct: 238 ADSPVPTAATARRAL--LSGGGDRPAAFYETRFLSAFAGPFAALVMLLLSAPVALANFRS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
Q ++A G+ +G + + ++ + G+ G L P+ A ++ +L++ L+ E
Sbjct: 296 GQGAGLLAGGLAAGLLFLVVNGMLSALGEGGSLSPILAVWGGPVIFAALAVYALVVLE 353
>gi|262376977|ref|ZP_06070203.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
gi|262308015|gb|EEY89152.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
Length = 356
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 112/354 (31%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ + L L + + + Y P +
Sbjct: 6 IVAKHVTQTTALAMLGATAVLAGLQVLFTYLGELGSLKD--GYGAWDALKYVLWGAPNYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ ++ L SEL++ R++G+S+W+++ + ++LL + + + +
Sbjct: 64 YEILPISALIGAVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALLLVVLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + I + +N DF
Sbjct: 124 IPYTNEQAKSVKS--ASKAAQLGEVRGYWTREGQRFIYIDYANSQGQLKNVQMLDFDQNY 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + + L + ++ +
Sbjct: 182 RLRGTLQADQGQFVKDGSWTLDNTEQFDILQNGNATLVKQQQQPLALALQPKYVHMVTID 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +++ MS+ ++ + + F+ + P L+A+ +IA S R
Sbjct: 242 PEDLSPSQLVSFMSYMHEYSQVPKT-YQLAFWQKLGSPFALIALVVIACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F+G + + + P IP+++ + +L +
Sbjct: 301 MGFRLVIALFAGLGFFYLQDFLGYASLIYAPSPAWFVFIPILIMFGIGGYLLHR 354
>gi|213962435|ref|ZP_03390697.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
gi|213954761|gb|EEB66081.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
Length = 358
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 124/357 (34%), Gaps = 3/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T ++ + + ++DL+E ++M E ++ + +
Sbjct: 1 MKILDWYILKRYLLTFFIMIVLFIPIGIIVDLSEKVDKMIERK-APMNEILWYYLSFIVY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 60 FANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + N + + + +
Sbjct: 120 FIVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQEQKGYNFSVEHFD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K+ + K + I + ++ K D
Sbjct: 180 GIKMKEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDILVKRDQLDTIFNFKPDDLMPME 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ +E+ K + + Y +TLI +VS R
Sbjct: 240 YTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSSVKKR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILILLQ 357
I + G+ GF + + + SG L P+ A ++P ++ ++L+IL+L +
Sbjct: 299 GGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVVLPNLIFLTLAILLLRK 355
>gi|217967689|ref|YP_002353195.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
gi|217336788|gb|ACK42581.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
Length = 356
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 52/355 (14%), Positives = 123/355 (34%), Gaps = 4/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RYF + ++ LL ++ V L I + + + L T++P
Sbjct: 1 MKIISRYFLQNFIPVFFVGLLLFTTILLVSPLF-IIMDLVVARSIPLKTALELFITKIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + + V + E++ +A G SI L ++ S+ + V
Sbjct: 60 YLTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILMFSLSAQLIMFYVNE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + L+ + +N + + + + ++ + K E+ + +
Sbjct: 120 FVAPKAYEREKILMNKAYNNVIMPSRENVFFNENNSFYFFRKVDPKNKKFEDILLIELLE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGFQKF 240
+ + D + + + I + +
Sbjct: 180 KGNVRLIIHAEKALWDEFKGWTFMNGEVYSLNKEGEMIFQGKFKEYKVTLNRAPYQLVPS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S+ S +EI+ ++ + + +T+F+ I +P ++A + L +
Sbjct: 240 SKPVEEMSIFEIVDQIRLLEGTG-LNLNNLKTEFHIRIALPFTCPIFAILALGLGLNMGK 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + S F+ Y I +I +S K+GI+ A + I+ + + I +L
Sbjct: 299 -GGRSLSFGLSVISIFVYYIIFSIGRSLAKAGIVPYFLGAWLGNIVFLIIGIYLL 352
>gi|77457217|ref|YP_346722.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
gi|77381220|gb|ABA72733.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens Pf0-1]
Length = 373
Score = 109 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 116/361 (32%), Gaps = 16/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAA-AGQLDPGSLFLIMGYRLPGFM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLFRMTLFPATLVAVVVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-------IGAKKILPENHIW 176
A G L+ + + + + + + + + + +
Sbjct: 121 APQGANQFQLLLNKQDALTEFDTLEPGRFQALRDGTRVTYTETLSDDRVNLGSVFISQKN 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + ++ N + L Y + + +
Sbjct: 181 LGANQKDRGISVLVAEKGRQEVRPDGNRYLILDNGYRYDGSPGQANYRAIHYETYGVLLP 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
SE+ R + + R++T+ + + +PL++ +TL+A +S
Sbjct: 241 KPDVSEEVTDRDAMPTSSLL-------GSDDIRSKTELQWRLSLPLLVFIVTLMAVPLSR 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + I TI+ + + G + P + +++ + +L
Sbjct: 294 VNPRQGR-FLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLTIGLGLLY 352
Query: 357 Q 357
Sbjct: 353 W 353
>gi|120599782|ref|YP_964356.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|120559875|gb|ABM25802.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
Length = 370
Score = 109 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 120/357 (33%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + I + + S L +P ++
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASD-GEFPASLIVTLIGLNIPALV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
E+ ++++ + + N + +F+ E +
Sbjct: 121 TPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPE 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ T + + +++L V YQ D Q
Sbjct: 181 PSDETGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + A +F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALTVTDLLK-------VESAEAVAEFHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ + + ++ + + G++ + + + I +L
Sbjct: 294 VRQGKFAKMLP-AVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFLL 349
>gi|282880317|ref|ZP_06289031.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
gi|281305819|gb|EFA97865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
Length = 391
Score = 109 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y K ++ T ++ + + + V D NE ++ E + A +P
Sbjct: 32 KRIDWYIIKKFIGTYIFSIALIIAIAIVFDFNENLSKFTEYKAPVRAIIFDYYANFIPYF 91
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A GIS +L+ P+++ IL+ + +
Sbjct: 92 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLATGISFKRLMRPYMISCILIASVSFFLSAY 151
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G + + +K+N + +D + I K D
Sbjct: 152 VIPHGTVVRQNFDNLYKNNKKRSAADNVQLQVDKGTIAYIQHYDNKTKRGYGFSLDKFKD 211
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
+ D + + + S I ++
Sbjct: 212 KKLVSHLTAMEIQYDTIADAKYHWTVTGWKIRELKGLREHITSGAERDTVIMMEPMDLVY 271
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E+ + +S + + + +++ I +T+I S+S
Sbjct: 272 SKGQQETFTSPELREYISKQVNRGSGNVVQYQVEYHKRIASSFASFILTIIGLSLSAR-K 330
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F+ + TI +F + P+ AA +P IL ++
Sbjct: 331 RKGGMGLYLGLGLALSFLYILLQTISATFAINADAPPMLAAWVPNILFSVVAYF 384
>gi|312879634|ref|ZP_07739434.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
12260]
gi|310782925|gb|EFQ23323.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
12260]
Length = 337
Score = 109 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/337 (11%), Positives = 116/337 (34%), Gaps = 7/337 (2%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+L+ +L + S+ L +P ++ IP +L+ ++ F L+
Sbjct: 1 MLLVAGNLLFKIADLVIQRGVSLGVVVRLFLYYLPGVVVLTIPMGSLLAALLGFGRLSAN 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
E+V +A G++ +++ P + S+L+ + ++ + + E+ ++L++
Sbjct: 61 VEIVALKAAGVAFQRIVRPVIWASLLVSLGSMALNETLVPLAERAAVNLLRYEVMQETPP 120
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+++ + + + +++++ A +
Sbjct: 121 LFKERIFLKEEKDGHLKRVIYINRMRPRSGKMADILVQEFEEDRLSRIIAAPRGEWVRGE 180
Query: 206 VKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
++ ++ L + + + S + +++ +
Sbjct: 181 WWIEDGKVFEVDAQGKVRLLFTFRKQGLQLHLNPKEVETQSLDPQQMNLFQMRDSIRRLE 240
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R + +P V + L+ A+ RS+ + + F Y
Sbjct: 241 EQGA-DATRLRVLLNLRLAVPWASVVLALVGAAAGSRPQRSSSSVGLGLSVVIVFF-YYV 298
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ +S G++ L V AA P ++ + L ++ +
Sbjct: 299 TLSFCQSLGEASYLPAVVAAWFPNLIFLVLGGFLVRR 335
>gi|91792232|ref|YP_561883.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
gi|91714234|gb|ABE54160.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
Length = 370
Score = 109 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 45/357 (12%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY LK LL + + + + S L +P +
Sbjct: 2 IVFRYLIAEVLKAQFAVLLVLLTIFISQQFVRVLADASN-GEFPASLVLTLLGLNLPQLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + +E+V+ ++G+S W + ++ ++ +FT ++ +
Sbjct: 61 LLILPLSFFLGILLAHGRMYAENEMVVLHSVGVSEWYVARVTLLIALANLVFTCVLSMYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
+ E+ ++++ + + N + +F+ + D
Sbjct: 121 SPWAEERQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVEKISKDNQLSKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + I + +++L++ V YQ + Q
Sbjct: 181 PDDKEGMSNVVVAQQGRVIEDSIGSQQLQLERGVRYQGSPQGLAYQVIEFGGYRMEIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + N A +F++ IPL + +TLIA ++
Sbjct: 241 EVDERRRKLSALS-------MEQLNDTQGPEAAAEFHWRFAIPLSIPLLTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ + + ++ I + + + +L
Sbjct: 294 VRQGKFAK-MFPAILLYLGYFGLMIAGRKALEDEVIPEYLGMWWIHISVLLMGVFLL 349
>gi|262038173|ref|ZP_06011570.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
gi|261747821|gb|EEY35263.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
Length = 366
Score = 109 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 122/362 (33%), Gaps = 13/362 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + +++ + ++ + L E ++ + VP
Sbjct: 1 MKIIDKYIYNSLILPSVFGISIFTFILMLNVLIEAMERLF-ASDLPFLSVVDYFFYVVPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++V+ L+ T+E++ GIS+++++ P + ++L + +
Sbjct: 60 ILVQTIPMGAFLGVMLVYGGLSETNEIIAMEGSGISLFRIIRPAFIFGLILTFIGLGLEI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + ++ ++ NP++ K+ + F
Sbjct: 120 YVNPRALENINKQTKMLLATRPNSLTEEKIFLT--NPEKGFGFYIDKVDNKKATASQFLL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM------- 234
+ N A A + L V Y + + + +
Sbjct: 178 LNKQGNNPYPVIFLAKSARFDPGVIVLSDVKGYSFDKEGNSQVAAEYKEQNVPVSTFFTS 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFS--NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ ++ + + E+ + + + N +A + Y ++ PL V + +
Sbjct: 238 EEGEQRQKKRSEMNLKELREFYNNNIGNPEMKEAALKALIESYQRVIGPLASVFLCWLGV 297
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ RS + I + F I+ K + A IP + L +
Sbjct: 298 LLSVGNRRSGK-GISFGISLIVIFGYIAIVNYAKIMILKNNVPVSIAMWIPNFILFLLCV 356
Query: 353 LI 354
Sbjct: 357 YF 358
>gi|206900512|ref|YP_002251020.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
gi|206739615|gb|ACI18673.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
Length = 356
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/355 (15%), Positives = 123/355 (34%), Gaps = 4/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +YF + ++ LL ++ V L I + + + L T++P
Sbjct: 1 MKIISKYFLQNFIPVFFVGLLLFTTILLVSPLF-IIMDLVVARSIPLKVAFELFLTKIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + + V + E++ +A G SI L +V S + + V
Sbjct: 60 YLTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILVFSFSVQLIMFYVNE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + L+ + +N Q + + + + +N + K E + +
Sbjct: 120 FVAPKAYEREKFLLSKSYNNIAVQSRENVFFNENNNFYFFRKVDPKNKRFEEILLIELLE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGFQKF 240
K + D + + + I + +
Sbjct: 180 RGNIKLIIYAKKATWDEIKGWTFMDGEVYSLNKEGDMIFQGRFKEYKVVLDRNPYQLVPS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S+ S +EII ++ + + +T+F+ I +P ++A + L R
Sbjct: 240 SKPIEEMSIFEIIDQIRLLEGTG-LNLNNLKTEFHIRIALPFTCPIFAILALGLGLNMGR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + S F+ Y + +I +S K+GI+ A + I+ + + I +L
Sbjct: 299 -GGRSLSFGLSVISIFVYYVLFSIGRSLAKAGIVSYFLGAWLGNIIFLIIGIYLL 352
>gi|282860071|ref|ZP_06269152.1| putative membrane protein [Prevotella bivia JCVIHMP010]
gi|282587159|gb|EFB92383.1| putative membrane protein [Prevotella bivia JCVIHMP010]
Length = 405
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 117/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L Y K ++ T ++ +L + + V D NE ++ + + A +P
Sbjct: 46 GTLDWYIIKKFIGTYIFAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ IL+ + T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEVIAMLAAGVSFKRLMRPYMISCILISVLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +++N ++ + N I
Sbjct: 166 VIPHGTVIRQNFESLYRNNKKNTSAENVQLQVAKNTVAYIQHYDDHYKRGYGFSLVKFEN 225
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQK 239
+ D K+ + + T + ++
Sbjct: 226 KKIVSHMTAMEIQYDTVADTKYHWKVSNYKIRILRGLKEHITTGTEKDTMLLMEPTDLVY 285
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S + + E +F+ I + +T+I S+S
Sbjct: 286 SKGQQETFTSPELLNYISKQTSRGASNVVQYEIEFHKRIAMSFSAFILTIIGLSLSAR-K 344
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP ++ ++
Sbjct: 345 RKGGMGLYLGIGLGLSFGYILLQTVSATFAIQANTPPILAAWIPNVIFAFIAYY 398
>gi|109899862|ref|YP_663117.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702143|gb|ABG42063.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 368
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 119/357 (33%), Gaps = 10/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K +K+ L M + + ++ + S A +P++
Sbjct: 2 LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASN-GDIPASLVLGFLALSMPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ L SE+ + RA GIS W + +V ++++ + T + I
Sbjct: 61 SLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG---AKKILPENHIWEDFT 180
A + L +Q + + Q +N + IF+ +
Sbjct: 121 APLSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHD 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ T + +++ K L + + L QY +K+ + +
Sbjct: 181 TTTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQ 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ R + + A + + IPL L + +IA +S R
Sbjct: 241 EAEQKRRKLSAYTT-----MQLFEDSSIDAIAELQWRFAIPLSLFFLVIIAVPLSAADPR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + ++ + + G + P+ + + + ++ +
Sbjct: 296 QGRFGK-MFPALMLYLGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGIIGMTLIFK 351
>gi|298529509|ref|ZP_07016912.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510945|gb|EFI34848.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 355
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 139/361 (38%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L T L ++ ++D N M E + ++PL
Sbjct: 1 MSVLNRYLLRQNLFYTAVLLFSGTMVYLIVDFVGRMNAMVE-AGLGALQVLEYFVFKMPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q +P I ++ ++ ++R++ELV + IS + F+ ++++ + +
Sbjct: 60 IVAQTLPAIFMLGVLIQMAMMHRSNELVAMESSAISFRKPAVFFIGYALVVFMLLFVFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ GE++ + Q + + + +D I ++ +DFT+
Sbjct: 120 TLGVRGEQVTRQIWNQDVRDREAAVEG---LEDVWVKDRDYMIHIERAHINEGRGKDFTA 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
KI A ++ +++ L+ V ++ R + + + I ++
Sbjct: 177 YKKSDPGKIQEIIKAPEFEVHKNRLLLRDVTVFKPHSLERQSLQEMEMEVKIDLRSFALV 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S + + ++ +S + T + I P LV MTL+A ++ F
Sbjct: 237 DSDLPYQAWSIFTLSALVNQLKESGA-SVEKISTALHSKIAYPFALVVMTLLALAL---F 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R +V G+ F YT+ S+ + G+ P A + LS+L L
Sbjct: 293 TRIKNIYALVTLGLVIVFFYYTVYVFGVSYAEEGVTAPFVGAWTANVFFGILSLLQLFWM 352
Query: 359 E 359
+
Sbjct: 353 D 353
>gi|294139610|ref|YP_003555588.1| hypothetical protein SVI_0839 [Shewanella violacea DSS12]
gi|293326079|dbj|BAJ00810.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 370
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 116/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP + ++ + SE+VI +G+S W + ++ ++ IFT ++ +
Sbjct: 61 VLVIPLSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTAMLSVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
E+ +++ + + N + +F+ E D
Sbjct: 121 TPWAEERQNQVLENAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELQKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +++L V+YQ +D Q
Sbjct: 181 PDDESGMSNIVVAEGGKVIEDDTGGQRLQLSDGVQYQARPKHVDFQIIEFGGYQMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E+ S I M + F++ + IPL + MTLIA ++
Sbjct: 241 PVDERRRKLSAMPINDLMDIDGPAATAE-------FHWRLAIPLAIPLMTLIAVPMARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ + + G++ + L IL+L
Sbjct: 294 VRQGKFAK-MFPAILLYLGYFGLMIAGRKALEDGVVPEYLGMWWIHASALFLGILLL 349
>gi|209694120|ref|YP_002262048.1| putative permease [Aliivibrio salmonicida LFI1238]
gi|208008071|emb|CAQ78212.1| putative permease [Aliivibrio salmonicida LFI1238]
Length = 370
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 116/356 (32%), Gaps = 14/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K LK+ L ++ +I + + L +P +
Sbjct: 2 IIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASD-GDIPGGLILSLVGYNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + +++ G + +
Sbjct: 61 LLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ L++ + + + + + + +FI H+ F +
Sbjct: 121 SPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVFIDDISDKGGKHLVNIFLAQP 180
Query: 184 IDKKN-----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + I + + L Y+ +D + + G +
Sbjct: 181 VPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ + + + A+ + + I + L + +T++ +S
Sbjct: 241 EVKEKRRDWDALPTLDLIKRTE-------LEAKAELQWRISLILCIPLLTMVVVPLSAVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A I + ++ KS + G L P + + + I++
Sbjct: 294 PRQGRFAK-LAPAILLYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLIIGIIL 348
>gi|331007486|ref|ZP_08330657.1| putative permease [gamma proteobacterium IMCC1989]
gi|330418710|gb|EGG93205.1| putative permease [gamma proteobacterium IMCC1989]
Length = 362
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 128/368 (34%), Gaps = 18/368 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y F+ + + L LL L + L + + P Y+ + + +P
Sbjct: 1 MRLLNAYIFRTTVVSILVVLLVITALDILAKLIDELGNLT--PAYTFAEALIYVVLAIPS 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q +PF LV +V +L TSELV+ RA G+S+ +L + + ++
Sbjct: 59 SFYQYMPFAGLVGGLVGLGSLASTSELVVMRAAGVSLLRLTWAVLKPVLWFIAAMLVFAE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ G+ S ++ + N T
Sbjct: 119 YVIPVSDQYAESRRSALLQGGNTALSAKG----GVWNREGTLFMHFNSVQANGKLLGVTR 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-----------STTLNI 230
D K ++ A+ A+ D + + VVE ++ + S
Sbjct: 175 YQYDDKQRLTLASFAETALYTADGWREENVVETRFLDAQSSSDKEALITTATYPSRPWQT 234
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + + + ++ + K N N + ++ ++ PL+++++ L+
Sbjct: 235 ELSPNLLTILVQDTDNLAITKLYDYAQYLEKQN-LDNGKYLLAYWGKVLQPLVIISLVLV 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A S R + G+ G + ++ + P+ A L+P++ +
Sbjct: 294 AISFIFGPLREVTMGYRIFTGVVVGIVFQLTQKLLGPASLLYGISPLFAVLLPILFCFGV 353
Query: 351 SILILLQK 358
+ +L +
Sbjct: 354 GLFLLART 361
>gi|228471152|ref|ZP_04055971.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
gi|228307092|gb|EEK16166.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
Length = 361
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 130/354 (36%), Gaps = 9/354 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 8 TVDRYIFIQFLATYFFSIVLILAVAIAFDVTEKLDRLLQPDVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ ID ++ + ++ I + F+ E+ + F+
Sbjct: 128 IPPGNRVRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ K+ + +L+ +G N IPI F
Sbjct: 184 FEGKDLKSRVMANSIIYDTLYNWQLQDYTITYFGERQDTLFRGNQLDTIIPITPRDFLVT 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ E+ + + + I + +TL+ S+S R
Sbjct: 244 EGDVEMLTTPELYHSIQQQRMRGAATQL-YAIELHKRIAMIPASFILTLMGVSLSAR-KR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +A G+ F+ +T+ SF +G + PV AA +P ++ + +S ++
Sbjct: 302 KGGMGLALAVGLSLSFIYILFMTVTASFAVTGAMAPVVAAWLPNLVYLGISFVL 355
>gi|257468007|ref|ZP_05632103.1| hypothetical protein FulcA4_01647 [Fusobacterium ulcerans ATCC
49185]
gi|317062293|ref|ZP_07926778.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313687969|gb|EFS24804.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 358
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/365 (12%), Positives = 118/365 (32%), Gaps = 13/365 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + L+ + + + + + + SI + + +P
Sbjct: 1 MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVK-GISIIDIMRILSFYLPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F RTSE +IG+ + ++ P + + +F +
Sbjct: 60 ILSQTIPMGIFLGVMLTFSKFTRTSEATAMSSIGMDLRGIVKPIFILACATTLFIFFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + +I ++ + +
Sbjct: 120 SIIPRSFSKLQYITTKIAYENPVFQLKEKTFIDEVEE---YNLYIDRIEGKDRVAQGVLI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
++ + A + + + Y + + + + + + DG
Sbjct: 177 FQKNEDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLDAYFDG 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S ++K+M ++ + + + +PL + ++L+ +S+
Sbjct: 237 IDIKVKDIEAMSISMLLKEMKDLPQNEKIP---YKVEINRKLALPLSTIMLSLLGVFISI 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + A + F T + I G + P P I+ ++
Sbjct: 294 GHHRSGK-GANFALSLVVIFSYITFLNIGMVMANRGKIPPFVGVWTPNIILFLVTFYFYK 352
Query: 357 QKEDG 361
+K G
Sbjct: 353 KKSRG 357
>gi|317486217|ref|ZP_07945051.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922516|gb|EFV43768.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 385
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 122/364 (33%), Gaps = 10/364 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L R FK + + + L+ + ++ + I +L P
Sbjct: 1 MPSLLQRQIFKEIANLFVLAVGVLLTLILISRAV-QMRELFLGLDLGILDTVLLFGYMTP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L + +IP ++ + F ++ ELV RA GI+I+Q+L ++ S++ + T+ V
Sbjct: 60 LFLMLVIPIACMLSVFLTFLRMSTDRELVALRAGGINIYQMLPAPLLFSVICMLLTLWVS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G + I + + + + +
Sbjct: 120 LHWLAWGMGHFRETILEIANTRARVVVQPGVFNTDFPNLVLFARQVNPGDGDMSQVLVDD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRI-----PIDKNSTTLNIPIK 233
++ I+ + + L+ Y + D+ L +
Sbjct: 180 RSHPERHMTILAPEGRFDTDTERGELVFLLEDGKIYTTDKKGASVLAFDEYKVRLPLDSL 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAMTLIAA 292
+ S+ ++ + + E + + P+ +A+TL
Sbjct: 240 FKSLDLGDVRPREMSWSKLSSITREEALKVDANYANKLEVERHKRWAYPVACIALTLFVL 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ F ++ + + F+ Y+++++ S G+SG + P +P IL + L I
Sbjct: 300 PLASAFEGLHRQT-GLMLALAMFFVYYSLMSLGFSTGESGAIPPSIGLWVPNILFLCLGI 358
Query: 353 LILL 356
L
Sbjct: 359 YGLW 362
>gi|297171530|gb|ADI22528.1| predicted permeases [uncultured Oceanospirillales bacterium
HF0500_09M11]
gi|297182284|gb|ADI18453.1| predicted permeases [uncultured Oceanospirillales bacterium
HF4000_13G19]
Length = 353
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 126/357 (35%), Gaps = 11/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RYF++ L +L + + L + + Y + + T VP
Sbjct: 3 LLKRYFWRSVLLPSLAIVAIIVGLDCLFSFIYELEFL--RGGYQVMQALQFVLTTVPRRF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ + + EL + RA G+S Q+ + I L + ++ V +
Sbjct: 61 HEYLPMAILLGTLIGLGLMANSGELSVIRAAGVSTLQVSWMVLRPVIFLMLLSIPVGEYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E++ + G+ +S+ W + + I + N + T
Sbjct: 121 APYTEQVAQSNRSLQEGGGEALRSEYGFWHREGDEFIHINT-----VQPNGVLYGLTRYR 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKF 240
+ +++ + + A+ D L+ + ++G + + + +
Sbjct: 176 FNDDHQLEESQFVERALYQGDHWTLQNIQGTRFGDDRTETYTEGGGRWDTSLTPQLLSIV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + ++ + + + + +++P + M LIA S R
Sbjct: 236 VLEPRRLAMAKLWNYTRYMKEQGLQSADYMLAF-WQKLLMPAATIGMVLIAISFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A GI +G P+ AA +P +L + L I +LL+
Sbjct: 295 EVTMGLRMAAGIVAGLTFNYGQQFFGHLSLVFRTEPLLAAGLPPLLCLVLGIWLLLR 351
>gi|330811514|ref|YP_004355976.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327379622|gb|AEA70972.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 373
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/362 (12%), Positives = 116/362 (32%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLDSEMTVLSATGMSQQRLFRMTLFPATLVALVVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK--------ILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGATQFQLLINQQDAMTEFDTLVPGRFQALRDGTRVTYTEQLSDDRIDLGGVFITQKN 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + ++ N + L+ Y D + + +
Sbjct: 181 LSSDAKKDRGISVLVAEKGRQEINPDGNRYLILENGYRYDGKPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S++ R + + RA T+ + + +PL++ +TL+A +S
Sbjct: 241 PKPEVSDEVTDRDAMPTASLLGN-------DDIRARTELQWRLSLPLLVFIVTLMAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I TI+ + + G + P + +++ + +L
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTILISARGALEKGKIPPALGLWWVHSIFLAIGLGLL 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|297170682|gb|ADI21706.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
HF0130_14P10]
Length = 392
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/394 (13%), Positives = 116/394 (29%), Gaps = 42/394 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY +LK L+ L+ + D + A A VP
Sbjct: 1 MSTLDRYILAEWLKVFGVSLIVLTGLLVLQDAADHAEDF-RQGFAGAGEVATYYAWLVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P V + V L R +E+ + RA G+++ +L +V ++LL + +
Sbjct: 60 YLPWLLPIALFVSTLFVVATLRRNNEIAVLRACGVNVLRLSRSLLVTALLLSALSYGLNA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L++ + D + M + F + + S
Sbjct: 120 KWSPLAMEKSQGLLEVLRGKSDHRNFVSNFDMSPPKTNRRWFFRKFFAVTSSGAGVHLYS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY------------------------- 216
T ++ R + + + +
Sbjct: 180 RTTGGRDSFRIRAEKAF-RDEDGCWRFLNGRFIGFAGPRGLPVPSESGEGLVWEAEFAEQ 238
Query: 217 ----------GRIPIDKNSTTLN-IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ +S L + + F ++ + S E+ + S +
Sbjct: 239 DSSSDGFSSVPILNKQFSSLRLPDVREDPEPFLLMRKKPSELSVRELKTIVDASEVTEGN 298
Query: 266 HNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
R + P + + +L VA + Y T
Sbjct: 299 AAVRPYAIRMGHAFWASP-GCLLAVALGIPFALV-GNGRSAAAGVARALGLCVGYYVART 356
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ S G++GI+ AA +PV+L +++ L +
Sbjct: 357 MGDSLGEAGIIPIEWAAGVPVLLLGIVAVWFLWR 390
>gi|298529508|ref|ZP_07016911.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510944|gb|EFI34847.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 390
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 112/362 (30%), Gaps = 10/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL R K L L + L+ + + + + + I P
Sbjct: 1 MKILHRQIIKEVGTIFLVTLASMLSLIVIGRMID-LKDIFVGQSIQILYVIKSFFYLGPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IP ++ + F ++ EL + GISI L+ ++ S+ FT+ V
Sbjct: 60 FLSMVIPIACMLSIFLCFLRMSSDRELTALQTSGISIRSLVLSPLLFSLGAMGFTLYVTL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + G + + + + ++ E
Sbjct: 120 HLTSWGIDNFRETAVEMVREQTEVSMQPGVFHRMIPDMAIYVHNRDPGTSELKEVFISDD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPID-----KNSTTLNIPIKM 234
+ I+ L+ + L Y+ + + L++ +
Sbjct: 180 TVPEAPLTIVAPTGRMLSDKEEGMLYFILDDGRIYRQDQEEHSLVSFGEYRLRLDLFSLL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ S+ E+ +++ A + + +PL + + L A +
Sbjct: 240 GDAGLRDKRPEEMSWGELQAY-KDDAQADSRQYRLAVLEEHKRFSLPLACLILGLFAVPL 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L + + + + Y++ T + G++G L P A +P I + L++
Sbjct: 299 GLTLQGLGRN-WGLLLAMSCFLIYYSLFTAVYGLGEAGTLNPDLAMWMPNIFFLVLTLGG 357
Query: 355 LL 356
Sbjct: 358 FY 359
>gi|262370180|ref|ZP_06063507.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315219|gb|EEY96259.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 356
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/354 (12%), Positives = 114/354 (32%), Gaps = 5/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ ++ K L +L + + E Y P +
Sbjct: 6 IVAKHVTKTTAMAMLGATAILSVLQILFTYLGELGSLKE--GYGAWDALRYVLWGAPQYL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P L+ +++ L SEL++ R++G+S+W+++ + +++L + + + +
Sbjct: 64 YEILPIAALIGSVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALILVVLSFALSEWV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + W + + + +N DF +
Sbjct: 124 IPYTNEQAKGVKS--HRTAAELGEVRGYWTREGQRFIYVDYANSQGQLKNVQVVDFDNNA 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + + + + + T L + ++ +
Sbjct: 182 RLKGVLNAEQGQFVQDGRWILENTAQVDLLPTGNATAQKAAETPLALALQPKYVHMVTID 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +++ MS+ ++ + + F+ + P L+A+ LIA S R
Sbjct: 242 PEDLSPSQLVSFMSYMHEYSQVPKT-YQLAFWQKVASPFALIALVLIACSFIFGPLRQQS 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +F+G + + + P +P++L +L +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFLGYASLVYSPSPAWFVFVPILLMFVAGGYLLQR 354
>gi|255009350|ref|ZP_05281476.1| hypothetical protein Bfra3_09423 [Bacteroides fragilis 3_1_12]
gi|313147107|ref|ZP_07809300.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135874|gb|EFR53234.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 365
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 8 KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 68 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++ I + I N D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D + +K + + I + + IP++ F
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIIRGDKLDSIIPMEPADFMIMR 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + I + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPQLSAYIDKQRQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F T+ +F +G + PV A IP +L ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTVASTFAVNGNMPPVIAMWIPNLLYALIAFYL 359
>gi|317493504|ref|ZP_07951925.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918447|gb|EFV39785.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 359
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY + + L +L + + Y ++ V+ +P
Sbjct: 1 MKIFSRYLIRNIFIGFAAAAGLLIPLFTTFNLMNELDDVS-PGGYHWTQAVVVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + PFI L+ IV L+++ EL R G SI+++ + ++L + +
Sbjct: 60 SLIDLGPFIALLGGIVGLGQLSKSMELTAIRTTGFSIFRISIVALCAGLMLTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA+ E+ + + + S + + + +
Sbjct: 120 WIASPLEQRALQMKNAAIALDESNDSVGNILWARQGNEFVTVKSLSEDNQPVGVEIFYYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ I +K L + + K S ++ +
Sbjct: 180 PDRSLESYIYAQKATILDGNIWMLSGINEKRWVSGKETVETKESLQWKSIFTGMTLKELT 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ S ++ + +++ ++ + + + ++ +AM L+A + RS
Sbjct: 240 MPSSTFSIKQLNQYITYLQNTDQPSI-EFKIALWQKLGRAILTLAMILLAIPFTFSVPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G Y I+ + G L L P ++++++++
Sbjct: 299 PGLGSRLAIGVIVGLFTYISYQIVVNVGLLFSLNAAIVTLTPPAFILAIALVLVY 353
>gi|307566072|ref|ZP_07628530.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
gi|307345260|gb|EFN90639.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
Length = 427
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 4/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L Y K ++ T L+ +L + + V D NE ++ + + A +P
Sbjct: 68 GRLDWYIIKKFIGTYLFAILLIISISIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 127
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ I++ T + +
Sbjct: 128 SNLFSPLFVFIAVIFFTSKLASNSEIIAMLAAGVSFKRLMRPYMISCIVISALTFYLNSF 187
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + +++N ++ + N I
Sbjct: 188 VIPHGTVIRQNFESLYRNNKKNTSAENVQLKVAKNTVAYIQYFDDHYKRGYGFSLAKFEN 247
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQK 239
+ D K+ Q + + + ++
Sbjct: 248 KKLVSHMTAMEIQYDTVADTKYHWKVSNYKIRQLKGLKEHITTGDEKDTILLMEPTDLVY 307
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + E++ +S N + + + E +F+ I + +T+I S+S
Sbjct: 308 SKGQQETFTSPELLNYISKQNSRGLSNVVQYEVEFHKRIAMSFSAFILTIIGLSLSAR-K 366
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F + T+ +F P+ AA IP + + ++
Sbjct: 367 RKGGMGLYLGIGLGLSFSYILLQTVSATFAIKANTPPILAAWIPNFIFVFIAYF 420
>gi|257454351|ref|ZP_05619614.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
gi|257448254|gb|EEV23234.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
Length = 357
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 123/356 (34%), Gaps = 8/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L ++G +L V D + + +Y+ A P +
Sbjct: 2 ILSRYVKKQALFAMTGAIIGLWLLKVVFDYLAELQDLND--HYNYLDALRFIAYSAPRDL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+PF TL+ +V L TSEL + +A GIS ++++ + +I+ I +L+ +
Sbjct: 60 LDYMPFGTLLGAVVGLGLLANTSELTVIQAAGISRFKIVGWVMQPAIIFVIIRLLLGQYV 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + + + +D I
Sbjct: 120 VPTSNQLAHQVKHDKPLLSSAINGYWDKQANRIINIDHANTKGELKNIKVWQLDDNAHIQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQK 239
+ + A + L+++ + + + TL +PI+
Sbjct: 180 QVLQADTGSFVSQNTADKTSGWQ-LQQIKQLTIAADGHSQLTTIPTMTLQLPIEPSAIYL 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S E+ + + + E F+ ++ P ++++ L+A S
Sbjct: 239 LTRSPDNMSVTELWQH-QQLLAKDKRRSLEHEVAFWKKLLAPFAMLSLVLVACSFVFGSL 297
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ + + G + + ++ S P L+P+I + +L + ++
Sbjct: 298 RNQSLGYRIVIALLFGLVFSYLQDLVGFVSLSTGFSPFFMVLLPIIASAALGVYLI 353
>gi|39997020|ref|NP_952971.1| hypothetical protein GSU1922 [Geobacter sulfurreducens PCA]
gi|39983908|gb|AAR35298.1| membrane protein, putative [Geobacter sulfurreducens PCA]
Length = 399
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/352 (14%), Positives = 109/352 (30%), Gaps = 12/352 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L+RY L ++ + L ++ + L +P
Sbjct: 12 MSRLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFAR-GVPFLDVTRLILYMLP 70
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ L+ SE+ +A G+SI + P + ++ T V
Sbjct: 71 SFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVS 130
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-------QQDIFIGAKKILPEN 173
G + + + IL +
Sbjct: 131 VYALPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHD 190
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D S ++ + + + + + + + G ++ S L+I ++
Sbjct: 191 ERNPDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGIGT-GGYRLVEFTSYDLSIALQ 249
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ QK + E++ +M + + + +P V +IA
Sbjct: 250 REQ-QKARLNEEDMTLGELLARMKSPGEQ-PKLVREMHFELHKRFALPFACVVFAVIAVP 307
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ ++ RS + A GI + Y +++ K+ + GI A IP +
Sbjct: 308 LGIQNQRSGRAG-GFAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWIPNV 358
>gi|295675784|ref|YP_003604308.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
gi|295435627|gb|ADG14797.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
Length = 382
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/378 (16%), Positives = 117/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ + L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ------DIFIGAKKILPENHI 175
+ +++ + + + W++ + ++ F+ ++ P+ I
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R L V + Q Y
Sbjct: 180 SNVRIYEFDSKFRLSNIRIAQSGRYQPPGHWLLTGVTDTQLLDVARAPGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 ANQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 VLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLIYLVLGLVGL 376
>gi|152978627|ref|YP_001344256.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
gi|150840350|gb|ABR74321.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
Length = 368
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/351 (16%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + LK+ L +++ F L + N L +P +
Sbjct: 2 ILTRYLTREVLKSQAAVLFILLLIFFSQQLVRVLGSAAN-GNVPADLVFSLLGLGMPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S I +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVLLLSFFTAILAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ K N +M +N +FI K N ++ T
Sbjct: 121 SPWAIQKQTEIVEDAKANPRMAALSAGQFMVSNNNDFVLFINNIKDNQINDVYLFQTRQK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K ++ + +L + N L ++ +
Sbjct: 181 GNAKPSVVTAEKGELKSLPNGDQILSLANSQRFEGSAALPDFRITRFDEYQAYLG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S E ++ N + A+T+ ++ + + L + M LIA +S R +
Sbjct: 236 HQSAGAIENEAEVLDFNTLTQLNTPAAKTELHWRLTLILAVPLMALIAVPMSRVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + + +KS G +G L + I+ + L I++
Sbjct: 296 FAKMLP-ALLLYLIYFLAQSSLKSAGTAGKLDAGIFMPLVNIVFLLLGIVL 345
>gi|265763912|ref|ZP_06092480.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263256520|gb|EEZ27866.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 365
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 8 KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 68 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++ I + I N D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D + +K + + I + + IP++ F
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDFIIPMEPADFMIMR 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + I + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F T+ +F +G + P+ A IP +L ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYL 359
>gi|108761666|ref|YP_631128.1| hypothetical protein MXAN_2917 [Myxococcus xanthus DK 1622]
gi|108465546|gb|ABF90731.1| putative membrane protein [Myxococcus xanthus DK 1622]
Length = 370
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 113/362 (31%), Gaps = 12/362 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L ++ +L+FV+ + + ++ A L A P +
Sbjct: 4 LSRYLLGELLVPLGVWVAFMFLLLFVMQFLRGTDVLLGSS-VTLVDMARLLAYLAPHFLM 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L ELV +A+GI +LL + ++ L + +++ +
Sbjct: 63 MALPIAFLLAILLGLGRLGEDRELVALQALGIGPVRLLAAPMGIAVALSVLMLVITSTAQ 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G L+ + + + + ++
Sbjct: 123 PWGLTGLKVLVSEVIRKNAVGDVKSGVFYEDLSNLTLYAEQVSADGKWTNVLLHDDREAN 182
Query: 185 DKKNKIIHRKDADLAIIYN---------DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ R + + + +Y I D+ ++ + M
Sbjct: 183 SPLLVLAQRGQVGTSTSGEVLRFALEAGEVHRSAGRETEEYSIIRFDQAEISVGVGASMG 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+FS + E+++ + + + L +A L+ ++
Sbjct: 243 KRSRFSYSREELTPGELMEAAREAEAQGE-DARMYRMALHSRLGNALAPIAFALLGTPLA 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + + + Y + + + G+ G L A + ++ +++ ++ L
Sbjct: 302 MG-RRQSGRAWGYLLTLGGYVLYYLLSRVFEQMGQKGQLPAGLAGQMANLVFVAVGLVAL 360
Query: 356 LQ 357
+
Sbjct: 361 YR 362
>gi|298506037|gb|ADI84760.1| membrane protein, YjgP-related [Geobacter sulfurreducens KN400]
Length = 388
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/352 (14%), Positives = 109/352 (30%), Gaps = 12/352 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L+RY L ++ + L ++ + L +P
Sbjct: 1 MSRLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFAR-GVPFLDVTRLILYMLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ L+ SE+ +A G+SI + P + ++ T V
Sbjct: 60 SFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-------QQDIFIGAKKILPEN 173
G + + + IL +
Sbjct: 120 VYALPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHD 179
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D S ++ + + + + + + + G ++ S L+I ++
Sbjct: 180 ERNPDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGIGT-GGYRLVEFTSYDLSIALQ 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ QK + E++ +M + + + +P V +IA
Sbjct: 239 REQ-QKARLNEEDMTLGELLARMKSPGEQ-PKLVREMHFELHKRFALPFACVVFAVIAVP 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ ++ RS + A GI + Y +++ K+ + GI A IP +
Sbjct: 297 LGIQNQRSGRAG-GFAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWIPNV 347
>gi|163750106|ref|ZP_02157349.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
gi|161330163|gb|EDQ01145.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
Length = 364
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/352 (12%), Positives = 108/352 (30%), Gaps = 14/352 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ K + L + + + + + S L +P + +IP
Sbjct: 1 MIREVFKAQIAVLAVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLAVLVIP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + SE+VI +G+S W + ++ ++ IFT ++ + E
Sbjct: 60 LSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTGILSVYVTPWAE 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + N + + I + D +
Sbjct: 120 EKQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELYKVFVAQLPDPDDES 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ +++L V+YQ +D Q E+
Sbjct: 180 GISNIVVAQGGKVIEDETGGQRLQLSDGVQYQATPKKVDFQIIEFGSYQMQIKEQPVDER 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S I + M + F++ + IPL + MTLIA ++ R +
Sbjct: 240 RRKLSAMPINELMDIEGPAATAE-------FHWRLAIPLAIPLMTLIAVPMARVNVRQGK 292
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + ++ + + G++ + + IL+L
Sbjct: 293 FAK-MFPAVLLYLGYFCLMIAGRKALEDGVIPEYLGMWWIHASALCMGILLL 343
>gi|53713591|ref|YP_099583.1| hypothetical protein BF2302 [Bacteroides fragilis YCH46]
gi|60681871|ref|YP_212015.1| hypothetical protein BF2391 [Bacteroides fragilis NCTC 9343]
gi|253565580|ref|ZP_04843035.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|52216456|dbj|BAD49049.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60493305|emb|CAH08089.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
gi|251945859|gb|EES86266.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301163363|emb|CBW22913.1| putative membrane protein [Bacteroides fragilis 638R]
Length = 365
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 117/353 (33%), Gaps = 2/353 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 8 KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 68 ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +D ++ I + I N D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ D + +K + + I + + IP++ F
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDSIIPMEPADFMIMR 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + ++ + + I + E +++ I + +T+I S+S ++
Sbjct: 248 NQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLSSRKTKG 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F T+ +F +G + P+ A IP +L ++ +
Sbjct: 308 GMGLHLGIG-LGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYL 359
>gi|330752041|emb|CBL80552.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
Length = 374
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/369 (10%), Positives = 105/369 (28%), Gaps = 25/369 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + ++ + ++ + + V D++E + + +
Sbjct: 4 LDWYILRKFMGSFFLTMILILAIAIVFDISEKIDDFQNGATMN-EIVFDYYINFIAFYGN 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + I + SE+V G S + L P+ +G+ ++ + ++ + + +
Sbjct: 63 LFSALILFISTIWFTSRITSNSEVVAVLTSGTSFNRFLRPYFIGATIICLLSLTLNHLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I +++ + + + + + + +
Sbjct: 123 PHTNIKRIAFEEKYITGVSRPINQKVHRQVLPGHYVYFETYSGQRQSGYQFTYEVFDSHR 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQKF 240
D + +L + + + +
Sbjct: 183 LASK---LSADFVRLDTATGQWRLDNFRLRTLDSLNNEVILTGRRMDTTLAFTSEQIAPK 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A+ + E+ + + + + + + P+ L+A S++ R
Sbjct: 240 LSSIATMNSNELSRFIEQEEVTGNENIASYQMEMQRRTSYPVSSYVFVLLAVSLA-TQKR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----------------LPVAAALIPV 344
I +A G+ + + I ++F +G+L A IP
Sbjct: 299 RGGLGINIAIGLILCAVYVFAMQISQTFAATGLLSIDKGLGSALLWVGIQPAEFAIWIPN 358
Query: 345 ILTISLSIL 353
+L ++I
Sbjct: 359 LLFAGIAIW 367
>gi|150021419|ref|YP_001306773.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
gi|149793940|gb|ABR31388.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
Length = 1096
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 123/355 (34%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + + + + L ++L + + I + L +P
Sbjct: 1 MRVLTKYILKLSIGPFIMGVAAFV-LFASVELLYQLSDIIVRHRVGILKLFELIYYNLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L V L + E+ GI +L+ PF + S+L G+F + +
Sbjct: 60 FVSMGIPVGVLFSIFWVLSQLYSSKEITAMLVHGIPSRKLVYPFFLLSVLFGLFAFYLND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + I ++ + +I Q + + F
Sbjct: 120 QMVPTFNHKAMKTISKYVYKRPEISIRENVLTKIDESQYFFVKRYDQSSGILYDVVLFQH 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I +++ + D + K+ + + + ++ + +L++ ++ +
Sbjct: 180 IQGEERIITAEKVQKDEGKWFLINGKMYVTDKDGFLKFDVNFSKISLDLKDDLESLMRVG 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ K+ K + + + + +T++ +SL F
Sbjct: 240 KSPRDMTGDELKNKIKTFRKLGV-DPSPWIVELHGRYANSVGPFIITILGVPLSLLFGLK 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ ++ + + + GK +L PV AA P ++ IS+ + + L
Sbjct: 299 SKSWSVIFT-FAIVILYQGSGAWISAMGKENLLNPVLAAWFPNLVFISVGLFLFL 352
>gi|67922983|ref|ZP_00516478.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
gi|67855202|gb|EAM50466.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
Length = 394
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 114/357 (31%), Gaps = 16/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY F L L+ + L I + +S + ++P +
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGSLFDLVRRVTESGLMLSVALKVLLLKLPGFV 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + L+ SE++ R++G+SI++L+ P ++ ++ +V + I
Sbjct: 82 SLAFPMAMLLAALMAYTRLSSDSEIIALRSLGVSIYRLIIPVILFGFMVTGCAFIVNDWI 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + +++ + + Q+ +L E++
Sbjct: 142 APAATHEAAVTLERAVNQERPDFKERNIVYPEYKTIQEENGQEATVLSRLFYAEEYNGEQ 201
Query: 184 IDKKNKIIHRKDADL---------AIIYNDKVKLKKVVEYQY-----GRIPIDKNSTTLN 229
+ + ++ I ++ Y R + L
Sbjct: 202 MQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQLA 261
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMT 288
+P + F + E + + S R + + +P + +
Sbjct: 262 LPRAPLDLANRRQNFTEMTIAETKEYLKAMQLSGNEKRIRKVQVRLQEKYALPFVCLIFG 321
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+ A++ + + + F Y + + S G GIL P A +P I
Sbjct: 322 LVGAAIGVRPQ-NTNKSTSFGVCVGLIFGYYLLAFMSTSLGIWGILTPFLGAWLPNI 377
>gi|325983221|ref|YP_004295623.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
gi|325532740|gb|ADZ27461.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
Length = 352
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 122/357 (34%), Gaps = 10/357 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++RY L L + + L DL + + +G Y I+ + +P
Sbjct: 2 IYRYISGQVLIGFLIAIAVILPLFSFFDLLDQLDDVG-RGTYHITDAFLYTTMLLPRRFI 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
QI PF+ L+ + L SEL+ R G+S W++ + ILL + ++ IA
Sbjct: 61 QIAPFVALLGTVTALGKLAVHSELIAMRVAGLSPWRISLAPLSVGILLLLGVAILEQFIA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ I + + ++ W + I
Sbjct: 121 PQLQQKAITYRAIALEQSAELGRNLGIWTRNEKNILRIGQIISNNKAAAIEILQLDEEGF 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFS 241
+ + + I+ N+ +L V+ + I + + + + +
Sbjct: 181 LAAHVLAQTAE----IVDNETWELSNVIVRTFANNQITVAHHTTLHWSSFVSPEDIATLT 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S E+ + + F + + + I LM +AM L++ RS
Sbjct: 237 KPPESLSPLELFRHVEFLRSTGQEADS-YALALWRKIGSALMTIAMLLLSIPFVFGSIRS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+V + G +Y + I+ + G L P AL P I ++ + L +
Sbjct: 296 GLSNKLVFASL-IGIAVYLLDQIIANAGLILQLNPALIALAPGFTIIMVANVWLNRT 351
>gi|91215236|ref|ZP_01252208.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
700755]
gi|91186841|gb|EAS73212.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
700755]
Length = 337
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 113/336 (33%), Gaps = 3/336 (0%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+ + +++L+E + + E I V + P + I L
Sbjct: 1 MFIPIGIIVNLSEKIDDIKE-NEVPIEEVLVFYGNFTIYFANLLFPIFLFLSIIWFTSKL 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+E++ + GIS + L P+++G+ L+ ++ + + + + Q+ G
Sbjct: 60 ANNTEIIAILSSGISFSRFLRPYLIGATLVCGIALMFTMYLVPNASQGFNEFKYQYFKKG 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII 201
+ + + Q+++ + + + + KI R +
Sbjct: 120 KQSQETQNVYRQVNDNEFIFATNFQTSTGTARNFTLEHFEGQEMTFKISASRLKFNAKDS 179
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
+K + + ++S +P + + + E+ ++ +
Sbjct: 180 TYTLNNFEKRTINEREDVIERQSSLDTILPFEFGELTPVEYIAETLDYGELKDFITTEKR 239
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
+ + Y +P+ +T+IA SVS R +A GI F +
Sbjct: 240 RGSANISSYQIVAYKRWSVPVSAFILTIIAVSVSA-MKRRGGMGANLAIGIVIAFAFIFL 298
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + P+ A IL L+I +L++
Sbjct: 299 DKVFGTIAEKSTFSPLIAVWFSNILFGLLAIYLLIK 334
>gi|254507443|ref|ZP_05119578.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
gi|219549699|gb|EED26689.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
Length = 366
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/353 (11%), Positives = 116/353 (32%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L +++ ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLLLVFVSQTFIKVLGDATD-GDIPARLILAIVGLNIPQMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + + + + +
Sbjct: 61 LLMLPMSLYIGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTVLAAFNTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ LI+Q + + + +FI + N+++
Sbjct: 121 APWSQEKEAQLIEQVAAENSVDLLKAGQFQRTPDGSSVVFIDEIRDNKLNNVFVAQVRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ ++ + + + Y+ +D T + G ++
Sbjct: 181 DAILPSVMFSNSGEVREHDDGRQMIVMHDGTRYEGIPTRLDYMVTEFEHYSGLIGQREVQ 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + + ++ S + + + I + + + +T++ +S R
Sbjct: 241 AKRRSWGAVPTLDLIESTDLSA-------KAELQWRISLFVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + F+ + ++ KS + G + V + +I +
Sbjct: 294 GRFAK-MGPAILAYFVYFISMSTTKSAIEDGNIPAVIGMWPINFALLVAAIGV 345
>gi|330938933|gb|EGH42432.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
Length = 302
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 107/311 (34%), Gaps = 12/311 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSMFAFIDEMRDISDT--YTLTDALSFVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL I VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
D + ++ A A D +LK V + + +T ++ +
Sbjct: 173 RYHFDDQRHMLTSSFAKEANFKTDYWELKDVTTTHFNDGSTEVVNTPVERWDVALSPQLL 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 233 STVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIV 308
RS V
Sbjct: 292 PLRSVTLGQRV 302
>gi|294053783|ref|YP_003547441.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
gi|293613116|gb|ADE53271.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
Length = 372
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/372 (13%), Positives = 119/372 (31%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K ++ + L + ++ + ++ + + N + +P
Sbjct: 1 MSLLDRYVLKEWVVAFVLTLGVVVGVLVLQNMYDSLPDLLS-SNATGPEILFYYMLSLPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P LV + L+R +E++ RA G S++++ V L +
Sbjct: 60 YLPTVLPITFLVSLLFSLGTLHRNNEVIAMRATGASLFRISRSLWVAGFALSGLLFYLTA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD---------IIPWMQISNPQQDIFIGAKKILPE 172
+ + I ++K D + F+
Sbjct: 120 EVVPMTVERARTFIDNLSYTAKEKKQDVDAREVGLLHNLGFDNRKEGRLWFMNRFSERAW 179
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-------KNS 225
I + + T D + + + E Q D +
Sbjct: 180 LAIGVNVHTRTADGIEVLRVSAEEGFYDEVKGYWVFLRGRELQIDPDTGDEIRLLSFEEK 239
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
D ++ S E+ + + + T+++ L+ P +
Sbjct: 240 AYPEYTEDPDLMLAMHKKPNELSLLELREIIETVPAEENPAVHAYTTRYFSLLAAPFSCL 299
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ IA ++ R+N I ++ + + Y +ITI G+ ++ P AA +P
Sbjct: 300 VLVGIAVPFAVSGVRANPM-IGISKCMGYFAVFYVLITISSILGERHMIAPWLAAWLPNF 358
Query: 346 LTISLSILILLQ 357
+ +S+ + L+
Sbjct: 359 AMLVVSMWLYLR 370
>gi|310778171|ref|YP_003966504.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
gi|309747494|gb|ADO82156.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
Length = 357
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 118/363 (32%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K ++ + + F+ID+ + + S+ + + +P
Sbjct: 1 MKIIHRYILKEMRMPIIFGISLFTFI-FLIDIMVQMMENIIVKGVSLLDVVRILSFYLPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ + L TSE ++G+S+ ++ P + ++ + F +
Sbjct: 60 ILSQTIPMGFFLGVMITYSKLTSTSESTAMNSMGMSLNSIIKPTFMLALGITAFVFFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + L + + ++ + +I
Sbjct: 120 SIIPNSFVKLQQLTLKIAYEKPAFQLKENMYIDEVDDYSIYIDKVGGDGSAENIL----I 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQK 239
+K N A A+ + + L+ Y +K + F+
Sbjct: 176 FKKEKDNSFPTVLTAKKAMWKDAAMILEDAEFYNLNPDGSEKLRGEFSRQKIPINSFFEN 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + + + S + + + IPL + + ++ S+
Sbjct: 236 VKMKVSEIETMSVRQLLKESKDKDDEEKLPYIVEMNKKLAIPLSAIMLGILGVLFSVGHH 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI-LLQK 358
RS + + + F+ + + G + P P + + L+I + LL+K
Sbjct: 296 RSGK-GVSYGISLGVIFLYIASLNVGVVMANRGKISPFIGIWTPNFVLLGLTIYMYLLKK 354
Query: 359 EDG 361
G
Sbjct: 355 RRG 357
>gi|209519257|ref|ZP_03268059.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
gi|209500337|gb|EEA00391.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
Length = 382
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 113/378 (29%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ + L + I L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGIPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ--------------------- 160
+ +++ + + + W++ + ++
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSTNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATI 179
Query: 161 ---DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K N + D L + + Y
Sbjct: 180 SNVRIYEFDSKFRLSNVRIAQSGRYQPPGHWLLTGVTDTQLLDVAPAPGTPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + N R E +
Sbjct: 240 ATQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPGLVYLVLGLVGL 376
>gi|253583477|ref|ZP_04860675.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251834049|gb|EES62612.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 358
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 121/365 (33%), Gaps = 13/365 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + L+ + + + + + + SI + + +P
Sbjct: 1 MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVK-GISIIDIMRILSFYLPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F RTSE +IG+ + +++ P + + + +F +
Sbjct: 60 ILSQTIPMGIFLGVMLTFSKFTRTSESTAMSSIGMDLREIVKPIFILACITTLFIFFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + + +I ++ I +
Sbjct: 120 SIIPRSFTKLQYITTKIAYENPVFQLKEKTFIDEVDE---YNLYIDRIEGKDRIAQGVLI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
D+ + A + + + Y + + + + + + DG
Sbjct: 177 FQKDEDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLTAYFDG 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S ++K+M K+ + + + +PL + ++L+ +S+
Sbjct: 237 IDIKVKDIEAMSISMLMKEMKELPKNEKIP---YKVEINRKLALPLSTIMLSLLGVFISI 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + A + F T + I G + P P I+ ++
Sbjct: 294 GHHRSGK-GANFALSLAVIFSYITFLNIGMVMANRGKVPPFIGVWTPNIILFLVTFYFYK 352
Query: 357 QKEDG 361
+K G
Sbjct: 353 KKSRG 357
>gi|237799874|ref|ZP_04588335.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022729|gb|EGI02786.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 353
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 113/330 (34%), Gaps = 14/330 (4%)
Query: 1 MPGILWRYFFKY-YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M L RY K +L L + LV + + + + Y+++
Sbjct: 1 MVK-LDRYIGKSVFLAILA-VLGIILGLVSLFAFIDEMGDINDT--YTLADALSYVFMTA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +P L+ ++ +L +SEL I RA G+SI +++ + + L + VLV
Sbjct: 57 PRRVYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLFLMVAGVLV 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A E + +GD Q + W + + I + N +
Sbjct: 117 GEYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDG 236
T D + ++ A A D +LK V + I+ ++ +
Sbjct: 172 TRYRFDDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFNEGSTQVINTPEERWDVSLSPQL 231
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S S + + N R F+ ++ P + VA+ L+A S
Sbjct: 232 LSTVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 291 GPLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|269103492|ref|ZP_06156189.1| putative permease [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163390|gb|EEZ41886.1| putative permease [Photobacterium damselae subsp. damselae CIP
102761]
Length = 366
Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/352 (11%), Positives = 111/352 (31%), Gaps = 7/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQFAVLFVLFLVFISQKFIRILADATD-GSIPSDLITTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKFLLRAALSLALITGALATFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K + + N Q +F+ + +
Sbjct: 121 SPWAAEKEAQVMESVKADSGLDLLVKGQFQAAPNGQGVVFVNDITDKGKTLKHVFVAQLK 180
Query: 184 IDKKNKIIH-RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D + D ++ + + + ++ +
Sbjct: 181 GKDSIRPSVLVADHGYVSEHKDGRQILDLKDGTRYEGIPTRLDYSITDFEGYQAVIGQRK 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
R ++ + + ++ A+ +F + + + L + +T++ +S R
Sbjct: 241 VKEERRDWDAMPTLELMQRA----EPEAQAEFQWRMSLILCIPLLTMVVVPLSAVNPRQG 296
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +V + + I+ KS + G L P+ ++ + + + +
Sbjct: 297 RFAKLVP-AVLIYLAYFLAISAGKSALEDGTLPPMIGLWSINLVILLIGVAL 347
>gi|163788640|ref|ZP_02183085.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
ALC-1]
gi|159875877|gb|EDP69936.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
ALC-1]
Length = 340
Score = 107 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/337 (15%), Positives = 119/337 (35%), Gaps = 3/337 (0%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + +DL E ++ E + P + I
Sbjct: 1 MLLLFIPIGITVDLAEKVGKILENK-APFGEVTAYYVDFTIYFANLLFPLFLFLSVIWFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+++G+ ++ IF +++ ++ K + ++
Sbjct: 60 SKLANNTEIVAFLSSGVSFTRFLRPYLIGATVVAIFALVLGMYLSPMASKGFNEFKFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
+ + + QI++ + + K KI +
Sbjct: 120 KKNKQVQQTRDVYQQINDNDYIFVSSFSPKSKTGMKFTYEHIEGNELKYKIFAENIRYIE 179
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
++ ++ G I+K S ++ P +++ ++S+ E++ ++
Sbjct: 180 KDSTYRLTTYVKRSFENGVERIEKERSKDMHFPFELEDLTPVQYAAETKSYGELLDFIAA 239
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ + R E +P+ + +T+IA +VS R + +A+GI +
Sbjct: 240 EKRRGSPNIGRYEVVKQKKWSLPVSIFILTIIAVAVS-SVKRRGGMGVNLAFGIAIAMIY 298
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + V A +P L L+I +L
Sbjct: 299 VFLDKIFGVMAEQANFPAVIAVWLPNFLFGILAIYLL 335
>gi|192359904|ref|YP_001981938.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
japonicus Ueda107]
gi|190686069|gb|ACE83747.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
japonicus Ueda107]
Length = 366
Score = 107 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 128/352 (36%), Gaps = 5/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T+L + ++ + + ++ + A R+ ++
Sbjct: 2 IIFRYLSRDLLLTSLAVSAVLFTIFLTGKFSDYLDDAAQ-GKLAVDVLFTIIAYRMTGLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+V+ A GIS QL+ +V S L+ L +
Sbjct: 61 ELILPLGFYLAILLAYGRMYMDSEMVVLSACGISPGQLVGMTLVPSALIAAIVALFSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G ++ + + ++ + + + + Q + + L +++ +
Sbjct: 121 SPLGAQLTEQTLAEQRNRSEFESMQPGRF---QSLGQGKIMAYVESLSDDNRLLQHVFVA 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ A+ ++ + G K T + + + ++
Sbjct: 178 HQEGPDSSAIVVAETGTQMYRPDYGQRYLVLNQGYRYQGKPGTNEFTITRFEDWGRYLPP 237
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + E+ + + + + + I +P+M++ TL+A +S R +
Sbjct: 238 TTSVAEIELKSDAKTTAQLFRAEDNESIATLQWRISMPIMVLIATLLAVPLSKTNPRQGR 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + I T + +S G L P + + + +++L++
Sbjct: 298 Y-LKMLPAILVYVFYLTFLINARSAITKGNLNPALGMWVVHLPFLVIALLMI 348
>gi|301628860|ref|XP_002943564.1| PREDICTED: lipopolysaccharide export system permease protein
lptG-like [Xenopus (Silurana) tropicalis]
Length = 350
Score = 107 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 105/351 (29%), Gaps = 26/351 (7%)
Query: 33 LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
+ + + Y +S + R+P + +++P L+ I V L ++SE I
Sbjct: 1 MIDELRWVSRAPGGYQLSHALLTVVLRLPNYLYELLPISVLIGTIYVMARLAQSSEFTIM 60
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ------------WK 139
R G+ + L +V T + + +A + G L + W
Sbjct: 61 RTSGMGPGRALRMLLVLGCAFVALTFAMGDYVAPMANRAGQMLKVRYLGQLTTGATGGWL 120
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
+ ++ P + + + +
Sbjct: 121 KERKDDGHSLAVNVRALGPDGQMIGIRIFDFDDQGRLSAQLQAASAQVAQTAQTAQTAED 180
Query: 200 IIYNDKVKLKKVVEYQY--------GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
L + + ++ D S I + + E
Sbjct: 181 AADAPGWVLTQAQQRRFVLRGADQAHVEQTDSASMRWPTGITAEMVSAALLKPERMPTIE 240
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ + +S + + E +F+ + PL + M ++A + RS V G
Sbjct: 241 LFQYISHLEANGQ-SAQKYEIEFWRKVFYPLSCLVMVVLALPFAYLHFRSGGLAAYVFGG 299
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI----LILLQK 358
+ +G + + T+ G P A P ++ + S+ ++L++
Sbjct: 300 VMAGISFFLLNTVSGYAGTLQNWSPWLTAAAPGLIYSAASLAAFGWLVLRR 350
>gi|71279918|ref|YP_267491.1| putative permease [Colwellia psychrerythraea 34H]
gi|71145658|gb|AAZ26131.1| putative permease [Colwellia psychrerythraea 34H]
Length = 388
Score = 107 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 117/361 (32%), Gaps = 10/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K KT L M + + E + A ++P +
Sbjct: 2 IIFRYLLKEVAKTQLAVFFVLMTIFISQKFVRVLGDASE-GSIPGQLVMTFIALKIPDLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + + SE+ + A G+S W ++ +V +++ IFT + +
Sbjct: 61 GFILPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-------HIW 176
A + + ++ + + Q N +FI K + +
Sbjct: 121 APLASEYQYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDKDRETNSFNKVFVAQLP 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + +++ K + +L +Y R K ++
Sbjct: 181 KGDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYYIQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + R I + N + I PL + + IA +S+
Sbjct: 241 IKDQEVEHQHRKLSAIST-LELYNNMPPELESAYRATIQWRIAFPLACIILIFIAVPLSV 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++ + L + ++ + + + V I + + +++L+
Sbjct: 300 VNPRQGKFAKMLPALMLFLGYLLLLTSMRSAI-EKNAIPSVVGLWPIHISALFIGMMLLM 358
Query: 357 Q 357
+
Sbjct: 359 K 359
>gi|308050966|ref|YP_003914532.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
gi|307633156|gb|ADN77458.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
Length = 372
Score = 107 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 124/356 (34%), Gaps = 13/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L+ + L + + I E + A L A +P ++
Sbjct: 2 IIFRYLLKEALRAQIAVLAVLVTIFISQQFVRILADAAE-GQFPGKLVATLLALNMPELL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + SE+ + A+G+S W + +V + ++ + + + +
Sbjct: 61 SLILPLSLFLGVMMAHGRMYADSEMTVLHAVGVSEWYVTRVTLVLAFIMALISGITAIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI----WEDF 179
A ++ ++++ + + + +N + I++ + + +
Sbjct: 121 APWAKETEYQVLEKAESEAGLAALVQGRFQRAANGKAVIYVEGLSKGKLDTVFVAQLPEK 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + + +++L + + N Q+
Sbjct: 181 DDPEGETALVLAEGGRIVEGSDGSQRLQLLDGNRFSGVLNQKEYNLVQFGEYEMEIKSQE 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S Y + + + A + ++ + +P+ L +TLIA +S
Sbjct: 241 AAHKRRKLSAYSMSQLFEEG-------SPHAWAEIHWRLAVPIALPLLTLIAVPMSRVNV 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ I + ++ + ++G + P + + + I+++
Sbjct: 294 RQGKFAKMLP-AILIYLGYFGLLMAGRKAIENGAIPPQLGLWWIHLAALVIGIVLI 348
>gi|186476978|ref|YP_001858448.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
gi|184193437|gb|ACC71402.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
Length = 382
Score = 107 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 115/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRIYEKYFARQVYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + + + + W++ Q F+ ++ P+ I
Sbjct: 120 VVGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGQLQPDATI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------------- 222
K R L V + Q + D
Sbjct: 180 SNVRIYEFDSKFRLSNVRIAKSGKYQPPGHWLLTDVTDTQLIDVAQDASKPADALNPVYR 239
Query: 223 -----KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+L + S + + + + N R E +
Sbjct: 240 AKQAALPEYSLRSELTPQILSVLLVAPERMSMFNLFRYIQHL-TENHQDTQRYEIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGNLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 359 LTAATPALIYLVLGLVGL 376
>gi|218710648|ref|YP_002418269.1| hypothetical protein VS_2728 [Vibrio splendidus LGP32]
gi|218323667|emb|CAV19979.1| hypothetical permease [Vibrio splendidus LGP32]
Length = 368
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/355 (10%), Positives = 112/355 (31%), Gaps = 11/355 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ RY + +K+ ++ + + + S + +P
Sbjct: 1 MSVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLVLSIVGLNMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P + ++ F L SE+V+ A GI L+ + +++
Sbjct: 60 AMGLLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + + ++ + + + +FI ++++
Sbjct: 120 FWLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQM 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ K D+ + + + + ++ +D T + G +
Sbjct: 180 RPRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQR 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ I + + RA+ + + + + L + +T++ +S
Sbjct: 240 EVEKKGREWEAIPTIDLIGNQD-------NRAKAELQWRMSLVLCIPLLTMLVVPLSAVN 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + I + I+ KS + G + L + ++I
Sbjct: 293 PRQGRFAK-IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIG 346
>gi|258593793|emb|CBE70134.1| putative Permease YjgP/YjgQ family protein precursor [NC10
bacterium 'Dutch sediment']
Length = 356
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/359 (13%), Positives = 115/359 (32%), Gaps = 8/359 (2%)
Query: 1 MPGIL-WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP +L RY + K + F G ++L N++ + L R
Sbjct: 1 MPMLLLDRYLTREIAKPLVIFCGGLLLLFANFTAVRYLNRVAD-GIMPFQSVLPLVLVRA 59
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ ++ ++P + +V L SE+ + G+S +++ VGS+++ +
Sbjct: 60 AVALELLLPIALHLSVVVTLGRLYTDSEMTALFSSGVSPSRIMRIVCVGSLIVAGIVAFL 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + L ++ + D + + S+ F +
Sbjct: 120 SIYVRPWANENRYRLEREAAADVDLNDMQPGHFYENSSGTVLFFQRRAQSSGRMREVFIQ 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + A+ L +I D
Sbjct: 180 SRSEDRIRLIWADEAHYPEAVEAGAGRTLV----CSGAQIYELSRDRGAVRQATSDELVL 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ + S E +K + + + + + +F + + P+ + M L+ +S +
Sbjct: 236 EWEKARTLSE-EYKRKAAPTWQLARSASPKDIAEFQWRLSTPVAALLMGLLGFPLSRARA 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + S Y + + + + + G++ V +L L +L ++
Sbjct: 295 RQGKYAK-LFVSVVSYATFYNLNMMARHWVEKGVVSTVPGIWWVHLLLAILVASLLWRR 352
>gi|239809483|gb|ACS26209.1| unknown [uncultured bacterium]
Length = 291
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 110/295 (37%), Gaps = 9/295 (3%)
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P L+ ++ L +SEL I RA G+S+ +++ + ++L I +L+ +A
Sbjct: 1 MLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVVAVMKPMLVLLIAGILIGEYVAP 60
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ E I + G+ Q S W + N + + + T D
Sbjct: 61 ATEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHV-----NAVQPGGMLVGVTRYRFD 115
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSE 242
+ +++ A A D L+ + + + ++ +
Sbjct: 116 DERRLLSSSFARRASYQADHWLLENISTTHFRGDHTEVVRTPQERWDVQLTPQLLGTVVM 175
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + S + + + + + +N R F+ ++ P + VA+ L+A S RS
Sbjct: 176 EPEALSITGLWRYIHYLGEQG-LNNGRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSV 234
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 235 TLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPAGICALIGAWLLRR 289
>gi|167561902|ref|ZP_02354818.1| hypothetical protein BoklE_05005 [Burkholderia oklahomensis EO147]
gi|167569154|ref|ZP_02362028.1| hypothetical protein BoklC_04865 [Burkholderia oklahomensis C6786]
Length = 382
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/378 (15%), Positives = 120/378 (31%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRVYEKYFARQIYVTFVFVLFAFSGLFFFFDLIGELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ +I VF + SE I R G++ Q L + + + I T L+
Sbjct: 60 RFYEIIPVAALISSIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ ++ P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGQLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKRGRYQPPGHWLLTDVTDTQLTNVSGAGGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + + N R + +
Sbjct: 240 ARQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 LTAALPGCIYLALGLFAL 376
>gi|94266927|ref|ZP_01290580.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93452379|gb|EAT02998.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 400
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/348 (13%), Positives = 111/348 (31%), Gaps = 4/348 (1%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + + A P ++ +P
Sbjct: 15 EMLAPFFAALLVINAVLFLGRLVPMLDEIFSL-GVGLGDFLRVVAYITPSMLLFSLPMAA 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++ I+ F L E++ +A GIS+ ++L P V +L G+ T+ + G
Sbjct: 74 MMAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAM 133
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQI--SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ ++ + + I + D
Sbjct: 134 DQLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTIS 193
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
+ L ++ S
Sbjct: 194 AQGGNLRADPAAGRVVLSLSDGSLHRSAGAKSQTIFFKHYKLEIPLDSPTLGPPGRSSMT 253
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+++ + YR +++ + +P+ + ++ S+S + + ++ + V
Sbjct: 254 QAQLRQRATELGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLS-QMGQGSRLALGVP 312
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
G+ S Y ++T KS G++G L A +P +L + +L +
Sbjct: 313 LGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLWR 360
>gi|46580073|ref|YP_010881.1| permease [Desulfovibrio vulgaris str. Hildenborough]
gi|120602469|ref|YP_966869.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|46449489|gb|AAS96140.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
gi|120562698|gb|ABM28442.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|311233928|gb|ADP86782.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
Length = 360
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY F+ L+ L L L + DL + + + E + + PLII
Sbjct: 3 LLFRYLFRNNLQVILPTLAVGTGLYLLSDLFDRLDDILE-AGVPGNVAIWYFVAKTPLII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L+ ++ ++R EL+ +A G+S + FVV +L + + +
Sbjct: 62 SQILPAVFLLAALIQLCLMSRDRELMALQAGGVSFGAIARFFVVYGLLWAVLQLGFSQVL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+GE+ + Q+ D W N + + + +
Sbjct: 122 GVAGERESARIWQEQVRGRTPGTRDLTNVWFTDDNHVIHLEVVTPALRKGQGFAAYGLAA 181
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ +I K ++ +G + + S + +
Sbjct: 182 DGIHIDTVIRAKAFTGTAGTWKLQDVEVFSTRDFGHAKLPEMSIAIGQDPQDFAVIDPGA 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+++ + + + T ++ + LV M L+A ++ + +
Sbjct: 242 DPQRLPLWQLGDAVEKLRTAGS-NVEGLRTAWHMKLAYAASLVVMGLLAVAMV---TWRD 297
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F+ YT+ TI + G+ GI+ P AA IL ++ LL
Sbjct: 298 NIYLATGLALVFTFLFYTMFTIGSTLGQKGIVSPPIAAWGADILVGVVASARLL 351
>gi|123966805|ref|YP_001011886.1| putative permease [Prochlorococcus marinus str. MIT 9515]
gi|123201171|gb|ABM72779.1| possible permease [Prochlorococcus marinus str. MIT 9515]
Length = 386
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/373 (11%), Positives = 121/373 (32%), Gaps = 19/373 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ ++ + + + I+ + + + I + +P +
Sbjct: 10 LIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFL 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + NL+ SE++ +++G++ ++++ P ++ ++ + T + +
Sbjct: 70 VIAFPMSVLLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNL 129
Query: 124 ATSGEKIGIDLIQQWKDNGDK--------------QKSDIIPWMQISNPQQDIFIGAKKI 169
++ DL+Q + D I I +
Sbjct: 130 VPISNRLAADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNTNKPIDGASHLTHIFYARR 189
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNS 225
+ +++ K KI+ + + + I ++
Sbjct: 190 FLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEGSVSTIIFDT 249
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
+ + + + + K S R + + Y + +P+
Sbjct: 250 YIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMSC 309
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +++ ++ + + I F+ Y + S G GIL P AA IPV
Sbjct: 310 IVFALIGSTLGIKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAWIPV 369
Query: 345 ILTISLSILILLQ 357
++ + +L +
Sbjct: 370 LMFLGFGTFLLWR 382
>gi|330818020|ref|YP_004361725.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
gi|327370413|gb|AEA61769.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
Length = 382
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/378 (15%), Positives = 117/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G +Y+ + + P
Sbjct: 1 MRLYEKYFARQIYLTFVFVLFAFSGLFFFFDLISELNSVGH-GSYNFGYAVLRVGLQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP TL+ I VF + SE I R G++ + L + + L I T L+
Sbjct: 60 RFYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
I +++ + + + W++ +
Sbjct: 120 FIGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K +N + D L+ I K + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLSPIVPAPNTPKDALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + + N R + +
Sbjct: 240 SEQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A +P ++ ++L + L
Sbjct: 359 LTAALPGLIYLALGLFGL 376
>gi|90416560|ref|ZP_01224491.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
HTCC2207]
gi|90331759|gb|EAS46987.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
HTCC2207]
Length = 370
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 127/354 (35%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T + ++++ + + + + + R+P +
Sbjct: 2 IIFRYLCREILSATTAVCVILLLVLMSGRFVKYLGKAV-AGDMDSNSIFAMIGYRIPSFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P + ++ F L +E+ + +A G+S +L+ ++ + + + T + +
Sbjct: 61 ELTLPLAFFLAVLLSFGRLYVQNEMSVLKACGVSERRLMGYTLIIASVFALATGWLSLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ SG L K + K + +S + A+ + + + E F ++T
Sbjct: 121 SPSGMTKAEALFDAEKSRSELDKLMPKKFYSLSGGKGVT--YAEAVTEDRELDEIFLAMT 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK--FS 241
R LA + Y ++ F++
Sbjct: 179 AGSDENSDRRLILVLADKGRQQQAENSSERYLVMESGYRIEGVPGQNDYQITRFEEYGSR 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ ++ S + + ++ + + + IPLM++ +T++A +S +R
Sbjct: 239 LEDSAPSIRKTKTDAMATGLLLGSNDPELQATLQWRLSIPLMVLVVTILAVPLSRTNNRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + I F + M+ +SG + L + + +++L+L
Sbjct: 299 GRYGK-LLPAIALYFTYLVALNAMRGALESGAIPISVTLLPVHAVYLGIAVLLL 351
>gi|94263395|ref|ZP_01287209.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93456231|gb|EAT06365.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 400
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/348 (13%), Positives = 111/348 (31%), Gaps = 4/348 (1%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + + A P ++ +P
Sbjct: 15 EMLAPFFAALLVINAVLFLGRLVPMLDEIFSL-GVGLGDFLRVVAYITPSMLLFSLPMAA 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++ I+ F L E++ +A GIS+ ++L P V +L G+ T+ + G
Sbjct: 74 MMAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAM 133
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQI--SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ ++ + + I + D
Sbjct: 134 DQLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTIS 193
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
+ L ++ S
Sbjct: 194 AQGGNLRADPAAGRVVLSLSDGSLHRSAGAKSQTIFFKHYNLEIPLDSPTLGPPGRSSMT 253
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+++ + YR +++ + +P+ + ++ S+S + + ++ + V
Sbjct: 254 QAQLRQRATELGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLS-QMGQGSRLALGVP 312
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
G+ S Y ++T KS G++G L A +P +L + +L +
Sbjct: 313 LGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLWR 360
>gi|254251664|ref|ZP_04944982.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
gi|124894273|gb|EAY68153.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
Length = 382
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 60/378 (15%), Positives = 115/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP TL+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI------LPENHI 175
+ +++ + Q W++ + ++ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEHVTRFVNVGSPSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R L V E + Y
Sbjct: 180 SNVRIYEFDSKFQLRNVRIAQSGRYEPPGHWLLTGVTETELTPIKPVAGQPADALSPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIVNLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|300718280|ref|YP_003743083.1| permease [Erwinia billingiae Eb661]
gi|299064116|emb|CAX61236.1| Predicted permease [Erwinia billingiae Eb661]
Length = 361
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 104/335 (31%), Gaps = 2/335 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RY + + L +L + + Y ++ ++ +P +
Sbjct: 3 IFSRYLMRNIFIGFAAAAGLLIPLFTTFNLINELDDVA-PGGYRWTQALLVVVMTLPRSL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ PFI L+ IV L+++ EL R G SI ++ +++ + V +
Sbjct: 62 VDLAPFIALLGGIVGLGQLSKSLELTAIRTAGFSISRIARVMFCAGLVMTLTLGAVDEWV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ + + + S I
Sbjct: 122 AAPLQQRALQIKNVAMAKAESDSDAGNALWARSQDDFVTVQSLDNRNQPVGIEIFSWQPD 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ I + + + + + + + ++ +
Sbjct: 182 LTLKSYIFAQSATIAGKGMWTLHNVTEKRWDKQQETVNNLPEMQWHSLFSGEDLKRLTLP 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S S ++ + + +K+ E+ + P++++AM L+A + R+
Sbjct: 242 AESFSARQLADYIVYLHKTGQPSL-EYESALWQKAGRPILILAMILLAVPFTFSTPRAPG 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+A G+ G + + + I+ + G +
Sbjct: 301 LGSRLALGVIVGLVTWIVYQIVLNLGILFSINAQL 335
>gi|220916596|ref|YP_002491900.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954450|gb|ACL64834.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 371
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 41/364 (11%), Positives = 116/364 (31%), Gaps = 13/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G++ RY + L LL ++ + + + S+ ++ + +P
Sbjct: 1 MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 60 LLGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + I+ + ++ S
Sbjct: 120 SVEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIP-GYTIYAERARGGRWENVLIQDRS 178
Query: 182 ITIDKKNKIIHRKDA--------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ HR ++ +V ++V Y K + +
Sbjct: 179 NPDAPMLALSHRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAEILVGLGTA 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + ++ + + + + R E + + PL++VA L+
Sbjct: 239 LSDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGV 298
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ R + + Y ++ + + G L A +P ++ + I
Sbjct: 299 PL--GAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGI 356
Query: 353 LILL 356
++L
Sbjct: 357 GLVL 360
>gi|332280200|ref|ZP_08392613.1| YjgP/YjgQ permease [Shigella sp. D9]
gi|332102552|gb|EGJ05898.1| YjgP/YjgQ permease [Shigella sp. D9]
Length = 386
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 381
>gi|300774823|ref|ZP_07084686.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
gi|300506638|gb|EFK37773.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
Length = 370
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 133/368 (36%), Gaps = 11/368 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS-----ISRGAVLA 55
M I+ RY K YL T + L+ I+V VID+ + ++ +
Sbjct: 1 MLKIVDRYIIKKYLGTFSFMLVLLSIVVLVIDVQQKIPRIENAKAIDPKLDLMYFLIHFY 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ ++ + + + I + +E+V + G S + P++V SI +G+
Sbjct: 61 PFWIINLVVTFLSILVFISVIYFTSRMANNTEIVAIISSGASFHRFSKPYLVTSIFIGLI 120
Query: 116 TVLVINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
++V + + +L + ++ P + + IFI + +
Sbjct: 121 ALVVYHMVLPWANIKKNELEAYTYNAANKEKILGTAPASSQLSKTEYIFIDSWNKREKRG 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP--- 231
+ D+K + + L +E + +K + + +
Sbjct: 181 SSFVYQKYDKDRKMTYELKASEVYWDKAKKQFVLNNYLEKTINKDNSEKLNNGIELRKNY 240
Query: 232 -IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ +++ E++K + + + + +P+ ++ +T +
Sbjct: 241 GHSPEELFPNELLGQNKTTPELLKFIEREKARGNSNLNSYLNELHQRTSMPVSIIILTFL 300
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A S+S + R I +A GI F+ +K ++ L P A +P ++ + L
Sbjct: 301 ALSLSSQKKR-GGLGINLAIGISLAFIFVFSFEALKVVSENKSLSPALAMWLPNLVFLPL 359
Query: 351 SILILLQK 358
++ + +++
Sbjct: 360 TLYLYIKR 367
>gi|330836571|ref|YP_004411212.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
gi|329748474|gb|AEC01830.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
Length = 363
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 44/361 (12%), Positives = 109/361 (30%), Gaps = 7/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + +L L L +L+ +DL + + L +P
Sbjct: 1 MKILDRYIMRSFLTVFLSALGICTLLLVAVDLFTNLDSYAK-NEVPFFAILRLTVLYIPD 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +I + + ++ ++EL+ GI +++ P + I + + T+
Sbjct: 60 AVSLVISPAVIFSATLTLALIHSSNELIPIFCAGIPYIRVIIPMMAVGICVSMTTLAATE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I +++ ++ + + + I ++ S
Sbjct: 120 YIVIPSRVNRVEVQTEYTGSQTSKDNRNITFVDASGRFVLHAKRYDATRQRIMNMVLIER 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDG 236
+ + L V + + + + I+
Sbjct: 180 DGPGGRMTGRTSAGMAQWDETERRWILSDVSIQNFTEGDTVLSFHEDTLMSDILDIEPGL 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + + + + A T +Y L + +IA S++
Sbjct: 240 FSYLGTDIKNMDRKTALWYLDNMKGLDPYQWATAATDYYERAYSFLTPFILMIIACSMNY 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ ++ + I + Y + K ++ P+ +P+ L I+LS L
Sbjct: 300 QYKKNV-LLFSILTSIGIAIVFYVTQLVTLLLAKQYVISPLTGVFLPLGLMIALSSAFFL 358
Query: 357 Q 357
+
Sbjct: 359 R 359
>gi|119476403|ref|ZP_01616754.1| predicted Permease [marine gamma proteobacterium HTCC2143]
gi|119450267|gb|EAW31502.1| predicted Permease [marine gamma proteobacterium HTCC2143]
Length = 374
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/355 (10%), Positives = 113/355 (31%), Gaps = 5/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY K L + +++V + Q S + R+P +
Sbjct: 2 ILFRYLAKEILISLFAVSATLLVIVMSGRFVKYLAQAA-AGKLSPDILLNIMVYRLPSFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ + + SE+ + A G+S +L +V SI + + +
Sbjct: 61 ELVLPLSLFIAILLAYGRMYVESEMTVMAACGLSDRRLAVYTLVPSICVAVVVGYLSLYA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPENHIWEDFTS 181
+ G ++ + +++ + + + + + ++ S
Sbjct: 121 SPIGIGKVQEIFEDTQNSSGLELLIEGRFRVDEQSGRVTYVESLDNDVGIMQDVFSAEQS 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + ++ I +D + + +V + I + Q
Sbjct: 181 LGSEGEEQLTVIFAEQGNIQMSDDQQSRYLVLRNGYQSVGQPGGLRYRISQFDEYGQLVR 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ ++ Y+ + + + + + + +++ + LIA ++S R
Sbjct: 241 DPAVQKTLYK-RADARTTEQLLNSTLLEDKATLQWRMSLVILVPVIALIAQALSRTSHRR 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + + + + ++ + L I +L
Sbjct: 300 GRY-VKMLPAFIIYITYLVALNAARDAIGKEKISSDLGMWWVHLVFLGLGITLLF 353
>gi|329894347|ref|ZP_08270217.1| putative permease [gamma proteobacterium IMCC3088]
gi|328923143|gb|EGG30466.1| putative permease [gamma proteobacterium IMCC3088]
Length = 353
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 57/342 (16%), Positives = 105/342 (30%), Gaps = 11/342 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + T LL + L + L + + NY+ S+ + A VP
Sbjct: 1 MRLLDRYVGMQVIYATCLVLLVLVGLDALSALIDELQDL--KANYTFSKALLYVAASVPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++ P L+ +V L TSELV+ R G+S W LL + ++ +++
Sbjct: 59 RIVELAPIGILIGVLVALGQLASTSELVVIRGAGLSSWHLLRILMKPVLVFAGLMLIMGE 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ G N W + + + T
Sbjct: 119 FVVPKSEQFGEAERALALSNKGSITGRYGMWNREGR-----HFIHFNAVQAGGVIYGVTL 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
T D ++ A+ A L+ V Q + + + D
Sbjct: 174 FTFDDNWRLHESMSANRATFQRAGWLLENVQRTQVNSWGSQTSEHTTLLWETDLTPDLLA 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S S + + + + + E + + PL + + L+A
Sbjct: 234 MESLSPERLSINGLFQYSQYLKQQGLESAD-YEVAAWRKLTQPLAIFVLVLVAMGFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
R + V G G + ++ S + P A
Sbjct: 293 LRDGTLGLRVFIGTLVGLVFKISQDVVASVTIVYGISPALAV 334
>gi|167835783|ref|ZP_02462666.1| hypothetical protein Bpse38_04778 [Burkholderia thailandensis
MSMB43]
Length = 383
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/379 (16%), Positives = 119/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ K+ P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGKLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ + N R L V + Q Y
Sbjct: 180 SDVRIYEFDSRFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTSLAGNGATSPADTLSPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|218555553|ref|YP_002388466.1| hypothetical protein ECIAI1_3128 [Escherichia coli IAI1]
gi|218362321|emb|CAQ99943.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI1]
Length = 386
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 207 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 381
>gi|325267812|ref|ZP_08134462.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
gi|324980693|gb|EGC16355.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
Length = 353
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 135/361 (37%), Gaps = 13/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY ++ T+ + L+ + + ++ ++ + NY+ + P
Sbjct: 1 MKLLSRYLI---IRLTVMSAYALLALLALYNFIDLLSEKTGIGNYTFWHAVQFTLLQTPA 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++P TL+ ++ L+ SEL + + G I + + V S + + TVL+
Sbjct: 58 RAYLLMPLATLIGGLLALSQLSSNSELAVMKTSGWHISRFIGTIVQFSFIFAVITVLLGE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA ++ + + W++ + I + + D +
Sbjct: 118 WIAPQLSSYADNMKSTARSGQLSS-TRNGVWIKQPDSMVYI-----GSMLPDKTLLDISI 171
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ A+ A++ + +L+ V + I + + ++
Sbjct: 172 WHYTPQFRLTEAIHAEKAVMRDQTWQLQNVQSSKITEERVIVQKQPARDWHMNTTNQLMD 231
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF + + + + K+N + ++ +V P+ + M L+A + +
Sbjct: 232 VLLVKPEQMSFSALTQYIGYLKKNNQQTLA-YDVAWWNKLVYPVATMVMALVALAFTPVS 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R++ + + GI G + + + + + +A++P L L++ ++ ++
Sbjct: 291 GRNHNLGLKLFGGIGLGLLFFFTGRLFGFSAQLYGVPAFLSAVLPTALFACLAVFLIYRQ 350
Query: 359 E 359
E
Sbjct: 351 E 351
>gi|24372947|ref|NP_716989.1| hypothetical protein SO_1369 [Shewanella oneidensis MR-1]
gi|24347090|gb|AAN54434.1|AE015581_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 370
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 120/357 (33%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-----WED 178
A E+ ++++ + + N + +F+ E D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +++L V YQ D Q
Sbjct: 181 PNDEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + + + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPLGELLKIDGPEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ + + ++ + + G++ + + + IL+L
Sbjct: 294 VRQGKFAKMLP-AVLLYLGYFGLMVAGRKALQDGVIPLYLGMWWIHLSALIMGILLL 349
>gi|331654590|ref|ZP_08355590.1| putative permease [Escherichia coli M718]
gi|331047972|gb|EGI20049.1| putative permease [Escherichia coli M718]
Length = 386
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 381
>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 383
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 126/363 (34%), Gaps = 12/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY F+ T L L + ++ + ++ +S+ A + +P I+
Sbjct: 2 TLYRYIFREIWPTFLASLFVFIFIMMAARMLS-ITELIVTRGVHLSQVAGMVLFLIPDIL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P +TL+ +V F L+ SE++ ++ GIS++Q+L P + S+ + V +
Sbjct: 61 TFALPAVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVAISTFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G + DL+ + + + + +
Sbjct: 121 APWGNRSFKDLLFKIAETKADLGIKERIFCEPFENLVFYVNSFSREERMLKDVFVVDRRD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK---------M 234
+ N I+ + + + L + + + S T+ +
Sbjct: 181 QEMTNTIVSDEAQIIPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFNTYALNIGLKDVL 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S ++I K+ + + R + + IPL + M +I +
Sbjct: 241 ADLASRKKAPHELSVNQLISKLKST-PNTDKEYSRIMRELLEKLSIPLAVFFMGIIGVPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R V + + Y + I++S +G L P A IP + I + +
Sbjct: 300 GAQI-RGRGRSAGVGVSLVVFALYYLFLMIIRSIASTGALSPAFAVWIPDLFLIVSVVYL 358
Query: 355 LLQ 357
L +
Sbjct: 359 LRR 361
>gi|126441903|ref|YP_001058063.1| hypothetical protein BURPS668_1013 [Burkholderia pseudomallei 668]
gi|126221396|gb|ABN84902.1| putative membrane protein [Burkholderia pseudomallei 668]
Length = 383
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/379 (16%), Positives = 118/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ + P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGAASPVDTLNPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|53718605|ref|YP_107591.1| putative permease [Burkholderia pseudomallei K96243]
gi|167814687|ref|ZP_02446367.1| putative permease protein [Burkholderia pseudomallei 91]
gi|167909936|ref|ZP_02497027.1| putative permease protein [Burkholderia pseudomallei 112]
gi|52209019|emb|CAH34959.1| putative permease protein [Burkholderia pseudomallei K96243]
Length = 383
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/379 (16%), Positives = 118/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ + P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|330752158|emb|CBL87118.1| predicted permease YjgP/YjgQ, transmembrane [uncultured
Flavobacteria bacterium]
Length = 359
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 2/354 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F +L + FL M++ V D+++ + + +
Sbjct: 4 LDRYIFFRFLGSFFLFLGLVMMIAVVFDISQKVDNFINKNADISTIIIDYYVNFLAFYGT 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + I V + R SE+V + G+S +L+ PF++G+++L I + + +
Sbjct: 64 TFSSLIVFLSTIFVTGRMARDSEIVAALTGGVSFPRLIKPFLLGALVLFIGNSTLSHFVI 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I + + ++ I + + I + + L H +
Sbjct: 124 PKTNIARIHFEDTYVQDKIIKRPINIHRQVLPDHYIYIETWSPERLGGYHFSYERFENDR 183
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQ 243
+ + D + + G + ++ +
Sbjct: 184 MIEKLMADFVRYDTSQKQWQVDNWTLRTWLKSGEMKLESGRRLDTSFAFDPTTISPDLRS 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + +++K + S E +++ I P + + IA +S R
Sbjct: 244 TSTMTSPQLLKYLKKERISGSEAITSHEMEWHKRIAYPFSVFILVFIAVVLS-SEKRRGG 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ + + + I A +P L L ++ ++
Sbjct: 303 IGGQIAIGLLIAVIYIFFMQLGGVLVSIPIFSAFMAIWLPNFLFTILGFVLYIR 356
>gi|167580135|ref|ZP_02373009.1| hypothetical protein BthaT_18420 [Burkholderia thailandensis TXDOH]
Length = 383
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/379 (16%), Positives = 119/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ + P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P ++ M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|331648770|ref|ZP_08349858.1| putative permease [Escherichia coli M605]
gi|331042517|gb|EGI14659.1| putative permease [Escherichia coli M605]
Length = 386
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 147 WGASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 381
>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli 55989]
Length = 386
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDV-NPGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S ++ +++ ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNSFSVRQLNHYINYLQETGQPSS-EYRLALWEKLGHPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G + + IM + G L AAL + + +++++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVY 380
>gi|114562103|ref|YP_749616.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
gi|114333396|gb|ABI70778.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
Length = 370
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 109/349 (31%), Gaps = 14/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY LK LL + + + + + S L +P +
Sbjct: 2 IVFRYLISEVLKAQFAVLLVLLTIFISQQFVRVLADASD-GEFPASLVMTLLGLNLPQLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ + +FT + +
Sbjct: 61 VLVLPLSFFLAILLAHGRMYAENEMVVLHGVGVSEWYVTRVTLLLAFANLLFTAYLSVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
E+ ++++ + + N + +F+ D
Sbjct: 121 GPWAEERQNQVLEKAQSEAGLAALTQGRFQASPNGRAVLFVEKINKDNTLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ I + +++L+K YQ ++ Q
Sbjct: 181 PEDENGLTNIVVANKGRVIEDNIGSQQLQLEKGFRYQGSPKSLELQVIEFGGYKMEIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S I + + A +F + + IP+ + +TLIA ++
Sbjct: 241 EVDERRRKLSAMPIDELLDT-------PGPEAAAEFQWRLAIPIAIPLLTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
R + + I + ++ + + ++
Sbjct: 294 VRQGKFAK-MGPAILLYLGYFGLMIAGRKALQDEVVPQYLGMWWIHGFA 341
>gi|297565836|ref|YP_003684808.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296850285|gb|ADH63300.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/372 (9%), Positives = 119/372 (31%), Gaps = 25/372 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L G + + +I + + + + ++ ++P I
Sbjct: 4 IDRYLLREILPPF---FFGIFLYIALIAFSNLLARAQWVGGVPVTSLLQWIGLQIPFIFT 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P TL+ ++ + L+R +EL++ +A GIS+ + ++G+ L F++ + +
Sbjct: 61 QTLPLATLLGVLIGYSRLSRENELLVMQAGGISVLRTARWILLGAAALAGFSLYLSERVV 120
Query: 125 TSGEKI-GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++I + ++
Sbjct: 121 PWANQQTAVVWWDKVATGTSGLGWLTGRDLKIGDYLLLFDSYDNAHQEIVNVRLQQWKGQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + L +D+ L ++ +
Sbjct: 181 TLSVVFAERGRLENYQLKLRGFRLYTLDLAKLPVPDFQSLDEVEQYLPQLVRAQNVSRDP 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP-------------------L 282
+ + + ++ + F N + ++ + P +
Sbjct: 241 QASLVITLPQNRDQLVANFAGGGFENPYPPSHWWRRLQNPTLTPTEAREARVNLHSALAV 300
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
L + ++ ++ + R++ P + + + Y ++++ K SG++
Sbjct: 301 SLANLVILFLALPVAARRASSPAVALGLALGLTIAYYAVLSLGKLMALSGLIPAELGVWS 360
Query: 343 PVILTISLSILI 354
+L ++++ +
Sbjct: 361 ANLLAVAVAFWL 372
>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
Length = 386
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S ++ +++ ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNSFSVRQLNHYINYLQETGQPSS-EYRLALWEKLGHPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G + + IM + G L AAL + + +++++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVY 380
>gi|325527103|gb|EGD04518.1| putative permease [Burkholderia sp. TJI49]
Length = 382
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 117/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R + LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQKGSYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|237736826|ref|ZP_04567307.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420688|gb|EEO35735.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 358
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/358 (11%), Positives = 112/358 (31%), Gaps = 13/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ +Y ++ + + F+ID+ + + SI + + +P
Sbjct: 1 MKLIDKYILNEIKIPVIFGVSLFTFI-FLIDIIVAMMENIIVKGISIIDVMRILSFYLPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F RTSE A+G+S+ ++ P V + + +F +
Sbjct: 60 ILSQTIPMGMFLGIMLTFSKFTRTSEATAMSAVGMSLRDIVKPIFVAACCVTLFIFFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I L + + ++ + + + ++ + +
Sbjct: 120 SIIPRSVAKLQFLTAKIAYENPVFQLKEKTFIDEVD---EYNLYIDRMEGKEKKAKGILI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
+ + A + + L Y + + + + +
Sbjct: 177 FQKAEDKPFPTVIVGEEAYWKDSAMVLINSKFYNFNDKGKEVLRGEFDEKRIPLAAYFSE 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + + + + +P + ++L+ +S+
Sbjct: 237 IEVKVKDIEAMGIGTL---LKEMKDKTPAEKIPYKVEINKKLAVPFSTMMLSLLGVFLSI 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + A + F T + + GI+ IP ++ L++ +
Sbjct: 294 GHHRSGK-GANFALSLIVIFSYITCLNVGMVMATKGIIPAFIGVWIPNVILFLLTLFM 350
>gi|326567797|gb|EGE17901.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 12P80B1]
Length = 369
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 128/368 (34%), Gaps = 18/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISET--YTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + W + + E + E
Sbjct: 123 LPTANQHAATIRADTIYDKLITID--GYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQL 180
Query: 184 IDKK-------------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
D + + +A A + ++ L +
Sbjct: 181 KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTL 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
PI +++ S + R E F+ ++ P ++++ L+
Sbjct: 241 PIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL-RHELAFWQKLLSPFAVLSLVLV 299
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A+S RS + V + +G + + + + L P+ AL+P++L+
Sbjct: 300 ASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLSAMA 359
Query: 351 SILILLQK 358
+ +L +K
Sbjct: 360 GMYLLNRK 367
>gi|261749332|ref|YP_003257017.1| hypothetical protein BPLAN_247 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497424|gb|ACX83874.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 361
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 113/357 (31%), Gaps = 7/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L T ++ + I+ +IDL++ +++
Sbjct: 1 MKILDRYIIRNILVTFIFITILLQIISVIIDLSQRMHRLENNQGSIKDALIYYYPFWSIW 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I LN+ SE+ A GIS ++ P+++ + L+G+ +++
Sbjct: 61 LAYTFSPISVFLSIIFFTSRLNKHSEINAILASGISFKRITIPYLISASLIGMGALIINY 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
K+ Q+ + + + + ++ + + +I +D
Sbjct: 121 SFLPLANKMKNKFHYQYLLSSRYKNKYENNQTISTQISNNEYLFIRNFSRKKNIGQDCIY 180
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
+ I + + L E + N + +
Sbjct: 181 QKFNGNKLIYLLKAKNIFWYKKHRIYILSNYSETYLNKNKDIFFKGVHKIQNFSMTPEEL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ K + K + ++Y P +TL+ S+S
Sbjct: 241 LPEEYIAETMTISELRKFIDREKKRGNSNINTHLNEYYQRTSYPFSNFILTLLGLSIS-- 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +P GI F+ I K + + + +P + ++ +
Sbjct: 299 -SKKGEPAHNFIMGIILAFIYIFCTEISKVYSTKDYIPSYLSVWLPNGIFGMITFFL 354
>gi|55980366|ref|YP_143663.1| hypothetical protein TTHA0397 [Thermus thermophilus HB8]
gi|55771779|dbj|BAD70220.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 347
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 107/355 (30%), Gaps = 12/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L LL ++L + E+ + R P
Sbjct: 1 MKTLDRYLLRETLPLFGGGLLVIVLLFLGGAVYEVLAPLVAK-GADPYTLLRYLLFRTPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P L +V+ L +EL A+G+ +LL PF++ + + L+
Sbjct: 60 ALARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G DL+++ + Q + + +
Sbjct: 120 GLVPQALAKGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGALRVLSREE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + ++ R + T +
Sbjct: 180 VLLAERGSFRGGVLHVEEGTRITYEGSRPRTLARFQRGELVLKDLTFDPWQNPA------ 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ K++ + + T +Y PL L A ++
Sbjct: 234 ---NRMTLAELRKEVQRLRQMGVRAGLE-ATTYYRRFAEPLAAPVFALFAVGLAFYLLGG 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ +V + + F Y ++ + G+ L P AA P +L +L + + L
Sbjct: 290 SRSLGLVGVAVLTFF-YYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFL 343
>gi|114319720|ref|YP_741403.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226114|gb|ABI55913.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 372
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/358 (10%), Positives = 105/358 (29%), Gaps = 11/358 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L LL ++ L L + +
Sbjct: 10 DRYLVREVLFAWLAVLLVLFAVLATNRLIGYLGDAAG-GELPGGVILTLLGLQTVRYLGM 68
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P + ++ F L R SE+ + A GI W+ + ++ L L+
Sbjct: 69 ILPASFFLGIVLAFGRLYRDSEMAVMSACGIGPWRQFRALLWLALPLAGLVGLLSLYWGP 128
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + + ++Q + + + + + F
Sbjct: 129 AATQKAEQVQAEAEAQVEFAALQAGRFLQARGATEGTLYLERLSEDQREMEDVFIRAGGT 188
Query: 186 KKNKIIHRK---DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + + + L Y D + +
Sbjct: 189 ADRVVLAARRGVQEKDPETGDRYLVLLDGWRYDGRPGAAD------WRVTRFERHGVLVA 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + + + + + + + + +P M + + L+A +S R
Sbjct: 243 EGSEEVAVRLRRNAQPTAELWGSDHPADRAEVQWRLAMPAMTLLLALLAVPLSKSAPRDG 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + + +T+ + + ++G + +++ +L LL + D
Sbjct: 303 RYG-RLLSAVLVYVGYFQFLTVGQDWLETGQVPAALGLWWLHGAVLAVGVLGLLWRFD 359
>gi|197121803|ref|YP_002133754.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
gi|196171652|gb|ACG72625.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
Length = 371
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/363 (11%), Positives = 120/363 (33%), Gaps = 11/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G++ RY + L LL ++ + + + S+ ++ + +P
Sbjct: 1 MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 60 LLGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + A+ EN + +D ++
Sbjct: 120 SVEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYAERARGGRWENVLIQDRSN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIKM 234
H + + + ++ L++ ++ D S + +
Sbjct: 180 PDAPMLALSRHGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + ++ + + + + R E + + PL++VA L+
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ R + + Y ++ + + G L A +P ++ ++ +
Sbjct: 300 L--GAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAVGVG 357
Query: 354 ILL 356
++L
Sbjct: 358 LVL 360
>gi|218691270|ref|YP_002399482.1| hypothetical protein ECED1_3629 [Escherichia coli ED1a]
gi|218428834|emb|CAR09635.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
Length = 386
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 381
>gi|161524005|ref|YP_001579017.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189351234|ref|YP_001946862.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
gi|160341434|gb|ABX14520.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189335256|dbj|BAG44326.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
Length = 382
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NHQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|221199306|ref|ZP_03572350.1| putative membrane protein [Burkholderia multivorans CGD2M]
gi|221205792|ref|ZP_03578807.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221174630|gb|EEE07062.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221180591|gb|EEE12994.1| putative membrane protein [Burkholderia multivorans CGD2M]
Length = 382
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIRPIAGQAPDALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NHQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|134296647|ref|YP_001120382.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
gi|134139804|gb|ABO55547.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
Length = 382
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 117/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + +SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSLINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|331643680|ref|ZP_08344811.1| putative permease [Escherichia coli H736]
gi|331037151|gb|EGI09375.1| putative permease [Escherichia coli H736]
Length = 386
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PF+ L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 87 TLVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 381
>gi|238028371|ref|YP_002912602.1| hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
gi|237877565|gb|ACR29898.1| Hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
Length = 382
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G Y+ + A + P
Sbjct: 1 MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGH-GAYNFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP TL+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------------------------N 157
I +++ + + + W++ +
Sbjct: 120 FIGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
I+ K +N + D L I D K + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + S + + + + + N + +
Sbjct: 240 SEQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRE-NQQDTQTYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A +P ++ ++L + L
Sbjct: 359 LTAALPALIYLALGLFAL 376
>gi|83720791|ref|YP_441377.1| hypothetical protein BTH_I0821 [Burkholderia thailandensis E264]
gi|167618241|ref|ZP_02386872.1| hypothetical protein BthaB_18181 [Burkholderia thailandensis Bt4]
gi|257139950|ref|ZP_05588212.1| hypothetical protein BthaA_12230 [Burkholderia thailandensis E264]
gi|83654616|gb|ABC38679.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 383
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/379 (16%), Positives = 118/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ + P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|282878370|ref|ZP_06287162.1| putative membrane protein [Prevotella buccalis ATCC 35310]
gi|281299556|gb|EFA91933.1| putative membrane protein [Prevotella buccalis ATCC 35310]
Length = 410
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/352 (14%), Positives = 114/352 (32%), Gaps = 4/352 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y + ++ T +Y + + + V D NE ++ E + + A VP
Sbjct: 53 IDWYIIRKFIGTYIYSIALIIAIAIVFDFNENLSKFTEYHAPARAIIFDYYANFVPYYSN 112
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ A GIS +L+ P+++ +L+ + + +
Sbjct: 113 LFSPLFVFIAVIFFTSKLAGNSEIIAMLASGISFKRLMRPYMLSCVLIASLSYYLSASVI 172
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G I + ++++ + +D + I K D
Sbjct: 173 PHGTVIRHNFESLYRNSRKQTAADNVQLQVGKGVIAYIQHYDNKTKRGYGFSLDKFENKK 232
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKFS 241
+ D + Q + S I ++
Sbjct: 233 LVSHMTAMEIQYDTIADSKYHWNVTGWKIRQLKGLREHITSGADLDTLIQMEPTDLVYSK 292
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q + + E+ +S + + + +++ I +T+I S+S R
Sbjct: 293 GQQETFTSAELKDYISKQVDRGSSNVVQYQVEYHKRIASSFASFILTIIGFSLSAR-KRK 351
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + G+ + + T+ +F + P+ AA IP I+ ++
Sbjct: 352 GGMGLYLGLGLALSSLYILLQTVSATFAINANAPPILAAWIPNIIFALVAYF 403
>gi|170697654|ref|ZP_02888742.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
gi|170137402|gb|EDT05642.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
Length = 382
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L I T ++
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYMIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGAPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|26249547|ref|NP_755587.1| hypothetical protein c3716 [Escherichia coli CFT073]
gi|254162933|ref|YP_003046041.1| hypothetical protein ECB_02855 [Escherichia coli B str. REL606]
gi|26109955|gb|AAN82160.1|AE016766_248 Hypothetical protein c3716 [Escherichia coli CFT073]
gi|253974834|gb|ACT40505.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253978989|gb|ACT44659.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|309703415|emb|CBJ02754.1| putative permease [Escherichia coli ETEC H10407]
Length = 386
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 381
>gi|326559486|gb|EGE09909.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 7169]
gi|326568201|gb|EGE18283.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC8]
Length = 369
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 128/368 (34%), Gaps = 18/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISET--YTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + W + + E + E
Sbjct: 123 LPTANQHAAAIRADTIYDKLITID--GYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQL 180
Query: 184 IDKK-------------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
D + + +A A + ++ L +
Sbjct: 181 KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTL 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
PI +++ S + R E F+ ++ P ++++ L+
Sbjct: 241 PIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL-RHELAFWQKLLSPFAVLSLVLV 299
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A+S RS + V + +G + + + + L P+ AL+P++L+
Sbjct: 300 ASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLSAMA 359
Query: 351 SILILLQK 358
+ +L +K
Sbjct: 360 GMYLLNRK 367
>gi|301058948|ref|ZP_07199917.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446944|gb|EFK10740.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 355
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 120/357 (33%), Gaps = 9/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y +LK L +L +L +I+ + +G+ Y + +L +P
Sbjct: 1 MKLLDIYIGSRFLKCFLLVILILAVLFSLIEFLSQLDDVGKGM-YRVENALLLVMLTLPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ ++ L EL+ + GIS ++ P +L+ + + ++
Sbjct: 60 CLLDLLPISALLGGVISLGLLADHGELLAMQNAGISAPRVCAPVFATLMLVIMTSGIMAE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I E++ + + W +Q+ +I KIL E
Sbjct: 120 TIIPDMEQMARKSRTRALYGAGVNVTRHGFW----ARRQNAYIHVHKILDEGVAAGVDIF 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
+ I+ + + L + + + + S TL + D
Sbjct: 176 EFDPRGRLKTFTHALSARILGHQQWSLTGIRQTVFKDRGVAIKGAASWTLEPFLSPDQVA 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S ++I + + + + +PL M L + + L
Sbjct: 236 LLELSPYCLSTPDLIGYIKALED-GGQNADPYRLALWRKLGVPLTTGVMVLFSVTFVLGA 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + + G +LY ++ G L P A++PV+ L++ L
Sbjct: 295 NRKVRAGSRITMASLIGLLLYFADQLIMHTGLLLNLNPPITAMLPVVFISGLAVWRL 351
>gi|194431684|ref|ZP_03063975.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
gi|194420040|gb|EDX36118.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
gi|320180990|gb|EFW55911.1| Permease Ygh-P2, YjgP/YjgQ family [Shigella boydii ATCC 9905]
gi|332086635|gb|EGI91775.1| hypothetical protein SB521682_3569 [Shigella boydii 5216-82]
gi|332088218|gb|EGI93339.1| hypothetical protein SD15574_3351 [Shigella dysenteriae 155-74]
Length = 359
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++A +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVALMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|293416424|ref|ZP_06659063.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
gi|291431780|gb|EFF04763.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
Length = 359
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQAMQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKMWILHGVNHKKWLNGKETLDTSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPS-SEYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|116690488|ref|YP_836111.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|170733809|ref|YP_001765756.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
gi|116648577|gb|ABK09218.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|169817051|gb|ACA91634.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
Length = 382
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|78067268|ref|YP_370037.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
gi|77968013|gb|ABB09393.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
Length = 382
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLRNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|331684625|ref|ZP_08385217.1| putative permease [Escherichia coli H299]
gi|331078240|gb|EGI49446.1| putative permease [Escherichia coli H299]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDNLPWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|254247470|ref|ZP_04940791.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
gi|124872246|gb|EAY63962.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
Length = 382
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLAANQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|107023406|ref|YP_621733.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
gi|105893595|gb|ABF76760.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
Length = 382
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 117/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L+ + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLHSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|307310386|ref|ZP_07590034.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|306909281|gb|EFN39776.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315062298|gb|ADT76625.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|323377117|gb|ADX49385.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSS-GGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|114048399|ref|YP_738949.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
gi|113889841|gb|ABI43892.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
Length = 370
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 117/357 (32%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILALINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ L V YQ D Q
Sbjct: 181 PNDEIGLTNVVVAKGGRVQEDQNGSQQLHLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + M + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALSLADLMKVEGPEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ + + ++ + + G++ + + + IL+L
Sbjct: 294 VRQGKFAKMLP-AVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLL 349
>gi|256019097|ref|ZP_05432962.1| hypothetical protein ShiD9_09284 [Shigella sp. D9]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|86147550|ref|ZP_01065860.1| putative permease [Vibrio sp. MED222]
gi|85834589|gb|EAQ52737.1| putative permease [Vibrio sp. MED222]
Length = 366
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 111/352 (31%), Gaps = 11/352 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLVLSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++ + + + +FI ++++
Sbjct: 121 SPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ K D+ + + + + ++ +D T + G ++
Sbjct: 181 DSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQREVE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ I + + RA+ + + + + L + +T++ +S R
Sbjct: 241 KKGREWEAIPTIDLIGNQD-------NRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + I + I+ KS + G + L + ++I
Sbjct: 294 GRFAK-IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIG 344
>gi|300973447|ref|ZP_07172203.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|301048206|ref|ZP_07195242.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300299964|gb|EFJ56349.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300410789|gb|EFJ94327.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|315291259|gb|EFU50619.1| conserved hypothetical protein [Escherichia coli MS 153-1]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 113/356 (31%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 120 WGASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|171316729|ref|ZP_02905941.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
gi|171098079|gb|EDT42894.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
Length = 382
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
+ +++ + Q W+ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAAHENGEQVTRFVNVGNLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R L V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|86158887|ref|YP_465672.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775398|gb|ABC82235.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
Length = 371
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/364 (10%), Positives = 114/364 (31%), Gaps = 13/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G++ RY + L LL ++ + + + S+ ++ + +P
Sbjct: 1 MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 60 LLGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + I+ + ++ S
Sbjct: 120 SVEPASIRAARLRLNDVVKRNVTNDVRGGTFYDQIP-GYTIYTERARGGRWENVLIQDRS 178
Query: 182 ITIDKKNKIIHRKDA--------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ R ++ +V ++V Y K + +
Sbjct: 179 NPDAPMLALSRRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTA 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + ++ + + + + R E + + PL++VA L+
Sbjct: 239 LSDRNVLAKSSREATVSDLRARAAAAREKGDVVEERRQEGYLHRKLSAPLVVVAFALLGV 298
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ R + + Y ++ + + G L A +P ++ + +
Sbjct: 299 PL--GAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGV 356
Query: 353 LILL 356
++L
Sbjct: 357 ALVL 360
>gi|300993118|ref|ZP_07180204.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
gi|300305133|gb|EFJ59653.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 120 WGASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|260845739|ref|YP_003223517.1| hypothetical protein ECO103_3663 [Escherichia coli O103:H2 str.
12009]
gi|257760886|dbj|BAI32383.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
12009]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|85713126|ref|ZP_01044159.1| Predicted permease [Idiomarina baltica OS145]
gi|85693042|gb|EAQ31007.1| Predicted permease [Idiomarina baltica OS145]
Length = 371
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 125/359 (34%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+++Y LK+ + L+ M + + + E + S L + +P ++
Sbjct: 3 IFKYLIAETLKSQIAVLVVLMTIFVSQKFVRVLSDASE-GDIPSSIIFQLLSLNLPALLA 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IIP + ++ + +E+ + A G+S W + +V +++L + T + +
Sbjct: 62 LIIPLSLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVVAVILALLTAALTMYVV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + + Q SN + IFI ++ +
Sbjct: 122 PWSLEQEQKIEDKARADSGLTALIPGRFQQSSNGKAVIFIQSQDDQGDLQNVFVAQHQAE 181
Query: 185 DKKNK-----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-LNIPIKMDGFQ 238
+ + + + + + ++L+ + S + IK
Sbjct: 182 QGRIRSGSVVVSTSGEVNTESSGSQWLELRDGKRFAGDGEHYQLMSFEQYRLQIKEQPVD 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ ++ S + + + + I IPL + +TLIA +S
Sbjct: 242 EQLRDLEAYTVNELWQEQSNAAAAEL----------QWRIAIPLAMPLLTLIAVPLSRVN 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A I + ++ KS + G++ + + I +L +
Sbjct: 292 PRQGKFA-RMAPAILIYLGYFLVLMAAKSAVRDGVIPTFIGLWWIHVALLVFGIALLSR 349
>gi|116327483|ref|YP_797203.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116331903|ref|YP_801621.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
gi|116120227|gb|ABJ78270.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116125592|gb|ABJ76863.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
Length = 386
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 116/362 (32%), Gaps = 9/362 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F + K + ++ ++ + +N+ A+ +P I
Sbjct: 26 KILDRYLFGEFFKVFIGTVVLLTGIMLLSLVNDNMRNFTTTK-APRYHVALFLVYSLPKI 84
Query: 63 IQ-QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++ + + ELV A G+S ++++ P ++ IL+ I + V
Sbjct: 85 ISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVAPLILFGILMWIVMLFVTE 144
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I K+ + + + + E + ++
Sbjct: 145 LIVRPVNKLAKIEHDILTEGMGTLANSVYQFHVKGKEGFYYLYFYDPNKDEINGGFNYIR 204
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
+ D + + K+KKV E+ + +P
Sbjct: 205 LRNDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQESFEEKEYELPEDPTY 264
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F+ + + +++ ++ + T+ + + +P+M + +TLI
Sbjct: 265 FKIPAGSVEEMNLFQLKEEEKRRIQKG-LSYGDVLTEKHSVFALPMMTIIVTLIGTIAGY 323
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ + I + Y + KS G++G++ P I L + L +
Sbjct: 324 FTKKTAGVA-SLGITIGVVLIYYIFNSAGKSLGENGVIPPFVGVWITPSLFLGLCFWMFR 382
Query: 357 QK 358
+
Sbjct: 383 RM 384
>gi|157162459|ref|YP_001459777.1| YjgP/YjgQ permease [Escherichia coli HS]
gi|188495921|ref|ZP_03003191.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|209920455|ref|YP_002294539.1| hypothetical protein ECSE_3264 [Escherichia coli SE11]
gi|300815539|ref|ZP_07095763.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|157068139|gb|ABV07394.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
gi|188491120|gb|EDU66223.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|209913714|dbj|BAG78788.1| conserved hypothetical protein [Escherichia coli SE11]
gi|300531468|gb|EFK52530.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|320201893|gb|EFW76468.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli EC4100B]
gi|323183568|gb|EFZ68965.1| hypothetical protein ECOK1357_3348 [Escherichia coli 1357]
gi|323946694|gb|EGB42715.1| YjgP/YjgQ permease [Escherichia coli H120]
gi|324018178|gb|EGB87397.1| hypothetical protein HMPREF9542_03233 [Escherichia coli MS 117-3]
gi|324119791|gb|EGC13671.1| YjgP/YjgQ permease [Escherichia coli E1167]
Length = 359
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|206561016|ref|YP_002231781.1| putative permease [Burkholderia cenocepacia J2315]
gi|198037058|emb|CAR52979.1| putative permease protein [Burkholderia cenocepacia J2315]
Length = 382
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 116/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYITFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|53725612|ref|YP_102445.1| hypothetical protein BMA0670 [Burkholderia mallei ATCC 23344]
gi|67640814|ref|ZP_00439608.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|76811145|ref|YP_332584.1| hypothetical protein BURPS1710b_1173 [Burkholderia pseudomallei
1710b]
gi|121600496|ref|YP_993650.1| hypothetical protein BMASAVP1_A2341 [Burkholderia mallei SAVP1]
gi|124384824|ref|YP_001028888.1| hypothetical protein BMA10229_A2944 [Burkholderia mallei NCTC
10229]
gi|126449595|ref|YP_001081199.1| hypothetical protein BMA10247_1655 [Burkholderia mallei NCTC 10247]
gi|126453481|ref|YP_001065300.1| hypothetical protein BURPS1106A_1020 [Burkholderia pseudomallei
1106a]
gi|134281127|ref|ZP_01767836.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|167003638|ref|ZP_02269424.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|167718521|ref|ZP_02401757.1| hypothetical protein BpseD_05832 [Burkholderia pseudomallei DM98]
gi|167737553|ref|ZP_02410327.1| hypothetical protein Bpse14_05780 [Burkholderia pseudomallei 14]
gi|167823141|ref|ZP_02454612.1| hypothetical protein Bpseu9_05658 [Burkholderia pseudomallei 9]
gi|167844705|ref|ZP_02470213.1| hypothetical protein BpseB_05393 [Burkholderia pseudomallei B7210]
gi|167893240|ref|ZP_02480642.1| hypothetical protein Bpse7_05710 [Burkholderia pseudomallei 7894]
gi|167901697|ref|ZP_02488902.1| hypothetical protein BpseN_05420 [Burkholderia pseudomallei NCTC
13177]
gi|167917973|ref|ZP_02505064.1| hypothetical protein BpseBC_05418 [Burkholderia pseudomallei
BCC215]
gi|217419559|ref|ZP_03451065.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|226194459|ref|ZP_03790057.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|237811280|ref|YP_002895731.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
gi|242314384|ref|ZP_04813400.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|254177658|ref|ZP_04884313.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|254181441|ref|ZP_04888038.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|254190840|ref|ZP_04897347.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|254196385|ref|ZP_04902809.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|254199347|ref|ZP_04905713.1| putative membrane protein [Burkholderia mallei FMH]
gi|254205663|ref|ZP_04912015.1| putative membrane protein [Burkholderia mallei JHU]
gi|254259902|ref|ZP_04950956.1| putative membrane protein [Burkholderia pseudomallei 1710a]
gi|254357821|ref|ZP_04974094.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|52429035|gb|AAU49628.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
gi|76580598|gb|ABA50073.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
gi|121229306|gb|ABM51824.1| putative membrane protein [Burkholderia mallei SAVP1]
gi|124292844|gb|ABN02113.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126227123|gb|ABN90663.1| putative membrane protein [Burkholderia pseudomallei 1106a]
gi|126242465|gb|ABO05558.1| putative membrane protein [Burkholderia mallei NCTC 10247]
gi|134247433|gb|EBA47518.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|147748943|gb|EDK56017.1| putative membrane protein [Burkholderia mallei FMH]
gi|147753106|gb|EDK60171.1| putative membrane protein [Burkholderia mallei JHU]
gi|148026948|gb|EDK84969.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|157938515|gb|EDO94185.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|160698697|gb|EDP88667.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|169653128|gb|EDS85821.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|184211979|gb|EDU09022.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|217396863|gb|EEC36879.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|225933544|gb|EEH29533.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|237504053|gb|ACQ96371.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
gi|238521609|gb|EEP85059.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|242137623|gb|EES24025.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|243060864|gb|EES43050.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|254218591|gb|EET07975.1| putative membrane protein [Burkholderia pseudomallei 1710a]
Length = 383
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/379 (16%), Positives = 118/379 (31%), Gaps = 27/379 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L V + + I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
I +++ + + + W+ + + F+ + P++ I
Sbjct: 120 FIGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-------------------Y 216
+ K N R L V + Q Y
Sbjct: 180 SDVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVY 239
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ +L + S + + + + + N R + +
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKE-NQQDTQRYDIALWR 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P + M +++ + +R+ + V GI G T+ G
Sbjct: 299 KLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPA 358
Query: 337 VAAALIPVILTISLSILIL 355
A +P + ++L + L
Sbjct: 359 PLTAALPGCIYLALGLFAL 377
>gi|46198337|ref|YP_004004.1| hypothetical protein TTC0029 [Thermus thermophilus HB27]
gi|46195959|gb|AAS80377.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
Length = 347
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 107/355 (30%), Gaps = 12/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L LL ++L + E+ + R P
Sbjct: 1 MKTLDRYLLREALPLFGGGLLVIVLLFLGGAVYEVLAPLVAK-GADPYTLLRYLLFRTPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P L +V+ L +EL A+G+ +LL PF++ + + L+
Sbjct: 60 ALARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G DL+++ + Q + + +
Sbjct: 120 GLVPQALAQGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGALRVLSREE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + ++ R + T +
Sbjct: 180 VLLAERGSFRGGVLHVEEGTRITYEGSRPRTLARFQRGELVLKDLTFDPWQNPA------ 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ K++ + + T +Y PL L A ++
Sbjct: 234 ---NRMTLAELRKEVQRLRQMGVRAGLE-ATTYYRRFAEPLAAPVFALFAVGLAFYLLGG 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ +V + + F Y ++ + G+ L P AA P +L +L + + L
Sbjct: 290 SRSLGLVGVAVLTFF-YYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFL 343
>gi|191172563|ref|ZP_03034103.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|190907231|gb|EDV66830.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|324011926|gb|EGB81145.1| hypothetical protein HMPREF9533_04084 [Escherichia coli MS 60-1]
Length = 359
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 120 WGASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|326388616|ref|ZP_08210209.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
gi|326206867|gb|EGD57691.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
Length = 420
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 123/362 (33%), Gaps = 10/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y + L + A L+ + + ++ + + + + A +P
Sbjct: 7 IDKYIARLVFVPMLSVFVIAASLLVLDKMLKLFDFVATQGG-PVGIVFKMLANLMPEYAS 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP ++ ++ F L +SEL + RA+G+S +LL + + +L +L+++ +
Sbjct: 66 LAIPLGLMLGILLAFRKLATSSELDVMRAVGLSYTRLLRVPYILAFVLAALNLLIVSYVQ 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+L + + + + + + ++ +
Sbjct: 126 PLSRYYYEELQFELRSGALGASIKVGEFNSLQDRTALRVESSRDDGRQLQGIFARVVGKD 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI--------DKNSTTLNIPIKMDG 236
+ I R+ A N + ++ + Q + S L I +
Sbjct: 186 GQILVISAREGQFFANRENPDTVILRLTDGQIVQESPTIRNPRVLTFASHDLPIDLPKIE 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ F + + +S S Y++ +F +V M+ + ++A ++++
Sbjct: 246 QFRRRGDQDREYFLPELLHIGWSQDSTPQMRYQSLASLHFRLVEVAMMFLLPMLAMALAV 305
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS+ + V I + + + G + P A P + +L + +
Sbjct: 306 PPKRSSS-SLGVFVSIILVVAYHKVNEYGQDVSSLGRIDPTIALWGPFFIFAALIMWMYW 364
Query: 357 QK 358
+
Sbjct: 365 RL 366
>gi|291284362|ref|YP_003501180.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|290764235|gb|ADD58196.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|320656363|gb|EFX24270.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661734|gb|EFX29142.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. USDA 5905]
gi|320666885|gb|EFX33861.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O157:H7 str. LSU-61]
Length = 359
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|312968689|ref|ZP_07782898.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312286907|gb|EFR14818.1| conserved hypothetical protein [Escherichia coli 2362-75]
Length = 359
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|91212393|ref|YP_542379.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
gi|218560054|ref|YP_002392967.1| hypothetical protein ECS88_3361 [Escherichia coli S88]
gi|237706274|ref|ZP_04536755.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91073967|gb|ABE08848.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
gi|218366823|emb|CAR04593.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|226899314|gb|EEH85573.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 386
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + + + + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQDTGQPSS-EYHLALWEKLGQPILTLAMILLAVPFTFSVPRS 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 326 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 381
>gi|113971161|ref|YP_734954.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|117921444|ref|YP_870636.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
gi|113885845|gb|ABI39897.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|117613776|gb|ABK49230.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
Length = 370
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 119/357 (33%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWED 178
A E+ ++++ + + N + +F+ D
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + +++L V YQ D Q
Sbjct: 181 PNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E+ S + + M + F++ + IPL + MTLIA ++
Sbjct: 241 QVDERRRKLSALPLTELMKVEGPEAVAE-------FHWRLAIPLAIPIMTLIAVPLARVN 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ + + ++ + + G++ + + + IL+L
Sbjct: 294 VRQGKFAKMLP-AVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLL 349
>gi|320352233|ref|YP_004193572.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
gi|320120735|gb|ADW16281.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
Length = 360
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/360 (14%), Positives = 133/360 (36%), Gaps = 7/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY ++L+ + + L +ID E + E S S A +P II
Sbjct: 3 LLYRYILAHFLRNLGMIMASFITLYLLIDFFEKIDNFLEK-GKSFSLIATFFFANIPFII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ +V LN ++EL+ +A GI + ++ P + ++ + + + +
Sbjct: 62 DLMSPVCILLAGVVTLGVLNHSNELIALKACGIPLKKITVPIIGAALACTLLFLAMDQYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + Q+ F + P+ +++++F+
Sbjct: 122 LPKTIAVTNQIWNKEIKGKVPLGIYRN--GRYYYRGQEGFYSFSRPDPQKNLFKNFSYTV 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQK 239
DK++ A++A+ L+ + + +N P D F
Sbjct: 180 WDKEHAANTLIAAEIAVWNKGVWTLRNGQIQKAAGGDRFATQVFTNRRINFPETPDDFFV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S ++ K+ + A+ + + + + + + +
Sbjct: 240 PAYRSMELSLVQLYKETQHTRSEEERSKAWADFYGRISYTLLGLPLLLLGLPLLLLVYRK 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + F+ + + T ++S K+ + P+AAA+ +L + +LL+++
Sbjct: 300 WGRDLSLAIPVSCGMAFLCWGVYTTLQSLAKASYIPPLAAAISVHLLVGCVGFFLLLRED 359
>gi|115352568|ref|YP_774407.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
gi|172061427|ref|YP_001809079.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
gi|115282556|gb|ABI88073.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
gi|171993944|gb|ACB64863.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
Length = 382
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 115/378 (30%), Gaps = 26/378 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + I L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R L V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSLINLFRYIQHLRE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 359 LTAATPGLIYLALGLFAL 376
>gi|315223961|ref|ZP_07865805.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
gi|314946065|gb|EFS98070.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
Length = 358
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 123/357 (34%), Gaps = 3/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T ++ + + ++DL+E ++M + ++ + +
Sbjct: 1 MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQK-GAPMNEILWYYLSFIVY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 60 FANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + N + + + +
Sbjct: 120 FIVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHFD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K + + + ++ K D
Sbjct: 180 GIKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPME 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ +E+ K + + Y +TLI +VS R
Sbjct: 240 YTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSSVKKR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILILLQ 357
I + G+ GF + + + SG L P+ A L+P ++ ++L+IL+L +
Sbjct: 299 GGMGINLMVGVVVGFSFVFFDRVFGTLAQSSGGLSPLMAVLLPNLIFLTLAILLLRK 355
>gi|281180020|dbj|BAI56350.1| conserved hypothetical protein [Escherichia coli SE15]
gi|330909040|gb|EGH37554.1| permease Ygh-P2, YjgP/YjgQ family [Escherichia coli AA86]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 120 WGASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|323496138|ref|ZP_08101198.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
gi|323318882|gb|EGA71833.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
Length = 366
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 114/353 (32%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L +++ ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLLLVFISQTFIKVLGDATD-GDIPARLILAIVGLNIPQMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + + + +
Sbjct: 61 LLMLPMSLYLGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTALAAFNTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ LI+Q + + + +FI + K N+++
Sbjct: 121 APWSQEREAQLIEQVAAESSVDLLKAGQFQRTPDGSSVVFIDSIKDNQLNNVFVAQLRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ ++ + + + Y+ +D T + G ++
Sbjct: 181 DAILPSVMFSNSGEVKEHSDGRQMIVMHDGTRYEGIPTRLDYMVTEFEQYSGLIGQREVE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + S+ S + + + I + + + +T++ +S R
Sbjct: 241 AKRRGWGAVPTLDLIESSDLSA-------KAELQWRISLFVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + F+ + I+ KS + G + + +I +
Sbjct: 294 GRFAK-MGPAILAYFVYFISISTTKSAIEDGNIPAAIGMWPINFALLVAAITV 345
>gi|323173776|gb|EFZ59405.1| hypothetical protein ECLT68_2094 [Escherichia coli LT-68]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ + S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G +L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFVLSAPVTALGLPIAFVLVALSLVYW 354
>gi|293412357|ref|ZP_06655080.1| predicted protein [Escherichia coli B354]
gi|291469128|gb|EFF11619.1| predicted protein [Escherichia coli B354]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIFARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ +G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIAGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|283833699|ref|ZP_06353440.1| putative permease [Citrobacter youngae ATCC 29220]
gi|291071385|gb|EFE09494.1| putative permease [Citrobacter youngae ATCC 29220]
Length = 360
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 113/359 (31%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY +Y + L +L + + Y + ++ +P
Sbjct: 1 MNIFSRYLIRYVFIGFAAAAGILLPLFTTFNLINELDDVS-PGGYRWPQAVIVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + PFI L+ I +L++T EL R+ G+SI+++ + +++ +
Sbjct: 60 NLIDLSPFIALLGGIAGLGHLSKTMELTAIRSTGLSIFKIAMITLTAGVMIIALLAVTDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA ++ + + + I K + +N
Sbjct: 120 WIAAPLQQHALRIRTTAMAQDPNADHQKNNMLWARRGDAFATI--KSLDAKNQPVGIEIF 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ N L+ V +
Sbjct: 178 HYRPDLSLETYIYAEKGRVLKNGTWTLEGVYEKRWLDGRETTEVHKQQQWKSIFTRINLE 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S S ++ +S+ + + + PL+ +AM L+A +
Sbjct: 238 MLTMPAGSFSIKQLRSYISYLQDTGQPSI-EFRVALWQKLGRPLLTLAMMLLAIPFTFSI 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS +A G+ G + Y I+ + G L L P + + ++++++ +
Sbjct: 297 PRSPGIGSRLAMGVIVGLLTYISDQIIVNIGILFDLQVQLTVLCPPVALLIIALILVSR 355
>gi|218701754|ref|YP_002409383.1| hypothetical protein ECIAI39_3474 [Escherichia coli IAI39]
gi|227887686|ref|ZP_04005491.1| inner membrane protein [Escherichia coli 83972]
gi|301019929|ref|ZP_07184064.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|218371740|emb|CAR19591.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI39]
gi|227835082|gb|EEJ45548.1| inner membrane protein [Escherichia coli 83972]
gi|299882027|gb|EFI90238.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|307555074|gb|ADN47849.1| putative permease [Escherichia coli ABU 83972]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ ++ S
Sbjct: 180 DDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|215488305|ref|YP_002330736.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
gi|215266377|emb|CAS10814.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PRMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|222034702|emb|CAP77444.1| hypothetical protein LF82_487 [Escherichia coli LF82]
gi|312947540|gb|ADR28367.1| hypothetical protein NRG857_14785 [Escherichia coli O83:H1 str. NRG
857C]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|121730751|ref|ZP_01682851.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|121627676|gb|EAX60335.1| conserved hypothetical protein [Vibrio cholerae V52]
Length = 289
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/290 (15%), Positives = 95/290 (32%), Gaps = 2/290 (0%)
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ ++ L +SELV+ +A G S + + +I L I L+ A +
Sbjct: 1 MAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQ 60
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
K+ D+ G W + +N I + L ++W + +
Sbjct: 61 KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENKKLSTVI 120
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
L ++V + D + + S
Sbjct: 121 FSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVVTVKPEELS 179
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + ++ + R E + + P+ + M L+A S RS +
Sbjct: 180 LTGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARI 238
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 239 LSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 288
>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDV-NPGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S ++ +++ ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNSFSVRQLNHYINYLQETGQPSS-EYRLALWEKLGHPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G + + IM + G L AAL + + +++++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVY 353
>gi|256820810|ref|YP_003142089.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
gi|256582393|gb|ACU93528.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
Length = 358
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 124/357 (34%), Gaps = 3/357 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K YL T ++ + + ++DL+E ++M + ++ + +
Sbjct: 1 MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQK-GAPMNEILWYYLSFIVY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 60 FANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + N + + + + +
Sbjct: 120 FIVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHFN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K + + + ++ K D
Sbjct: 180 GIKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPME 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ +E+ K + + Y +TLI +VS R
Sbjct: 240 YTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSSVKKR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILILLQ 357
I + G+ GF + + + SG L P+ A L+P ++ ++L+IL+L +
Sbjct: 299 GGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVLLPNLIFLTLAILLLRK 355
>gi|72382010|ref|YP_291365.1| putative permease [Prochlorococcus marinus str. NATL2A]
gi|72001860|gb|AAZ57662.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. NATL2A]
Length = 395
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/367 (13%), Positives = 107/367 (29%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L + + ++ + + + S + ++P +
Sbjct: 24 LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFV 83
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + +LN SE+ ++IGIS+++L+ P ++ SI + T + N I
Sbjct: 84 VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRLILPGLILSIFMSYMTFIFNNNI 143
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI----------SNPQQDIFIGAKKILPEN 173
S K ++ + + +
Sbjct: 144 VPSTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFIDG 203
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLN 229
+ + + + + + + + S
Sbjct: 204 QMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRTKFLSFLYP 263
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ + + + E M S R + + I +P+
Sbjct: 264 LGTELTNIAQLPKDANDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKITLPIACSVFA 323
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI S + R I + Y + S G GI+ P AA PV L++
Sbjct: 324 LIGCSFGVMQKRGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSPVFLSM 383
Query: 349 SLSILIL 355
+L
Sbjct: 384 LGGGFLL 390
>gi|170681358|ref|YP_001745244.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
gi|170519076|gb|ACB17254.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y + ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTLAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ ++ S
Sbjct: 180 DDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPS-SEYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGVGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
Length = 359
Score = 104 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S ++ +++ ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNSFSVRQLNHYINYLQETGQPSS-EYRLALWEKLGHPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G + + IM + G L AAL + + +++++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVY 353
>gi|157155522|ref|YP_001464443.1| YjgP/YjgQ permease [Escherichia coli E24377A]
gi|193067447|ref|ZP_03048415.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|260869741|ref|YP_003236143.1| hypothetical protein ECO111_3808 [Escherichia coli O111:H- str.
11128]
gi|157077552|gb|ABV17260.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
gi|192959404|gb|EDV89839.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|257766097|dbj|BAI37592.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
11128]
gi|323178688|gb|EFZ64264.1| hypothetical protein ECOK1180_2420 [Escherichia coli 1180]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFTAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|307139669|ref|ZP_07499025.1| hypothetical protein EcolH7_16278 [Escherichia coli H736]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PF+ L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 60 TLVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|257126590|ref|YP_003164704.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
gi|257050529|gb|ACV39713.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
Length = 358
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 122/357 (34%), Gaps = 6/357 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y Y+K+ + ++ ++ + + + + + S +P
Sbjct: 1 MNK-LDKYIIVNYVKSFILGMMMFFLIFLLAESITLTGWLMD-GKLKGSEALKYLRYGIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ + + E+ + GIS ++ ++ S L+ + +
Sbjct: 59 EIVTNTAPLGVLLGSLLCISKMAKQLEVAAMKTSGISFARVALFPILFSALVSLGVFWLN 118
Query: 121 NPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL + + + +++I A K +
Sbjct: 119 YDYLGRANTKKEDLKTLKIDNKEPVRSEKDFVFVKIDKRTVLFSGHANKNNGTMNYVTIL 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQ 238
K + ++ ++ K + EY ++ M+
Sbjct: 179 KFENGFKVIRKMYTASFAKINPKTNEWTFKDLKEYDSKTNVTKPFDTKKFKFVASMEDVL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + E+ +K + + +FY+ I L + M+LI S+ +
Sbjct: 239 ASAVKAKNLTMPELREKTVYFTRVGADSLN-LRIEFYYRISFALSSLVMSLIGLSLGSRY 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + G+ Y + TI++S SG + A +P+I+ + + I +
Sbjct: 298 VR-GGAAVNIGLSVIIGYAYYGVSTILRSMAVSGTVPIYVACFVPLIIFLVVGIKLF 353
>gi|323978946|gb|EGB74026.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSLVYW 354
>gi|296115280|ref|ZP_06833920.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295978183|gb|EFG84921.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 372
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 129/359 (35%), Gaps = 2/359 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L Y + L + L+ V+ L E ++ + +S A R+PL+
Sbjct: 14 GVLVGYLTRELLSKIFITAAVIIALMEVLALLEEVTEIMSR-HLGLSGVLYYAVIRLPLL 72
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+P L+ ++ L ++E+ I RA G+S L F+ + LG+ V+V +
Sbjct: 73 FGNAMPLAVLIGALITLVQLTSSNEISIMRAAGLSTAGLFRLFLPAVLGLGVLCVVVDDQ 132
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A E + D+ ++ + L + ++
Sbjct: 133 VAPRSEIAQARWWNSTAPAPNGVTRDVWFRTGMTLVNIGGVAHGGRELHDVTVYRRDDEG 192
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQKFS 241
+ K + + L + + + + ++ TL+ P +
Sbjct: 193 ALQKVIHLPTVRYFINRWSGVPDHALTVLSPTRVEDVALQDDTRLTLDWPRALTPDVLLQ 252
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + ++ + + T+ I++PL M L+A V R+
Sbjct: 253 MSENTPLSIMTMVRVLHNAFPSSQSPAFFMTEILGRIMLPLTFTVMLLLAIPVVYIPPRA 312
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + +G + ++++ G +G L V A + +++ I + +LL+ E+
Sbjct: 313 GARSWLPVWCLGAGLVFVVFQGLLRALGNAGTLPSVVAVFVGIVIFILGVVTVLLRIEE 371
>gi|170018762|ref|YP_001723716.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|297517383|ref|ZP_06935769.1| hypothetical protein EcolOP_07055 [Escherichia coli OP50]
gi|300916914|ref|ZP_07133617.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300923636|ref|ZP_07139664.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
gi|300950817|ref|ZP_07164703.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300958360|ref|ZP_07170501.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
gi|312972760|ref|ZP_07786933.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|169753690|gb|ACA76389.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|242378535|emb|CAQ33321.1| ybl135 [Escherichia coli BL21(DE3)]
gi|284923006|emb|CBG36098.1| putative permease [Escherichia coli 042]
gi|300314944|gb|EFJ64728.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
gi|300415884|gb|EFJ99194.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300420077|gb|EFK03388.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
gi|300449912|gb|EFK13532.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|310332702|gb|EFP99915.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|323936016|gb|EGB32311.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
gi|323941919|gb|EGB38098.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
gi|332344938|gb|AEE58272.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYW 354
>gi|332704119|ref|ZP_08424207.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554268|gb|EGJ51312.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 396
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 115/358 (32%), Gaps = 12/358 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+ FK L T + L + L+ + + ++ + + L P +Q ++
Sbjct: 14 HVFKELLLTFIICLGSLLTLILIGRML-QLKELFLGQSLGVMEIGRLFFYLSPFFLQLLM 72
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ + F ++ EL+ +A G+S+++LL V+ L + + V + G
Sbjct: 73 PISCMLAIFLTFLRISSDRELIALKAGGVSLYKLLPSPVLFCCLCCVANLAVAFWGISWG 132
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ ++ N + + E + S +
Sbjct: 133 MDNFRAEVLEFARNRTQIMIQPGTFNSDFPGLTIFAEQYDPGNKEMRLIFVQDSRGDETS 192
Query: 188 NKIIHRKDADLAIIYNDKVKL----------KKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I+ K + +++ K + + N
Sbjct: 193 ATIVAEKGRVVTDKERGRLQFLLNDGAIYRTAKDQVHTLKFVSYLVNLDIWKTFNAEQLS 252
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + + K + + + + +P+ + + L A +
Sbjct: 253 ETRPREMSIMNLRRLAADPDLAKKRDEDYVRKVNVEIQKRYTLPVACLVLGLFALPFACS 312
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F + + V + + Y++ +I S G+SG L P +P ++ +I +
Sbjct: 313 FQ-GVKQYVGVLMALGMFIVYYSLYSISISLGESGFLAPWIGLWLPNVIFFVSAIFGI 369
>gi|260857119|ref|YP_003231010.1| putative inner membrane protein [Escherichia coli O26:H11 str.
11368]
gi|257755768|dbj|BAI27270.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
11368]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVVLVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFTAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|229588597|ref|YP_002870716.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
SBW25]
gi|229360463|emb|CAY47320.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens SBW25]
Length = 372
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/356 (11%), Positives = 112/356 (31%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + + + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G ++ + + + + + + + +
Sbjct: 121 APQGAMQFQLVLNKQDAMTEFDTLEPGRF--QALNDGSRVTYTETLTDDRANLGGVFISE 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
R + L + Y + + + + +
Sbjct: 179 KRLGQDKKDRGISVLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVM 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A + + ++F + R+ Q + + +PL++ +TL+A ++ R
Sbjct: 239 LARPDISDEVTDRDAIPTMDLFGSNELRSIAQLQWRLSLPLLVFIVTLMAVPLARVNPRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I T++ + G L P + +++ + +L
Sbjct: 299 GR-FLKLLPAILLYMAYLTMLISAHGAVEKGKLSPTLGLWWVHGIFLAIGLGLLYW 353
>gi|312795336|ref|YP_004028258.1| hypothetical protein RBRH_03152 [Burkholderia rhizoxinica HKI 454]
gi|312167111|emb|CBW74114.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
HKI 454]
Length = 382
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/382 (15%), Positives = 117/382 (30%), Gaps = 26/382 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY K T + L L F DL N +G NY S + + P
Sbjct: 1 MRLYERYLAKQVYLTFAFILFAFSGLFFFFDLISELNAVGH-GNYKFSYAVLRVMLQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + +SE I R G+S + L + + + + T ++
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLSTHRALGSLLKIGVPIVVLTFVIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ------DIFIGAKKILPENHI 175
I +++ + + + W++ + P F+ ++ P+ I
Sbjct: 120 IIGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTVPGNGATAQVTRFVNVGELKPDATI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---------------- 219
+ R + + LK V E Q +
Sbjct: 180 SNVRIYEFDSQFRLADVRTAQSGRYMRPGQWLLKGVTETQLHDVAPAAATAKDVLNPVYK 239
Query: 220 --PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ + + S + + + N R +
Sbjct: 240 SAQVSMPEYPMRSELTPQILSVLLVAPDRMSMTNLFSYVQHLRE-NHQDAQRYVIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P ++ M +++ + +R+ + V GI G T+ G
Sbjct: 299 VLYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A P ++ ++L + L +
Sbjct: 359 LTAATPGLIYLALGLFALRWAD 380
>gi|191169423|ref|ZP_03031162.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|309794090|ref|ZP_07688515.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|190900537|gb|EDV60347.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|308122497|gb|EFO59759.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 359
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 2/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S S ++ +++ ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNSFSVRQLNHYINYLQETGQPSS-EYRLALWEKLGHPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+A G+ G + + IM + G L AAL + + +++++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVY 353
>gi|77919518|ref|YP_357333.1| hypothetical protein Pcar_1922 [Pelobacter carbinolicus DSM 2380]
gi|77545601|gb|ABA89163.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
DSM 2380]
Length = 418
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 116/361 (32%), Gaps = 13/361 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L L L +++ + + + + + +L A +P +
Sbjct: 33 IQRYLLRETLVPMLLGLAVFTLVLLLGRILNLVELVINK-GVPLVDVLLLLAYLLPTFLV 91
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ + F ++ E++ +A G+ + QL P V +L+ + T I
Sbjct: 92 LTLPLSFLLGVMAGFGRMSADREILALKACGVGLRQLTAPIVGLGLLVSLATAATTIAIK 151
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSI 182
+ E + + + + + + D
Sbjct: 152 PASEDLFREKLFHIASSRANIGIQAQIFNDEFEGIILYANDVDERSGRMQGVFISDERDD 211
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ--------YGRIPIDKNSTTLNIPIKM 234
T+ + + L+ ++ + I + L++
Sbjct: 212 TLSSIILANEGRIFSNQENLTLTLHLENGTIHRQRRETGSGFQVIEFTRYDLNLDLGQTS 271
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + E+ + + + +F++ + +P++ + L+ +
Sbjct: 272 MSADQPRKNKKTMTLGELYQAIRPDAATPPSKKRELLAEFHWRLAVPVIPLLFALLGVPL 331
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS + A G+ Y ++++ + L + P + + SI++
Sbjct: 332 GIQPVRSGR-GSGFAAGLLVFLAYYVLLSLAGTLVVDAGLPGLI-MWGPNSIFLLASIVV 389
Query: 355 L 355
L
Sbjct: 390 L 390
>gi|301325677|ref|ZP_07219138.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|300847532|gb|EFK75292.1| conserved hypothetical protein [Escherichia coli MS 78-1]
Length = 359
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L + SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLAKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSLVYW 354
>gi|187734829|ref|YP_001876941.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187424881|gb|ACD04160.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 363
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 4/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L T ++ L+ + +L + + IS +P
Sbjct: 1 MKILDRYIARQLLGVTALGVMALSALLLLGNLFKELRPLLVENKAPISIVLEFIFQVIPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP+ L ++V+ L +EL R G+S+W+L P + I L +
Sbjct: 61 SLMFSIPWGFLTAVLLVYGRLASDNELTSMRMSGMSLWRLSAPAIAIGIALSGLCYWINI 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-QQDIFIGAKKILPENHIWEDFT 180
IA ++ +L+ + K + + + + I ++ HI++
Sbjct: 121 DIAPRAKQSISELLIKAASINPKGLLNEGQAITKFDNLEIYIDKRVDDVIHGMHIYQKAD 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST--TLNIPIKMDGFQ 238
+ + L + I ++ T + + I +D +
Sbjct: 181 DKSPSVAMHSERVTMDFSPEKKILTLHLINPLITTQEEGSISQSVTMDEMPLSINLDKSR 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + EI + + + T+ L + LI +++
Sbjct: 241 SRRIKANRFTNREIREALDTPGYLDKKQTTEFATELPRRASFSLACIVFALIGVPLAIN- 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R A GI + + + K+ +LP +P I+T+++++ +
Sbjct: 300 TRRKDTSTGFALGILIASLYFLALIFADLSRKNDTMLPYILLWLPNIITVAVALHL 355
>gi|300931863|ref|ZP_07147160.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|331664593|ref|ZP_08365499.1| putative permease [Escherichia coli TA143]
gi|300460286|gb|EFK23779.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|331058524|gb|EGI30505.1| putative permease [Escherichia coli TA143]
Length = 359
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ ++ S
Sbjct: 180 DDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|320195129|gb|EFW69758.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli WV_060327]
Length = 359
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|306816678|ref|ZP_07450810.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
gi|331659261|ref|ZP_08360203.1| putative permease [Escherichia coli TA206]
gi|305850243|gb|EFM50702.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
gi|315297644|gb|EFU56921.1| conserved hypothetical protein [Escherichia coli MS 16-3]
gi|331053843|gb|EGI25872.1| putative permease [Escherichia coli TA206]
Length = 359
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|84387840|ref|ZP_00990855.1| putative permease [Vibrio splendidus 12B01]
gi|84377355|gb|EAP94223.1| putative permease [Vibrio splendidus 12B01]
Length = 366
Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 109/352 (30%), Gaps = 11/352 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++ + + +FI +++
Sbjct: 121 SPWSQDKVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDIDGNKLENVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ K D+ + + + + ++ +D T + G ++
Sbjct: 181 DSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYEGLIGQREVE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ ++ + S + + + I + L + +T++ +S R
Sbjct: 241 KKGRDWEAIPTLELIGNPENSA-------KAELQWRISLVLCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + I + I+ KS + G + V L + ++I
Sbjct: 294 GRFAK-IGPAILIYLTYFLAISATKSSIEEGSIPAVVGMWPINALLLFVAIG 344
>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 124/361 (34%), Gaps = 8/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + L G + + ++D E + + ++PL
Sbjct: 1 MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDNFLD-AGLGTGGAVRYLLLKIPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + + +
Sbjct: 60 IIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L Q ++ I +I Q+ + + DF+
Sbjct: 120 WLLPPTMSELNRLWHQEVRQ--QENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSY 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-----EYQYGRIPIDKNSTTLNIPIKMDG 236
+T D+ ++ A A K L++ + L +P +
Sbjct: 178 LTWDRDYRLAQLIFAARATWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPAD 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + R+ + + + S + R Q + + + + I +++
Sbjct: 238 FFIPPYALSERALSTLFSQATASADTPQRRQARLAIQHKISYIFLGLPLLLIGIPLLLAM 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + F F+ + + + +S +G L P AA +L ++
Sbjct: 298 SRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFVAAWALHLLAAGGGWYLIK 357
Query: 357 Q 357
+
Sbjct: 358 R 358
>gi|323188591|gb|EFZ73876.1| hypothetical protein ECRN5871_3010 [Escherichia coli RN587/1]
Length = 359
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLEQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|194436708|ref|ZP_03068808.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|256024435|ref|ZP_05438300.1| hypothetical protein E4_13754 [Escherichia sp. 4_1_40B]
gi|194424190|gb|EDX40177.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
Length = 359
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ ++ S
Sbjct: 180 DDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYW 354
>gi|28899417|ref|NP_799022.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|153839665|ref|ZP_01992332.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
gi|260879348|ref|ZP_05891703.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|260895693|ref|ZP_05904189.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|260900265|ref|ZP_05908660.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|28807653|dbj|BAC60906.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|149746808|gb|EDM57796.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
gi|308087429|gb|EFO37124.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|308093070|gb|EFO42765.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107549|gb|EFO45089.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|328471446|gb|EGF42341.1| putative permease [Vibrio parahaemolyticus 10329]
Length = 366
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/349 (10%), Positives = 103/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + + +FI K ++++
Sbjct: 121 SPWSQDRVEHLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSVLPSVMFSSSGEVKELSDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 QKGRDWEAYPT-----ADLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + + + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAI 343
>gi|254229296|ref|ZP_04922714.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262393202|ref|YP_003285056.1| hypothetical protein VEA_002429 [Vibrio sp. Ex25]
gi|151938220|gb|EDN57060.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262336796|gb|ACY50591.1| putative membrane protein [Vibrio sp. Ex25]
Length = 366
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/349 (10%), Positives = 103/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + + +FI K ++++
Sbjct: 121 SPWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSVLPSVMFSSSGEVKELSDGRQVITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 KKGRDWEAYPTV-----DLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + + + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEDGDIPAAIGMWPINAMLLIVAI 343
>gi|323966510|gb|EGB61943.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
gi|327251763|gb|EGE63449.1| hypothetical protein ECSTEC7V_3615 [Escherichia coli STEC_7v]
Length = 359
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGTIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRFALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + ++ IM + G L AL I + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWSSYQIMVNLGLLFALSAPVTALGLPIAFMLVALSLVYW 354
>gi|301643655|ref|ZP_07243696.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|301078039|gb|EFK92845.1| conserved hypothetical protein [Escherichia coli MS 146-1]
Length = 349
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 113/351 (32%), Gaps = 2/351 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPS-SEYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+A G+ G + + IM + G L AL I + +++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVAL 349
>gi|103487657|ref|YP_617218.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
gi|98977734|gb|ABF53885.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
Length = 402
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 128/364 (35%), Gaps = 13/364 (3%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M + + RY + + L+ + +L+ + + + + + +S + A
Sbjct: 1 MNKLPAIDRYIARLIFFPMVGTLVLSAMLLVLEKMLRLFDFVATEGG-PVSVVWRMLANL 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + IP ++ ++ F L +SEL + + +G+S +L+ V ++ L +
Sbjct: 60 IPEYLSLGIPIGLMLGILLAFRRLATSSELDVLKGVGMSFGRLMRMPYVYAVGLAALNLA 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-------ISNPQQDIFIGAKKILP 171
++ I L + + + + + + + I
Sbjct: 120 IVGFIQPYARYAYEGLQFELRSGALGASIKVGEFTRLGERMTLRIEESYNEGRSLRGIFV 179
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + + + D + I+ + L + ++ L IP
Sbjct: 180 RGEQRDGQRVSATASRGQFLATDDPETIILRLSQGVLIHESPKFAVPRVLTFDNHDLPIP 239
Query: 232 -IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+++ F+ + E+ + + + F+F IV + + + LI
Sbjct: 240 LPRIEAFRLRGGADREMTIPELFVAGKD-RRQSEQTRLESRANFHFRIVEVMSMFLIPLI 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++++ RS + V I + I + G G + P+ A +P +L +L
Sbjct: 299 AVALAVPPKRSTS-SLGVFLSIVLLVTQHKINQYAEDLGARGAVDPLIALWVPFLLFAAL 357
Query: 351 SILI 354
+I +
Sbjct: 358 AIWM 361
>gi|91228859|ref|ZP_01262764.1| putative permease [Vibrio alginolyticus 12G01]
gi|269966356|ref|ZP_06180442.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|91187597|gb|EAS73924.1| putative permease [Vibrio alginolyticus 12G01]
gi|269829033|gb|EEZ83281.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 366
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/349 (10%), Positives = 103/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + + +FI K ++++
Sbjct: 121 SPWSQDRVEQLYEQVASENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSVLPSVMFSSSGEVKELSDGRQIITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 KKGRDWEAYPTV-----DLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + + + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEDGDIPAAIGMWPINAMLLIVAI 343
>gi|163803712|ref|ZP_02197572.1| putative permease [Vibrio sp. AND4]
gi|159172495|gb|EDP57360.1| putative permease [Vibrio sp. AND4]
Length = 366
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/350 (10%), Positives = 105/350 (30%), Gaps = 7/350 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L Q + + + +FI K ++++
Sbjct: 121 SPWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSVLPSVMFSSSGEVKELSDGRQVITMHDGSRYEGVPTRVEYMVTKFDQYEGVIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 QKGRDWEAYPTL-----DLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ I + I+ KS + G + + + ++IL
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEEGTIPAAIGMWPINAMLLIVAIL 344
>gi|224368911|ref|YP_002603073.1| predicted permease family protein [Desulfobacterium autotrophicum
HRM2]
gi|223691628|gb|ACN14911.1| predicted permease family protein [Desulfobacterium autotrophicum
HRM2]
Length = 391
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/367 (14%), Positives = 125/367 (34%), Gaps = 13/367 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY F+ + + + + + EI N + N I +L A +P
Sbjct: 1 MMTTINRYIFRELIPPFAISAVFLTSIFIMTRIPEITNMVVNY-NTGIFSVLLLIACTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ IP ++ ++ F ++ +E++ + GI+I++LL P ++ +L T+ +
Sbjct: 60 RFMEFTIPMSVMISVLLTFMRMSGDNEIIALKGGGITIYRLLPPVLIFCLLGTAVTLWIT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L + + +
Sbjct: 120 IIGVPLGNMSFKTLGIAMARSNLNVALSDGTFNSSFKDVMIYISSMDVKTKKLRDLFIED 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK---------KVVEYQYGRIPIDKNSTTLNIP 231
T D+ + + + L+ + + D L+
Sbjct: 180 RRTKDRVTISVAPEGVLVKDAVTGSYALRLYGGSVNQVDLKSRSINNVGFDTYDINLDFA 239
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++ F + E+ + S A +F+ IP+ +AM ++A
Sbjct: 240 QVQKSSKVGNKDFDEMTLNELRAFLK--KTSEKPELNAALMEFHEKFSIPIACIAMGILA 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ L+ + S++ G+F + Y ++ S G++G+ P+ +P I+ +
Sbjct: 298 MALGLQAA-SSRKTAGFGLGMFFFLLYYLLLAAGWSAGENGLYPPLIGMWMPDIVMGGIG 356
Query: 352 ILILLQK 358
+L +
Sbjct: 357 SFLLYRI 363
>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 124/361 (34%), Gaps = 8/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + L G + + ++D E + + ++PL
Sbjct: 1 MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDSFLD-AGLGTGGAVRYLLLKIPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + + +
Sbjct: 60 IIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L Q ++ I +I Q+ + + DF+
Sbjct: 120 WLLPPTMSELNRLWHQEVRQ--QENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSY 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-----EYQYGRIPIDKNSTTLNIPIKMDG 236
+T D+ ++ A A K L++ + L +P +
Sbjct: 178 LTWDRDYRLAQLIFATRASWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPAD 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + R+ + + + S + R Q + + + + I +++
Sbjct: 238 FFIPPYALSERALSTLFSQATASADTPQRRQARLAIQHKISYIFLGLPLLLIGIPLLLAM 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + F F+ + + + +S +G L P AA +L ++
Sbjct: 298 SRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFIAAWALHLLAAGGGWYLIK 357
Query: 357 Q 357
+
Sbjct: 358 R 358
>gi|305664654|ref|YP_003860941.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
gi|88707355|gb|EAQ99601.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
Length = 341
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/338 (14%), Positives = 116/338 (34%), Gaps = 4/338 (1%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + + +L E +M + + + + I + P + I
Sbjct: 1 MLLLFIPIGIMANLAEQIGKMID-NDAPTNEIIIYYVNFTIYIGSLLFPIFLFLSIIFFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+++G+ ++ + +++ I + + ++
Sbjct: 60 SKLASNTEIVAILSSGVSYNRFLRPYLIGASIVALIMLVMAMFIVPNASIGYNEFKFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
G + + + Q++ + + + + I
Sbjct: 120 KKGKQDRVTSNIFNQLNESDFIYVKSFDPARQNANQFTFERFNEDNTLDFKISANSIRWI 179
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ K G I + L+ K+D S +++ +E+ + +
Sbjct: 180 EKDSTYRLTKYKKRKMVGDSAIIETKNRLDTLFTFKIDDLTPVSYIAETKNLFELNRFIE 239
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + Y +PL +T+IA +VS R I +A+GI F+
Sbjct: 240 NQRRKGASNINNYVLVKYRRWALPLTAFILTIIAVAVS-SVKRRGGMGINLAFGIGVAFI 298
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + P+ A +IP ++ L+ +L
Sbjct: 299 YIFFDKVFGTLAEQAGFSPLLAVIIPNVVFGVLAFYLL 336
>gi|54295469|ref|YP_127884.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
gi|53755301|emb|CAH16795.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
Length = 359
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 113/354 (31%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + AD A + ++ + Q G+ + ++
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + H+ + + + I IPLM++ +TL+A +S RS +
Sbjct: 241 PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + + + +G + + L IL + +
Sbjct: 301 YSK-LLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWR 353
>gi|332753041|gb|EGJ83425.1| hypothetical protein SF434370_3220 [Shigella flexneri 4343-70]
gi|332998924|gb|EGK18515.1| hypothetical protein SFVA6_3889 [Shigella flexneri VA-6]
gi|333000167|gb|EGK19750.1| hypothetical protein SFK218_4002 [Shigella flexneri K-218]
Length = 359
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|242279363|ref|YP_002991492.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
gi|242122257|gb|ACS79953.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
Length = 376
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+PG L Y K + L + + DL + + E + ++P
Sbjct: 6 LPGYLASYVLKQNIFLMCVCLGVGTGIYLLSDLFDRLDDFIE-AGLGMGTILKYFLVKMP 64
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI QI+P + L+ IV + R+ EL+ R G+S+ L FV+ +++ +L
Sbjct: 65 LIFSQILPAVFLISMIVQLCVMARSKELLALRTGGLSLIWFLRFFVIYAVIWSFGQLLFS 124
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I GE+ + ++ D I + + AK+++P + +D T
Sbjct: 125 QVIGVYGEQEAYRIWKEDVRK---SMLDKRVLKNIWLKEGRFVVEAKEVMPFGNRAKDIT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ N I R + + K K ++ ++ + + + + +
Sbjct: 182 VYEFAEGNGGIKRVITSESAEVSSKYGWKLENAVELSPDKFASQKHPIFTMPIKLNLNVF 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
A +++ + + S R T ++ L+ M L++ ++
Sbjct: 242 KVVDPDIDPAQLPLWQLDQVIEQLKLSGS-SVDRLITAWHSKWAYAFSLLTMALVSLALV 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + G+ F Y + + S G +G L P+ AA + IL SL++
Sbjct: 301 TITE---NIYLNIGLGLAIIFTYYALFMVGASAGDTGALPPIVAAWLGNILVSSLALG 355
>gi|254786690|ref|YP_003074119.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
gi|237683657|gb|ACR10921.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
Length = 378
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/365 (10%), Positives = 114/365 (31%), Gaps = 16/365 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L + L ++++ + L A R+P +
Sbjct: 2 IIFRYLAREVLSSMFAVSLVLLMIIISARFVNYLAEAA-AGKLDAGVLLTLMAYRLPAYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + L SE+ + A G+S +L+ + S+++ + L +
Sbjct: 61 ELILPLGLFIGILMAYGRLYLDSEMTVLSACGLSQKRLVGYTLAASLVVAMLVGLFSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G K L+ + ++ D + + + A+ I +
Sbjct: 121 GPQGVKASEALLAEQRNRTDFETLKPSRFHTLDQGAGTS--YAESISEDKKQLRGVFMAK 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + +
Sbjct: 179 VSPIDPADDLDKVTHQEADLTVLTAESGETVIDPQSGQKYLLLKNGRRYVGTPGTQNYQV 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF------------HNYRAETQFYFLIVIPLMLVAMTLIA 291
+F +++ + ++ K F A + +P++++ + L+A
Sbjct: 239 VEFGNFSQLLPEPDYAVKPKRFTDGLTTFKLLQAKTREASAALQWRFSMPVLVMIVGLLA 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S R + ++ I + + + + G + +L +++
Sbjct: 299 VPLSKTQPRQGRYAKMLP-AIILYMVYLVCVNAARGLIEKGNEPVPGMLWLVHLLFFTVA 357
Query: 352 ILILL 356
+ +L+
Sbjct: 358 LFLLV 362
>gi|297569343|ref|YP_003690687.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925258|gb|ADH86068.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 398
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 120/347 (34%), Gaps = 7/347 (2%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + A + P ++ +P
Sbjct: 15 EMLAPFFAALLVINAILFLGRLIPLLDEIFAL-GLGLGDFARICLYMSPRLLLFSLPMAC 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT----SG 127
++ I+ F +N E++ +A GI ++++L P ++ + + T++ + +
Sbjct: 74 MMGVIIAFTRMNGDYEIMALKASGIGLYRMLPPVLLLGAVTALLTLVTATVLIPKSTIAT 133
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++ L + + G + + Q+ +++ D
Sbjct: 134 NQLFWHLAKTKVEQGVRPNTFSEGLPQVVLYVEEVTPDNAWRGVYLSDLRDPDHPVTVMA 193
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ D + I Q I L IP+
Sbjct: 194 PDGQLQADTAGSRIMLTLHDGTMHRAVQEKTQTIHFGRYHLEIPLTPPAAFADRTGRHGM 253
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ E+ + + + + +++ +V+P + ++ +++L SR+ +
Sbjct: 254 TQDELRQTAAKLGPEHSRYKT-YLIEYHQRLVLPAGAFILAMLGITLTL-LSRTPHQALG 311
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V G+ S Y ++T K+ + G L A +P ++ ++ +
Sbjct: 312 VPLGLLSFIAYYVLLTAAKTLAEGGQLPLGPAMWLPNLVFAIFTVYL 358
>gi|24114287|ref|NP_708797.1| hypothetical protein SF3026 [Shigella flexneri 2a str. 301]
gi|30064334|ref|NP_838505.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
gi|24053443|gb|AAN44504.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042591|gb|AAP18315.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
gi|281602370|gb|ADA75354.1| putative permease, YjgP/YjgQ family [Shigella flexneri 2002017]
gi|313648097|gb|EFS12543.1| hypothetical protein SF2457T_3697 [Shigella flexneri 2a str. 2457T]
gi|332752655|gb|EGJ83040.1| hypothetical protein SFK671_3613 [Shigella flexneri K-671]
gi|332754439|gb|EGJ84805.1| hypothetical protein SF274771_3586 [Shigella flexneri 2747-71]
gi|332765461|gb|EGJ95679.1| hypothetical protein SF293071_3543 [Shigella flexneri 2930-71]
gi|333014735|gb|EGK34080.1| hypothetical protein SFK304_3819 [Shigella flexneri K-304]
Length = 359
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYHLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|149186433|ref|ZP_01864746.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830022|gb|EDL48460.1| predicted permease [Erythrobacter sp. SD-21]
Length = 409
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 125/360 (34%), Gaps = 9/360 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + + + + A L+ + + + + + + + AT +P
Sbjct: 8 IDRYIARLVIVPMVGVFVLAASLLVLDKMLRLLDFVAVEGG-PVGVVFKMLATLLPEYAS 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ ++ F L TSEL + RA+G+S +LL + + +L V ++ I
Sbjct: 67 LAIPLGLLLGILLAFRKLATTSELDVFRAVGMSYGRLLRVPFLITGVLMTLNVALVFFIQ 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +++ ++ + +
Sbjct: 127 PVSRFTYERLEYELRSGALGASIKVGEFTTLADRMALRIEESEDDGRQLKGIFARVANDK 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MDGFQK 239
+ I ++ LA + + ++ E + + L + ++
Sbjct: 187 GQVLSISAKEGNFLATTDDPDTIILRLTEGTIVQDTGSQTPRVLTFTRHDLPIDLPAIEE 246
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFYFLIVIPLMLVAMTLIAASVSLE 297
F + Y + + + N + R + F F +V +M+ M L+A ++ +
Sbjct: 247 FRARGEDEREYILPELLRIGWADNQTESKRDASQASFNFRLVEVVMMALMPLLAVALGIP 306
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + V I + + + G+ P+ A +P L +L + + +
Sbjct: 307 PKRSTS-ALGVFLSIIMVVAYHKVNQYGEDLAAIGMFDPILALWVPFFLFAALILWMYYR 365
>gi|260891450|ref|ZP_05902713.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
gi|260858833|gb|EEX73333.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
Length = 358
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 121/361 (33%), Gaps = 6/361 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y Y+K+ + ++ ++ + + + + + P
Sbjct: 1 MNK-LDKYIILNYVKSFILGMMMFFLIFLLAESISLTGWIMD-GKLKGHDAIRYLRYGTP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II P L+ +++ + + E+ + GIS ++ ++ S L+ + +
Sbjct: 59 EIITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFSFLVSMGVFWLN 118
Query: 121 NPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+L + + + +++I K E
Sbjct: 119 YDALGKSNTKKENLKSLKIDNKEPVKSEKKFIFVKIDKKTVLFSEHVNKNTGTMEHIEIL 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQ 238
K+ I+ ++ K + EY + ++ KM+
Sbjct: 179 KFEKGFKEISKIYTSPFGKINPKTNEWTFKDLKEYDDKTNLMKPADTKKFKFIAKMEDVL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +K+ + + +FY+ I L M LI S+ +
Sbjct: 239 ASPVKAKNLTMPELREKVVYFTRVGADSLNL-RIEFYYRISFALSSFVMCLIGLSLGSRY 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + G+ Y + TI++S SG + AA IP+I+ + + I +
Sbjct: 298 VR-GGAALNIGLSVIIGYAYYGVSTILRSMAVSGAVPIYAACFIPLIIFLIVGIKLFRDS 356
Query: 359 E 359
E
Sbjct: 357 E 357
>gi|104783411|ref|YP_609909.1| hypothetical protein PSEEN4442 [Pseudomonas entomophila L48]
gi|95112398|emb|CAK17125.1| conserved hypothetical protein; putative membrane protein
[Pseudomonas entomophila L48]
Length = 371
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 115/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLAMTLAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G +I Q + + + + + + +
Sbjct: 121 APLGVAQVQKIIAQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ R R + + + +PL++ +TL+A +S
Sbjct: 241 PKPEVAEEVTEREAIPTSDLFGN-------PGVRERAELQWRLSLPLLVFVVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I T++ ++ + G L L + + + ++
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPISLGIWWVHGLFLLIGLALM 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|37681090|ref|NP_935699.1| permease [Vibrio vulnificus YJ016]
gi|37199840|dbj|BAC95670.1| predicted permease [Vibrio vulnificus YJ016]
Length = 366
Score = 102 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/349 (10%), Positives = 104/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + + +FI K ++++
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + S +
Sbjct: 181 DSILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + A+ + + + + + + +T++ +S R +
Sbjct: 241 QRGRD----WDAIPTLELIGNPD-PEAQAELQWRVSLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + L + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|310822423|ref|YP_003954781.1| hypothetical protein STAUR_5182 [Stigmatella aurantiaca DW4/3-1]
gi|309395495|gb|ADO72954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 373
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 122/364 (33%), Gaps = 11/364 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L+RY + Y + + L + + V+D + L +
Sbjct: 1 MRGTLFRYVARLYARFAVGILAALLTVFLVVDFVDRSRAYTGEGWV--LAVLELYWNKAL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q + P L+ L + E+ RA+ L P ++ + +
Sbjct: 59 VTTQLLGPAALLLAAGAAVSTLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFD 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ Q + + P + F+ + + D
Sbjct: 119 ERVVAQASRRVDEITTQRFNRWGDWRLYYTPKQWFRRGEHVFFLRSGSAQEG---FRDVA 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVK-LKKVVEYQYGRIPIDK----NSTTLNIPIKMD 235
+T+ K+ R DAD + L VVE + ++ +
Sbjct: 176 ILTLTADFKLARRLDADTMVPLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPAR 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F + E+ +++S + + + E Y P+ + L+A ++
Sbjct: 236 SFLIRPGRPEQMRLPELREQISARTEVG-LDSRQYELALYNRFAYPMAGLPAALVAVGLA 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L +R + + G+ ++ +I + K+ + + P AA +P + + ++ ++
Sbjct: 295 LRPNRKGHLTVAIVEGLLIAMAMWGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLW 354
Query: 356 LQKE 359
L++E
Sbjct: 355 LRRE 358
>gi|148358635|ref|YP_001249842.1| permease [Legionella pneumophila str. Corby]
gi|296108275|ref|YP_003619976.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
gi|148280408|gb|ABQ54496.1| permease [Legionella pneumophila str. Corby]
gi|295650177|gb|ADG26024.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
Length = 359
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + AD A + ++ + Q G+ + ++
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + H+ + + + I IPLM++ +TL+A +S RS +
Sbjct: 241 PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + + + +G + + L IL + +
Sbjct: 301 YSK-LLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWR 353
>gi|149371725|ref|ZP_01891141.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
gi|149355352|gb|EDM43912.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
Length = 338
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/335 (13%), Positives = 107/335 (31%), Gaps = 2/335 (0%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
+L + + + L E +++ + + A+ + P + I
Sbjct: 1 MLLFIPIGITVHLAEKIDKILD-NEVPFNAVAIYFLEFTVYFANLLFPLFLFLSVIWFTS 59
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L +E++ + G+S ++ L PF++G+ ++ + + + +A + ++
Sbjct: 60 KLANNTEVIAFLSSGVSYYRFLRPFMIGATIIFVLGLGLTLYLAPLASTGYNEFTYKYLV 119
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
+ I N + +H + +R +
Sbjct: 120 RKKDRDKGNIFRQINDNDYIYVSYFNTLDNSGSHFTLEHFEEEKLVYKISANRIRYNEKD 179
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
KK I + S K++ + ++ ++ +
Sbjct: 180 STYTLQSYKKRTIGVNDDILESRASLDTTFSFKLEDLTPVKYIAETLNYSKLNSYIEQEK 239
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ + R + Y IP + +T+IA SVS R +A GI G +
Sbjct: 240 ERGSSYINRYVLEKYKRFSIPFSVFILTIIAVSVS-SVKRRGGMGANLAIGIGIGMIFVF 298
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + + P+ A P ++ L+I +L
Sbjct: 299 FDKIFGTLAQQSDFSPLVATWFPNVIFAILAIYLL 333
>gi|324005416|gb|EGB74635.1| hypothetical protein HMPREF9532_04926 [Escherichia coli MS 57-2]
Length = 359
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 113/356 (31%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G+ + + +
Sbjct: 120 WGASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + + + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQDTGQPSS-EYHLALWEKLGQPILTLAMILLAVPFTFSVPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|71064627|ref|YP_263354.1| hypothetical protein Psyc_0046 [Psychrobacter arcticus 273-4]
gi|71037612|gb|AAZ17920.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 402
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/385 (13%), Positives = 128/385 (33%), Gaps = 34/385 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY L + ++G L V + + + +Y++ R P
Sbjct: 22 KVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSLDD--SYTMGEAIKYIFYRSPYF 79
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++Q IP L+ ++ L SELV+ RA GIS++++++ + +++ + +++
Sbjct: 80 LEQFIPTGALLGAVIGLGLLANNSELVVMRAAGISVYRIVSWVLQPALIFVVLALIINQF 139
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---------IFIGAKKILPEN 173
+ ++ ++ K N S W + I
Sbjct: 140 VLPHSNQLANEI--NSKGNSSLVTSVRGYWTVQPRFENTKRGTTKPDGSDILYIDYADVK 197
Query: 174 HIWEDFTSITIDKKNKIIHRKD--------------------ADLAIIYNDKVKLKKVVE 213
+D + + K ++
Sbjct: 198 GNIGQVKRWHLDNNGSLQTAIHAEGGQYIGREPLDTVSSKPSEQYRYEWQLNNMTKLMIN 257
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+ + TL++P + + Q S ++ + F + E
Sbjct: 258 QGFESSQAISPTDTLSLPFAPESVYLLTHQAEDLSLTQLYEHRQFMRQQGQRSLS-HELA 316
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
F+ ++ PL ++++ ++A S R++ + + + G + + ++ +
Sbjct: 317 FWQKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFVSLATG 376
Query: 334 LLPVAAALIPVILTISLSILILLQK 358
P+ L+P+I + L +L ++
Sbjct: 377 FSPLLMVLLPIIASALLGEYLLKRQ 401
>gi|254242519|ref|ZP_04935841.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195897|gb|EAZ59960.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 372
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 114/356 (32%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + + + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDTLVPGRF--QAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + R + L + Y + + + +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVM 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + +++F N R + + + + PL++ +TL+A +S R
Sbjct: 239 LPKPEASSEVSERDAVPTADLFGSDNPRYQAELQWRLSTPLLVFVVTLLAVPLSRVNPRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I ++ ++ G + L +++ +L+
Sbjct: 299 GR-FLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLFYW 353
>gi|15599023|ref|NP_252517.1| hypothetical protein PA3828 [Pseudomonas aeruginosa PAO1]
gi|116051856|ref|YP_789301.1| hypothetical protein PA14_14500 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889888|ref|YP_002438752.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|254236732|ref|ZP_04930055.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387656|ref|ZP_06877131.1| putative permease [Pseudomonas aeruginosa PAb1]
gi|313109247|ref|ZP_07795215.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
39016]
gi|9950003|gb|AAG07215.1|AE004800_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115587077|gb|ABJ13092.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168663|gb|EAZ54174.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770111|emb|CAW25873.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|310881717|gb|EFQ40311.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
39016]
Length = 372
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 114/356 (32%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + + + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDTLVPGRF--QAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + R + L + Y + + + +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVM 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + +++F N R + + + + PL++ +TL+A +S R
Sbjct: 239 LPKPEASSEVSERDAVPTADLFGSDNPRYQAELQWRLSTPLLVFVVTLLAVPLSRVNPRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I ++ ++ G + L +++ +L+
Sbjct: 299 GR-FLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLFYW 353
>gi|307611507|emb|CBX01181.1| hypothetical protein LPW_28801 [Legionella pneumophila 130b]
Length = 359
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 113/354 (31%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + AD A + ++ + Q G+ + ++
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + H+ + + + I IPLM++ +TL+A +S RS +
Sbjct: 241 PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + + + +G + + L IL + +
Sbjct: 301 YSK-LLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWR 353
>gi|307824319|ref|ZP_07654545.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
gi|307734699|gb|EFO05550.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
Length = 357
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 137/359 (38%), Gaps = 8/359 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + LK +L L + L + ++ +G+ +Y ++ A P
Sbjct: 1 MNVLTGYIVREILKGSLVATLLLLTLFNLFTFSDQLKDLGK-GHYGLTEIFYYLALTSPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ ++ + + EL+ RA G+SI ++ ++ ++L + ++LV
Sbjct: 60 VFYELMPASALLGSLFILGAMGNNRELIAMRAAGLSILGIIRAVMLAGLILVVVSILVGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ + D G + + + FI +K+ + ++ +
Sbjct: 120 FVAPVAERAAQMIKVNAVDEGRVVMNVK---YGLWLREGKKFINVRKMQDDGNLADISIY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQ 238
D++ N + KL+ + + + ++N + D
Sbjct: 177 ELDDQRRLRYSIHAEKAVFQGNQQWKLEGIKQSGISIDQMTASNQNEQIWQSTVAPDLLD 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S Y++ + F ++ + E F+ +V PL+++ M L++A +
Sbjct: 237 IVVVNAHDLSMYDLAMYVDFLKDNHQKSH-EFELAFWGRVVNPLVVLVMLLVSAPFVIGV 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G I I+ G L P A+ P + ++L++ L +
Sbjct: 296 KRGINVGGRMMIGVVIGMGFNIIDKIVGHLGLIYDLNPPLMAVTPSLTVLALALFALSR 354
>gi|301017326|ref|ZP_07182090.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|300400299|gb|EFJ83837.1| conserved hypothetical protein [Escherichia coli MS 69-1]
Length = 359
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + + ++ ++ S
Sbjct: 180 DDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPSS-EYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVMMALSLVYW 354
>gi|117625285|ref|YP_854457.1| putative permease [Escherichia coli APEC O1]
gi|115514409|gb|ABJ02484.1| putative permease [Escherichia coli APEC O1]
gi|294491111|gb|ADE89867.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
gi|307625417|gb|ADN69721.1| hypothetical protein UM146_01460 [Escherichia coli UM146]
gi|315288788|gb|EFU48186.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|323951498|gb|EGB47373.1| YjgP/YjgQ permease [Escherichia coli H252]
gi|323957870|gb|EGB53584.1| YjgP/YjgQ permease [Escherichia coli H263]
Length = 359
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 2/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + + + + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQDTGQPSS-EYHLALWEKLGQPILTLAMILLAVPFTFSVPRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 299 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 354
>gi|156975868|ref|YP_001446775.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
gi|156527462|gb|ABU72548.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
Length = 366
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/350 (10%), Positives = 104/350 (29%), Gaps = 7/350 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L Q + + + +FI K ++++
Sbjct: 121 SPWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSILPSVMFSSSGEVKELADGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 QKGRDWEAYPTL-----DLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ I + I+ KS + G + + ++IL
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEEGTFPAAIGMWPINAMLLIVAIL 344
>gi|153834578|ref|ZP_01987245.1| inner membrane protein YjgP [Vibrio harveyi HY01]
gi|148869021|gb|EDL68066.1| inner membrane protein YjgP [Vibrio harveyi HY01]
Length = 366
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/350 (10%), Positives = 104/350 (29%), Gaps = 7/350 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + + +FI K ++++
Sbjct: 121 SPWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + +
Sbjct: 181 DSILPSVMFSSSGEVKELSDGRQIITMHEGTRYEGVPTRVEYMITKFDQYEGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + A+ + + I + + + +T++ +S R +
Sbjct: 241 QKGRDWEAYPT-----ADLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ I + I+ KS + G + + + ++IL
Sbjct: 296 FAK-MGPAILIYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIL 344
>gi|90411866|ref|ZP_01219874.1| putative permease [Photobacterium profundum 3TCK]
gi|90327124|gb|EAS43496.1| putative permease [Photobacterium profundum 3TCK]
Length = 366
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 112/355 (31%), Gaps = 13/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATD-GSIPGDLILTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ ++ +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL----PENHIWEDF 179
A + ++++ + + + + + +F+ + + +
Sbjct: 121 APWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T+ + R + LK Y+ +D + T + G +
Sbjct: 181 ARDTMRPSVMVAERGYVSELDDGRQILDLKDGTRYEGVPTRLDYSITEFEDYQALIGQRA 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ M S + F + + + L + +T++ +S
Sbjct: 241 IREKNRDWDALPTPTLMQHSELAARAE-------FQWRVSMFLCIPLLTMVVVPLSSVNP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + I+ KS + G L ++ ++I +
Sbjct: 294 RQGRFAK-LFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGLWSINVVMFVVAIAL 347
>gi|218885479|ref|YP_002434800.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756433|gb|ACL07332.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 361
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/355 (16%), Positives = 122/355 (34%), Gaps = 6/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY F+ L L L L + DL + + E S+S A + PL
Sbjct: 1 MSLLARYLFRNNLMLILPTLAIGTGLYILSDLFDRLDDFLE-AGVSLSVAAWYFVAKTPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II QI+P + L+ + ++R EL+ +A GIS+ ++ V+ ++ G +
Sbjct: 60 IISQILPAVFLLATLSQLCLMSRGRELIALQAGGISMGRIARVLVLCGLVWGGLQLGFSQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ SGE + + + + W + +
Sbjct: 120 VLGVSGEVEAARIWSEDVRGKTEATATLRNVWFTDGAYVVSLAEVVPAQGTGRGLAAYEL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S +++ + + + Y D + L ++
Sbjct: 180 SDDGLSILRVVRAATFTAGQRQWELHGVTEFDPSGYLSTRHDSLTLPLRQDVQAFLITAR 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + +++ + + S L ++V + AA V+
Sbjct: 240 NADPSRLPLWQLGDAIDRLSASGSNVEGVRTAWHMKLAYAASLVVMAAVAAAIVTWR--- 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + + F+ YT+ T+ + G+ GI+ P AA L +++++L L
Sbjct: 297 -DNIYLGIGLSLIITFLFYTMFTVGGTLGQKGIVSPPLAAWGSNALILAVALLRL 350
>gi|320155252|ref|YP_004187631.1| putative permease [Vibrio vulnificus MO6-24/O]
gi|319930564|gb|ADV85428.1| predicted permease [Vibrio vulnificus MO6-24/O]
Length = 366
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/349 (10%), Positives = 104/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + + +FI K ++++
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + S +
Sbjct: 181 DSILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + A+ + + + + + + +T++ +S R +
Sbjct: 241 QRGRD----WDAIPTLELIGNPD-PEAQAELQWRVSLFVCIPLLTMLVIPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + L + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|124025509|ref|YP_001014625.1| putative permease [Prochlorococcus marinus str. NATL1A]
gi|123960577|gb|ABM75360.1| possible permease [Prochlorococcus marinus str. NATL1A]
Length = 395
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/367 (12%), Positives = 105/367 (28%), Gaps = 15/367 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R+ L + + ++ + + + S + ++P I
Sbjct: 24 LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFI 83
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + +LN SE+ ++IGIS+++++ P ++ SI + T + N I
Sbjct: 84 VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRIILPGLILSIAMSYMTFIFNNNI 143
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI----------SNPQQDIFIGAKKILPEN 173
+ K ++ + + +
Sbjct: 144 VPNTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFIDG 203
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLN 229
+ + + + + + + + S
Sbjct: 204 QMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRTKFLSFLYP 263
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ + + + E M S R + + +P+
Sbjct: 264 LGTELTNIAQLPKDSNDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKFTLPIACSVFA 323
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI S + I + Y + S G GI+ P AA PV L++
Sbjct: 324 LIGCSFGVMQKSGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSPVFLSM 383
Query: 349 SLSILIL 355
+L
Sbjct: 384 LGGGFLL 390
>gi|262038164|ref|ZP_06011561.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
gi|261747812|gb|EEY35254.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
Length = 358
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 122/361 (33%), Gaps = 6/361 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y Y+K+ ++ ++ + + + + + +++ + +P
Sbjct: 1 MNK-LDKYIILNYIKSFFLGMMMFFLIFILAESINLTGWIMD-GKFTLGEAVKYLSYGIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ + + E+ + GIS ++ ++ S + + + V
Sbjct: 59 EIVTNTAPLGILLGSLLAISKMAKQLEITAMKTGGISFLRIAKFPLIFSFFVSLSVLYVN 118
Query: 121 NPIATSGE-KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I K + + + + ++I + K E
Sbjct: 119 VDILGKSNSKKSNMKLLKLEQAEPVKVEKNFILVKIDKNRILYSGYVNKKDGIMREVEII 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQ 238
K K ++ D + E+ + + I +D
Sbjct: 179 EMADEFKNVKTVYTASEGALEKGTDNWTFTNLKEHNIMTNVSKNIDPGVFKLKIPIDDIL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +K+ + + + FY+ I L M I S+ +
Sbjct: 239 ADPVKAKNLTMPELREKIVYFTRVGA-DSIDLLIDFYYRISFALASFVMCFIGLSLGSRY 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + G+ Y TIMKS +G + A +P+++ + + I + ++
Sbjct: 298 VR-GGAAVNIGLSVIIGYSYYGFSTIMKSLASTGTIPVYIACFLPLLIYLGVGIKLFMEA 356
Query: 359 E 359
E
Sbjct: 357 E 357
>gi|154248856|ref|YP_001409681.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
Rt17-B1]
gi|154152792|gb|ABS60024.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
Rt17-B1]
Length = 1111
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 118/357 (33%), Gaps = 6/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K LK L G + + ++ + I + + +P
Sbjct: 1 MKTLTRYVLKQALKPFFMGLAGFI-VFVSVEWLYQISDYIIRNRVGIDKLLLFVMYNIPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP L V ++ E+ G+S L+ PF++ +++LG F+ L+ +
Sbjct: 60 FTFLGIPVGVLFSIFWVISDMYNNREITALLVHGVSAKHLVTPFIILALILGFFSWLLGD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW--MQISNPQQDIFIGAKKILPENHIWEDF 179
+ + ++ Q+ + ++ K + +
Sbjct: 120 YVVPTANYKSSQILNQYIFQSPESVVKTNMLVELEKDVYFYVKEHNKAKGELYDVVLFRN 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K D + + + + ++ + ++ + L++ +++ +
Sbjct: 180 EEGNEQILTAKKVIKRKDGWFLLDGSMYIVELK-TGFLKLDMQFKEMKLDVAGEIEEMLR 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ ++ E+ +++ K I + + L + + LI VSL F
Sbjct: 239 AYKTTRDKTSKELREQLQTYKKLGI-NASNLIVELNQRYANALGALVIVLIGLPVSLLFG 297
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ + + + GK G++ P+ A +P I+ + ++ +
Sbjct: 298 FISR-SWSIILTFLIIVLYQGSGAWLSGMGKEGLMDPMLATWLPNIVFSVVGFIMYI 353
>gi|312884631|ref|ZP_07744334.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367723|gb|EFP95272.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
Length = 367
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 114/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ L + + + S A A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFILFLVFLSQKLIRVLADATD-GDIPASLVANYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ G+
Sbjct: 61 LIMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIKAALYLAIITGLLAAANAFFF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + L ++ + + + + +FI +++
Sbjct: 121 APYSQNQLVHLQEEAAAENNVELLQKGHFQPSPDGSSVVFIDDIDKKKLQNVFVAQLRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ +Y IP + N + +
Sbjct: 181 DSILPSVSFSQYGEVKELSDGRQVIRMYDGTRYEGIPTRLDYMVTNFDQYEGLIGQREIK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R I F + A+ + + I + L + +T++ +S R +
Sbjct: 241 SKGRGLDAIPTLNLFGDHR-----PAAQAELQWRISLVLCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I + I+ MKS +SG + V L + +I I
Sbjct: 296 FAK-MGPAILIFLAYFLAISAMKSAIESGSVSAVIGMWPINGLLLITAIAI 345
>gi|325285312|ref|YP_004261102.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
gi|324320766|gb|ADY28231.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
Length = 341
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/338 (15%), Positives = 110/338 (32%), Gaps = 4/338 (1%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + ++DL E +M + I + P + I
Sbjct: 1 MLLLFVPIGVMLDLAEKIAKMV-RNEAPTLEILEYYMNFIIYIGSLLFPIFLFLSIIFFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+ +G+ ++ I ++ I + I ++
Sbjct: 60 SKLASNTEIVAILSSGVSFGRFLRPYFMGATIIAILMFVMAMFIVPKASLDYHEFIFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
G K + + Q++ + + L N + E F +
Sbjct: 120 KKGKKFQETTNIYNQLNENEFLYISSFDPNRQLGSNFVLEHFDNDDKLAYKLTASSIRWI 179
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ K+ K+D S +++ +E+ K +
Sbjct: 180 PKDTIYRLTGFTSRTVKGNVEVIEKKSRLDTIFDFKIDDLTPVSYVAETKNIFELNKFIE 239
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
K + Y +P+ +TLIA SVS R + +A+GI F+
Sbjct: 240 DQRKKGASNINTYVMAKYKRWALPVSAFILTLIAVSVS-SIKRRGGMGLNLAFGIVIAFV 298
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + L P+ A +IP + + + +L
Sbjct: 299 YIFFDRVFAILAEKAGLSPLIAIIIPNAIFAIIGLYLL 336
>gi|93004885|ref|YP_579322.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
gi|92392563|gb|ABE73838.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
Length = 408
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/385 (13%), Positives = 127/385 (32%), Gaps = 34/385 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY L + ++G L V + + +Y++ R P
Sbjct: 28 KVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSL--DGSYTMGEAIRYIFYRSPYF 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++Q IP L+ +V L SELV+ RA GIS++++++ + +++ + + +
Sbjct: 86 LEQFIPTGALLGAVVGLGLLANNSELVVMRAAGISVYRIVSWVLQPAMIFVVLALFINQF 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---------IFIGAKKILPEN 173
+ ++ ++ + DN S W + I
Sbjct: 146 VLPYSNQLANEINSE--DNSSLVTSVRGYWTVQPRFENTKDGSAKPDGSDILYIDYADVK 203
Query: 174 HIWEDFTSITIDKKNKIIHRKD--------------------ADLAIIYNDKVKLKKVVE 213
+D + + K ++
Sbjct: 204 GNIGQVKRWHLDNNGNLQTAIHAEGGKYIGREALVTASSKPSEQYRYEWQLNNMTKLMIN 263
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+ + TL++P + + Q S ++ + F + E
Sbjct: 264 QGFESSQAISPTDTLSLPFAPESVYLLTRQAEDLSLTQLYEHRQFMRQQGTRSLS-HELA 322
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
F+ ++ PL ++++ ++A S R++ + + + G + + ++ +
Sbjct: 323 FWQKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFVSLATG 382
Query: 334 LLPVAAALIPVILTISLSILILLQK 358
P+ ++P+I + L +L ++
Sbjct: 383 FSPLMMVILPIIASALLGGYLLKRQ 407
>gi|223938399|ref|ZP_03630293.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
gi|223892968|gb|EEF59435.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
Length = 383
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/383 (12%), Positives = 111/383 (28%), Gaps = 24/383 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + L T + + ++ + + + + ++ +P
Sbjct: 1 MKILHTYLIRQVLATLMMTVAVFTFVLLLGNGLKEILVLIINRQATLGGVIQAFGLLIPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L ++VF + EL ++ G+S+ L+ P + S++L + +
Sbjct: 61 VLVFALPMGMLTAALLVFGRFSADQELTAVKSSGVSLLSLITPILGLSLVLCGVSAAINM 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI----------------- 164
IA +DL + +++
Sbjct: 121 EIAPRCRIAYLDLRDEMVGKVAGAALPDSIFVKDFPGFLIYVGASDGKNLTDIHICQLDE 180
Query: 165 --GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
K + + + D + + + + +
Sbjct: 181 NDKVKTMTDAPKGLLQRSGNQTSLELFDARIFDVQSGSWAYPGIVSQDLSSIKTNSTSKN 240
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASR----SFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ + + Q +FA S E+ ++ Q + +
Sbjct: 241 IHIGDMTFRQLQNELQVVENEFAVPEKAGSKAELQQRRDILANKKKDVTMPIRVQMHRQV 300
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
TLI + ++ R + +A + + Y+ I + +SF L P
Sbjct: 301 AFSFACFGFTLIGIPLGIQAHRRETN-VGIAMSLALVLVYYSFIILGQSFEGRPYLAPHL 359
Query: 339 AALIPVILTISLSILILLQKEDG 361
IP L ++ ++L + G
Sbjct: 360 ILWIPNFLFQAIGAVMLWRANRG 382
>gi|54307698|ref|YP_128718.1| putative permease [Photobacterium profundum SS9]
gi|46912121|emb|CAG18916.1| putative permease [Photobacterium profundum SS9]
Length = 366
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 110/355 (30%), Gaps = 13/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATD-GSIPGDLILTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ ++ +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL----PENHIWEDF 179
A + ++++ + + + + + +F+ + + +
Sbjct: 121 APWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T+ + R + LK Y+ +D + T + G +
Sbjct: 181 ARDTMRPSVMVAERGYVSELDDGRQVLDLKDGTRYEGVPTRLDYSVTEFENYQALIGQRA 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ M S + F + I + L + +T++ +S
Sbjct: 241 IREKNRDWDALPTPTLMQHSELAARAE-------FQWRISMFLCIPLLTMVVVPLSSVNP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + I+ KS + G L ++I +
Sbjct: 294 RQGRFAK-LFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGLWSINAAMFVVAIAL 347
>gi|148546262|ref|YP_001266364.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
gi|148510320|gb|ABQ77180.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
Length = 383
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 111/349 (31%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 14 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 72
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 73 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 132
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G +I Q + + + + + + +
Sbjct: 133 APLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKR 192
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 193 FNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLL 252
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ R + + R + + + +P+++ +TL+A +S
Sbjct: 253 PKPEVAEEVTEREALPTSELIGKEG-------LRERAELQWRLSLPILVFVVTLLAVPLS 305
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I T++ ++ + G L
Sbjct: 306 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 353
>gi|326423843|ref|NP_760389.2| hypothetical protein VV1_1477 [Vibrio vulnificus CMCP6]
gi|319999213|gb|AAO09916.2| Putative membrane protein [Vibrio vulnificus CMCP6]
Length = 366
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/349 (10%), Positives = 104/349 (29%), Gaps = 7/349 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + + +FI K ++++
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + S +
Sbjct: 181 DSILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + A+ + + + + + + +T++ +S R +
Sbjct: 241 QRGRD----WDAIPTLELIGNPD-PEAQAELQWRVSLFVCIPLLTMLVIPLSAVSPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I+ KS + G + L + ++I
Sbjct: 296 FAK-MGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|322514886|ref|ZP_08067903.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
gi|322119140|gb|EFX91290.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
Length = 367
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/351 (15%), Positives = 113/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVS-GKVPTDLVLSLLGLGMPALA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P V ++ SE+ + RA GI L SI V + +
Sbjct: 61 QFMLPLSLFVALLLTLGRFYTESEITVMRACGIGQSLLTQVAFFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + + I E + D
Sbjct: 121 TPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENINNEQNKLNDIYVFQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ K + +++ + +T D +Q +
Sbjct: 177 PDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTENTADFRISHFDNYQAYLGY 236
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +++++ F+ + A+ + + + + M L+A +S R +
Sbjct: 237 QDVDSNEKLVQRADFNKLM-TDSSNEAKAELQWRFALIFAVPLMALLAVPMSSVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + + + + +KS G SG L + I L++++
Sbjct: 296 FAK-VIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVM 345
>gi|242279362|ref|YP_002991491.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
gi|242122256|gb|ACS79952.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
Length = 386
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/364 (12%), Positives = 135/364 (37%), Gaps = 12/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R FK + + G M L+ + L + + A L P
Sbjct: 1 MKLLHRNIFKELISIFTLSISGFMGLILIGRLL-QFRDLFMGQSLGALEMAKLFMYLCPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P T++ + F +N +E+ ++ G+S+++LL ++ +L
Sbjct: 60 FLLMLTPIATMLSIFLTFLRMNADNEITALKSGGLSLYRLLPAPIIFCLLCTGADFYFSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-------FIGAKKILPENH 174
+ G + + + ++ + + + + + ++
Sbjct: 120 YGLSWGTENFRNALMEFARTQSQLAIQPGVFNKNFPGLVFYADGVDEKSGIMRSVFVRDN 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ T+ + +I +I+ + K+ + + Q + + + +
Sbjct: 180 TRKGMTATIVAPLGEIRTDPKMGRLLIHLENGKIYQQEKDQLSVLKFKNYDVRIPLANIL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH---NYRAETQFYFLIVIPLMLVAMTLIA 291
G+ + S+ ++++ +++ + + + + +P+ + + + A
Sbjct: 240 KGYDVDELRPKEMSWKKLVRISRAGDRAGDIDPGFFKKVQVEVQKRLALPVACLVLGMFA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ F R + + + + + YT++++ +FG+SG+L PV +P I +S
Sbjct: 300 VPIACIF-RGLKQQYGLIISMGLFLVYYTMLSLGVTFGESGVLTPVIGLWLPNITFAIIS 358
Query: 352 ILIL 355
+++L
Sbjct: 359 VVLL 362
>gi|294055919|ref|YP_003549577.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
gi|293615252|gb|ADE55407.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
Length = 382
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/379 (8%), Positives = 116/379 (30%), Gaps = 23/379 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L R+ FK L + + ++ + + L +P
Sbjct: 1 MLNLLHRHVFKEIAVAILLAMGLFIFVLLTGNAIRDVAALVAAGKLDAMTFIKLMGLLIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L ++ L+ E+ ++ G+S++Q+ +P + + + +++V
Sbjct: 61 YVAAYALPLGILTGTLMALGRLSSQREITAMKSAGLSLYQIASPVFFIAFIAMVLSLVVN 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS--------------NPQQDIFIGA 166
A + +++ + + ++ ++
Sbjct: 121 LDFAPRAKSAFKEMLASTISENPVKFIEEKKFITGFPGYVIYMGDHDGGLMKDFWVWELD 180
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ + + + D++ + + + D + ++ I +
Sbjct: 181 DRKQVTRFVRAESGELDYDREANELVLRVYNATAELRDDDAPETLLGEDLQTIFFQETEF 240
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIK--------KMSFSNKSNIFHNYRAETQFYFLI 278
L + + + + +F ++++ + +A+ Q
Sbjct: 241 ALPLERLFGQQKTRHVKIKNMNFAQLMEVREAALQAEAQSEEPGISKQRMQAQVQIQKNC 300
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ ++ L ++++ R +A + Y ++ ++ L P
Sbjct: 301 AMAFSTFSLALFGVPLAIQVGRKESYA-NLAIALIIAMTYYFLMIVVSWMEDRIELRPDL 359
Query: 339 AALIPVILTISLSILILLQ 357
+P IL + + ++ +
Sbjct: 360 LIWLPNILFQGIGLYLIRR 378
>gi|310822424|ref|YP_003954782.1| hypothetical protein STAUR_5183 [Stigmatella aurantiaca DW4/3-1]
gi|309395496|gb|ADO72955.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 371
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 119/364 (32%), Gaps = 13/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K L ++ +L+FV+ + ++ +++ L P +
Sbjct: 3 LLARYLLKELLAPLGVWVAFMFLLLFVMQFL-LGTEVLLGSAVTLTDIGRLILYLTPHFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ L+ EL +A+GIS QLL + +LL L+
Sbjct: 62 VKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGPMAIGLLLAGLMALLAFTA 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-LPENHIWEDFTSI 182
G +L+ + + + + + H+
Sbjct: 122 QPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLSDLTLYAERVSREGGEWTHVLLHDDRE 181
Query: 183 TIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPI--------K 233
+ R + ++ L++ ++ R D +
Sbjct: 182 PSSPLLVLAQRGRVSMREGDEALRLVLEEGEVHRATRSTADYSLLRFEQGEISVGLGGSM 241
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+F Q S E+I+ + KS + + + + ++ L+
Sbjct: 242 NRKSNRFRSQKEEMSPGELIQAAEEAEKSGG-NPRPFLMAIHMRLGNAVAPLSFALLGTP 300
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+++ ++ + + + Y + + ++ G L V AA +P IL L ++
Sbjct: 301 LAIGRKQAGR-AWGYLLTLSGYVLFYVLSRVFETLGNQEKLPMVLAAQLPNILFSVLGVV 359
Query: 354 ILLQ 357
+ +
Sbjct: 360 AMWR 363
>gi|15806095|ref|NP_294799.1| hypothetical protein DR_1075 [Deinococcus radiodurans R1]
gi|6458807|gb|AAF10648.1|AE001958_2 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 394
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/384 (11%), Positives = 107/384 (27%), Gaps = 38/384 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L ++ L +S A ++P +
Sbjct: 17 LTRYVTRELLPPLLAGTLLFTAILSFGYFF---ISSQWLSGVPVSLIARWIGYQLPDTLV 73
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ +V F +N ELV +A GI + ++ P V +L+ +V + +A
Sbjct: 74 KVLPMAVVLMTVVAFGRMNTERELVAVQAGGIGLGRVTRPAAVVGLLVTALSVWLSLWVA 133
Query: 125 TSGEKIGIDLIQQWKDNGDKQK------------------------SDIIPWMQISNPQQ 160
L + ++ +
Sbjct: 134 PRANVETRGLYWDALTGAGLSQLVGKTVDLGQGLTLAMQGYDAGARQMQGVRVEKWDKDN 193
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ A + ND ++ V+ + +
Sbjct: 194 FRQGMVVFADAGKFEGNQLSLTGYQVYRVDYAAAAALSGVADNDPAAFREAVQKVFPLVQ 253
Query: 221 IDKNS---TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFY 275
+ ++ L+ + + ++ + + R
Sbjct: 254 VPEDRNAALNLDTGLSRKQTLAQYADAIGADAEGWPELITKLTAPGVPQSERDAARVNLN 313
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P + + L A +L F R + + + Y + ++ + G+L
Sbjct: 314 RKLALPFANLVLVLAALPFALRFGR--TLGVSLGVALVIAVAYYLLFSVGLTLA--GLLP 369
Query: 336 --PVAAALIPVILTISLSILILLQ 357
P + I+ + +L +
Sbjct: 370 GLPELGVWLANIVFALGGLWLLRR 393
>gi|189347121|ref|YP_001943650.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
gi|189341268|gb|ACD90671.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
Length = 403
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/396 (10%), Positives = 114/396 (28%), Gaps = 41/396 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K ++ + + + ++ + L ++ +I+ A L +
Sbjct: 1 MKIIDRYILKSHIGPFILAFITIVFVLVLQFLAGFSDRFLGK-GINIADIAELVMLQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P LV I+ + + +SE+ + RA G+S+++L P ++ + LL + N
Sbjct: 60 MVVFAVPMAVLVAVIMAYGTMTNSSEMTVFRASGLSLYRLAVPVLIVAALLSLLVERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
+ L+ + + + E + D
Sbjct: 120 VVIPEANYRSKSLMMDIARAKPTFGLTENAFSSFIDGYSIFVRKTDEASKEIRGVVLYDL 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM----- 234
+ + L +Q + K ++
Sbjct: 180 RNPKSRTMMSAERGVIRFSPDNRFLVMTLFNGEIHQIDQSDYHKYRAMRFGQHRLVFETT 239
Query: 235 ------DGFQKFSEQFASRSFYEII--------------------------KKMSFSNKS 262
+ + S E+ ++ ++
Sbjct: 240 GFGFSRTSNDRIRGNISELSAGELHVAASALQRGIVSAERRVASITDAGPLQREQERIEA 299
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + ++Y I + L + + +R + + + +++I
Sbjct: 300 DKMQYNKYLIEYYKKYAISVACFVFALAGIPLGV-LARRGGFGVGAGISLALFVLYWSMI 358
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+L PV + +T + +L +
Sbjct: 359 IGGEKIAERGLLDPVLSVWSANAVTGLFGLFLLHRM 394
>gi|149190546|ref|ZP_01868816.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
gi|148835670|gb|EDL52637.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
Length = 371
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 116/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ L L ++ F ++ + + LA +P +
Sbjct: 2 IIVRYLIRETVKSQLAIFLVLFLVFFSRQFIQVLADASD-GDIPAGLIMTLAGISMPTMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + +V F L SE+ + A GI L+ + ++L +
Sbjct: 61 LLMFPLSIYIGILVTFGRLYAESEITVMNATGIGNKFLIRAAMYLAVLTTSLAAFNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ + + ++ + + + + +FI + K +++ +
Sbjct: 121 APWTQEQEVQIRERLASENSVELLQTGSFQRTPDGSSVVFIDSIKDKKLTNVFVAQLNPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+I K D+ + + + + +Y +P + Q
Sbjct: 181 DSVLPSVISAKSGDVKELSDGRQVIALYDGVRYEGVPTRLEYMVTEFTDYEGVIGQREVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
RS + +A+ + ++ I + + + +T++ +S R ++
Sbjct: 241 QRGRS----WMAIPTMELLGNPD-PKAQAELHWRISLVVCIPLLTMLVVPLSAVNPRQSK 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I + F + I+ MKS + G + +I +
Sbjct: 296 FAK-MGPAILAYFAYFMAISAMKSALEDGAFPSYIGLWPVNFALLLAAIGV 345
>gi|146283386|ref|YP_001173539.1| permease [Pseudomonas stutzeri A1501]
gi|145571591|gb|ABP80697.1| predicted permease [Pseudomonas stutzeri A1501]
Length = 373
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 116/362 (32%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSRELLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLLLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSMAPAALVAALVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK--------ILPENHI 175
A G ++ Q + + + + + +
Sbjct: 121 APQGIAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETN 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
T + ++ + + L+ Y D + + +
Sbjct: 181 VSRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S + + R + + N R T+ ++ + +PL++ +T++A ++
Sbjct: 241 PKPEVSMELSEREAMPTRELL-------GSDNLRHRTELHWRLSLPLLVFVVTVLAVPLA 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I ++ ++ G L L +++ +L+L
Sbjct: 294 KVNPRQGR-FLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIGLLML 352
Query: 356 LQ 357
Sbjct: 353 FW 354
>gi|189485655|ref|YP_001956596.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287614|dbj|BAG14135.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 361
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 132/361 (36%), Gaps = 8/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL++Y K ++K L+ ++ + +L N + + + +P
Sbjct: 1 MKILYKYITKIFVKIFLFTTAVIALVGIISELFRQTNLYIDNK-TPFYLILIHLLSDMPW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q +P L+ + +L++ +E+ +A GI+I +++ F + ++G +
Sbjct: 60 WLIQALPISALLALLFALGDLSKNNEITAIKAAGINISRIIILFFIMGFVIGTGDFAIKE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + I++ K +K + I + I + E ++ ++
Sbjct: 120 FIVPKTS-LYNKAIEKEKIQKEKINIKTEFYSLIVPALSNTRITIDHLNTEENVMKNIAV 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPIKMDG 236
K KI H A++ I ND LK + + ++ ++I +
Sbjct: 179 EKYSDKFKIEHLILAEVGIWENDSWLLKNGIIRNFNANFWNETYFEQYNSNIHIKPEHMA 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + K ++ R + + +I ++
Sbjct: 239 MAIQDVNYETMNMHALKKYINQLRLFGQ-TTVRERIILNIRFAAVYAYIVVMMIGIPFAI 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F + + + + + I KS G++ IL P AA +P ++ ++ I +L+
Sbjct: 298 GFENKLGKILSSTLAMTAALIYWGTQAITKSLGENLILSPFIAAWLPNLIFSAIGIYLLI 357
Query: 357 Q 357
+
Sbjct: 358 K 358
>gi|54298619|ref|YP_124988.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
gi|53752404|emb|CAH13836.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
Length = 359
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/354 (13%), Positives = 112/354 (31%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPKQLLKHSFAMATVVLVVVAVVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLVQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + AD A + ++ + Q G+ + ++
Sbjct: 181 VQDNRLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + HN + + + I IPLM++ +TL+A +S RS +
Sbjct: 241 PTVVMHDDARTAKTRDLWPLNNHNLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + + + +G + L IL + +
Sbjct: 301 YSK-LLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHAAVAILGILFIWR 353
>gi|323697852|ref|ZP_08109764.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457784|gb|EGB13649.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 391
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/366 (14%), Positives = 117/366 (31%), Gaps = 12/366 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R F K + + L+ V + + N + L P
Sbjct: 1 MKLLQRQIFLELCKLFGLTVSCLLGLILVGRML-QLRSLFLSQNIGVLNILQLFFYLTPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I P T++ + F ++ +ELV +A G+S++++L V+ L +F +
Sbjct: 60 FLLLITPIATMLSVFLTFLRMSTDNELVALKASGVSLYRMLPAPVLFCSLCTLFAFFISF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
G + + + K + + E
Sbjct: 120 WGLAWGMDMFKTKLYYFAKTHSKFALQPGVFNKEFPNITFYAHQVDNEKGELKFAFVRDD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-------- 233
++ + ++ K+ + + + + N
Sbjct: 180 SIKGTSVVVVAPEAEVVSNPQEAKIHVVFHNGRIFRQSGDELNILKFRKYSIKLDLGKLL 239
Query: 234 --MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++ ++ +I K S N + +T+FY + +PL + L A
Sbjct: 240 TGFNFAEQKAKDMPFFRLRDIRKDHSLMPHENERFFRKVDTEFYKRLTLPLGCFILGLFA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + + + + + YT+ +I S G+SG + P P IL I ++
Sbjct: 300 IPIA-SIFRGLRQQYGLLLAMGLFMVYYTMFSIGVSMGESGTIPPEYGMWAPDILFIFVA 358
Query: 352 ILILLQ 357
+ L
Sbjct: 359 LAGLRY 364
>gi|330873094|gb|EGH07243.1| hypothetical protein PSYMP_02391 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 375
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 114/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAVLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ S + + ++ + + L+ Y D +
Sbjct: 181 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSELFGN-------PAPRSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + + + +++
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIGLVLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|213968383|ref|ZP_03396527.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|213927021|gb|EEB60572.1| membrane protein [Pseudomonas syringae pv. tomato T1]
Length = 378
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 113/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 5 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 64 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 124 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 183
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ S + + ++ + + L+ Y D +
Sbjct: 184 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 243
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + R+ + + I +PL + +TL+A +S
Sbjct: 244 PKPEISEEITDREAIPTSE-------LFGNPAPRSVAELQWRISLPLSVFIVTLMAIPLS 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + + + +++
Sbjct: 297 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIGLVLF 355
Query: 356 LQ 357
Sbjct: 356 YW 357
>gi|190150428|ref|YP_001968953.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250152|ref|ZP_07336354.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|303253325|ref|ZP_07339474.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|189915559|gb|ACE61811.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648007|gb|EFL78214.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302651215|gb|EFL81369.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 367
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 54/351 (15%), Positives = 112/351 (31%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVS-GKVPTDLVLSLLGLGMPALA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P V ++ SE+ + RA GI L SI V + +
Sbjct: 61 QFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + + I E + D
Sbjct: 121 TPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENINNEQNKLNDIYVFQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ K + +++ + + D +Q +
Sbjct: 177 PDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGY 236
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S +++++ F+ A+ + + + L + M L+A +S R +
Sbjct: 237 QDVDSNEKLVQRADFNKLMADQS-NEAKAELQWRFALILAVPLMALLAVPMSSVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + + + + +KS G SG L + I L++++
Sbjct: 296 FAK-VIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVM 345
>gi|28868483|ref|NP_791102.1| hypothetical protein PSPTO_1272 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|301384649|ref|ZP_07233067.1| hypothetical protein PsyrptM_18512 [Pseudomonas syringae pv. tomato
Max13]
gi|302058898|ref|ZP_07250439.1| hypothetical protein PsyrptK_02842 [Pseudomonas syringae pv. tomato
K40]
gi|302133011|ref|ZP_07259001.1| hypothetical protein PsyrptN_16554 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851721|gb|AAO54797.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|330963184|gb|EGH63444.1| hypothetical protein PSYAC_00750 [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015232|gb|EGH95288.1| hypothetical protein PLA106_04717 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 375
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 113/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ S + + ++ + + L+ Y D +
Sbjct: 181 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSELFGN-------PAPRSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + + + +++
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIGLVLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|261211062|ref|ZP_05925351.1| predicted permease [Vibrio sp. RC341]
gi|260839563|gb|EEX66174.1| predicted permease [Vibrio sp. RC341]
Length = 366
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/353 (9%), Positives = 109/353 (30%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + ++++ +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ + + + + L Y+ +D T + + G ++
Sbjct: 181 DSVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + +++ + + + + + +T++ +S R
Sbjct: 241 STGRDWEALPTLSLLKNADRQAQAE-------LQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + ++ KS + G L + + ++++
Sbjct: 294 GRFAK-MGPAILIYLTYFLTLSATKSAIEDGSLPVIIGLWPVNAALLFAALIV 345
>gi|262341159|ref|YP_003284014.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272496|gb|ACY40404.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 359
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/360 (13%), Positives = 118/360 (32%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L T ++ + +L VID+++ +++
Sbjct: 1 MKILDRYIIRNLLITFIFITVSLQLLSVVIDISQRMHRLENNQGSIKKALIFYYPYWSIW 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L SE+ + GIS+ +L+ P+++ +I++G ++L+
Sbjct: 61 LANTFSPISVFLSVIFFTSKLENNSEITAILSSGISLNRLIVPYLISAIMIGTVSLLINY 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
K Q+ + + + ++ +I + + +I ++F
Sbjct: 121 YFLPMANKKKNQFHYQYLLSSRYKNKYEKNQTISTQISKNEYIFIRNFSRKKNIGKEFVY 180
Query: 182 ITIDKKNKIIH-RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK---MDGF 237
+ K I + L E + I +
Sbjct: 181 QKFNGKKLIYILKSKNIFGYKKKKIYVLSDYRETTIKKNYDFFIKGDYKIKKFSFTPEEL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + YE+ K + K+ + ++Y +P T++ S+S
Sbjct: 241 LPEEYIAETMNIYELKKFIDIEKKN--RNVNIHLNEYYQRTSLPFSTFIFTILGFSLS-- 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S+ ++ + GI + I K + + + +P +L +++ +
Sbjct: 297 -SKKSETGYNIILGIVLAVFYIFFMEITKIYSTKDTIPSYLSVWLPNVLLGIIALFFYWK 355
>gi|313680974|ref|YP_004058713.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153689|gb|ADR37540.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 377
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/382 (13%), Positives = 118/382 (30%), Gaps = 30/382 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + + L + VF+ + ++ L + + VP
Sbjct: 1 MFTILDRYILREVV-PVLLVSALLYVAVFLFGFFYVGSR--WLDGAPVLKVLTWLGYHVP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ Q++P + ++ F + ++ ++A G+S+ +LL P ++ LL F++ +
Sbjct: 58 GVLVQVLPMAVVSAVVIPFGRMATEGAVLATQAGGVSLVRLLRPVLLLGFLLAGFSLYLS 117
Query: 121 NPIATSGEKIGIDLIQQ---------WKDNGDKQKSDIIPWMQISNPQQDIFIGA----- 166
+ ++ G + S
Sbjct: 118 ENVVPESNARVRGYWYDELTTPGHGLYRLRGKTVPLGNGIELFFSGYDWAHRAMTGVRLQ 177
Query: 167 -KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV--------EYQYG 217
K I+ D +R + +
Sbjct: 178 LWKDRQVTVIFADRGVYQGRDLKLTGYRIYTVDYAAIDGLLNASDAQLPARLQQVFKNVS 237
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ--FY 275
++ STT+ + + D + + + + R + F+
Sbjct: 238 VPRSEEASTTIKVGLSRDEALANFADPLAADTLSLSEAWQRYTDPKLAPADRTDAGLAFH 297
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +PL V + LI+ ++ + R P + + + Y + + +S G G+L
Sbjct: 298 SKLALPLANVVLVLISLPFAVYYGR--SPGLSMGMSVMIAVGYYLVFLLARSMGGLGMLP 355
Query: 336 PVAAALIPVILTISLSILILLQ 357
P AA +L + ++ +
Sbjct: 356 PALAAWGANLLFAFVGWRLIRR 377
>gi|327481779|gb|AEA85089.1| permease [Pseudomonas stutzeri DSM 4166]
Length = 373
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 116/362 (32%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSRELLITMSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLLLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSLAPAALVAALVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK--------ILPENHI 175
A G ++ Q + + + + + +
Sbjct: 121 APQGIAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETN 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
T + ++ + + L+ Y D + + +
Sbjct: 181 VSRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S + + R + + N R T+ ++ + +PL++ +T++A ++
Sbjct: 241 PKPEVSMELSEREAMPTRELL-------GSDNLRHRTELHWRLSLPLLVFVVTVLAVPLA 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I ++ ++ G L L +++ +L+L
Sbjct: 294 KVNPRQGR-FLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIGLLML 352
Query: 356 LQ 357
Sbjct: 353 FW 354
>gi|315179053|gb|ADT85967.1| hypothetical permease [Vibrio furnissii NCTC 11218]
Length = 367
Score = 99.8 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/340 (10%), Positives = 103/340 (30%), Gaps = 11/340 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLFLVFLSQKFIRVLADASD-GEIPARLILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + I+ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLGIITSCLAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW--EDFTS 181
+ + +++Q + + + +FI + ++++ +
Sbjct: 121 SPWSQDKVQSVMEQLAAENSVDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPR 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+I D + + Y+ +D T + + G +
Sbjct: 181 ESILPSVMFSDAGDVKELSDGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E+ ++ + +++S + I + + + +T++ +S R
Sbjct: 241 EKGRDWEAIPTLELVKNADRSAQAE-------LQWRISLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + I + I+ KS + G + +
Sbjct: 294 GRFAK-MGPAILIYLTYFLAISATKSALEDGSIPAIVGMW 332
>gi|189501496|ref|YP_001957213.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496937|gb|ACE05484.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
Length = 357
Score = 99.8 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 114/353 (32%), Gaps = 2/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K +L + L+ L ++++ +ID+ E S A +P
Sbjct: 1 MKLLDRYILKKFLFSFLFILCLIILIITLIDITEKNEYFI-RHKLSFREIADYYYNFLPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P + I V L + +E++ + G+S + L P+++G+ L IF ++I
Sbjct: 60 MTNMVSPITIFITTIFVTSRLAQRTEIIAILSGGVSFVRFLVPYLIGATFLAIFNFMLIG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I K + ++ D+ + S I ++ + + +
Sbjct: 120 WILADANKKRVAFEIEYVDSPYRSSSRNIHIKLSTDTYLYVGYYRSYNGLGTDVTLETIR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + L + + + F
Sbjct: 180 DNRLMEKISAKAIRWVEESGQWQLKDWICRKIDGLDEHITSGKAMDLTLNLHPEDFSINP 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E+ K + + + T+ Y + P + +TL+ VS SR
Sbjct: 240 KLHEMLTLTELDKHIQKLREKGTDNLNFFLTEKYVRYMSPFAAIILTLMGVVVSARKSR- 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +A G + + + +P I+ +++++
Sbjct: 299 GGVGLQIALGFILALIYIAFFLFARGAANVKGNNLLLTIWMPNIVFSIITLIL 351
>gi|307299316|ref|ZP_07579117.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915112|gb|EFN45498.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 1438
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/337 (14%), Positives = 111/337 (32%), Gaps = 2/337 (0%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
++ L I+ ++L + M I + +L +P I IP L+
Sbjct: 4 IFVGLAGFIIFVSLELLYYLSDMIIRYKVGIDKLFLLIYYNLPEFIVLGIPVGILLAIFW 63
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
V + +EL+ + GIS+ +L+ PF++ I+ F L+ + + + + + +
Sbjct: 64 VLSRMRSDNELIALQTHGISLKRLVIPFLLIGIIFSGFAYLLNDYLVPAASTKANEAMAR 123
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ + +MQ S + + E +
Sbjct: 124 FVYKQPEVTLKENVFMQDSQGRMIYVRRIDQDTKELKNVSIYEVSRGQVTLTTAESAVIS 183
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
K + + E + + + + I ++ + + ++ E+ +
Sbjct: 184 SNKWILSKANIYQTDESGFLGVEMQFGTAEFEIDEDIERYLASFKSPKEKTSKELRDDIE 243
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ I + E + + + + L+ VSL F+ ++ V +
Sbjct: 244 AFKNTGI-NTSSLEVALQEKYSMSIAPLVIVLLGVPVSLMFNLQSK-SWSVILTFLLVVI 301
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ GK ++ P A IP I L ++I
Sbjct: 302 YQGSGAWLSGMGKENLINPSLAPWIPNITFSILGVII 338
>gi|330938932|gb|EGH42431.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
Length = 375
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 115/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S + + ++ + + L+ Y D + M
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSELIGD-------PAPRSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + +S+ +L+
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|117925962|ref|YP_866579.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
gi|117609718|gb|ABK45173.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
Length = 392
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY T+ L+ LV + + + + + S+S + +P
Sbjct: 1 MKRLSRYLLTECALTSFTALVVLTTLVLLPQIL-MLVDLWVNKSVSVSVLGKMVLLIMPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P LV ++ L + SEL++ +A GIS+ ++ P V +++ ++ +
Sbjct: 60 FLVASLPMALLVGILIGLGRLAQDSELIVIKASGISLLRIFYPLSVPIVVVTACSLYLNW 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ I + + +
Sbjct: 120 FLVPDSHTLFQNIRVALLSQNTFSIKTQTFNNTIPGLTIYVNRQSHGGKLLEGLLIHDER 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ--YGRIPIDKNSTTLNIPIKMDGFQK 239
I + LK+ +Q G N +T ++ + + +
Sbjct: 180 DPDMPVTVIAKSGMLHRGSTGETALLLKEGSRHQMAPGNAYRRLNFSTYDLELGIAFETE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + Y I + AE +++ IPL + + +A ++++ +
Sbjct: 240 SSSGDRAIRSYSIADLEQARIAQDPLLASEAEREWHRRFAIPLATLLLGFLAIPLAMQQN 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + ++T+ ++ K G++ P A P + + + +
Sbjct: 300 QRSGRGFGFIVAISVLILQFILLTLGEAMAKRGLISPAMGAWSPNLALLLFTSYV 354
>gi|30248805|ref|NP_840875.1| hypothetical protein NE0801 [Nitrosomonas europaea ATCC 19718]
gi|30180400|emb|CAD84712.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 358
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/359 (12%), Positives = 114/359 (31%), Gaps = 15/359 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + L + + + L + + L + +
Sbjct: 1 MKIIERYITRELLFPFIVVTVILIGLFVSFSVARFLTSAVTET-LGTAAMFKLVGLKTII 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V I +NR E+ + R G +++ V ++ + I + ++
Sbjct: 60 ALEVLVPIAFYVAVIYGLSRMNRDQEINVLRTAGYGDNRIIRTVFVIALPIAILSGILSV 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ Q + + + + + IFI K L +
Sbjct: 120 YARPWAYAESYIMDAQAEAELNTNRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGVFHYI 179
Query: 182 ITIDKKNKIIHR--KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + + II R + ++L++ Y+ + ++ I + +
Sbjct: 180 RTTEDREIIISREGYQQPMTAEQWPHIELREGQIYRLSFDTVKDSAIRFEKMIYFNENDQ 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+K + + R + + + P+ V + LIA S +
Sbjct: 240 AQN---------YRRKAASTRSLWDSEEPREIAELQWRLSRPVATVLLALIAVSFTRTAP 290
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R ++ + Y + + K++ + G++ + + L I+++L+
Sbjct: 291 RKDKTDRTFLVAALVFAVYYNLSGLAKTWVEQGVVAAMPGVWW---VYGLLIIIVMLRL 346
>gi|255613816|ref|XP_002539536.1| Inner membrane protein yjgQ, putative [Ricinus communis]
gi|223505146|gb|EEF22847.1| Inner membrane protein yjgQ, putative [Ricinus communis]
Length = 283
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 15/287 (5%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+ +SEL++ R GIS+ + + ++ + T L+ IA EK+ + Q D+
Sbjct: 1 MASSSELIVMRTSGISLQTIAKMLLSIGLVFALVTFLIGEIIAPISEKMAQRIRIQATDS 60
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
Q W++ + ++ + D D + ++ + AD
Sbjct: 61 VVAQDFQSGLWIKDGSSFVNVATVM-----PDTSLVDIRIYDFDAQFRLRNISHADKGYF 115
Query: 202 YNDKVKLKKVVEYQYGRIP---------IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+D L V + + T I+ + S + +
Sbjct: 116 EDDHWILSNVTQTKMHTSKSAQNNSVTSQFFKQTKWESLIRPELLNVLLVLPEKMSAWNL 175
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ + +++ R + + +V PL + M ++A R+ + GI
Sbjct: 176 YSFIQYLHQNGQRST-RYQVALWSKLVYPLACLVMVMLALPFGFLQQRAGGISAKIFAGI 234
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
F G + + + G P+ +A+ P +L ++ + +L E
Sbjct: 235 FLGVVYQIMNRVFVHLGVLNDWSPLVSAISPTLLFLAAGLGMLYYVE 281
>gi|170723397|ref|YP_001751085.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
gi|169761400|gb|ACA74716.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
Length = 371
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/349 (12%), Positives = 113/349 (32%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + S ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPSVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G +I Q + + + + + + +
Sbjct: 121 APLGVAQVQQIIGQQDALTEFDTLVPGRFQTLRDGSRVTYTEELTDDRSNLTGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + + + R + + I +P+++ +TL+A +S
Sbjct: 241 PKPEVSEEVTEREAIPTSQLIGNAG-------LRERAELQWRISLPILVFIVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I T++ ++ + G L
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341
>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
Length = 379
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/362 (14%), Positives = 128/362 (35%), Gaps = 15/362 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + +F L +++ ++ + +++ + + +P ++
Sbjct: 4 FDRYMLSQLMVVFGFFALVLVMVYWLNRSVGLFDELIANGH-TAGIFLEFTLLALPGVVA 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V ++ SEL + +A G+S W+L P +V ++G ++ + +
Sbjct: 63 IVLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHVLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + ++ P + + + I PE + + F S
Sbjct: 123 PASIGQLRERESEISGSVSARLLHEGTFLH---PTRGVTFYIRDITPEGELRDVFLSDRR 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKK-------VVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D I + + + +D KL + D + T +I +
Sbjct: 180 DPDRAIAYTAQSAYVLRDDDGPKLTMRSGLAQTLRAEDQTLSTTDFENLTYDISGLVTQN 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI--AASVS 295
+ S +E++ ++ + + PL+ V LI AA ++
Sbjct: 240 GPPRRRARQISTWELLTDTEAVSEEVKDSVGEVLEEAHMRFEQPLLCVVAALIGYAALMT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR + IV F+ + + L P+ +P I+ + ++ ++L
Sbjct: 300 GGFSRFGVTKQIVGAIFLLVFIKIVESMVTTPVHANAALWPLI--YLPSIVGLIIAGVLL 357
Query: 356 LQ 357
+
Sbjct: 358 QR 359
>gi|118602882|ref|YP_904097.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567821|gb|ABL02626.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 360
Score = 99.8 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 113/359 (31%), Gaps = 4/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K T +L + + + E +G+ NY++ + +P
Sbjct: 1 MKILDRYIVKTMAFYTSAVMLVWLGIYAFFNFLEEVTFIGQ-ANYTVFEVTKYVISDIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I L+ +++ +L TS+LV+ R+ G+SI Q+ N V +++ + +
Sbjct: 60 VVYSYSSVIILLGSLLALGHLASTSQLVVIRSAGVSIMQISNIVVRAALMFIAIVIFIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L + K+ W++ S + ++ +
Sbjct: 120 LVTPITIEYAESLRAKALGENITFKNQQGFWLKDSELFIHVKKNFDGKSFQDVTLIKLRA 179
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ D + + ++ + +
Sbjct: 180 PDTLDSIVHSDSAISNGDNLELSQSIHYQFGKDGNLTTFSENNFEKYSVQVSFNKKLIEN 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + +++ F N E + Y ++ P+ L+AM L +
Sbjct: 240 LKKDPRELSTWHLYQQIRFLTI-NHLAADIFEVEIYKRLMKPITLIAMILFSMLFVFGSL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + G+ I +A IP +L + +L +K
Sbjct: 299 RDASLGKNIFLGLMMSLFFELASRIGGVLSLRFDYNHFLSASIPTLLMLVFVWALLKKK 357
>gi|119944176|ref|YP_941856.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
gi|119862780|gb|ABM02257.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
Length = 358
Score = 99.8 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 11/352 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K+ + L +++ I Q L +P +
Sbjct: 2 ILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAIN-GVIPADLVMTLLYLNLPQLG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L+ SE++ + G S +L ++ S L F +
Sbjct: 61 TLMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E I +I++ + N + + S ++I + I+
Sbjct: 121 APLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYIEKSADKKLDKIFAAHWPED 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ ++ + L + L Y + + + ++ +
Sbjct: 181 RKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
Q + N + + + + I IP+ ++ MT +A ++ R
Sbjct: 241 QVRGVQALP-------TAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + +++ KS + G L PV + I I + L I++
Sbjct: 294 RYSK-LLPALALYLTFFLLLSTAKSLIEDGSL-PVFSIWIVQISFLLLGIIL 343
>gi|71738034|ref|YP_273425.1| hypothetical protein PSPPH_1158 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487386|ref|ZP_05641427.1| hypothetical protein PsyrptA_29203 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289623815|ref|ZP_06456769.1| hypothetical protein PsyrpaN_01510 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649166|ref|ZP_06480509.1| hypothetical protein Psyrpa2_15674 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298485819|ref|ZP_07003897.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|71558587|gb|AAZ37798.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298159643|gb|EFI00686.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322888|gb|EFW78979.1| hypothetical protein PsgB076_20537 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329803|gb|EFW85791.1| hypothetical protein PsgRace4_11121 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867846|gb|EGH02555.1| hypothetical protein PSYAE_11461 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330989713|gb|EGH87816.1| hypothetical protein PLA107_32136 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009018|gb|EGH89074.1| hypothetical protein PSYTB_04815 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 375
Score = 99.8 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 115/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI + + + + + + + +
Sbjct: 121 APQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S + + ++ + + L+ Y D + M
Sbjct: 181 MSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSELIGN-------PAPRSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + +S+ +L+
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLSIGLLLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|258625833|ref|ZP_05720712.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258582071|gb|EEW06941.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 366
Score = 99.4 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/351 (9%), Positives = 110/351 (31%), Gaps = 11/351 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI + ++++ +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ D+ + + + L Y+ +D T + + G ++
Sbjct: 181 DSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +A+ + + + + + + +T++ +S R
Sbjct: 241 SSDRDWEALPTLSLLKN-------SDLQAQAELQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + I + ++ KS + G L + + ++
Sbjct: 294 GRFAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPVNAALLIAAL 343
>gi|197287277|ref|YP_002153149.1| permease [Proteus mirabilis HI4320]
gi|194684764|emb|CAR46793.1| putative permease [Proteus mirabilis HI4320]
Length = 365
Score = 99.4 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 124/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L M++ F L EI N + L +P +
Sbjct: 2 IIIRYLARETLKSQIAILFILMLIFFSQKLVEILG-AAVEGNIPTNLVVSLLWLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A GI L+ ++ S+L + + +
Sbjct: 61 QLILPLSLFLGLLMTYSKLYVESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ K N + S+ +++G+ K ++ T
Sbjct: 121 IPWSSVHQEQVLEDAKANPSLAALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + N + +Y + ++ +
Sbjct: 181 QNQRPSVVVADKGYTKELPNGNQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRES- 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N+ + +F++ + + +V M L+ +S R +
Sbjct: 240 ----TISRNRVEQKTMNELWHSTEPESIAEFHWRLTLIFSVVIMALMVVPLSEVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G+ G + P+ A + +L++L+
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSSGEKGKVDPLIAMWTVNGIYFALALLL 345
>gi|66044343|ref|YP_234184.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|302188386|ref|ZP_07265059.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
gi|63255050|gb|AAY36146.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|330899517|gb|EGH30936.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330950946|gb|EGH51206.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
gi|330969234|gb|EGH69300.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 375
Score = 99.4 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 115/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S + + ++ + + L+ Y D + M
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSELIGN-------PAPRSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + +S+ +L+
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|330962173|gb|EGH62433.1| hypothetical protein PMA4326_26812 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 375
Score = 99.4 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 113/362 (31%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLVVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSDDRSQLTGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S + + ++ + + L+ Y D +
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGTAL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + R+ + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEVTDREAIPTSELFGN-------RTARSVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + +++ +++
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLAIGLVLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|82701536|ref|YP_411102.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
gi|82409601|gb|ABB73710.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
Length = 358
Score = 99.4 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/356 (11%), Positives = 109/356 (30%), Gaps = 12/356 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + L + + L + + + L + +
Sbjct: 1 MKIIERYITRELLIPFMVVTVILATLFASFSMARFLAGAV-TDSLGLIPVLRLVFLKTLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V I+ L+R E+V+ R+ G+S +++ ++ +I +G+ + L
Sbjct: 60 ALEVLMPIALYVAVIMGLGRLHRDQEIVVLRSAGVSEHRIIYAVLIVAIPMGLISGLFSI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN--HIWEDF 179
+ L Q + + + + + I++ AK + ++
Sbjct: 120 FARPWAYEESYLLNAQAEAELNTDRFRAGRFYGSEKKGRVIYVQAKDSSGKQMGEVFHYL 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +L ++ L Y+ +
Sbjct: 180 NKHDSSEIILAKKAHQPELVFGQRPQIHLLDGSIYRLSHTGKGDTVVQFEKLVYFTDSGN 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ +K + + R + + + PL + + LIA S
Sbjct: 240 VTD---------YRRKAASTAALMQSDQPRDTAELQWRLSRPLATILLALIAVPFSRASP 290
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + Y + + +++ + G + V + + +I +L
Sbjct: 291 RQTKGDKTYYLAALVFAIYYILSGLAQTWVEQGTIGRVPGVWWLYAVMLLFAISLL 346
>gi|26987718|ref|NP_743143.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
gi|24982406|gb|AAN66607.1|AE016288_6 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|313497348|gb|ADR58714.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
Length = 371
Score = 99.4 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 111/349 (31%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G +I Q + + + + + + +
Sbjct: 121 APLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ R + + R + + + +P+++ +TL+A +S
Sbjct: 241 PKPEVAEEVTEREALPTSELIGKEG-------LRERAELQWRLSLPILVFVVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I T++ ++ + G L
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341
>gi|95928709|ref|ZP_01311455.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
gi|95135054|gb|EAT16707.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
Length = 395
Score = 99.4 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 121/361 (33%), Gaps = 10/361 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + + L L+ ++ + L ++ + + ++S L A +P
Sbjct: 6 LQTYISREIIAPFLLSLVLFTFVLLLSRLLKLIEMVVDK-GVAVSEILHLFACLLPSFFV 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ F L+ SE+V +A G S+++L P ++ ++L+ FT +
Sbjct: 65 ITVPLSFLLAVMLAFGRLSADSEIVAMKAAGFSLYRLSQPVLIIALLVCGFTAYLTLVAE 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+G + + + + +
Sbjct: 125 PAGRVKLKQRLIDIAYSKAAVALQPQIFNEEFDGLMMYANDVDNQTNTMTGVFISDERMG 184
Query: 185 DKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + I+ ++ + N + L+ ++ ++ ++ +
Sbjct: 185 NTPSIIVAQRGEIRSDRTNGSLLMHLRDGSIHRPVIRSGKRSYQVVDFQSYDVNLSLNTA 244
Query: 243 QFASRSFYEIIKK------MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+S K+ M + + + +V+P + L+A + +
Sbjct: 245 DKEEKSLNLKPKEMTTKALMQADPELSEEKQRERRVELMERLVLPFSPLIFALLAVPLGI 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + +F + Y +++ K+ + + + P + I + IL+L+
Sbjct: 305 RSHRS-PKGGGFSVALFIFLLYYLCLSVAKTMVQENNWPLLGSLWGPSVAFIVVGILLLI 363
Query: 357 Q 357
+
Sbjct: 364 R 364
>gi|110643218|ref|YP_670948.1| putative permease [Escherichia coli 536]
gi|47155053|emb|CAE85252.1| putative permease [Escherichia coli]
gi|110344810|gb|ABG71047.1| putative permease [Escherichia coli 536]
Length = 359
Score = 99.4 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/350 (12%), Positives = 114/350 (32%), Gaps = 2/350 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y ++ + L +L + + Y ++ ++ +P + ++
Sbjct: 7 YLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPRTLVELS 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PFI L+ IV L++ SEL R+ G SI+++ +V IL + + +A+
Sbjct: 66 PFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEWVASPL 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++ + + G+ + + + + +
Sbjct: 126 QQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLE 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ I R + + ++ ++ S +
Sbjct: 186 SYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSMPGNTF 245
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S ++ + + ++ + + + P++ +AM L+A + RS
Sbjct: 246 SVRQLNHYIHYLQETGQPSSD-YRLALWEKLGQPILTLAMILLAVPFTFSAPRSPGMGSR 304
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 305 LAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYW 354
>gi|85709344|ref|ZP_01040409.1| predicted permease [Erythrobacter sp. NAP1]
gi|85688054|gb|EAQ28058.1| predicted permease [Erythrobacter sp. NAP1]
Length = 417
Score = 99.4 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 9/361 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L A L+ + + + + + I + +P
Sbjct: 8 IDRYIFRLVIVPMLGVFALAASLLLLDKMLRLFDFVAVEGG-PIGVVFKMLGALIPEYAS 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ ++ F L +SEL RA+G+S W+LL +++L + ++ I
Sbjct: 67 LAIPLGLLLGVLLAFRKLATSSELDTMRAVGLSYWRLLRVPYAITLVLVAVNIALVFYIQ 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + +++ ++ S +
Sbjct: 127 PVSRYYYEQMEYELRSGALGASIKVGEFTTLADRMALRIERSEDDGQRLIGIFARVSNSR 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MDGFQK 239
D+ I R+ + +A + + ++ E + + L+ + ++
Sbjct: 187 DQVLSISAREGSFMATTDDPDTIILRLTEGTIVQDTGSETPRVLSFSRHDLPIDLPAVEE 246
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFYFLIVIPLMLVAMTLIAASVSLE 297
F + + Y + + + + R + F + V +M++ M L+A ++++
Sbjct: 247 FRARGEASREYILPELLRIGWSEQAEEDERDAVQAAFNYRTVEVVMMLLMPLLAVALAIP 306
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + V I + I + G + P+ A P +L I + +
Sbjct: 307 PKRSTS-ALGVFVSIILVVAYHKINQYGEDIAALGRIDPIIALWGPFCAFAALIIWMYYR 365
Query: 358 K 358
Sbjct: 366 T 366
>gi|262170557|ref|ZP_06038235.1| predicted permease [Vibrio mimicus MB-451]
gi|261891633|gb|EEY37619.1| predicted permease [Vibrio mimicus MB-451]
Length = 366
Score = 99.0 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/351 (9%), Positives = 110/351 (31%), Gaps = 11/351 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI + ++++ +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ D+ + + + L Y+ +D T + + G ++
Sbjct: 181 DSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +A+ + + + + + + +T++ +S R
Sbjct: 241 SSGRDWEALPTLSLLKN-------SDLQAQAELQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + I + ++ KS + G L + + ++
Sbjct: 294 GRFAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPVNAALLIAAL 343
>gi|206901914|ref|YP_002251684.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
H-6-12]
gi|206741017|gb|ACI20075.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
H-6-12]
Length = 362
Score = 99.0 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 119/361 (32%), Gaps = 11/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+Y F L + G + LV +I + + + S L ++P +
Sbjct: 4 KTYHKYIFSEILGPFFLGIFGFI-LVMLIQILYEFSDFIIMRRVSFETVLKLLYYKIPSL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+IP L I F L R E+ R+ GI + L ++ S+ L
Sbjct: 63 FVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFFTLALAPLLFSVFLSFVLWFFTYS 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ LIQ++ + ++ + KKI+ + +I ++
Sbjct: 123 LIPESNYRSNRLIQKYFFLNPAPVKGENIFFHD---EEGRYYYVKKIIEDKNIMQNVLVF 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGF 237
NK A+ A+ D + LK V + G +N+P
Sbjct: 180 DTSSSNKYPIIYTAEEAVWNRDSLVLKNGVVHHLGDDAFVIWEGKFEEFKINLPQDFMYI 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E+ K++ K+ + + Y I + + L+ SV L
Sbjct: 240 FYRDRTPQEMPTSELRKRIEVYKKAGV-SARSYLVENYLRIAQSVAVPIFALMGFSVILL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + I F Y I +S G+ + P +A +P I SLS+ + +
Sbjct: 299 TGRGGRLWGTAF-SIIIAFFYYGFNIIARSLGEYAVFSPFLSAWLPNITLGSLSLGVFIW 357
Query: 358 K 358
K
Sbjct: 358 K 358
>gi|121595376|ref|YP_987272.1| permease [Acidovorax sp. JS42]
gi|120607456|gb|ABM43196.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 355
Score = 99.0 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 56/355 (15%), Positives = 123/355 (34%), Gaps = 12/355 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L LL L+ V++L ++ + + + R+P + +
Sbjct: 8 YLRRRVGTQILVLLLVITALMQVLELLDVTTDVLKR-DQGFIGIVYYGLLRLPAELVMAL 66
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ ++ N+ R E+ R G+S+ +LL + + +L + ++ + +
Sbjct: 67 PPAVLLGTLMALANMARNLEIATMRTAGLSMMRLLGYLLPLAAVLAVAQFVLSDHVLPPA 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E L + W + + W S + P+ D D +
Sbjct: 127 ENG---LKEWWSASAPADDTPTKRWAHTSGGTVS----MESTSPDGRRLIDVRLYVRDDR 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQF 244
I R A A + K V E+ YG +++ + ++ + +
Sbjct: 180 GLIQSRLTATEAQWDGQVWRFKGVNEFVYGDRRVERIQVAERAWDTNLRPEDVLRLDVAR 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + ++ ++ + ++ Y PL + M L+A ++ R
Sbjct: 240 PNLSTAMLAEVIA-GTRTGTQPHRYYQSVLYRSYAAPLAIFVMLLLALPTAVSLPRGTGG 298
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+A + G I+ + G + P+ AL L ++ +L L E
Sbjct: 299 GSRMAMALILGLGFLLCDGIVAALGLAARWPPLVIALAAPALFAAIGLLQLRASE 353
>gi|256823038|ref|YP_003147001.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
gi|256796577|gb|ACV27233.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
Length = 370
Score = 99.0 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/357 (10%), Positives = 112/357 (31%), Gaps = 13/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L +T L + + + Q + S S + P++I
Sbjct: 2 ILSRYLNREVLTSTTAILGVLFAIFMSQRIVKYLAQAA-AGDISGSMVWQMVGLYSPILI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + R++G+S L+ ++ + + V +
Sbjct: 61 GFLLPLAFFLGCLLAFSRLYVDSEMAVLRSVGVSERFLIRMLAPAALFIAVVGGAVTLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + + + + Q ++ + + + + +
Sbjct: 121 SPQANELTYQIRDEHASKLELSMLTPGHFQMFQQGQGVVYADSSERSTKLGNFFLAEMPS 180
Query: 184 IDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
N + + + ++L Y+ T ++
Sbjct: 181 EMNPNTRIISAQSAERFYDESLDKNFLQLNDGHVYELDGNQQVSKVTRFERYFARLDAER 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + ++ + ++ +F++ + +P+ + +A +S
Sbjct: 241 SIVSRRKISATSTPELLASGDGAS-------WAEFHWRLAVPISVPLFMFLAIPLSRVRP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + +I + + +S + + ++ L+ +L
Sbjct: 294 REGKFAK-MLPALMVYIGYIVLIVVFRRALESEQIPGWLGFIPIYLVMAFLAARLLY 349
>gi|258622808|ref|ZP_05717826.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258584996|gb|EEW09727.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 366
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/353 (9%), Positives = 112/353 (31%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + ++++ +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ D+ + + + L Y+ +D T + + G ++
Sbjct: 181 DSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +A+ + + + + + + +T++ +S R
Sbjct: 241 SSGRDWEALPTLSLLKN-------SDLQAQAELQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + ++ KS + G L + + ++++
Sbjct: 294 GRFAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPVNAALLFAALIV 345
>gi|94984156|ref|YP_603520.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94554437|gb|ABF44351.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 352
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/357 (12%), Positives = 98/357 (27%), Gaps = 10/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L R + L+ + +++ + D + L + + + P
Sbjct: 5 PFTLTRSVLREVLRWYAAG-VALFLILQLTDALSTTVGVLLLYHATPLEALSVFGAIAPD 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + + ++ F L SEL A G+S +L+ P V +L+G+ +
Sbjct: 64 KLNRSLVLAVPFAVLLTFGRLQGDSELKAMFAAGVSPLRLVWPLAVPFVLVGVLAFVNTG 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G S A ++
Sbjct: 124 YVVPGGLARWDRAWYTIYGTVPPAPSQDNYTFAPPGA----LFYAGRVRNGAESGVAQLD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + + + + G+ P + D +
Sbjct: 180 GVLIERGGETVTAQSGIWDTQARTWTVSDAWITRPGQDPRQVAGPLVFPQT--DTLRPPQ 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A S + +++ + E Q P + L+A V L
Sbjct: 238 PPAAQVSTPVLRARLAADEYATPEQRRVDEHQLATRYADPCTPIVFALVAGVVGLLL--- 294
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
A + + Y + T + G L P AA +P I+ ++ + +
Sbjct: 295 RNRAGAFAATLLVILVFYVLWTTAPQLARVGALPPTLAAWLPNIVFFLVAAALAWRL 351
>gi|258542097|ref|YP_003187530.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633175|dbj|BAH99150.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636232|dbj|BAI02201.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639287|dbj|BAI05249.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642341|dbj|BAI08296.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645396|dbj|BAI11344.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648451|dbj|BAI14392.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651504|dbj|BAI17438.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654495|dbj|BAI20422.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 401
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/358 (13%), Positives = 121/358 (33%), Gaps = 18/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY F L L G L++++ + + + S+ L + +P +
Sbjct: 33 TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDR-GLSLRVFIELTSLLIPSFV 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P T VV++ V+ L EL + +A G+S + L + +++ I L+ I
Sbjct: 92 AVVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALARAGLGCALMATIMGFLLNLWI 151
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + ++S+ + I +
Sbjct: 152 VPTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQP 211
Query: 184 IDK------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ ++ D I+Y+ ++ + + ++S L+ + D
Sbjct: 212 GNQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDA- 270
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
A S E++ + + + + + + + PL + ++ L
Sbjct: 271 --RFRDAAEMSLGELLHP--DPQQVSERDTGKFKVEGWRRLTSPLTCFSFAMVGLVAVLR 326
Query: 298 --FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPV-AAALIPVILTISL 350
FSR + + L I ++++ ++ + AL+P ++ +
Sbjct: 327 GAFSRYGNI-KRPLAAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGI 383
>gi|90408708|ref|ZP_01216857.1| putative permease [Psychromonas sp. CNPT3]
gi|90310190|gb|EAS38326.1| putative permease [Psychromonas sp. CNPT3]
Length = 365
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 115/356 (32%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K+ L +++ I Q + L +P +
Sbjct: 2 ILRRYLMLETFKSQFGILFVLLLIFVSQKFIAILEQAIN-GVIAPDLVLTLLYLNLPTLG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L+ SE+V + G S +L ++ S F +
Sbjct: 61 TLMLPISFYLAILFAHGRLHSESEMVAMTSCGYSPNSVLKATLLLSFFTFAFASFNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A S E I +I++ + + + + S +++ + +
Sbjct: 121 APSAENEMIAVIEKAESDAGVATLIEGRFHKSSENGGVVYVEKYHEGQKLERIFASYWPS 180
Query: 184 IDKKNK--IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K I + + L+ Y + +S+ + ++
Sbjct: 181 DENKAPSVITALHGSVQEKEDGTWLTLEDGQSYTGNVGEHEFDSSRFSSYEVHIANREIR 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ ++ + + + IPL ++ +T +A ++ R
Sbjct: 241 SRSRGVSALPTSILLTQTDDKSRAE-------LQWRMAIPLSILLLTFMAVPLAKVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ + + +++ KS + G L P+ + I+ + + + L+
Sbjct: 294 GRYAKLMP-ALALYLTYFLLLSTSKSLIEEGTL-PILSIWGVQIVFLLGGVFLHLK 347
>gi|182413838|ref|YP_001818904.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
gi|177841052|gb|ACB75304.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
Length = 369
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 108/366 (29%), Gaps = 15/366 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ + +L L + L+ V L + + EL + + VP+ +
Sbjct: 5 DRHLLREWLAILGLVLCATVGLLLVQVLYDDFRDLRELGARGL-DLWMYLFVTVPMYLAL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P LV + V L+R +E RA G+S+ ++ P + + + + +
Sbjct: 64 VLPLALLVSLMFVLGKLHRANEFTALRAAGVSLLRITAPVWIVGMFACGLSWWLNTTVVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDF 179
L + + + ++ + +
Sbjct: 124 WSVDESAALRDTMRFRKESNLMPPDRVSAVYSVGFDNPRADRMWFFNRYSKWTQKAYGVT 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-------TLNIPI 232
SI + + ++ + E + + ST
Sbjct: 184 VSIMDEHRRELQRIVAEQAWFEAERGWTFRNGRELTFRPDTGELESTVPFTERVEAQFRE 243
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ S ++ + + + +++ L+ L + + IA
Sbjct: 244 DPKLMLLIDRKPTDLSLPQLRRLIDYYAIEENPKGTPYAVRYFGLVADTLAPLIVIAIAI 303
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ R I V+ I + Y I + ++ P+ AA +P I ++
Sbjct: 304 PFAVTGVRV-NAAIGVSKSIGLFMLYYIFSNIASALAAKQLVDPMTAAWVPNIGMALVAG 362
Query: 353 LILLQK 358
++
Sbjct: 363 WFFVRL 368
>gi|167032002|ref|YP_001667233.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
gi|166858490|gb|ABY96897.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
Length = 371
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/349 (12%), Positives = 111/349 (31%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G +I Q + + + + + + +
Sbjct: 121 APLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ R + + R + + I +P+++ +TL+A +S
Sbjct: 241 PKPEVAEEVTEREAIPTSELI-------GKKGLRERAELQWRISLPILVFVVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I T++ ++ + G L
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341
>gi|90580731|ref|ZP_01236534.1| putative permease [Vibrio angustum S14]
gi|90437999|gb|EAS63187.1| putative permease [Vibrio angustum S14]
Length = 366
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 114/355 (32%), Gaps = 13/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATD-GSIPSDLILTFMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +++ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGKKLLLQSALALAVITGAIAAVNSFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ--QDIFIGAKKILPENHIWEDFTS 181
A ++ L ++ K + N I K + ++
Sbjct: 121 APWSQEHIEQLKEETKAGPTLNMLVKGTFQPAPNGSGVIFIDNITDKGSKLHKVFVAQLK 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + +I + + + + + L+ Y+ ++ + T N + G ++
Sbjct: 181 ATDTLQPSVIVADNGTVKELSDGRQMLELNDGARYEGVPTQLNYSITHFNDYQALIGQRE 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + + + + + + L + + +I +S
Sbjct: 241 VKAGNRDWEAQPTMALIKDQSLAA-------KAELQWRFSLVLCIPLLVMIVVPLSAVNP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ I T+ +++ +
Sbjct: 294 RQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSAIGMWPINITTLLVALAL 347
>gi|262166531|ref|ZP_06034268.1| predicted permease [Vibrio mimicus VM223]
gi|262026247|gb|EEY44915.1| predicted permease [Vibrio mimicus VM223]
Length = 366
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/351 (9%), Positives = 110/351 (31%), Gaps = 11/351 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASIAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI + ++++ +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ D+ + + + L Y+ +D T + + G ++
Sbjct: 181 DSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +A+ + + + + + + +T++ +S R
Sbjct: 241 SSGRDWEALPTLSLLKN-------SDLQAQAELQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + I + ++ KS + G L + + ++
Sbjct: 294 GRFAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIVGLWPVNAALLIAAL 343
>gi|162148705|ref|YP_001603166.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545528|ref|YP_002277757.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787282|emb|CAP56876.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209533205|gb|ACI53142.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 377
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 115/364 (31%), Gaps = 8/364 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L RY + L + L+ ++ L E + E + + A PL+
Sbjct: 15 GVLTRYLTRELAGRILTAGAILLALMEILALLEQLTPILER-HQGLRGALYFMALHAPLL 73
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P L+ ++V+ ++ SE+ I RA G++ L+ + + LG+ L+ +
Sbjct: 74 LGSIFPLAVLIGSLVMLVHMTTASEIAILRAAGLTTPALVRLMLPAVLGLGLAATLIDDQ 133
Query: 123 IATSGE---KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ E +L + G + +
Sbjct: 134 VTPRAELALARWWNLTDPHPEAGRSFWFRSGTTLVDVGYVAQGGRELGMVDVYGRDGSGR 193
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDG 236
S + V +V+ ++ D
Sbjct: 194 LSRVAHLGGAHYANGEWTGTDARGLTVLPSEVIPAPAEPAAEAAGPMRGLGWPAGLRPDD 253
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S + ++ M S T + PL + M L+A V
Sbjct: 254 MVRLSMDTPPLAASTMVAMMRDRAPSTQPPAA-LRTALLGRALTPLTFMVMLLLAIPVVY 312
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + + +G + ++++ G +G L +AA L +++ ++L
Sbjct: 313 IPPRSGTRSWLPVWCLGAGLLFVVFQGLLQALGNAGSLPALAATLPGIVIFTFAVSALML 372
Query: 357 QKED 360
+ E+
Sbjct: 373 RIEE 376
>gi|257466752|ref|ZP_05631063.1| hypothetical protein FgonA2_04880 [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917901|ref|ZP_07914141.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691776|gb|EFS28611.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 358
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 107/355 (30%), Gaps = 4/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K + + + F++D+ + + S+ A + + VP
Sbjct: 1 MKIIDSYILKECRGPIILSVSIFTFI-FLLDIIVAMMENIIVKGISVFDIARILSFYVPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP V ++ F R+SE + +IG+ I +L P + I F + +
Sbjct: 60 ILTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I L + + +M ++ + I
Sbjct: 120 SIIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVERDKHASGILIFEND 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + S F
Sbjct: 180 EKTIFPIVL--VGHQAYWRDSSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQ 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + + + + + +P V ++++ +S+ RS
Sbjct: 238 IKVKEIEMMSIGTLLREMKGKSKEEKLIYKVEINRKLALPFSSVMLSVLGVLLSIGHQRS 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + GI + F ++ + G + + +P +L +L+ + +
Sbjct: 298 GKRA-GILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYI 351
>gi|71891829|ref|YP_277558.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71795935|gb|AAZ40686.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 357
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 126/359 (35%), Gaps = 10/359 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + +T L + L VI L + ++GE N+S + +P
Sbjct: 1 MYNILNYYIVKTVISSTTTVFLVLLSLSSVIKLIDELRKIGE-GNHSFFDVIIYMILSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ L +E + + G S Q+ + S+ + + +++
Sbjct: 60 KDFELFFPIATLLGGLLGLCMLEVHNEFIAMQISGFSRLQITLSVIKASVPVLLCSIISN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + EKI Q + + I I + + +
Sbjct: 120 EWIVPNSEKIMCMYRNQSQHDASLLSIKIKNLWFIDKNDFV----CVENVIAYNELLGVK 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS----TTLNIPIKMDG 236
+++ K+ + A+ + L V E + N + N +
Sbjct: 176 LYNFNEERKLKKICYIERAVFVDKVWHLINVNELDISQKTSVVNKNIPHSKWNAELTPYR 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S ++ + N+ Y + F+ I+ P+ MT++A + +
Sbjct: 236 LSMMITHPNFLSISKLYHCAKYFNRIGQNSKY-YQVIFWKKILSPISGSVMTIMALAFTF 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + G +GF+ Y + I + P+ ++ P I+ + +S++I+
Sbjct: 295 GPLYKKKIGIRLFVGSIAGFLFYILNQIFGILSAIHSVSPIIGSISPSIIFLVISVIIM 353
>gi|89075941|ref|ZP_01162316.1| putative permease [Photobacterium sp. SKA34]
gi|89048382|gb|EAR53960.1| putative permease [Photobacterium sp. SKA34]
Length = 366
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 115/355 (32%), Gaps = 13/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATD-GSIPSDLILTFMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +I+ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNAFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ--QDIFIGAKKILPENHIWEDFTS 181
A ++ L ++ K + Q N I K + ++
Sbjct: 121 APWSQEHIEQLKEETKAGPTLNMLVKGTFQQAPNGSGVIFIDNITDKGSRLHKVFVAQLK 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ++ + + + + + L+ Y+ ++ + T N + G ++
Sbjct: 181 ATDTLQPSVMVADNGTVKELSDGRQMLELNDGARYEGIPTQLNYSITHFNDYQALIGQRE 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + + + + + + + + +I +S
Sbjct: 241 VKAGDRDWEAQPTMTLIKDKSLAA-------KAELQWRFSLVFCIPLLVMIVVPLSAVNP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ V I T+ +++ +
Sbjct: 294 RQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSVIGMWPINITTLLVALAL 347
>gi|262401791|ref|ZP_06078356.1| predicted permease [Vibrio sp. RC586]
gi|262351763|gb|EEZ00894.1| predicted permease [Vibrio sp. RC586]
Length = 366
Score = 99.0 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/353 (9%), Positives = 111/353 (31%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + ++++ +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ + + + + L Y+ +D T + + G ++
Sbjct: 181 DSVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +A+ + + + + + + +T++ +S R
Sbjct: 241 STGRDWEALPTLSLLKN-------SDLQAQAELQWRLSLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + ++ KS + G L + + ++++
Sbjct: 294 GRFAK-MGPAILIYLTYFLTLSATKSAIEDGSLPVIIGLWPVNAALLFAALIV 345
>gi|257452883|ref|ZP_05618182.1| hypothetical protein F3_07439 [Fusobacterium sp. 3_1_5R]
gi|317059425|ref|ZP_07923910.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685101|gb|EFS21936.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 358
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 106/355 (29%), Gaps = 4/355 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K + + + F++D+ + + S+ A + + VP
Sbjct: 1 MKIIDSYILKECRGPIILSVSIFTFI-FLLDIIVAMMENIIVKGISVFDVARILSFYVPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP V ++ F R+SE + +IG+ I +L P + I F + +
Sbjct: 60 ILTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I L + + +M + + I
Sbjct: 120 SIIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVGRDKHASGILIFEND 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + S F
Sbjct: 180 EKTIFPIVL--VGHQAYWRDSSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQ 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + + + + + +P V ++++ +S+ RS
Sbjct: 238 IKVKEIEMMSIGTLLREMKGKSKEEKLIYKVEINRKLALPFSSVMLSVLGVLLSIGHQRS 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + GI + F ++ + G + + +P +L +L+ + +
Sbjct: 298 GKRA-GILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYI 351
>gi|120553894|ref|YP_958245.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
gi|120323743|gb|ABM18058.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
Length = 367
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/357 (11%), Positives = 112/357 (31%), Gaps = 14/357 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I++RY + + + L +++ + E + + R P
Sbjct: 1 MSIIFRYLIRQIMVSMLAVSGILLLVFMSGRFIKYLADAAE-GEIAAGVLFAIMGYRFPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P + ++ + + SE+ + A G+S QLL ++G++ + + ++
Sbjct: 60 FLELILPLGLFIGILLAYGRMYLESEMTVLFACGVSEKQLLAKTLLGALPVMLVVGVMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I+ G K + + + + + + ++ + + A
Sbjct: 120 YISPWGMKQVEHIFNEQRKATEFEMLAPGRFQDFTSGDRVTYTEALSDDKRQLQGVFIAE 179
Query: 182 ITIDKKNKIIHRKD----ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D K + + + + L+ +Q +D N T
Sbjct: 180 YDKDGKGVTLITAESGSQFIDEETGSRFLVLEDGGRFQGAPGRLDYNVTEFEAYGLKIVS 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + N ++ I +PL++ +TL+A +S
Sbjct: 240 GQEGSKELEEGLSTL--------ALWNSDNPEDRALLHWRISLPLIVPIVTLLAVRLSRV 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + ++ + + + L L ++L + +
Sbjct: 292 NPRQGR-FFHLLPAMLVYITYLGLLIVARDALADEKVPEWVGMLWVHALFLALGLWL 347
>gi|225619415|ref|YP_002720641.1| Permease [Brachyspira hyodysenteriae WA1]
gi|225214234|gb|ACN82968.1| Permease [Brachyspira hyodysenteriae WA1]
Length = 356
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/356 (17%), Positives = 117/356 (32%), Gaps = 6/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L LL ++LV + DL+ + E P I+ R P
Sbjct: 1 MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPEL-INYFITYHLARAPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P + + V + E++ GIS+++ P + I L +F V
Sbjct: 60 NTYYIFPVALMFSSTYVLGTFVKNKEMLAIENSGISLFKFSMPMFIIVIGLCLFLVFFWE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A K + G +Q S PW FI +
Sbjct: 120 FVAAPLNK--VSFAANDAMRGREQVSKSGPWQLFGGNNHLYFIETYFYKEQYMQNTIIVK 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D + + K + + + K N P+ + +
Sbjct: 178 LDDDGGIQFRVSSPHIQWNNEDRKWYVMDGILTTFSENKEIKVEKVNNYPLDLLERPEHF 237
Query: 242 EQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + K + + ET ++ I + L+A+ S +FS
Sbjct: 238 YGRPPLDAMSLSEESHIIKLQKEVNMNTSKLETDLHYRISYCFSGFIIVLLASLFS-KFS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + I + Y+I+ + +S G++G + AA +P I+ L IL
Sbjct: 297 TQSVLVVSLVMVIIVALLYYSILMVFRSMGEAGDINAFIAAWMPNIIFAILCILAF 352
>gi|330720162|gb|EGG98555.1| putative Permease [gamma proteobacterium IMCC2047]
Length = 323
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 108/328 (32%), Gaps = 12/328 (3%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ + G+ +Y + VP I I P L+ +++ L SEL + R
Sbjct: 3 IIDEIK--GKEGDYGTPEVLMYVLMTVPKRIYVITPLAVLIGSLLGLGMLANNSELTVMR 60
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
A+G+S+ ++ + ++L +L+ + E + G+ S W
Sbjct: 61 AVGMSVARISWAAIKPALLFVAAALLIGEFVVPHSENYAQSQRALAESRGEAVSSKYGYW 120
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
+ + + K+ A+ AI D LK++
Sbjct: 121 HRGGDTFMHFNAVLPGGVLYGVT------QYEYDDKKLTRSLFAEKAIFQGDHWVLKQIK 174
Query: 213 EYQYGRIPIDKN---STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
++ + + + + + A S + ++ + R
Sbjct: 175 HSYLSDTQVEAGEDLTLRWDTELTPEVLKVVVVDPADLSIMGLHTYTNYLKEQ-ELDAKR 233
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
F+ ++ P +V M L+A S RS V GI G + I +
Sbjct: 234 YLLAFWKKVLQPFAIVVMVLVALSCIFGPLRSVTMGYRVFAGIILGVVFRYIEDFLGPAS 293
Query: 330 KSGILLPVAAALIPVILTISLSILILLQ 357
PV A+++P+ + + ++L +
Sbjct: 294 IVFGFEPVFASIMPIAIFAIAAAVLLKR 321
>gi|332704120|ref|ZP_08424208.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554269|gb|EGJ51313.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 360
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 124/358 (34%), Gaps = 6/358 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L L + + + DL E + E + V ++PL
Sbjct: 1 MSVLSRYLLRQNLYLMSICLCLGIAVYLLSDLFERLDDFLE-AGRGLKIMLVYFLVKIPL 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II QI+P + LV +V + EL+ RA GIS +++ F+V S+ + +
Sbjct: 60 IISQILPAVFLVAMLVQLSAMRSNRELLALRAGGISYKAIISFFLVYSLFWSGGQLFISQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G + + + + I W++ N I ++
Sbjct: 120 YLGVKGLEYSKRIWAEDVRGKEYVTKTIHKLWLREDNDILHIDTVQPASGKGRNLSIYTL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + I+ K + + + ++ +L K +
Sbjct: 180 AQDRRSVVQFINAKTFEAKEGNWVLNDVIIIDPIRFTSEYKPTLKLSLGEAFKSFTLAES 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A +E+ + + + + T ++ + + M L+A ++ +
Sbjct: 240 RNNPAQLPLWELGRAIHQLEVTGS-NVEGLRTIWHGKLSYAFSITIMALLALAII---TF 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + G+ + F+ Y + S G+ G L P+A A + + I + L +
Sbjct: 296 EHNVYLNLTAGLVATFLFYGFFVLGSSAGEMGFLPPIAGAWLGNAVFILGATTRLFWR 353
>gi|323492969|ref|ZP_08098107.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
gi|323312800|gb|EGA65926.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
Length = 367
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/351 (11%), Positives = 110/351 (31%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S A +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAGFNSFVF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + L ++ + + + +FI H++
Sbjct: 121 SPYSQDKLVQLQEEVEAENSVDLLKKGHFQGTPDGSSVVFIDDIDGKQLKHVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ +Y +P + + +
Sbjct: 181 DSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTKFDQYEGLIGQRDVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + RA+ + + I + + + +T++ +S R +
Sbjct: 241 RKGRD----WEAIPTLELMKNPD-PRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I + I+ KS + G + + + +I I
Sbjct: 296 FAK-MGPAILIYLAYFLSISATKSALEDGSIPAIIGMWPINAALLLTAIGI 345
>gi|51245020|ref|YP_064904.1| hypothetical protein DP1168 [Desulfotalea psychrophila LSv54]
gi|50876057|emb|CAG35897.1| unknown protein [Desulfotalea psychrophila LSv54]
Length = 362
Score = 98.6 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 5/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + K L G + L +ID E + E +S +P I+
Sbjct: 3 LLNRYLLGQFFKFFLTVAAGFIALYLLIDFFEKFDNFTE-AGKPLSVVIKYFLFSIPAIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P + L+ ++ LN ++EL +A G+ + ++ P ++G + + + I
Sbjct: 62 DQLGPILILLSGVISLGVLNSSNELTALKAGGLPLRAIIRPIIIGGGAVTLLFMASAQWI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
S + D+ + + K ++S
Sbjct: 122 LPSTVAVTNDIWIEGVQGKTPVGIVRNNRYYYHGQEGFYSFAWKNNKEYLFANFSYSSWD 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K + + + LK E + S + P + F+
Sbjct: 182 KEYGLKEMISATSASWDAKQNSWLLKGGVLQQQESRGSYTTTTFTSRKFHFPETPEAFRT 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ RS ++K + + ++ + + + + +
Sbjct: 242 PQHAESERSLSALLKGALNNQIAFEAEEAWGLFLGRISYILLGLPLLLLGLPILLLSYQK 301
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
I + F + + ++S +G P AA + + I+L + +L + +
Sbjct: 302 WGKDLSIAIPASCTMAFSAWAVWGALQSLAIAGKFSPWLAAFLIHAIFITLGLYLLRRFD 361
>gi|126667525|ref|ZP_01738495.1| predicted Permease [Marinobacter sp. ELB17]
gi|126627951|gb|EAZ98578.1| predicted Permease [Marinobacter sp. ELB17]
Length = 382
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/355 (10%), Positives = 112/355 (31%), Gaps = 14/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + + + + +++ + E S + A R P +
Sbjct: 15 IIFRYLIRQIMISMIAVSTILLMVFMSGRFLKYLGNAAE-GEISAGVLFSVMAYRFPGFL 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+ + A G+S +L ++GS+ + + + +
Sbjct: 74 ELILPLGLFIGILLAYGRMYLESEMTVLLACGVSEGDILRQTLIGSLPVMLVVAAMSLYV 133
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G K ++ + + + + + ++ + +
Sbjct: 134 SPWGMKQVEEIFNEQRKATEFELLAPGRFQDFTSGGRVTYTEGLSDDKRELQGVFIAEFG 193
Query: 184 IDKKNKIIHRKDADLA----IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + I + + + LK Y +D N+T K
Sbjct: 194 KNGEGLTIITAETGTQLVDAQTGSRFLILKNGGRYAGNAGQLDYNTTEFEAYGLKIVSGK 253
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++ + ++ +P ++ +TL+A +S
Sbjct: 254 SGTKELEEGLS--------TGQLMKSNDPQQRALLHWRFSLPFIVPVVTLLAVRLSRVNP 305
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + ++ + + G + L ++L + +
Sbjct: 306 RQGR-FFHLLPAMLVYITYLGLLIVARDALADGKVPEWIGMFWVHGLFLALGLWL 359
>gi|329114150|ref|ZP_08242912.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
gi|326696226|gb|EGE47905.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
Length = 401
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/358 (13%), Positives = 122/358 (34%), Gaps = 18/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY F L L G L++++ + + + S+ L + +P +
Sbjct: 33 TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDR-GLSLRVFIELTSLLIPSFV 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P T VV++ V+ L EL + +A G+S + L + +++ I L+ I
Sbjct: 92 AVVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALAKAGLGCALMATIMGFLLNLWI 151
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + ++S+ + I +
Sbjct: 152 VPTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQP 211
Query: 184 IDK------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ ++ D I+Y+ ++ + + ++S L+ + D
Sbjct: 212 GNQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDA- 270
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
A S E++ + ++ + + + + + PL + ++ L
Sbjct: 271 --RFRDAAEMSLGELLHP--DPQQVSVRDTGKFKVEGWRRLTSPLTCFSFAMVGLVAVLR 326
Query: 298 --FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPV-AAALIPVILTISL 350
FSR + + L I ++++ ++ + AL+P ++ +
Sbjct: 327 GAFSRYGNI-KRPLAAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGI 383
>gi|330504705|ref|YP_004381574.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
gi|328918991|gb|AEB59822.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
Length = 374
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/361 (11%), Positives = 118/361 (32%), Gaps = 15/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGYRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + ++++ + + +
Sbjct: 61 QLILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G ++ + + + S ++++ P+
Sbjct: 121 APQGVASVARILSEQDALTELDTLVPGRF--QSLRDGSRVTYSQELSPDRSELRGVFMSE 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + +++ R I +N + ++
Sbjct: 179 KRFSTDGRSERGITVLVAESGRQEIQD----DGSRYLILENGYRYDGEPGEADYRAIQYD 234
Query: 244 FASRSFYEIIKKMSFSNKSNIF-------HNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + R + + + + +PL++ +TL+A +S
Sbjct: 235 TYGVLLPKPEVAIEASEREATPTRELLGSSDPRMQAELQWRLSLPLLVFIVTLLAVPLSK 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + IF ++ + G L + +++ +L+L
Sbjct: 295 VNPRQGR-FLKLLPAIFLYMAYLGLLIAARGALDKGRLPAALGLWWVHGIFLAIGLLLLY 353
Query: 357 Q 357
Sbjct: 354 W 354
>gi|296125162|ref|YP_003632414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
gi|296016978|gb|ADG70215.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
Length = 356
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 68/356 (19%), Positives = 120/356 (33%), Gaps = 6/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L LL ++LV + DL+ + E P I+ R P
Sbjct: 1 MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPEL-INYFITYHLARAPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P + + V + E++ GIS+++ P V I+L + V
Sbjct: 60 NTYYIFPVALMFASTYVLGTFVKNKEMLAIENSGISLFKFSMPMFVIVIMLCLILVFFWQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A K + G+KQ S PW FI +
Sbjct: 120 FVAAPLNK--VSFAANDAMRGNKQASKSGPWQLFGGNNYLYFIDTYFYQEQYMTNTILLK 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D K + K +K + + + N P+ + +
Sbjct: 178 MNDDGGIKFRISSPYIQWNNDDKKWYVKNGILTTFSENKEIEVKEINNYPLDVLERPEHF 237
Query: 242 EQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + K + R ET ++ I + L+A+ S +FS
Sbjct: 238 YGRPLLDSMSLTEEAHIIKLQKEVNMNTSRLETDLHYRISYCFSGFIIVLLASLFS-KFS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + I + Y+I+ I +S G++G + P AA +P I+ L IL
Sbjct: 297 TQSVLVVSLVMVIIVALLYYSILMIFRSMGEAGNMNPFIAAWMPNIIFAILCILAF 352
>gi|82701537|ref|YP_411103.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
gi|82409602|gb|ABB73711.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
Length = 354
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 122/358 (34%), Gaps = 10/358 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY L + L +DL + + +G+ YS+ + A +P
Sbjct: 3 IIYRYLGLQVLMGLGIATAVLLPLFGFLDLLDQLDDVGK-GTYSVKDAFLYTALLLPRRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ PFI L+ N+ L SEL R G+S + VV I+L +F ++ +
Sbjct: 62 IQLAPFIALMGNVTALGRLAVGSELTALRGAGVSPLGISLAPVVVGIILLLFITVLDQFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ I + + W + + ++L
Sbjct: 122 APQFQQKAISSRAAALEKSAALGQQLGIW----TRDERNILRIGEMLHARRAANIEIMHF 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKF 240
D + + II +L+ VV + ++ + S +K +
Sbjct: 178 DDNGFLLRYTYAKYADIINEGLWELRDVVIKTFNGNAMEIVSRESVPWEPFLKEEDISTL 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ S S E+ + F + E + L +AM L++ R
Sbjct: 238 TKSPESLSPAELFLHVHFLRATGQESGA-YELALWRKAGGALTTIAMLLLSIPFVFGSVR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G +Y I + G L P +AL+P + I+++ L +
Sbjct: 297 AG-LGNRLVVASMLGISVYLFDQITANAGLLLHLNPALSALLPGGVLIAVAYFWLRRI 353
>gi|332187157|ref|ZP_08388897.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
gi|332012857|gb|EGI54922.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
Length = 399
Score = 98.2 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 123/361 (34%), Gaps = 12/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + L+ A +L+ + + + + IS + A +P
Sbjct: 1 MKSIDRYMARLIALPLFATLIIAAMLLVLDRIRRLFEFVATEGG-PISVVWRMLANLLPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP ++ ++ F L +SEL + R +G+S +LL + +I+L + ++
Sbjct: 60 YLGLGIPIGLMLGILLAFRRLATSSELDVMRGVGMSYTRLLRVPYMYAIVLAALNLAIVG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-------QQDIFIGAKKILPENH 174
+ L + + + + + N +D I +
Sbjct: 120 YVQPIARYYYEGLRYELRTGALGASIKVGEFTHLGNRMTLRIEESRDSGRDLSGIFVHAN 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-IK 233
+ ++ + + D ++ I L + +S L I K
Sbjct: 180 TSKGDWIGVTAERGRFLATDDPNVIIFRLTNGTLIHNRPEFRAPRVLTFSSHDLPIDLPK 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D F++ + + E+ K + + RAE +F +V + + + L+A S
Sbjct: 240 FDNFRQRGGRDLEFTLPELAKLGHEAPSAEARAGSRAEF--HFRLVEVVTMFLLPLLAVS 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + RS + V I + + G G + P+ A +P + L
Sbjct: 298 LGIPPKRSTS-ALGVFLSIVMLVTYHKVNQYAADIGALGRVDPLIALWVPFAIFAGLVGW 356
Query: 354 I 354
+
Sbjct: 357 M 357
>gi|237799873|ref|ZP_04588334.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022728|gb|EGI02785.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 375
Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAISAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + + SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRMYLESEMTVLAATGMSQQRLLAMTMGPAALVGLVVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHI 175
A G LI Q + + + + + + +
Sbjct: 121 APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLGGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S + + ++ + + L+ Y D +
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ SE+ R + R + + I +PL + +TL+A +S
Sbjct: 241 PKPEISEEITDREAIPTSE-------LFGSSTPRNVAELQWRISLPLSVFIVTLMAIPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + I I+ ++S + G L + + + +++
Sbjct: 294 RVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLCIGLVLF 352
Query: 356 LQ 357
Sbjct: 353 YW 354
>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 388
Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/358 (12%), Positives = 121/358 (33%), Gaps = 13/358 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + +++ S A +P +I+
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFFEFTALSLPNLIRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P ++ V LN SEL + RA G S WQ+ P + I+ I ++ + +
Sbjct: 64 VLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKPALAFGIITAIMMSILTHFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA------KKILPENHIWEDF 179
+ + N + ++ + + + D
Sbjct: 124 TSIATLEQRETEISRNVTAKLLSEGDFLHPTRGVTFYIGRIDPDGTLNDVFLSDRRNPDQ 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K ++ +D ++ + + + + + + +I + ++
Sbjct: 184 VVTYTGGKAYLVRDEDRTHLVMVDGMSQRIDMQTRRL--SSTIFSDFSYDISSLANKAEE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--E 297
+ + E+++ + + + + L+ VA+ LI S +
Sbjct: 242 KTRNIRAIPSLELLQDRARLIAEGPYSAGALAEELHLRFARALVCVAVALIGFSALMVGG 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR R + + F+ + + ++ + P+ +P + ++ +++ L
Sbjct: 302 FSRFGVWRQALVAFVLLIFVEGLRGVVSEPVLENADMWPLI--YLPTAVGLAAALIFL 357
>gi|320451335|ref|YP_004203431.1| hypothetical protein TSC_c22800 [Thermus scotoductus SA-01]
gi|320151504|gb|ADW22882.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
Length = 347
Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/346 (13%), Positives = 101/346 (29%), Gaps = 12/346 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L L ++L + E+ + + R P
Sbjct: 1 MKTLDRYLLREVLAHFSLGLAVIVLLFLAGAVYEVLAPLVAK-GADPYTLLLYLFYRTPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P L + + L SEL A+GI ++L P + LL + L+
Sbjct: 60 ALVRGAPVAYLFALLFLLSRLGEDSELKALLALGIRRERVLLPLLGLGALLALLGFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G DL+++ + Q + + +
Sbjct: 120 SLVPKALAQGQDLLRRQVLERPRALLTPGTTFQDARGRVVYVGEVARDRIGKLRILSQEE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + ++ + T
Sbjct: 180 VVLAEEGRFQGGVLQVEKGLRVTYEGDRPRTLTRFQEGELVLRDLTFEPWQNPA------ 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ +++ KS + T +Y P + L A ++
Sbjct: 234 ---NRMTLKELKEEVERLRKSGVKAGLE-ATTYYRRYAEPAASLVFALFATGLAFYLLGG 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
++ +V + + F Y ++ + G+ L P+ AA P +
Sbjct: 290 SRSLGLVGVAVLTFF-YYATWSVGRIMGEQNALDPILAAWGPNLFY 334
>gi|261253953|ref|ZP_05946526.1| predicted permease [Vibrio orientalis CIP 102891]
gi|260937344|gb|EEX93333.1| predicted permease [Vibrio orientalis CIP 102891]
Length = 368
Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/353 (11%), Positives = 113/353 (32%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S A +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGLIAGFNSFYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + L ++ + + + +FI H++
Sbjct: 121 APYSQDKLVQLQEEVEAENSVDLLKKGQFQGTPDGSSVVFIDDIDGKQLKHVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + ++ Y+ +D T + + G +
Sbjct: 181 DSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTEFDQYEGLIGQRDVQ 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + M + RA+ + + I + + + +T++ +S R
Sbjct: 241 RKGRDWEALPTMDLMKN-------PDPRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + I+ KS + G + + + ++ I
Sbjct: 294 GRFAK-MGPAILIYLAYFLSISATKSALEDGTIPTMVGMWPINAALLLTALGI 345
>gi|317153285|ref|YP_004121333.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943536|gb|ADU62587.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 388
Score = 97.8 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 130/364 (35%), Gaps = 12/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R FK LK + + L+ + + + N L P
Sbjct: 1 MKLLHRQIFKELLKLFGLTVACLLGLILIGRML-QLRSLFLSQNIGFFNILQLFFYLTPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I P T++ + F ++ +EL +A G+S++++L + +L +FT +
Sbjct: 60 FLLLITPIATMLSVFLTFLRMSTDNELTALKANGVSLYRMLPAPIAFCVLCTLFTFFISM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK-------ILPENH 174
G + + Q+ + + + + + +
Sbjct: 120 WGLAWGMDMFKTSLYQFARSHSRFALQPGVFNKEFPGITFYAHQVDNDTGELKFVFVRDQ 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + + +I+ I +K ++ + + S L++ +
Sbjct: 180 SISGASVVVVAPEARIVSSPKTAEVHIVFNKGRIYRQSGEDINILRFGSYSVRLDLGKLL 239
Query: 235 DGFQKFSEQFASRSFYEII---KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
F E+ +F + S + + + +T++Y + +PL + + + A
Sbjct: 240 GDFSFSEEKAKDMTFAALREIRNDPSIAPQQTAQFLRKVDTEYYKRLTLPLGCLILGMFA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ F R + + + + + Y++ ++ S G++G + PV P IL + ++
Sbjct: 300 IPIAYVF-RGLRQQYGLLLSMGLFLLYYSMFSLSVSLGEAGAIAPVYGLWAPNILYVLVA 358
Query: 352 ILIL 355
+ +
Sbjct: 359 VFGI 362
>gi|58038773|ref|YP_190737.1| hypothetical protein GOX0298 [Gluconobacter oxydans 621H]
gi|58001187|gb|AAW60081.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 390
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 107/359 (29%), Gaps = 12/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L L GA L+++ + + + S+ L + +P I
Sbjct: 15 LLDRYILRQLLIALLALTGGATALIWLTQSLHFVSMVVQ-HGLSLRVFIQLTSLMLPSFI 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P T +V + + + EL + RA G S +L P ++ + + ++ +
Sbjct: 74 AVILPITTFLVVLFTYQRMVGDRELTVMRAAGRSPLELARPGLLCAFFSVVLCYVLTLWL 133
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A Q ++ + +SN G + + +
Sbjct: 134 APVSYHAFHRYEFQIRNRMAAFLLQDGVFTSLSNDMTVYVRGRTSDGQLHGVLVEDDRDP 193
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDGFQK 239
+ R + +V L + R N T
Sbjct: 194 DSHTTILAERGTMVVVNDQP-RVVLYDGSREEIDRHTGRLNVLTFGRNTIDLTSSRQHNH 252
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE-- 297
S E+ ++ + + + + PL ++ +I L
Sbjct: 253 EDRDPDEMSLRELFHP--DPHEVSERDRGKNIVVGWRRLTSPLTALSFAMIGLVTVLRGA 310
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
FSR + I + L I ++++ L V + IL + +L
Sbjct: 311 FSRHGNITRPL-IAILTVVGLLAISLMLQNLAGR-HLALVPLIWLEAILPAVVCAAMLF 367
>gi|296283030|ref|ZP_06861028.1| permease [Citromicrobium bathyomarinum JL354]
Length = 407
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 120/356 (33%), Gaps = 9/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ + + A L+ + + ++ + + + T +P
Sbjct: 7 LDRYIFRLTIVPMIGVFALAATLLMLEQMLKLFRFVSTEGG-PVGVVFQMLGTLLPDYAV 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ + F L +SEL + RA+G+ +LL ++ L ++ +
Sbjct: 66 LAIPLGLLLGTLFAFRQLALSSELDVMRAVGLGYGRLLRVPFAITLALMAVNAAIVFYVQ 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +L + + + +++ ++ + +
Sbjct: 126 PVSKYYYEELQFDLRSGALGASIKVGEFTTLADRMALRIEESEDSGRKLKGIFARINAED 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MDGFQK 239
+ I R+ L+ N + ++ + + P + L+ + ++
Sbjct: 186 GQTLSISAREGRFLSTSDNPDTIILRLSDGTIVQDPPGETPRVLSFTEHDLPIDLPAIEQ 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLE 297
F + + Y + + + R ++ F + +V M++ M L+A ++++
Sbjct: 246 FRARGEAEREYILPELLRMGWSDTTTEAQRLGSQASFNYRMVELAMMLFMPLLAVALAIP 305
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V + + + M+ F G + P P + L +
Sbjct: 306 PKRSTS-ALGVFVAVILVVAYHKVNQYMQDFAALGRVDPTLGLWGPFAIFAGLILW 360
>gi|218778207|ref|YP_002429525.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759591|gb|ACL02057.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 398
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/364 (13%), Positives = 123/364 (33%), Gaps = 13/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y L LL ++ + + ++ + + + +L +P +
Sbjct: 6 IVFKYMLGEMLPPFGVTLLVFALIFLMTRMLQLTDYVVNFR-VGLGHVMMLLMYSMPFFL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP T++ ++ F ++ +E+ +A G S++ LL P + + T +
Sbjct: 65 IFVIPMSTMMAVLLTFLRMSSDNEITALKAAGWSLYSLLPPVLAFCTAAALLTASMSFIG 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---------FIGAKKILPENH 174
G +L+ + + + + I
Sbjct: 125 LPWGRMAAKELLIDVARQNVEIGLKERSFERTFKNVVLYVGSVDVESRTLHHVFIEDRRD 184
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T + + D + + + + + D LN+ +
Sbjct: 185 KQLSSTIMASTGRIIPSDGDDIWQLRLNDGVIVRADRKKSSMFTVNFDSYDFNLNLGTAL 244
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + F E++ + NK + + A + + IP + + L A +
Sbjct: 245 GA-RDGEKDEEEMYFKELLTFVKRYNKKDDRYYL-ALLEVHKKFSIPFSCIVLGLAAVPL 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ SRS + VA G+ + Y +++ FG++G P+ +P ++ ++
Sbjct: 303 GIV-SRSARRSFGVALGLGLFLLYYLLLSAGWVFGEAGKYPPMIGMWVPNLVIGAMGGFS 361
Query: 355 LLQK 358
L++
Sbjct: 362 LVRM 365
>gi|330813915|ref|YP_004358154.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487010|gb|AEA81415.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
Length = 375
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 66/364 (18%), Positives = 140/364 (38%), Gaps = 12/364 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-NYSISRGAVLAATRVPLIIQQI 66
YF K ++ + L L L +I+ + + I +L + P I ++
Sbjct: 12 YFSKEFIFSLLLVFLVFFSLSLLINSVGELIYLKDKKLENVIWMATILTLAKTPTTIIEL 71
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
FI L I+ F + + +E+ GIS + + S + G+F + + I+++
Sbjct: 72 SIFIFLFSGILFFVKIQKNNEVNTMLLAGISKTLPILIPSIISFICGLFIIFFLTSISSA 131
Query: 127 GEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKIL-PENHIWEDFTSITI 184
+ + ++ + + W + I A KI +I + T +
Sbjct: 132 SLNFYEQEKRIYSSNDNLIVMNKMGLWFMENTTSGYNIIRADKIEKNNFNILNNVTIYNL 191
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN--------STTLNIPIKMDG 236
D+ + R D++ I + L K Q + D + + I ++
Sbjct: 192 DQGFNFVKRYDSEKITINQKRWSLNKTQVTQEKKSLSDSKKDNDASLVEMSFDSSININD 251
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + SF+E+ K + N + +F+ + +P L AM L++ + ++
Sbjct: 252 LKNYFTDVNTVSFWEMFKTIKTLNSRG-YSAEELRVKFHKYLSLPFYLFAMILVSTTFTM 310
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ + + +G G +Y + + SFG S L + PV L I LS + L+
Sbjct: 311 GANKQYNTFMYLFFGTILGVCIYFLNDLSISFGLSNKLPLAISVWSPVGLIIILSTINLI 370
Query: 357 QKED 360
+ +
Sbjct: 371 RINE 374
>gi|297172254|gb|ADI23232.1| predicted permeases [uncultured nuHF2 cluster bacterium
HF0770_13K08]
Length = 351
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 125/360 (34%), Gaps = 18/360 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + FL +++ V + + S + A +PL
Sbjct: 3 FKIISKYIASEFNRYFMLFLGAFVLMSLVGNFFGNLADVFTDW-QSFLKFLQETALLLPL 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++ IIP L+ I + +LN+ +EL+ R+ GI W+L P + S L+ F N
Sbjct: 62 LLELIIPITVLLATIATYSSLNKNAELLAIRSSGIGGWRLAFPVLAVSALIASFAYFSQN 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI----WE 177
+ T + + + + + N Q + I + I
Sbjct: 122 YMYTWMHQTWVKQENSARLPPLWKVGEEQSIYYFGNRQHNGRISSITSFNWKQIPFQLLG 181
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+++N D I ++ ++L+ V +++ + + I
Sbjct: 182 RTAIERGEQQNNSWIFHDIQKYIFQDENLRLEHVEQWRIETEKLPTVPFDIPISPHHQPL 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E +S R + P + M LI +S
Sbjct: 242 LDLYENTLKL-------------QSEGQDVTRYWVAIFQKTAYPFQIFIMVLIGLGLSAS 288
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++R +A G + + + I + G +G++ P AA I+ ++L++ +L
Sbjct: 289 YNRRGMAAESLAISCLLGILFWILNQITMAVGGAGLIFPFFAAWSGNIIFLALALWLLSY 348
>gi|56461047|ref|YP_156328.1| permease [Idiomarina loihiensis L2TR]
gi|56180057|gb|AAV82779.1| Predicted permease [Idiomarina loihiensis L2TR]
Length = 363
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/349 (14%), Positives = 113/349 (32%), Gaps = 12/349 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
LK+ L L M + + + E + + L + +P ++ I+P
Sbjct: 1 MISETLKSQLAVLFILMTIFVSQKFVRVLSDASE-GDIPGAIIFQLLSLNLPALLSLILP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + +E+ + A G+S W + +V S++L I T +
Sbjct: 60 LSLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVLSLILAIITASFTLWLVPWSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQ---ISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + Q +G + L E + + +
Sbjct: 120 DQEQKLEDKARSESGLTALMPGRFQQASNQKAVIFVQRVGDEGDLEEVFVAQHTHNQGEL 179
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ ++ K + L+ +Y + + Q+ SEQ
Sbjct: 180 QSGSVVMAKTGKVISETTGSQWLELGQGKRYAGDDDSYQMMSFDSYQLQIKEQQASEQLR 239
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
Y ++ +S + I + I IPL + +TLIA +S R +
Sbjct: 240 KLEAYPTVELLSRKEPAAIAE-------LQWRIAIPLAMPLLTLIAVPLSRVNPRQGKFG 292
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+A + + ++ KS + G++ P+ + + + +
Sbjct: 293 -RMAPALLIYLGYFLLLMAAKSAIRDGVIPPIIGLWWIHFILLIFGLAL 340
>gi|320335464|ref|YP_004172175.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319756753|gb|ADV68510.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 379
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/382 (12%), Positives = 103/382 (26%), Gaps = 33/382 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L ++ L N +VP +
Sbjct: 2 ILTRYVTRELLPPLLAGTALFTAILSFGYFF---VSSQWLKNVPPGLILQWIGAQVPDTL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P +++ +V F L EL+ ++ GIS+ ++ P V + L+ + V + +
Sbjct: 59 VKVLPMGVVLMVVVAFGRLATERELIAVQSGGISLGRVARPATVIAALVAVLAVWLSLWV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A L G + +
Sbjct: 119 APRLNVEARGLYWDTLTGGGLTTLSGRTTDLGGGLTLYLGGYDSATRRMTGVRVQQWDKD 178
Query: 184 I-------------DKKNKIIHRKDADLAIIYNDKVKLKKV-------------VEYQYG 217
+ N++ R A + + L+ V V
Sbjct: 179 NAELGTLVFARDGTFENNQLQLRDYAVYRVNFAAVRDLEAVSDDPSKLRSAIGDVFTAVN 238
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFY 275
P + TL+ + + ++ + R
Sbjct: 239 TPPNKDATLTLDTGLSRKETLARYADAIGADSEGWPQLITKLTAPGVKAADRQAARVDLN 298
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P+ + + L A +L + R + + Y + + + L
Sbjct: 299 RKLALPIGNLVLVLAALPFALRYGR--TLGTSLGIALLIAVAYYLLFFVGIAVANMLPAL 356
Query: 336 PVAAALIPVILTISLSILILLQ 357
P + ++ +L + +L +
Sbjct: 357 PELGVWLANLVFAALGLTLLRR 378
>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
Length = 358
Score = 97.5 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 123/357 (34%), Gaps = 15/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L + + G + + F+ ++ + + M +L N + +P
Sbjct: 5 ILSRYIMRSMLLPFVCCICGFIFIFFIANVQDDLSDMLKLDNT--KDIIIYYFLLIPDKF 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I P L+ I F +LNR E++ R+ G+S+ + + I L V + +
Sbjct: 63 TYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTK-----LSAPIYLFSVLVGISLYL 117
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + L + + + + E++ + +
Sbjct: 118 SSQYLEPYCRLKTFELNTRAESMDRSHEFHIFTAFDGKQKRKWAVSSDEDNNFSAIQILE 177
Query: 184 IDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDK------NSTTLNIPIKMDG 236
D+ N + +A ++ K V ++ K N +I
Sbjct: 178 YDENNNLTREIEALSGEFNSEIGWNFKNVSIAEFSEDHRIKKIEKHDNYLRNDIKDDPII 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + S +I +++ + ET+ Y LI P + L+ ++
Sbjct: 238 LSNIDELKGTPSIAQIKSELNSGRPVDTKRKAFLETRQYSLIFSPFSCLIGVLLGIPLAT 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + I + Y I + + G++ IL P+ AA I + IS +
Sbjct: 298 SSQRSPGMSAA-SRAIGIMLVYYIINSAFTNLGRNDILPPMMAAGIGTFIFISFGLF 353
>gi|331007487|ref|ZP_08330658.1| putative permease [gamma proteobacterium IMCC1989]
gi|330418711|gb|EGG93206.1| putative permease [gamma proteobacterium IMCC1989]
Length = 408
Score = 97.1 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 109/354 (30%), Gaps = 3/354 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ RY K L+TT +I++ + + + R+P
Sbjct: 28 PMIIPRYLTKEVLQTTFAVTSVLLIIIMSGRFVKYLAEAA-AGKIDARVLFAVMFYRLPG 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P V ++ + L SE+ + + G+S QL+ + + ++ I +
Sbjct: 87 FMELILPLGFFVSILLAYGRLYTDSEMTVLFSCGVSRKQLIAWTYIPAGIVLIIIATLSL 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ Q + D + + N + E +
Sbjct: 147 WLTPLGLHEAEKILAQQQARNDFETMQEARFQVSRNKSLVSYTEDISDNREQLNAFFLAN 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + +V + R + I + Q
Sbjct: 207 MNVGADEPLMTVRSEVAEYKILGETDQRYLVLKRGARYEGQPGTANYRITEFEEFGQHVD 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + ++ + + + PL+++ +TL+ S R
Sbjct: 267 PKGEIAVTNNKVNRLPTVELLGS-DLPDYQAALQWRLSSPLVVLIVTLLGVLFSHTNPRR 325
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ ++ I + ++ + + L + L+I +L
Sbjct: 326 GRYA-MLFPAILLYLIYLVLLNSARGAVEEQRLSSAIGLWGVHFMFFVLTISLL 378
>gi|312959168|ref|ZP_07773687.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
gi|311286938|gb|EFQ65500.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
Length = 372
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 117/356 (32%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + + + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALVMAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + + + + + + +
Sbjct: 121 APQGAMQFQLLLNKQDAMTEFDTLEPGRF--QALNDGTRVTYTETMTDDRANLGGVFISQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ R + L + Y + + + + +
Sbjct: 179 KNQGENQKDRGISILVADSGRQEVRPDGSRYLVLENGYRYDGSPGLADYRAIKYDTYGVM 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A E + +++F R+ + + I +PL++ +TL+A +S R
Sbjct: 239 LARPDISEEVTDRDALPTASLFGSQELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I T++T + + ++G V + +++ + +L
Sbjct: 299 GR-FLKLLPAILLYMTYLTLLTYARGWLENGKTPLVLGLWWVHAIFLTVGLALLYW 353
>gi|217966587|ref|YP_002352093.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
gi|217335686|gb|ACK41479.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
Length = 364
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 121/361 (33%), Gaps = 11/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+Y F L + G + LV +I + + + S L ++P +
Sbjct: 6 KTYHKYIFSEILGPFFLGIFGFI-LVMLIQILYEFSDFIIMRRVSFEVVLKLLYYKIPSL 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+IP L I F L R E+ R+ GI L ++ SILL +
Sbjct: 65 FVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFLSLTLTPLLFSILLSLILWFFTYS 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ LIQ++ + ++ + KKI+ ++ ++
Sbjct: 125 LIPESNYRSNRLIQKYFFLNPAPIKGENVFFHD---EEGRYYYVKKIIENRNVMQNVLVF 181
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGF 237
NK A+ AI D + LK V + G +N+P
Sbjct: 182 DTSSSNKYPIIYTAEEAIWNRDSLILKNGVVHHLGDDSFVVWEGKFEEFKINLPQDFMYI 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E+ K+++ K+ I + Y I + + L+ SV L
Sbjct: 242 FYRDRTPQEMPTNELKKRINVYKKAGI-SARSYLVEDYLRIAQSIAVPIFALMGFSVILL 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + I F Y I +SFG+ + P +A +P I SLS+ + +
Sbjct: 301 TGRGGRLWGTAF-SIIIAFFYYGFNIIARSFGEYAVFSPFLSAWLPNITLGSLSLGVFIW 359
Query: 358 K 358
K
Sbjct: 360 K 360
>gi|94987323|ref|YP_595256.1| permease [Lawsonia intracellularis PHE/MN1-00]
gi|94731572|emb|CAJ54935.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
Length = 366
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 73/358 (20%), Positives = 146/358 (40%), Gaps = 11/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L+RY K K L L + + + DL E + E + S + P
Sbjct: 1 MSLLFRYLIKNNTKILLLTLTIGIGVYILTDLFERLDNFIE-AHTSTKIILTYFIYKTPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I QI+PFI L+ ++ + + EL+ +A GIS ++ + ++ S+ G +
Sbjct: 60 AIAQILPFIFLISTVIQLCIMAKKKELIALQAGGISFTRIASIIIIASLFWGTIQFIFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I T+ + + + Q++ N Q I ++ + + P++
Sbjct: 120 YIGTACGRKSLQIWQEYVHN---QHKSKTILKDIWFTDKNWIVSINTLKPDDTGSGFSAY 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+ I A I+N++ LKKV + Y + + + + T N + F
Sbjct: 177 LLDKNGLTIEKIIWALSFSIHNNEWILKKVAVSEPALYSQEMLQELTLTFNQSSETLKFI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + SF+E+ + + +S + +T ++ + LV M L+A ++
Sbjct: 237 QNNNAPQQLSFWELRETIHKLERSGS-NVELLKTSWHTKLSYSFSLVVMALLATTIV--- 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ N I +A+ + F+ + TI S G GI+ P+ A I ++ +S++I L
Sbjct: 293 AWKNNIYIAIAFSLLYTFIYNALNTIGISLGNKGIISPIIGAWIANLVIMSVTIWKLF 350
>gi|281356604|ref|ZP_06243095.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
gi|281316731|gb|EFB00754.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
Length = 419
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/419 (11%), Positives = 107/419 (25%), Gaps = 65/419 (15%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L Y + +L LL +IL + D+ + E S ++P
Sbjct: 1 MPK-LDGYILREFLIKYSVLLLVFVILFILSDVYRDISDFLEAK-ASYRSILQYLGYKLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P L+ + + E+ RA G+S+++ V +++ +
Sbjct: 59 GNVRFILPISMLLGCMWTMATFGKNMEITAMRASGVSLFRCGGSIFVVGLIVTAVNIYFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E+ ++ + D ++ + +N + F
Sbjct: 119 EALVPYTERRAEEIRSEVADGRKYVQNLLTYRSTDQQRHWLFKTFTTDEAQQNVTVKTFW 178
Query: 181 SITIDKKNKI-------------------------------------------IHRKDAD 197
+ + + +
Sbjct: 179 TDGMIDDIVLGAGDAEFDALIRQMFRLKADRILALSREERAKEIRKELKGRKVDFFANRV 238
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM- 256
Y R K + D S F + E +
Sbjct: 239 SYDAGKKAWTFSDGNFTSYDRNDETKFEASRGTSTMHDPQPYKSIVFNEKEIPEAPDDIM 298
Query: 257 ------------------SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ T FY+ + P + ++ +
Sbjct: 299 NSIKEKDDLPTLVIWDLVRRNDNMPDRVYSIYMTVFYYRLAFPWACFLAVFLGIPLATKN 358
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + + + + + + GK GIL PV A L P + I +L
Sbjct: 359 ERTGSL-MAIITAVGIIIVYIVVAQVFLVLGKGGILNPVFAGLAPTLAFIGCGAYRILH 416
>gi|83644756|ref|YP_433191.1| permease [Hahella chejuensis KCTC 2396]
gi|83632799|gb|ABC28766.1| predicted Permease [Hahella chejuensis KCTC 2396]
Length = 365
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 117/353 (33%), Gaps = 5/353 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L + L +++ + + S + R+P +
Sbjct: 3 IILRYLSRQLLVSMLAVAGVLLLIFMSGRFIKYLADAAQ-GKLSADVLFAIMGYRLPGFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+ + A G++ +QL+ +V ++L+ + + +
Sbjct: 62 ELILPLGLFIGILLAYGRMYLESEMTVLFACGMNRFQLIKLTMVSALLVMLVVGAMSLYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + ++ + + + S + + + + ++
Sbjct: 122 SPWGLRQVDEIFSDQSKITEFELLAPGRF--QSLRSGERVTYTEGLSSDKREMQNVFIAE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D ++ I A D + V G + I+ D + +
Sbjct: 180 RDSESGSISVLAAKRGTQLVDPSTGSRFVVLHEGARYQGRPGEMDYRVIEYDAYGIKIAE 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + +++ N + + I IPL++ + L+A +S R +
Sbjct: 240 PDA-EAEKTRDEAKPTSELWRSDNPKDRALLQWRISIPLLVPIVALLAIPLSRVNPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + ++ + + + ++++++++
Sbjct: 299 -FFHLLPAMLIYITYLGLLIASRKSLEKERISEWIGMWWVHGTFLAIALVLMF 350
>gi|297565136|ref|YP_003684108.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296849585|gb|ADH62600.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 346
Score = 97.1 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/352 (16%), Positives = 118/352 (33%), Gaps = 15/352 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++ L L ++ L E+ + + A A RVP +
Sbjct: 4 LDRYLWREVGAAVLGGLAVIVLAFIGGYLYEVLAPLLQR-GADPWVVAQYLAFRVPDALV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P L ++V + SEL A GIS ++L P ++ + +L I VL+ IA
Sbjct: 63 RGLPIAMLFALLLVLSRMGEESELKAFLAGGISPLRVLFPLLLLAAVLFISGVLIGESIA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ G L++Q + + + A + I +
Sbjct: 123 PKATQSGQSLLRQAVFQKPRALLAPGSTFTDAYGRILYVGQADEGGIGGVRVITAEEILL 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQ 243
++ ++ L+ Y ++ Q
Sbjct: 183 SERAHF-----------EGGQLVLEGGSRVTYAGSRPRTVARFERGTVPLVELAQDAPGG 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + E+ ++ +S + ++ T +Y P A T+ A +S F
Sbjct: 232 LSALTLAELHSRIRQYRQSGLPYHAE-LTAYYRKWAEPAAAFAFTVFAVGLSF-FLLGGS 289
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + F Y ++ + G++G L P+ AA P L ++L
Sbjct: 290 RNLGMVGVVVLTFFYYATWSVGRIMGEAGALPPLLAAWGPGTLYAVAGAVLL 341
>gi|119503287|ref|ZP_01625371.1| predicted Permease [marine gamma proteobacterium HTCC2080]
gi|119460933|gb|EAW42024.1| predicted Permease [marine gamma proteobacterium HTCC2080]
Length = 363
Score = 96.7 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 112/353 (31%), Gaps = 7/353 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++ Y + + TL ++VF + + + + S + ++P +
Sbjct: 3 IFLYLTRDVVTHTLAVAFVLFLVVFSGRFIKYLAEAA-VGSLSADVLLPVMLFKLPSFFE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P + ++ + SE+V+ +A GIS +L +V + + + +
Sbjct: 62 LILPLALFIAVLLSLGRMYAESEMVVLKACGISPSRLAVFLLVPGLFIMCLVAGLTMYLG 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G L+ ++ Q + + + H +
Sbjct: 122 PEGSARAQRLLDNPRNAEGLQLMAAGRFKSQRGGELVTYTERIDKAGVMHNVFVVEEQSG 181
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ ++A++ + ++ +++ ++
Sbjct: 182 TDATQVTLAQEAEIITDSATNRRYLELRGGTRYSGVPGESAYEAVAFKRLGELIPEERDS 241
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S + S N R ++ I +P ++ +IA ++S +R +
Sbjct: 242 LRASTRIDATPTADLLSS---DNPRKRATLWWRISLPFLVPVSVVIALALSKTDARRGRY 298
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + +T +S +SG A L ++ +++ +L
Sbjct: 299 A-RLGPALALFLTYFLALTQARSLMESGSGPG--AMLATHLMFSLVALFLLYW 348
>gi|307543948|ref|YP_003896427.1| permease [Halomonas elongata DSM 2581]
gi|307215972|emb|CBV41242.1| K07091 [Halomonas elongata DSM 2581]
Length = 361
Score = 96.7 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 104/354 (29%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L+T ++++ + E + L +P +
Sbjct: 2 IIFRYLTREILQTMAAVAGVLLLVIMGSRFIRYFSNAAE-GEIPVDILGTLMLFHLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ L SE+ + A G S +LL ++ + ++ I L +
Sbjct: 61 ELILPLAFFLGILLALGQLYLNSEITVLVACGTSPNRLLWVSLLPATVVAILVGLCSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+G ++ + D + + +
Sbjct: 121 TPAGALQNEIILDEQSSQLDFGVLAPGRFQNFGGGRVAYTEALSEQERRLEGVFISERQR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D A D+ + + G + + + + +
Sbjct: 181 RDDGTPQTVVTRAAEGYQTIDEETGSRFLVLSDGERYSVEPGRAVAEHLSFGTYAVRLSR 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A+ + + + + A Q + + +P M+ +TL+A +S R +
Sbjct: 241 AAAERDDLDDPEYATTPALFADGSAPAMAQLQWRLGLPPMVFILTLLAMPLSRVNPRQGR 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ IF +++ G + + +L+ L+
Sbjct: 301 FAK-LLPAIFLYVAYLSLLLAALDAIARGAWPTTLGMWPIHAAFLVIGLLMTLR 353
>gi|237740743|ref|ZP_04571224.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422760|gb|EEO37807.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 359
Score = 96.7 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/350 (13%), Positives = 109/350 (31%), Gaps = 3/350 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFIVFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + Q I++ + + F
Sbjct: 120 SIIPRSFIKLKYVGTKIAYENPVFQLKEKTFI-DNLDQYSIYVDKVESDGKAKNIIAFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + + +K + + + + + F+ +
Sbjct: 179 PQDKTKFPMVLTGEEAFWKDNSIVLKQSQFISFDENGKKNLTGTFDEKRVVLTPYFENLN 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + K + + + + + + + V + +I +SL R
Sbjct: 239 LKIKDVEALSITDLIKNIRKVDAEEVLKYKIEIFRKLALIFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ + F + I +G L P A P +L L
Sbjct: 299 SKK-YSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYILG 347
>gi|94495766|ref|ZP_01302346.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
gi|94425154|gb|EAT10175.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
Length = 402
Score = 96.7 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 121/356 (33%), Gaps = 10/356 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L+ A +L+ + + + + + +S + A +P +
Sbjct: 6 DRYLARLIAVPMLGTLVIAAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMLPEYLSL 64
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++ +
Sbjct: 65 GIPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALINFGIVGFVQP 124
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-------ISNPQQDIFIGAKKILPENHIWED 178
L + + + + +D + I +
Sbjct: 125 LSRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSRDQGRNLQGIFVRATSRDG 184
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + D D+ I L + +S L I +
Sbjct: 185 QSVAVTAAQGTFLATDDPDVIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIESF 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ E++ + + + F+F +V + ++ + L A + ++
Sbjct: 245 RGRDNDREKTIPELV-VIGKNQATPPKLRNEVRANFHFRMVEVVFMLLLPLAALAFAIPP 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + V I + + +S G G + P+ A P +L L + +
Sbjct: 304 KRSTS-ALGVFLSIVFIVTYHKVNQYGESVGALGKIDPIIALWGPFLLASGLVLWM 358
>gi|254445062|ref|ZP_05058538.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198259370|gb|EDY83678.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 388
Score = 96.7 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/383 (10%), Positives = 118/383 (30%), Gaps = 27/383 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY K + + + L+ + L + + ++ L P +
Sbjct: 3 LIHRYILKNVFVSCMASVAMFAFLILTMSLVKDMLNLLAEGQLTVGAFFRLTKLLFPFVF 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + ++ L+ +E+ RA G+S+ +L + + +IL +++V
Sbjct: 63 VYALPMGFITGALLTMGRLSAENEITSLRAAGVSVIRLSSSVFLLAILGTTASLVVNFYY 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI--------------SNPQQDIFIGAKKI 169
+ ++ +++ I+ +
Sbjct: 123 GPLAKTEYRQELKNTIQTNPLGFIVEKTFVKDFTGSVIYVGKKEAEMLYDVWIWKLNSES 182
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + + + + I Y D + + K + +
Sbjct: 183 QVTTFARAEKGRFAFLENSAELQLDAEGVTIEYRDAEDPENFRTRNFYPASAAKFPFSFS 242
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN-----------KSNIFHNYRAETQFYFLI 278
+ + + + + +F E+ ++ + + + +A+ F+
Sbjct: 243 LEKILGK-ETLARKLTWMTFDELQGEIRKYEGIAATATGAVREEALDNLLKAKMVFHKNF 301
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ +++ IA + L+ SR + G+ G + Y + ++ L P
Sbjct: 302 AMGFAVLSFACIAIPLGLKTSRKETSA-NLGIGVGMGLLYYLAMISIEWLEGRPDLRPEL 360
Query: 339 AALIPVILTISLSILILLQKEDG 361
IP + S + ++ + G
Sbjct: 361 LFWIPNLAYQSFGAWLFIRADHG 383
>gi|330448737|ref|ZP_08312384.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492928|dbj|GAA06881.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 366
Score = 96.7 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 116/355 (32%), Gaps = 13/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQIAVLFVLFLVFISQKFIRILADASD-GSIPSDLIMTLMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +I+ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN----HIWEDF 179
A + ++++ K + Q + + +F+ I +
Sbjct: 121 APWSQDHVEQVMEKAKAGPGLNMLVKGTFQQTPDGKGVVFVDDITEKGSKLSKVFIAQLK 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ T+ + R ++L Y+ ++ + T N + G ++
Sbjct: 181 ATETLQPSVMVADRGLITEQPDGRQMLELNDGTRYEGIPTQLNYSITHFNNYQALIGQRE 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + M SN + + + + + L + + +I +S
Sbjct: 241 VKQGNRDWEALPTLDLMKESNLAA-------KAELQWRFSLILCIPLLVMIVVPLSAVNP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ I T+ +++ +
Sbjct: 294 RQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSGIGMWPINIATLLVALGL 347
>gi|188532528|ref|YP_001906325.1| Putative permease [Erwinia tasmaniensis Et1/99]
gi|188027570|emb|CAO95417.1| Putative permease [Erwinia tasmaniensis Et1/99]
Length = 366
Score = 96.3 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYAESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + Q + Q +FI K ++++
Sbjct: 121 GPWSSRYQNEVLQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGDTFSNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + + ++ + ++ +
Sbjct: 181 GNARPSVVVSEHGHMEQRRDGSQVVTLDQGTRFEGTALLRDFRITDFKNYQAIVG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + ++ ++ + + ++ M L+ +S+ R +
Sbjct: 236 HQVVTLDPNDSEQMSLDTLWHSDKPDFRSELHWRLTLVFSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G G + P A ++ ++L++L+
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSSGDKGRVDPAIAMWTVNVVYLALAVLL 345
>gi|147673657|ref|YP_001217998.1| hypothetical protein VC0395_A2082 [Vibrio cholerae O395]
gi|262167531|ref|ZP_06035236.1| predicted permease [Vibrio cholerae RC27]
gi|146315540|gb|ABQ20079.1| putative membrane protein [Vibrio cholerae O395]
gi|227014390|gb|ACP10600.1| putative membrane protein [Vibrio cholerae O395]
gi|262023984|gb|EEY42680.1| predicted permease [Vibrio cholerae RC27]
Length = 366
Score = 96.3 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 109/338 (32%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|70728449|ref|YP_258198.1| YjgP/YjgQ family permease [Pseudomonas fluorescens Pf-5]
gi|68342748|gb|AAY90354.1| permease, YjgP/YjgQ family [Pseudomonas fluorescens Pf-5]
Length = 372
Score = 96.3 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 110/348 (31%), Gaps = 16/348 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREILLTLSAVSAVLLVIIMSGRFVKFLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-------HIW 176
A G L+ + + + +++ + + N
Sbjct: 121 APQGANQFQLLLNKQDALTEFDTLVAGRFQALNDGTRVTYTEQLSEDRTNLGGVFISEKR 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + D+ N + L+ Y + + +
Sbjct: 181 LGQQKKDEGISVLVAEKGHQDIRPDGNRYLILENGYRYDGNPGEANYRVIKYDTYGVLLE 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S++ R + + RA + + + +PL++ +TL+A +S
Sbjct: 241 RPDVSDEVTDRDAMPTADLI-------GKDDLRARAELQWRLSLPLLVFIVTLMAVPLSR 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I TI+ ++ + G + P
Sbjct: 294 VNPRQGR-FLKLIPAILLYMAYLTILIAVRGALEKGKISPALGLWWVH 340
>gi|253686792|ref|YP_003015982.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753370|gb|ACT11446.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 371
Score = 96.3 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/353 (12%), Positives = 123/353 (34%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL + ++ + + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALALAVFTAVIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + +F+G K H++ +
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + L Y+ + D T + G Q +
Sbjct: 181 GNARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVT 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + A +F++ + + L ++ M L+ +S+ R
Sbjct: 241 LNNSDVQQM-------DMQTLWHSDAHDARAEFHWRLTLILSVLIMALMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G + P+ + ++ +++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVML 345
>gi|189485654|ref|YP_001956595.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287613|dbj|BAG14134.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 384
Score = 96.3 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/384 (10%), Positives = 119/384 (30%), Gaps = 29/384 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K + L + ++F++D + S L A +P
Sbjct: 1 MIKKLHLYTIKESFGSFLLGVAVF-SILFILDYVFELVDLFLSKGVSFFLVLKLFAFALP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I++ IP L ++ + L+ +E+ ++ G++ L P ++ ++ F +
Sbjct: 60 NILRLAIPMSVLFGILIAYGKLSEDNEITAMKSSGVNYRTLSLPIIILVCIISSFLLFFN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDII--------------------------PWMQ 154
+ ++ + ++L ++ K +
Sbjct: 120 HFLSPAMNSNFVNLYREILTKKPLIKFTEKTTIELGEYRLYANKVNRKNNTLYEVSIYKF 179
Query: 155 ISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY 214
+ +K ++ ++ + + + + + +K
Sbjct: 180 ENKDDYCYGYNDEKSDKKSLFLQNNSKAWRIAASSAKVKSYQNGTQFFIYDGYWQKANFS 239
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ + + ++ + + +S EI+K + + +I E +F
Sbjct: 240 DINNMTHMTFKSYCFFIPSSEVMKEQTLSMSEKSSPEILKTIKTCKEQDIPFTA-NEIEF 298
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + L ++ LIA + + + + I + + Y ++ + + +
Sbjct: 299 WIRWIYALAPISFVLIALPIGIMAGKDGKT-IGFGMSLSIILVYYMLLILALILSEKEYV 357
Query: 335 LPVAAALIPVILTISLSILILLQK 358
+P I + I + +
Sbjct: 358 PANLIMWLPNITVTAAGICLFTKM 381
>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
Length = 361
Score = 95.9 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 122/356 (34%), Gaps = 2/356 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+Y K +++ T+ + I+ + + + + E N S V + P ++
Sbjct: 4 FNKYIIKLFVQYTVIVQVFVAIITLIANTFQHTKMLSEY-NISFMTLIVYDLMKTPYLLY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P ++ ++V L + +EL+ ++G I L PF+V I L + + I
Sbjct: 63 TTMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADVIN 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ N S + M + E I
Sbjct: 123 PKIMLERERFAYENIKNRTFNVSGKLTDMWLKESDSSFININLMDPTEKKIIGITEYHLN 182
Query: 185 DKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K KKV + D + D
Sbjct: 183 NNFQVDYIVTYDSAEYYEGKWIEKNKKVFAMDPVPVMTDSAEEVIQERELFDELTSLPVL 242
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +++ + K + + Q Y L ++ + L+ + + F+R++
Sbjct: 243 SPKFLSLKEVRRTAEIMKKQDINTAKYYLQLYKSYAHALSVIVIILVIFPLCIGFNRNHS 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + +F+GF + ++ +S GK+G+ P+AA IP+ L++ ++ ++E
Sbjct: 303 YIAVASKSLFTGFAYWMLMASFQSLGKTGLFSPLAANFIPIGAFFILALALIYRRE 358
>gi|33151747|ref|NP_873100.1| hypothetical protein HD0553 [Haemophilus ducreyi 35000HP]
gi|33147968|gb|AAP95489.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 367
Score = 95.9 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 111/351 (31%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K LK+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEILKSQLAILFILLLMFFSQQLISVLNSAVS-GKIPTDLVLSLLGLGMPALS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA GI L + S+ V + +
Sbjct: 61 QFMLPLSLFIALLLTLGRFYADSEITVMRACGIGQGLLTKVALFLSLFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + K N + +M++ I K+ N ++
Sbjct: 121 TPWSINKQSQILAEAKSNPRFSALSVGQFMEVGGYVLFIENINKQENKLNDVYVFQPDQQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ + L + N L +Y + +
Sbjct: 181 KKNRPSVVTAELGGLQALPNGDQILTLANSTRYEGSANVADFRISHFDRYQAYLG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + + A+ + + V+ + M L+A +S R +
Sbjct: 236 YQDIQTNDKRVQRANFTSLINDTSNEAKAELQWRFVLIFAVPLMALLAVPMSQVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + + + + ++S G++ L I + L+I++
Sbjct: 296 FAK-VIPAVLLYLIYFLLQSSLRSSGENDKLNATLFMPAVSIGFLMLAIIM 345
>gi|88802489|ref|ZP_01118016.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
gi|88781347|gb|EAR12525.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
Length = 351
Score = 95.9 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/348 (16%), Positives = 124/348 (35%), Gaps = 6/348 (1%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV-LAATRVPLIIQQIIPFITL 72
+ T L+ LL + + ID++E + E PN IS + +P
Sbjct: 1 MVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGISEVLNDYYINFIIYYSNTFMPLALF 60
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ I+ L+ +E++ +S + L P+ +G+ L+ + ++ + + + KI
Sbjct: 61 IAVILFTSKLSSNTEIIAITNAKVSFTRFLYPYFIGASLVTLLSLAMNHYVVPKSSKIRK 120
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
+++ ++ + + +I + N++ DF S T D I
Sbjct: 121 GFEKKYINSSKQSNALKYVSNFSLQLTDSTYIFIRSFNTANNMGYDFNSETYDGIKLISK 180
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQKFSEQFASRS 248
++ D + D+ N S
Sbjct: 181 LSSDNIMYNPKDSTFTLTGWRKRLIYEKRDRIFSGNKLDTVFNFSTKDLVYKSAFAQEMP 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
E++K ++ S K + + +FY +P+ +T+IA +S R + +
Sbjct: 241 SGELLKYINISKKRGVKNLNAYLVEFYKRTSLPIASYILTIIAVGLSFRKKR-GGTGVNL 299
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
A G+ F+ + + + G + +A IP I+ ++I + L
Sbjct: 300 AIGVGIMFLYVFFMKVGEVLGSVAGVDSLAYVWIPNIIFGVVAIYLYL 347
>gi|332521048|ref|ZP_08397506.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
gi|332043141|gb|EGI79338.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
Length = 340
Score = 95.9 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/338 (11%), Positives = 103/338 (30%), Gaps = 2/338 (0%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
+L + + + L E ++ + + + + P + I
Sbjct: 1 MMILLFIPIGITVHLAEKIGKILDR-EAPLGETLIYFLDFTIYFAHLLFPLFLFLSVIWF 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +E++ + G+S + L P+++G+ ++ +F++L+ +A K D ++
Sbjct: 60 TSKLANNTEVIAFLSSGVSFTRFLRPYLIGATIVAMFSILLGLYLAPVASKGFNDFQYKY 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ Q + + + +
Sbjct: 120 LKRKNNQAQSNVLKQINDKEIIYVSSFDPIKKTGLNFSLEHFENNKMTYKISAANIRYIE 179
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
K + + +++ + + E+ + +
Sbjct: 180 EDSIYRLRSYLKRNVGENEDELAIERKKDTIFSFELEDLVPEEYIAETLRYSELTRFIER 239
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
K + R + + Y +P+ + +T+IA +VS R + +A+GI +
Sbjct: 240 EEKRGSSNIGRYKLELYRKWSLPVSVFILTIIAVAVS-SKKRRGGMGVNLAFGICIAMVF 298
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
I + P+ A P + L+ ++L
Sbjct: 299 VFFDKIFGTMAAQSDFSPLIAVWFPNFIFGILAAILLY 336
>gi|327484988|gb|AEA79395.1| Predicted permease [Vibrio cholerae LMA3894-4]
Length = 366
Score = 95.9 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|88859092|ref|ZP_01133733.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
gi|88819318|gb|EAR29132.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
Length = 348
Score = 95.9 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/333 (15%), Positives = 115/333 (34%), Gaps = 4/333 (1%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + I + + + + A ++P + I+P + I+ + +
Sbjct: 1 MTIFVSEKFVRILTEATD-GSLPAKLIISMLALKLPQLASFILPLSIFLGIILAYSRIYA 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + +A G+S W ++ +V S +L +F + +A + L ++ K
Sbjct: 60 DSEMTVFKACGVSEWYVVRVTLVSSFVLALFAGALTLVVAPWASEQEYRLEEKAKAESGL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ Q N + +FI + ++K A I+
Sbjct: 120 FSLRAGRFQQTGNEKAVVFIHDINQGGTELNKVFVAQFSENEKRPQARIVYAQHGIVEEG 179
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+++ D S L + + EQ ++ + S+
Sbjct: 180 ASGEQQLKLAAGKHYETDGISKELKVTEFSGYQVQIQEQAIEHQRRKL--EAISSSALLQ 237
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ A QF + + IPL ++ +T IA +S R + +V I + + ++
Sbjct: 238 MNTADAAAQFQWRLAIPLSILILTFIAVPLSEVNPRQGKFAKLVP-AIVFYLIYFILLNG 296
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
K + G + + + + +L++L+
Sbjct: 297 AKFAIEDGQIPVGLGLWWIHLTALFIGMLLILR 329
>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 361
Score = 95.9 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/340 (15%), Positives = 115/340 (33%), Gaps = 3/340 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYFF+ +K F+ L +ID + Q ++ S + +
Sbjct: 10 IWERYFFREVVKLFCVFIGSFYGLYVLIDFSSHTTQFST--HFQWSEIFSYYFYELIRRL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF ++ I +L+ +ELV A G+S+ LL PF++ + + +
Sbjct: 68 DVILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLFFTVLMYGNAEFL 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+K + + + + I Q + ++ + +
Sbjct: 128 LPKAQKGLKQIHDRHTS-LKNKLENRGFVQHIILDDQTQILFQYYDEERQFFFDSYWIKS 186
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D +I + + L + + I Q+
Sbjct: 187 ADDIFRIKYLFPHLEVPLGRYVHHLTRNQNDELVESASFVEKEFPQIYFNQKKLQETLSL 246
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+S ++++++ +N+ + + + FY + +P + + + A + FSR
Sbjct: 247 PEEQSLTDLVQQLPHNNRISHEKEAQVVSHFYHKMALPWLCLFAVIAPAPFCVRFSRGLP 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+I A IF Y + K +L P+ A +P
Sbjct: 307 VFMIYACSIFGLITFYLTMDAALILAKRQVLDPIWAIWMP 346
>gi|262068070|ref|ZP_06027682.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
gi|291378156|gb|EFE85674.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
Length = 359
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 113/363 (31%), Gaps = 13/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFILFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + I K+ +
Sbjct: 120 SIIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLD---QYSIYVDKVESDGKAKNIIAF 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+ K K + A ++ + LK+ + + + + +
Sbjct: 177 EKPEDKTKFPMVLTGEEAFWKDNAIILKQSQFISFDETGKKNLTGTFDEKRVVLTPYFEN 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S +++K + + + + + + + V + +I +SL
Sbjct: 237 LNLKIKDVEALSITDLVKNIRKVE---TEEVLKYKIEIFRKLALIFSTVPLAVIGFCLSL 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R ++ + F + I +G + P A P +L L +
Sbjct: 294 GHHRISKK-YSFVLAMIIIFAYIIFLNIGIVMASAGKIHPFIATWTPNVLLYFLGYKLYR 352
Query: 357 QKE 359
KE
Sbjct: 353 AKE 355
>gi|167585748|ref|ZP_02378136.1| permease YjgP/YjgQ family protein [Burkholderia ubonensis Bu]
Length = 382
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 107/363 (29%), Gaps = 26/363 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLFEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHI 175
+ +++ + Q W+ + + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARDNGEQVTRFVNVGSLSPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R L V E + Y
Sbjct: 180 SNVRIYEFDSKFQLQNVRIAQTGRYEAPGHWLLTGVTETELTPIKPIGGQPADALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + + N R + +
Sbjct: 240 SQQVTLPEFRLRSDLTPQILSVLLVSPERMSLINLFRYIQHLKE-NQQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
++ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAP 358
Query: 338 AAA 340
A
Sbjct: 359 LTA 361
>gi|260772182|ref|ZP_05881099.1| predicted permease [Vibrio metschnikovii CIP 69.14]
gi|260613049|gb|EEX38251.1| predicted permease [Vibrio metschnikovii CIP 69.14]
Length = 367
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/338 (12%), Positives = 105/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPARMILSIVALNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAIITSSAAAFNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + LI+Q + + + +FI + +++ +
Sbjct: 121 SPWSQDKEAQLIEQLAAESSVDLLQKGQFQRSPDGSSVVFIDNIENRKLQNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + + + +Y +P + + S +
Sbjct: 181 QSILPSVMFSDSGEVKELSDGRQMITMHNGVRYEGVPTRLDYMITRFDQYEGLIGQRSVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + E N + RA+ + + I + L + +T++ +S R +
Sbjct: 241 AKGRDWQETPTLALIRN-----PDSRAQAELQWRISLVLCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + I+ MKS + G +
Sbjct: 296 FAK-MGPAILIYLTYFLTISAMKSALEDGTIPIEIGMW 332
>gi|254498611|ref|ZP_05111330.1| permease [Legionella drancourtii LLAP12]
gi|254352151|gb|EET10967.1| permease [Legionella drancourtii LLAP12]
Length = 359
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 116/354 (32%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + T + +++ L + N+ L +P ++
Sbjct: 2 IIFRYLAREVFVTLIALTSILVLIFLSNQLIQYLNRAAS-GTIPGVIIMKLMMLELPTLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + L SE+ + RA G QLL + +I + + V+
Sbjct: 61 SLLVPLGFYIAMLVAYGRLYAESEMTVLRACGYGPNQLLQHSFIMAIGVALIVAAVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L++ Q + N Q+ ++ + +
Sbjct: 121 SPYIYIERAKLLRTTGIQTLVQTIMPGRFHAAHNGQEVFYVQSMSRDHSKAEHVFLAKRS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+K AD A D + + Q G+ + ++
Sbjct: 181 KEKNKMRWDVLWADKAFAETDAKTGEDYIILQDGKEYQGTPGHADYQISEFGEYKARLPH 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + S + + + + +P+M++ +TL+A +S SRS +
Sbjct: 241 PIVKINDDLRTFSTASLWPLNNADPGKAAELQWRLSVPIMVLTLTLVAVPLSRINSRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + ++ I + SG + L ++L + ++ +
Sbjct: 301 YAK-LFPAIIIYILYANLMFIGRDAIVSGKIPQWLGLWWIHFLVVALGLFLIWR 353
>gi|15642496|ref|NP_232129.1| hypothetical protein VC2500 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153215710|ref|ZP_01950091.1| membrane protein, putative [Vibrio cholerae 1587]
gi|153822404|ref|ZP_01975071.1| membrane protein, putative [Vibrio cholerae B33]
gi|153831206|ref|ZP_01983873.1| putative membrane protein [Vibrio cholerae 623-39]
gi|227082619|ref|YP_002811170.1| hypothetical protein VCM66_2422 [Vibrio cholerae M66-2]
gi|229507442|ref|ZP_04396947.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
gi|229509633|ref|ZP_04399114.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
gi|229516758|ref|ZP_04406204.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
gi|229521565|ref|ZP_04410983.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
gi|229606948|ref|YP_002877596.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
gi|254291418|ref|ZP_04962210.1| membrane protein, putative [Vibrio cholerae AM-19226]
gi|254851045|ref|ZP_05240395.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744521|ref|ZP_05418473.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297581347|ref|ZP_06943270.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298500669|ref|ZP_07010473.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9657081|gb|AAF95642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124114628|gb|EAY33448.1| membrane protein, putative [Vibrio cholerae 1587]
gi|126520047|gb|EAZ77270.1| membrane protein, putative [Vibrio cholerae B33]
gi|148873313|gb|EDL71448.1| putative membrane protein [Vibrio cholerae 623-39]
gi|150422608|gb|EDN14563.1| membrane protein, putative [Vibrio cholerae AM-19226]
gi|227010507|gb|ACP06719.1| putative membrane protein [Vibrio cholerae M66-2]
gi|229341159|gb|EEO06163.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
gi|229345821|gb|EEO10793.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
gi|229353107|gb|EEO18046.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
gi|229354947|gb|EEO19868.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
gi|229369603|gb|ACQ60026.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
gi|254846750|gb|EET25164.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738046|gb|EET93439.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297534185|gb|EFH73023.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297540838|gb|EFH76895.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 366
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|171913020|ref|ZP_02928490.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
4136]
Length = 385
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/383 (10%), Positives = 114/383 (29%), Gaps = 26/383 (6%)
Query: 1 MP-GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM-GELPNYSISRGAVLAATR 58
MP I RY ++ +TL +L ++ + ++ + ++ G+ + + A
Sbjct: 1 MPLRIFDRYIWRQVSSSTLTGVLVLTGVMVLGNVFKEMERLLGDTASLPLMAVAQFITYV 60
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + IP+ L ++VF ++ +E+ R G+S+ ++ SI + L
Sbjct: 61 IPYSLIFTIPWALLTAILLVFGRMSADNEMTALRMTGMSMPRICAAVFALSIFMSGVCYL 120
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V +A + L + + + + +N
Sbjct: 121 VNVELAPLAKTKIKRLFYDLALDDPAVLFQPGKVLDRFPGYRIFTQEREGNKLKNVEIIQ 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-------------------EYQYGRI 219
++ + + + + ++ L+ +
Sbjct: 181 TNLGRAERYIRAKRAEVVVTPGVTDFQLHLRNATVETGGGEADAASAGGEVNIMNDLQFL 240
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR----AETQFY 275
+ + T + + ++ + S S+ + + + T+
Sbjct: 241 YMGDTAITFPLSKLKEKTERVTSSMKDTSALWSEVNTGISSVDGQPLSEKLISVSRTELS 300
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
L + TL+ + + R I A + + + + +
Sbjct: 301 MRYSFSLAAIVFTLVGIPLGITAQRRE-TSIGFALSLIVAVSYMVFVIFVNGLNERPSVY 359
Query: 336 PVAAALIPVILTISLSILILLQK 358
P IP ++ I + + +
Sbjct: 360 PHLLMWIPNLIFIGVGSRMFYKL 382
>gi|227114629|ref|ZP_03828285.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 371
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/353 (13%), Positives = 125/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ I + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + +F+G K H++ +
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + L Y+ + D T + G Q +
Sbjct: 181 GNARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVT 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ N + A +F++ + + + ++ M L+ +S+ R
Sbjct: 241 LNNSDVQQM-------DMNTLWHSDAHDARAEFHWRLTLIISVLIMALMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G + P+ + ++ +++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVML 345
>gi|196228894|ref|ZP_03127760.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
gi|196227175|gb|EDY21679.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
Length = 376
Score = 95.5 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/374 (12%), Positives = 106/374 (28%), Gaps = 18/374 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY L T + +++ + ++ + + + + + +P
Sbjct: 1 MKLIDRYVGGQLLVTFSLAVSVLSVVLVLGNIFKQLLDLLVKNDTPLEVVVSFLSYILPF 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP+ L ++VF L+ ELV RA G+SI +L + + +
Sbjct: 61 SLSFTIPWAFLTAVLLVFGRLSAEHELVAFRASGVSIPRLCYTVFLLAAACVATCFWINI 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + + + ++ + N + +
Sbjct: 121 DVAPRAQGKMKEALYNVAVTNPLAMFGADLVIDSFPNKKIYLESSNGPELHNLLVYESND 180
Query: 182 ITIDKKNKIIHRKDA-----------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
+ K R + + V + I TL I
Sbjct: 181 DNLLLKVIFARRGLIETDGEKKQLLLHIYDATYEARDDDDVENLLKIKQGITMREATLPI 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLML 284
++ + S + ++ +S +S + R E L
Sbjct: 241 SLEELHKKYHKGGLPSMTTGALLDHLSEKTESTMTEKERIEQHSATITEINKRYSFSLAA 300
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ L+ +++ R I + + Y I I + + P +P
Sbjct: 301 ICFALVGVPLAITAHRKE-TSIGFLISLCVALVYYFFIIIANTVREKPQWHPAELVWVPN 359
Query: 345 ILTISLSILILLQK 358
IL + + +
Sbjct: 360 ILCVVFGGWLFYRM 373
>gi|229513427|ref|ZP_04402891.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
gi|229349304|gb|EEO14260.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
Length = 366
Score = 95.2 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 107/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L+ Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMDQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|294782104|ref|ZP_06747430.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
gi|294480745|gb|EFG28520.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
Length = 359
Score = 95.2 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 113/363 (31%), Gaps = 13/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGSAIFILFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + I K+ +
Sbjct: 120 SIIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLD---QYSIYVDKVESDGKAKNIIAF 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+ K K + A ++ + LK+ + + + + +
Sbjct: 177 EKPEDKTKFPMVLTGEEAFWKDNSIILKQSQFISFDETGKKNLTGTFDEKRVVLTPYFEN 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S +++K + + + + + + + + + +I +SL
Sbjct: 237 LNLKIKDVEALSITDLVKNIRKVE---AEEVLKYKIEIFRKLALIFSTIPLAVIGFCLSL 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R ++ + F + I +G L P A P +L L +
Sbjct: 294 GHHRISKK-YSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYFLGYKLYR 352
Query: 357 QKE 359
KE
Sbjct: 353 AKE 355
>gi|78486088|ref|YP_392013.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
gi|78364374|gb|ABB42339.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
Length = 369
Score = 95.2 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/352 (12%), Positives = 115/352 (32%), Gaps = 10/352 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y +K T L +++ F + ++ + + + ++P
Sbjct: 1 MRILDKYLYKELFATFFAVLSVLLLITFGTEATKLLA-VAVEGAIPSTVIMQVLLYKIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P + L+ ++ L + E+V+ ++ GI+ + L T V
Sbjct: 60 ALEVILPLVALLSVMLAVGRLYQDQEMVVLQSCGIATSFFQKRVFWFLVPLAFLTAWVSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + LI + + + + N + + + K +
Sbjct: 120 VVTPWSYEQERKLIMEAQTTSPLAALVPGKFNPLPNGEGIFYTRSIKSNGDLESVW-VRL 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T ++ ++ K I + L Y+ + D + D F+ F
Sbjct: 179 NTDERDILLMAPKGKFEWINGKLVLVLLNGRSYEGLKKGDDF------TVREFDRFEGFL 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + + ++ S E + IV P ++ + L+ +S R
Sbjct: 233 PEIQSTSTAQQVFEIPTSTLWQS-DKPEHEALLQWRIVTPFSILVLGLLGLKMSKSGPRE 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ V + + + ++ + + L P ++ + ++
Sbjct: 292 GRFAK-VFFALVLYVIYNQLLVTFRESISNEALSPWVGLWPIPVVFLMYALY 342
>gi|300725026|ref|YP_003714352.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
gi|297631569|emb|CBJ92278.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
Length = 366
Score = 95.2 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L E+ N + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLG-AAVEGNIPANLVISLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L I +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKSVLVKSALILALLTSILAAANVIWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + + ++IG K +++ T
Sbjct: 121 IPESSKYQAQVLADAKTNPSLAAIMEGQFKPSRDGNMVLYIGNVKGNTFENVFLAQLRST 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ +I + N +Y + ++
Sbjct: 181 NDQRPSVIFADGGHMEERPNGNQVAVLHQGTRYEGTALLRDFRITEFTNYQAVIGHQRAD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + + +F++ + + L ++ M L+ +S R +
Sbjct: 241 IDNNKVEQ-----KSLEQLWHATDDDSRAEFHWRLTLILSVLIMALMVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G G L P+ + ++L++ +
Sbjct: 296 I-LSMLPAMLLYLIFFMLQSSLRSNGSKGKLDPMFWMWLVNGSYLALAVAL 345
>gi|317051997|ref|YP_004113113.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
gi|316947081|gb|ADU66557.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
Length = 356
Score = 95.2 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/352 (13%), Positives = 125/352 (35%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y F+ YL + + L V+D+ + + S + A + + +
Sbjct: 2 TLLLYTFRQYLHIIFLAMAVLVALYGVVDIIGNLDDFA---HLSSLQIAYYVGATLLIGL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P I L+ ++ + +E+ I + GIS+ ++ P +V L+ +
Sbjct: 59 YHLTPAIMLIATVMYITTIGVNNEMKIMLSAGISLKKISLPVLVFVSCAAGAHFLLGEQV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L + + I + + N F ++ EN++ T
Sbjct: 119 FQHIKPEVDALQKYEARQQRPPSAIIAGNLWVRNYDGTSFARIRRFNMENNLLLGVEIYT 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSE 242
++ I AD + ++ L+ VV + + + + M+ + +
Sbjct: 179 -VREGMIQEYVSADHGSLQEGRIHLEGVVIRNFMTQQVSRLPEHQVEFTGIMESTKASIK 237
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S E+ ++ ++ + ++ + L ++ ++L+A + + R +
Sbjct: 238 PLEEYSSRELASDIAILREAGHPSHL-YVSELLRRVSYSLAIIVLSLVAIPLGVTGERKS 296
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V G+ + + + ++ + GK + P A I + + L + +
Sbjct: 297 GKIFSVTVGLLVAMVYFIVDSLAMTLGKGDAISPYIAPFIANGVFLGLFVFL 348
>gi|114331100|ref|YP_747322.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
gi|114308114|gb|ABI59357.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
Length = 357
Score = 95.2 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 12/343 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GI+ RY + L + + L + L + +
Sbjct: 1 MGIIERYISRELLLPFFVVTIILIGLFVSFSVARFLTGAVAET-LGAIAMFKLVGLKTII 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V I +NR E+ + R++G Q++ + ++ + + + ++
Sbjct: 60 ALEVLVPIAFYVAVIHGLSRMNRDQEINVLRSVGYGDNQIIRTVFIIALPIAVLSGVLSI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ Q + + + + + IFI K L +
Sbjct: 120 YARPWAYAESYVMNAQAEAELNTDRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGIFHYI 179
Query: 182 ITIDKKNKIIHR--KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + + I+ R + ++L Y+ G ++ I + +
Sbjct: 180 RTAENREIIVSREGYQQPMTQEQWPYIELLDGKIYRLGYDAARDSTVQFEKMIYFNENDQ 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+K + + + + + + P + + LIA S +
Sbjct: 240 AQN---------YRRKAASTQSLWNSEQPQEIAELQWRLSRPAATILLALIAVSFTRTAP 290
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
R ++ + Y + + K++ + G++ V
Sbjct: 291 RKDKADRTFIVAALVFAVYYNLSGLAKTWVEQGVVAAVPGIWW 333
>gi|315185938|gb|EFU19702.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6578]
Length = 361
Score = 95.2 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 117/361 (32%), Gaps = 7/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ R+ ++L L+ + ++ +IDL + + + + L +P
Sbjct: 1 MRIITRFALSWFLPLFFAALVSFVTILELIDLFTNLVAYID-ADLTTFQILHLQLLYLPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P TL +L+ ++EL+ GIS+++ + PFVV +L +
Sbjct: 60 CVTYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +L+ + + + N +
Sbjct: 120 LLAIPSLTQKQELMAILMGRTSPTQVVNVTLVGEENRLVVHTRRYDDRSRTITRVLVYEK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI----KMDGF 237
I + + V + + + + S + + F
Sbjct: 180 DEEGAFASRIEAERGTWDPEQREWVLQRVRRYIRDEEGNLKEESFEKLRTDLGEIQPEDF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E + + ++ + A T +Y I + L+A+SV+
Sbjct: 240 LQTRHSIDKMTLAEAGRWIQTLKRAGLP-YREALTDYYKRISFAFTSFIVALLASSVAGR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F + ++ + G Y + F K G L PV A +PV++ S SIL
Sbjct: 299 FKANALLLSLLLS-LSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFKY 357
Query: 358 K 358
Sbjct: 358 I 358
>gi|311694207|gb|ADP97080.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
Length = 369
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 118/353 (33%), Gaps = 6/353 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I++RY + + + + +++ + + + + S + A R P
Sbjct: 1 MSIIFRYLIRQIMISMVAVSGILLLVFMSGRFLKYLDSAAQ-GSISAGVLLEIMAFRFPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P + ++ + + SE+ + A G+S LL ++GS+ + I +
Sbjct: 60 FLELILPLGLFIGILLAYGRMYLESEMTVLSACGVSDKALLGKTLLGSLPVMIIVGAMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ G +++ + + + + + S+ + + + + +
Sbjct: 120 YVSPWGMNQVQEILNEQRKATEFEMLAPGRFQDFSSGGRVT--YTEALSEDKRQLQGVFI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + AD D + + + G I + +
Sbjct: 178 AEYAPDGRGLTIITADSGSQLIDPETGSRFLILENGGRFEGAAGQLNYNVIDFEAYGLKI 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + + + ++ + + ++ +PL++ +TL+A +S R
Sbjct: 238 EGGEAGT--KQREEGASTWSLMQSDRLEDRALLHWRFSLPLIVPIVTLLAVRLSRVNPRQ 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + ++ + + + +G + L L + + +
Sbjct: 296 GR-FFHLLPAMLVYITYLGLLIVARDWLAAGKVPEWLGMLWVHALFLGFGLWL 347
>gi|260779401|ref|ZP_05888292.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
gi|260604491|gb|EEX30791.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
Length = 367
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 114/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVSLSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAAANAFVF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ I L ++ + + + +FI + H++
Sbjct: 121 SPMSQEKLIQLQEEVEAENSVDLLQKGQFQGTPDGSSVVFIDDIEGKQLKHVFVAQMRPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ +Y +P + + + +
Sbjct: 181 DSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTDFDQYEGLIGQRDVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + I + + RA+ + + I + + + +T++ +S R +
Sbjct: 241 PKGRDWEAIPT-----MQLVSNPDPRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I + I+ KS + G + + +I I
Sbjct: 296 FAK-MGPAILIYLAYFLSISATKSALEDGSIPSFIGMWPINAALLLTAIGI 345
>gi|148977744|ref|ZP_01814300.1| putative permease [Vibrionales bacterium SWAT-3]
gi|145962958|gb|EDK28228.1| putative permease [Vibrionales bacterium SWAT-3]
Length = 360
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/345 (9%), Positives = 106/345 (30%), Gaps = 7/345 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +K+ ++ + + S + + +P + ++P
Sbjct: 1 MIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GAIPASLILSIVSLNMPAMGLLMLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ F L SE+V+ A GI L+ + +++ ++ +
Sbjct: 60 LSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLSPWSQ 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ ++ + + +FI +++
Sbjct: 120 DKVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDIDGNKLENVFVAQMRPRDSVLP 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+++ K D+ + + + + ++ +P + + + + R
Sbjct: 180 SVMYSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYEGLIGQREVEKKGRD 239
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + +N A+ + + I + L + +T++ +S R + +
Sbjct: 240 ----WEAIPTLDLVGNPNNS-AKAELQWRISLVLCIPLLTMLVVPLSAVNPRQGRFAK-I 293
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
I + I+ KS + G + V L + ++I
Sbjct: 294 GPAILIYLTYFLAISATKSAIEEGSIPAVVGMWPINALLLIVAIG 338
>gi|229524483|ref|ZP_04413888.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
VL426]
gi|229338064|gb|EEO03081.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
VL426]
Length = 366
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 109/338 (32%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLAEASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|254303140|ref|ZP_04970498.1| possible ABC superfamily ATP binding cassette transporter membrane
protein [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148323332|gb|EDK88582.1| possible ABC superfamily ATP binding cassette transporter membrane
protein [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 359
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/344 (13%), Positives = 107/344 (31%), Gaps = 3/344 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGAKIAYENPVFQLKEKTFI-DNLDEYSIYVDEVDSDGKAKNIIAFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + + +K + V + + + FQ +
Sbjct: 179 PEDKSKFPMVLTGEEAFWKDNSIILKESQFVSFDETGKKNLVGTFDEKRVVLTAYFQDLN 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ II + K R + + + + + V + +I +SL R
Sbjct: 239 IKIKDVEALSIIDLIKGLKKVEATEAIRYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + I +G L P A P +
Sbjct: 299 SKKYSFI-LAMIIIFAYIIFLNIGIVMATAGKLNPFIATWTPNV 341
>gi|152987845|ref|YP_001346668.1| hypothetical protein PSPA7_1283 [Pseudomonas aeruginosa PA7]
gi|150963003|gb|ABR85028.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
Length = 372
Score = 94.8 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 113/356 (31%), Gaps = 6/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + + + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDTLVPGRF--QAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + R + L + Y + + + +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIKYDTYGVM 238
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + ++F N R + + + + PL++ +TL+A +S R
Sbjct: 239 LPKPEASSEVSERDAVPTVDLFGSDNPRYQAELQWRLSTPLLVFVVTLLAVPLSRVNPRQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I ++ ++ G + L +++ +++
Sbjct: 299 GR-FLKLLPAILLYMAYLALLIAVRGQLDKGKIPMAVGLWWVHGLFLAIGLILFYW 353
>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
Length = 442
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/410 (11%), Positives = 118/410 (28%), Gaps = 57/410 (13%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K ++ L+ ++ + ++ N + E + +P
Sbjct: 1 MKILKRYLLKEHIAPFFIALMVVTFVLLSDRIIDLMNLIIEKK-LPWQTVFEVFGLSLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP LV I+ F ++ E+ ++ GI+++ L+ P V+ ++LL V +
Sbjct: 60 MLALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLLTGLMVYFNH 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+L+ + + + +L + I++ S
Sbjct: 120 WFLPDTNHKLKNLMLKIAYYKPMTIIKEKEFTNFMDYTIYARETTDSLLTDVLIYDRSQS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP--------IK 233
+ + + + TT +
Sbjct: 180 HFPRTIFAKSGNVIQKDNGNSLQIILNDGEMHERNEKEVGKYQKTTFSRYIINVRNLGSN 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET--------------------- 272
M+ F+ ++ ++I + K E
Sbjct: 240 MEMFETGYRSDREMTYNQLITAIGDHKKELQTKQQEIEELNKRIELLQKSPQNFTRNMEL 299
Query: 273 --------------------------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+++ + ++ LI + L +R++ +
Sbjct: 300 RRLQAMQKMVIDRTQELKELINSLLVEYHKKFSMSFAIIIFVLIGIPLGL-MTRTSGIGM 358
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + Y + + G + P A + I+ + L++L+++
Sbjct: 359 SFSVSSIIFLVYYIALNGGEQLADKGFMPPFLAMWLANIIFLILAVLLII 408
>gi|24213174|ref|NP_710655.1| permease [Leptospira interrogans serovar Lai str. 56601]
gi|45656313|ref|YP_000399.1| hypothetical protein LIC10413 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24193889|gb|AAN47673.1| permease [Leptospira interrogans serovar Lai str. 56601]
gi|45599547|gb|AAS69036.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 386
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/361 (13%), Positives = 118/361 (32%), Gaps = 9/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F + K + ++ ++ + +N+ A+ +P II
Sbjct: 27 ILDKYLFGEFFKIFIGTVILLTGIMLLSLVNDNLRNFTATK-APRYHVALFLVYSIPKII 85
Query: 64 Q-QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ + + ELV A G+S ++++ P ++ IL+ I +L
Sbjct: 86 STTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVTPLILFGILMWIIMLLATEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K+ + + + + E + ++ +
Sbjct: 146 IVRPVNKLAKIEHDTLTEGMGTLANSVYQFHVKGKEGFYYLYFYDPDKDEINGGFNYIRL 205
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDGF 237
D + + K+KKV E+ + +P + F
Sbjct: 206 RPDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQETYEEKEYELPEEPSYF 265
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +++ ++ + T+ + + +P+M + +TLI
Sbjct: 266 KVPAGSVEEMNLFQLKEEEKRRIQKG-LAYGDVLTEKHSVFALPMMTIIVTLIGTIAGYF 324
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + I + Y + KS G++G++ P A I L + L + +
Sbjct: 325 TKKTAGVA-SLGITIGVVLIYYIFNSAGKSLGENGVIPPFAGVWITPSLFLGLCFWMFRR 383
Query: 358 K 358
Sbjct: 384 M 384
>gi|153801086|ref|ZP_01955672.1| membrane protein, putative [Vibrio cholerae MZO-3]
gi|124123319|gb|EAY42062.1| membrane protein, putative [Vibrio cholerae MZO-3]
Length = 354
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 359
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 114/356 (32%), Gaps = 1/356 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RYF K LKT + L +ID S A L
Sbjct: 4 KIWERYFIKETLKTFFFISFCFYGLYVLIDYASHSGARHHQSMMEWSELIKFYANEWILR 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++PF ++ I +LN +ELV +A GIS+ ++L PF+ +L +
Sbjct: 64 ADVLVPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANTEF 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L Q + + + + + E ++ +
Sbjct: 124 LLPNAMAASRHLRNQKEIQKNNKNKKFFVQ-HVGLKDGSTLLYQHYNFAERSFFDAYWVK 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D+ + H + +++ + +I ++ + +
Sbjct: 183 SFDEIWRFQHLSPYEQPPKGIGVGHFQRMPDNTLHKIESFESRSFPEMKFNQKILLDTLT 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + K++ S + F+ +P + + A + + RS+
Sbjct: 243 PSRELSLSTLWKRLPHSKEIESEKEAEFAASFFHKSALPWLCFFAVIAPAPFCVRYGRSH 302
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I + +F Y I+ + +L P A +P +L S ++ L +
Sbjct: 303 PIFFIYSLSLFFLVGSYLILNAALIISERQVLSPEVAIGVPFMLFSSTTLYRFLYR 358
>gi|229527563|ref|ZP_04416955.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
gi|229335195|gb|EEO00680.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
Length = 349
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|281357796|ref|ZP_06244282.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
gi|281315743|gb|EFA99770.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
Length = 371
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/373 (13%), Positives = 125/373 (33%), Gaps = 21/373 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + +L + + +L ++ + + + S +P+
Sbjct: 1 MKILNWYVTRGFLLAFFMAIGILTFGMTGANLVKVLDYVSQ--GISFFTFFEFTLYILPI 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P+ +V ++VF L+ SE+ RA G+SI Q+++P ++ + L +F + +
Sbjct: 59 ILTFTVPWAVMVAVMLVFGRLSADSEITAMRACGVSILQIVSPILIITFFLMLFCLYLQV 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----------------QQDIFIG 165
+ L+Q N + ++ N Q
Sbjct: 119 EVGPPLLGKSRTLMQTAAINQPLAIFEPGKQIEFENTIIYIDDKEGEDGIKGVQIYTLSD 178
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ + + + +K+ I+ D + + + R +
Sbjct: 179 PQTVAQDISAERGKLLVDKEKQLLIVRLFDCLVVDKKGAAEQQQDGDAGMPTRFFTQQLE 238
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ N + + ++ S + +++ K+ + E + I L +
Sbjct: 239 FSFNYGKQANE-RRISTKAKYMKLTDLMGKIRLTK-QLERDTTELEVELNQRIAFALSPI 296
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
A L+ +++ SR + + + + + I + +S L P +P I
Sbjct: 297 AFLLLGLPLAIRTSRRE-TSVGLFLSVILAGVFFLSIILCESLSSFPHLYPQYLLWLPNI 355
Query: 346 LTISLSILILLQK 358
+ L ++ +
Sbjct: 356 IFQILGAVMTYRI 368
>gi|118581150|ref|YP_902400.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118503860|gb|ABL00343.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 367
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/352 (12%), Positives = 119/352 (33%), Gaps = 8/352 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + + +++ N S L + +V + +
Sbjct: 2 IIERYIVREICAPLVVICTVLIMIFSGFSAVRFLNDAVN-GLLSGGTVVALVSLKVLIAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IP + ++ L E+ A G+S +L++ + +ILL + +
Sbjct: 61 EVLIPVTLYLAIVLALSRLYADGEITAMEAGGLSQKKLISAVLFLAILLALMVTGLSLHA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L + ++ D K + + ++ ++ A+K+ P + +
Sbjct: 121 RPWAYGKMYLLETRGQNEFDIAKVEAGRFYEL---SHNLVFFAEKLDPARNQARNVWVWE 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + + + K +V + ++ + T ++ + + +
Sbjct: 178 FGPEKRRVTSARSAFQTNGPGEGQ-KAIVFQEGSHYSLNLKTGTDHLVGFQENVLQL--E 234
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +K + + + + + + V M L+A +S R +
Sbjct: 235 PPQIPPAKYRRKAASTEHLATSTDPADIAELQWRFSTGISTVLMALLAIPLSRVAPRRGK 294
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
V I F++Y + I K++ + ++ V +L L + +L
Sbjct: 295 YGK-VVAAIILFFVIYNLSLIAKTWVEKQVVGAVPGIWWVTLLNAGLVLFLL 345
>gi|114328863|ref|YP_746020.1| hypothetical protein GbCGDNIH1_2199 [Granulibacter bethesdensis
CGDNIH1]
gi|114317037|gb|ABI63097.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 400
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/360 (14%), Positives = 111/360 (30%), Gaps = 7/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L + G + L+++ + S+ L +P +
Sbjct: 20 TLDRYVMRQLLVALVACTCGLVALIWLTQSLRFIELVVNR-GLSVFVFLKLTGLLIPSFV 78
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IIP T VV V+ L EL + RA G+S W + P ++ ++L + + ++ I
Sbjct: 79 AVIIPITTYVVVQFVYQRLAGDRELTVMRAAGLSSWVMARPALLVALLTMLLSFVLNLWI 138
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++ + +S+ + I D
Sbjct: 139 VPAAFSAFREYQWEIRNKMAAFLLQDGVFTPVSDDMIVYIRKRDADGTLHGILIDDARKA 198
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN----IPIKMDGFQK 239
I R + +V L+ + R N T N + ++
Sbjct: 199 DSHATIIAQRGRMEQGSNGAPQVVLESGSRQELDRHTGRLNILTFNENTISLEQSGKDEQ 258
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S S E++ + R E + ++ A+ + + ++ F
Sbjct: 259 RSRDANEMSLTELLHPDPSQVMARDIPKLRVEAHRRLSGPLNVLSFAVVALVSVLNGAFR 318
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + +L + + + K L+P+ I + I+ E
Sbjct: 319 RHGGLLRPGVAALVVVALLAVGLAVANAAAKLPQLIPLI--WIAAVAPGMAGAWIMFWPE 376
>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
Length = 376
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 110/358 (30%), Gaps = 9/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + +F L + + +V + +++ + S A +P +I
Sbjct: 4 FDRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLINDGH-SARIVLEFTALSLPAVIA 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V L+ SEL + +A G S W+L P +V I++ + ++ + +
Sbjct: 63 LVLPMATFAAAVYVTNRLSGDSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVLTHVLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K Q+ + + ++ S +
Sbjct: 123 PQSLKQLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVLLSDRREPE 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKF 240
+ R V L + + + + T ++ + +
Sbjct: 183 REVIYTADRAYLIRDDEGPKMVMLAGLAQTMNTTDMRLSTTNFSDFTYDLTGLITASPQK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EF 298
+ + E++ + + PL+ V LI S + F
Sbjct: 243 RRKLDAIPTTELLLNTDGIAAETGQQIGEVLEEAHMRFQGPLLCVVAALIGYSALMVGVF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR R IV + + ++ L P+ A P + ++ + ++L
Sbjct: 303 SRFGVTRQIVFAIFLLVVVKLVESAVTDPVVRNPRLWPLVYA--PSVTGLAFTWILLW 358
>gi|209964866|ref|YP_002297781.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209958332|gb|ACI98968.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 372
Score = 94.4 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/341 (15%), Positives = 114/341 (33%), Gaps = 11/341 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + T++ G +++ + + E S+ LA P +
Sbjct: 4 IDRYLLRNLAVATVFVTAGLSAAIWLTQSLRLVEMVVE-GGASLGIFFRLALLTFPTFLS 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P L + + L SELV+ RA G+S L P ++ + ++ + +
Sbjct: 63 LILPVGLLAAVLFTYNRLIMDSELVVMRAAGLSPMALARPALILAAVVALLCYTLTLFAG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ + L Q + + + + + + +
Sbjct: 123 PAAQRELVRLRQAVRSDVSAVLLREGTFNDVGTGLTVYVRERGREGALSGLLIHDLRSPG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDGFQK 239
+ R V + + ++ + ++ T+++
Sbjct: 183 VATTVVAERGRLVEVDDVP-HVVVFNGTQIKFHQDDGRTEWLEFARYTVDLQALRKELGP 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL--IAASVSLE 297
+ RS +++ F RAE + + PL+ +A T +AA + E
Sbjct: 242 RWIEPRERSLRDLVNLTDDPLDRQFFGRLRAE--LHSRLATPLLPLAFTAVGLAALLPGE 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
FSR Q R I + + + ++ I GK+ L P+
Sbjct: 300 FSRRGQGRRIALAAVGALVLQSAVLGISNLVGKNPALTPLL 340
>gi|227327171|ref|ZP_03831195.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 371
Score = 94.4 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/353 (12%), Positives = 123/353 (34%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ I + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + +F+G K H++ +
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + L Y+ + D T + G Q +
Sbjct: 181 GNARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVT 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + A +F++ + + + ++ M ++ +S+ R
Sbjct: 241 LNNSDVQQM-------DMQTLWHSDAHDARAEFHWRLTLIISVLIMAMMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G + P+ + + +++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLTYFGIAVML 345
>gi|46580072|ref|YP_010880.1| permease [Desulfovibrio vulgaris str. Hildenborough]
gi|120602470|ref|YP_966870.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|46449488|gb|AAS96139.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
gi|120562699|gb|ABM28443.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|311233929|gb|ADP86783.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
Length = 380
Score = 94.4 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 121/356 (33%), Gaps = 11/356 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
FK + L L + L+ + ++ + ++ +L VP + ++P
Sbjct: 1 MFKELVSIFLLCLGALLSLILIGRGL-QLRELFLGLDLGLTDATLLFLYLVPFFMLLVVP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ + F ++ ELV +A G+SI+Q++ +V +L ++ + + G
Sbjct: 60 VACMLSVFLTFLRMSTDRELVALKAGGVSIYQMMAAPLVFCVLCAGLSLSISLHWLSWGM 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSITIDK 186
I + + + + Q I ED +
Sbjct: 120 GNFRATIMEIANTRARIVIQPGVFNQDIPGLTLFARQVDPATGNLRQVIVEDRSRPGSTL 179
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDGFQKFS 241
A + L+ Y+ + + S L++ G +
Sbjct: 180 TIVAPEGTTATDEVRGEILFHLRDGRIYKADGENVSVLGFSEYSVRLDLDKLFKGLELGE 239
Query: 242 EQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S+ ++ + + + + + + +P + + + A ++ F
Sbjct: 240 IKPKEMSWRQLAGLDLNRYEAEMGERYVRKVLVEVHKRWALPAACIVLGIFALPLACAFE 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ ++ VA + + Y+++++ S G++G + PV P +L + + L
Sbjct: 300 -GLRRQLGVALALVMFLVYYSMLSLGLSTGEAGTVPPVVGLWAPNVLFLVAGLYGL 354
>gi|300905894|ref|ZP_07123627.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
gi|301304160|ref|ZP_07210276.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
gi|300402363|gb|EFJ85901.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
gi|300840573|gb|EFK68333.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
gi|315256878|gb|EFU36846.1| putative permease [Escherichia coli MS 85-1]
Length = 344
Score = 94.4 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 112/356 (31%), Gaps = 17/356 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETG----------------QPILTLAMILLAVPFTFTAPRS 283
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+A G+ G + + IM + G L AL + + +++ ++
Sbjct: 284 PGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 339
>gi|237744434|ref|ZP_04574915.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229431663|gb|EEO41875.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 359
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/344 (13%), Positives = 107/344 (31%), Gaps = 3/344 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIIFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGTKIAYENPVFQLKEKTFV-DNLDGYSIYVDKVDSDGKAKNIIGFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + VK + V + + N + FQ+ S
Sbjct: 179 SKDKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPNFQELS 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + + K + + + + + + V + +I +SL R
Sbjct: 239 IKIKDVEALSITELIRGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + + +G L P A P +
Sbjct: 299 SKKYSFI-LAMIIVFAYIIFLNVGIVMATAGKLNPFIATWTPNV 341
>gi|320335817|ref|YP_004172528.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319757106|gb|ADV68863.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 366
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 125/354 (35%), Gaps = 7/354 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L + L+ M+ V V L E+ + S + A L A ++P I+
Sbjct: 10 DRYVMAEILPLLVAGLVVVMLAVLVGALLEVIAPLLAK-GASPALVARLVALQLPEAIKI 68
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L ++ L+ +E+ + A G++ +L P ++ + + + ++ +
Sbjct: 69 GLPVGFLFATLLGLSRLSSDAEIKAALAGGVAPGRLFLPVLLMGVGVTVAAFVIGETLGP 128
Query: 126 SGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + +Q + + ++ + + + + +
Sbjct: 129 RAKTESLSVQRQIVLDNPRVLGLDQPGLILRDALNRAISVTRVRPGGVLEGVRVVALRES 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ I R+ + + +++ + + + + K S+
Sbjct: 189 GGPSSIITAREGHLRDSNVLELLDGQRITYQDGRPVTVIRFRRGELPVQDLQASFKTSDA 248
Query: 244 FASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ K+ + + T PL +AM A +++L RS
Sbjct: 249 PKPIDTPLPQLWAKVQT-YAQQHVNAPQETTALQRKFAEPLAALAMGFFAVALALFTFRS 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + + F Y ++ + G+SG L PV AA P +L + +++L
Sbjct: 308 G-LNVGLVWVLLLTFAYYASWSVFRVMGESGALPPVVAAWTPDVLYLVAGLVLL 360
>gi|253991457|ref|YP_003042813.1| inner membrane protein yjgp [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782907|emb|CAQ86072.1| inner membrane protein yjgp [Photorhabdus asymbiotica]
Length = 366
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/353 (14%), Positives = 126/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L EI N + L VP +
Sbjct: 2 IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILG-AAVEGNVPANLVISLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L + + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ + N + ++ ++IG+ +++
Sbjct: 121 MPWSSKYQEQVLADARANPSLAAIMEGKFKPSNDGNLVLYIGSVHGDKFKNVFLAQLRPV 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+++ ++ + + K L Y+ + D T N + G Q
Sbjct: 181 DNQRPSVVISDGGHMVERPDGKQVVILNHGTRYEGTAMLRDFRITEFNDYQAVVGHQASV 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
I + ++K + F++ + + L ++ M ++ +S+ R
Sbjct: 241 VDGDKVEQKSIAQLWRDNDKDSRAE-------FHWRLTLVLSVLIMAMMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G G L P+ + L++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPLIWMWTVNGAYLMLALVL 345
>gi|162149095|ref|YP_001603556.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545162|ref|YP_002277391.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787672|emb|CAP57268.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209532839|gb|ACI52776.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 398
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/358 (14%), Positives = 107/358 (29%), Gaps = 12/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L G L+++ + + E S+ L + VP +
Sbjct: 21 LDRYVLRQLLVALLATTGGLSALIWLTQSLHFVSLVVER-GLSLRVFIGLTSLLVPSFVA 79
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P T +V V+ L EL + RA G+S + + ++ + + + +++ I
Sbjct: 80 VILPITTFIVVQFVYQRLAGDRELTVMRAAGLSPFFIARAGLLCATISVVSCMILNIWIV 139
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
Q ++ + +S + + I +
Sbjct: 140 PLSFHAFKQYEFQIRNRMAAFMLQEGVFTPVSPTMTVYVRSRDRDGTLHGIVVEDDRQPD 199
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDGFQKF 240
+ + R + +V L + R N T + G Q
Sbjct: 200 NPSTVLAQRGTMLVVDNQP-RVVLYDGSRQEIDRKSGRLNVLTFSRNTIDLTSSRGDQAR 258
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE--F 298
S +E++ + + + + + P + ++ L F
Sbjct: 259 FRDATEMSLHELLHP--DPQEVAPRDRGKFAVEAWRRLTAPFTAFSFAMVGLVAVLRGAF 316
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR A I S L + ++++ + + IL L+L
Sbjct: 317 SRHGNIIRP-AVAILSVVSLLALSLMVQNLASRNT-SLIPLMWVEAILPGIACALMLF 372
>gi|254225899|ref|ZP_04919501.1| membrane protein, putative [Vibrio cholerae V51]
gi|125621525|gb|EAZ49857.1| membrane protein, putative [Vibrio cholerae V51]
Length = 334
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 7/338 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ D+ + + + + +Y +P + N + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A R + + +N + RA+ + + I + + + +T++ +S R +
Sbjct: 241 SAERDWEALPTLSLLNN-----ADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ I + ++ KS + G L +
Sbjct: 296 FAK-MGPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|238897461|ref|YP_002923138.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465216|gb|ACQ66990.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 364
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/351 (11%), Positives = 114/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ +Y K LKT + L + F L I + + + L +
Sbjct: 2 VITKYLIKEILKTQVAILFILSFIFFSQKLVTILDDIIN-HDIPAHLIFSLLGLGFAKMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P ++ + L SE++ A G+ +L+ +V + L +F + +
Sbjct: 61 ELILPLSLFFALLMTYGKLYNESEIIAMYACGVGKTRLIKVALVLAALTSLFATINVFYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K +I + + N + + + +FI + + I+
Sbjct: 121 SPWSVKHEKKIINEERVNPGLSALVKGQFQSSPDGKIVLFIQDIQNKKFHKIFLAQRESN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ ++ L + +
Sbjct: 181 HTQRPTVVVANSGYISAPAPGIQLLT-LNHGMNYEGIPPLGDFRITYFNHYQAVISRKSV 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + S ++ + ++ + + + +V M +A +S R +
Sbjct: 240 TKNSNTAQQMSMSSLWE----ANDPDTRAELHWRLTLIVSVVIMAFMAVPLSQVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S + L P+ + L L+I++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSTLRSNAGNNRLDPLIWLWLVNGLYTILAIIL 345
>gi|256027205|ref|ZP_05441039.1| hypothetical protein PrD11_04296 [Fusobacterium sp. D11]
gi|260494013|ref|ZP_05814144.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289765182|ref|ZP_06524560.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|260198159|gb|EEW95675.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289716737|gb|EFD80749.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 359
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/344 (13%), Positives = 107/344 (31%), Gaps = 3/344 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIVFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGTKIAYENPVFQLKEKTFI-DNLDGYSIYVDKVDSDGKAKNIIGFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + VK + V + + N + FQ+ S
Sbjct: 179 SKDKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPNFQELS 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + + K + + + + + + V + +I +SL R
Sbjct: 239 IKIKDVEALSITELIRGLKKIEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + + +G L P A P +
Sbjct: 299 SKKYSFI-LAMIIVFAYIIFLNVGIVMATAGKLNPFIATWTPNV 341
>gi|296125361|ref|YP_003632613.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
gi|296017177|gb|ADG70414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
Length = 417
Score = 94.0 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 61/413 (14%), Positives = 123/413 (29%), Gaps = 59/413 (14%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y + L +L VFVI L ++ + +P
Sbjct: 1 MKKI-TKYIILETIGPFLAGIL-FFTFVFVIQLLPELIRLIMNNGAPLLMSLETFVYMLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I IP L+ +I+ + L+ +E+++ RA+G ++ P ++ +F++
Sbjct: 59 FNIAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGFFTFMFSLFFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I + LI + + + +IS+ I +++
Sbjct: 119 NVIMSESNYRYRALISYMVNIRPSIAVGKLEFTEISDMGFSIGAKYADDKSISNVVIYDK 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S T + A + L V + N T+ + ++ +
Sbjct: 179 SDTKRVITAKYGLWKNNEANSQVVTLTLYDGVVQEMPNYGFVTNDYTVFDSMDINIIRNV 238
Query: 241 S------EQFASRSFYEIIKKMSFSNKSNIFH---------------------------- 266
S +EI+KK+ + +
Sbjct: 239 STLTSHERGLREMPSWEILKKIKEAKSNANKSVDEQITGMINNSYNNVKNTGIDITSFSN 298
Query: 267 ----------------------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
Y +FY I IP + M LI A + + RS +
Sbjct: 299 EYIKTNSAELVSIREKAIEESVPYFYYVEFYKFISIPAACLFMVLIGAPLGIVGKRSGK- 357
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + Y +IT + + P+ A P I+ + +++
Sbjct: 358 GFGFGISVIVVVIYYLLITAAELLAGGKKVPPILAMWFPNIVLAIMGGFFMVR 410
>gi|328948913|ref|YP_004366250.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
gi|328449237|gb|AEB14953.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
Length = 356
Score = 94.0 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 120/354 (33%), Gaps = 10/354 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K + + ++ ++++ + DL N S A++ +P + +
Sbjct: 6 YMLKRFFPVFIGAVMFFVLVLCLTDLFMNLWNYISK-NVSSRDVALILIYYIPKAVWYAV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L + + +EL+ A GIS+++ P + ++ + + + I
Sbjct: 65 PIAMLFATAYMLSDFYARNELLAVFASGISLFKFSVPLLTVAVAMSFALFIFEDNIVVPS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L + + I I ++ A + + +
Sbjct: 125 FSKKTQLQESVLSKEKSLNNSKIV---IMAEGGNVIYKADFFNNKAESLSKLYVLFRTED 181
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPIKMDGFQKFSEQ 243
K A A N+ KL+ VEY++ + + + F+ +
Sbjct: 182 KKPDAVVYAQKAFWKNNSWKLENAVEYKFQDENFLACVLEKRLEERLLEPPETFRNNTIS 241
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ E + + K+ + ++ +Y P ++ + +A +S +R N
Sbjct: 242 VERVNTKEAREYIEHLEKAGLPSAEE-KSVYYKKYSFPFVVFIVVFLAIGLS-GKTRKNV 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +A I + + Y + K + P+ A PV+L I +S ++L
Sbjct: 300 LLVSLAMSITAVVLFYVFQMVTMLMAKFQAIPPLFGAWSPVVLFIIISCVLLKY 353
>gi|163746448|ref|ZP_02153806.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
gi|161380333|gb|EDQ04744.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
Length = 377
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/360 (13%), Positives = 115/360 (31%), Gaps = 13/360 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L +F L + L ++ + +++ S A +P +I
Sbjct: 4 IDRYILSQLLVMFGFFALVLVALFWINRAVVLFDRLIG-DGQSALVFLEFTALGLPKLIV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T ++ V ++ SEL + +A G W+L P V + +G+ + + +
Sbjct: 63 TVLPIATFAASVYVTNRMSGESELTVLQAAGSGPWRLARPVFVFGLCVGLMMTALSHFLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK------ILPENHIWED 178
+ + N Q ++ S+ + + D
Sbjct: 123 PMAQGQLKQREAEISRNLTAQLLTEGTFLHPSDEVTFYTRAIDNDGVLRDVFLSDRRKAD 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
I + + D I+ N + + + + +I +
Sbjct: 183 EGVIYTAAEAYLARNGDNTTLIMLNGMAQRLDTEQNRL--ATAKFRDFSFDISPLVSTDD 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSL 296
+ +S +++ + + + + PL + +I + +
Sbjct: 241 ATDQSVSSMVTPDLLWDWAGLAAQLDTAPGIIAEELHSRLAQPLFCIVAAMIGFATLILG 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
FSR R V + T++ ++ L P+ A +P ++ L++ +L
Sbjct: 301 GFSRFGVWREAVIAFGLLIAIDGLRGTLVVQIRETAALWPL--AYLPSLIGAVLTLAMLW 358
>gi|209964085|ref|YP_002297000.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209957551|gb|ACI98187.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 414
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/362 (12%), Positives = 108/362 (29%), Gaps = 7/362 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY K L+ M+ + + + + + + +AA VP +
Sbjct: 22 LIDRYILTETAKPLALSLVVVMLALLLERILRLFDLLANHGG-PFQLVLRMAANLVPHYL 80
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + VV +EL ++ G+S+ ++ PF+ L +F+VL+ I
Sbjct: 81 GLALPAAFFISMFVVVARFGDENELDALQSSGLSVPRITRPFLWLGTGLMVFSVLLFGFI 140
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-----ISNPQQDIFIGAKKILPENHIWED 178
+ + ++ G D
Sbjct: 141 QPYSRYAYQAIHYAVVNAAWDATVPQSAFVDAGQGVTITADMVDPTGRNLERVFVQQLRD 200
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + D I+ ++ + TL+ ++
Sbjct: 201 GEEWVTTAESGRLGVSDDRKRILLTLDNGVQVRTRPDATVEVVRFGRLTLDREFTLEAPP 260
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ R + + E +F+ +V + L M L+A + +
Sbjct: 261 FRPRGGSERELTLVELWQEMHQPITLVPRGTLEAEFHARLVRAVSLPLMPLLALPMGMAA 320
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + +A + + I + +S G + +P ++ L + +
Sbjct: 321 KR-ARRGLGIALAAAILVLYHHSIQMGESLADIGRVPAALGIWVPFVVFALLCGWLFYRT 379
Query: 359 ED 360
+D
Sbjct: 380 QD 381
>gi|332297891|ref|YP_004439813.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
gi|332180994|gb|AEE16682.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
Length = 366
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y ++ ++ + L +++ +++L Q + + VP +
Sbjct: 12 TLLSYLYRRFMPVFIGALSFFSLVLILVELLMNLWQFISAQ-VPAADIVRVMLLYVPKTV 70
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L + V + +EL A G+S+++ P +V S++L F + +
Sbjct: 71 SFALPLAILFASSYVLSDFYAKNELTAVFASGVSLFRFTLPLLVFSVVLSAFMFFFEDRV 130
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+L Q+ + + +D I + + A + ++
Sbjct: 131 VVPAYAQKTELQQKLLNQEKSKNNDRIVVIAERGA---VVYKADFYDDQASRLFTLYAVV 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDGFQK 239
+ + AD A+ L V+Y + T + + F+
Sbjct: 188 RNGDKSLRAVLRADSAVWNGSSWTLSGAVQYTMRGDTLIAEDPDPEITALLTEPPETFRN 247
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + E ++ ++ + Y+ +V + + + +
Sbjct: 248 NTVSVETVTASEARSYITHLRRAGLPTAE--ALSQYYKKFSFPFVVFIVVFLSVGLSGKT 305
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R N I + I + Y + K G + P+A A PVIL I LS ++L
Sbjct: 306 RKNVLLISLVLCIGAAVAFYVTQMVTMLLAKFGYISPLAGAWFPVILFIFLSGVLL 361
>gi|170746990|ref|YP_001753250.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653512|gb|ACB22567.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
Length = 386
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 119/359 (33%), Gaps = 10/359 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L TL L+G +++ + + ++ + +P ++
Sbjct: 4 IERYIFRIALGATLACLIGLTGTIWLTQALRELDLVTAK-GQTLLVFLFVTGLSLPTLVV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + I LN SEL++ A G+ LL PF+ ++ + ++ +
Sbjct: 63 VIAPVALFIGTIYALNKLNGDSELIVMSAAGMPPRSLLRPFLTLALFVSFLVGFLVVVVM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + D+I + + + + Q+ N F ++
Sbjct: 123 PASFQELRDVITRVRGDFIANVVKEGQFTQLDNGITFHFRERGPGGTLKGLFIQDRREAG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGFQK 239
K + R +A + + L+ +Q R D T+++
Sbjct: 183 KTKVYLAERGNAV-DVDGQSYLILENGSVHQQQRESRDSSILTFERYTIDLAAFAPPDSD 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ RS +++ + R + + + L +A+ IA + +L
Sbjct: 242 TIYKPRERSTAQLL-FPDTTEGYYKLQKGRFRAELHDRLSACLYPLALVFIAFA-ALGDP 299
Query: 300 RSNQPRIIVAY-GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + VA G + I + V A ++ I LS L++
Sbjct: 300 RTTRQGRGVAIAGAIVAVVALRIGGFAAVSAAARSPAAVLAVYSVPLVAILLSSLLIFY 358
>gi|241761653|ref|ZP_04759740.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260754018|ref|YP_003226911.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856464|ref|YP_163128.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241373961|gb|EER63494.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258553381|gb|ACV76327.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775468|gb|AAV90017.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 403
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 117/355 (32%), Gaps = 12/355 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + + L+ + +L+ + + ++ + + +S + A +P +
Sbjct: 7 IDRYLIRLITVPLVTTLIVSAMLMVLDKMLKLFDFVANQGG-PVSVVWRMLANMLPEYMS 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP + ++ F L SEL + RA+GIS +LL + + + + ++ I
Sbjct: 66 LGIPIGLTLGILLAFRKLALQSELDVFRAVGISYSRLLRIPYIFAFFFALVNLAIVGYIE 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
DL + + + + ++ G++ +
Sbjct: 126 PYSHYAYEDLRYELRSGALGAAIKVGEFTKLGTHMTLRVEGSQDSGRNLSGIFGTSENPE 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK---------MD 235
+ + + + + V L ++ D + + ++
Sbjct: 186 NGQKLTVTADNGRFMPSDDPNVILLRLNHGLLIHNRPDFTTPRVLTFENHDMPIKLPAVE 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F+ + E+ + + + +F +V + + ++A +++
Sbjct: 246 SFRGRDGNQQEMTLTELF-FILHQKHLPKKLRNQLQANLHFRLVEVATMFLLPMLALTLA 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ RS + V I + + ++ G G + PV +P IL L
Sbjct: 305 IPPKRSTS-SLGVFLSILILVTDHKLNQYCQTIGGLGKINPVLMMWLPFILFSLL 358
>gi|226946453|ref|YP_002801526.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226721380|gb|ACO80551.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 357
Score = 93.6 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/358 (9%), Positives = 95/358 (26%), Gaps = 13/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L L + + S + +V +
Sbjct: 1 MLLIERYVISEARRPLLVMLGILTSIFAAYSAERYLGEAAN-GTLSPEVVFDIVVYKVMI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + L SE+ A G+S +L + ++ + + +
Sbjct: 60 ALEVLVPVALYVSVALGLGRLYHDSEITAVAAAGMSPLRLYGAVAILALPIAVGVTALSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW-MQISNPQQDIFIGAKKILPENHIWEDFT 180
L Q+ K D + + N + + + F
Sbjct: 120 YGRPWAYANAYQLEQESKTELDIDHLLAERFNINAENGRMILAERVDRATDSLQDVLIFD 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-IPIKMDGFQK 239
+ + V++ Y + I + +
Sbjct: 180 GGESRTRLYRSQEARIADPDPDDPVVEMTNGTAYSLQHDGTQDKRIEFKRLNIHLQPLET 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E + ++ ++ + + + + + L+A +S
Sbjct: 240 NMESRRKAASWQTLEASAGLPEQAEL---------QWRESRGVSTFILALLAIPLSRTAP 290
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + ++ + Y I KS +G L + + + + ++++
Sbjct: 291 RRGRFATLLPVTAVYAVIFYA-GDICKSLVGNGSLPLTPGLWLVPLAMGLVLLALIVR 347
>gi|182413236|ref|YP_001818302.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
gi|177840450|gb|ACB74702.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
Length = 384
Score = 93.2 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/383 (11%), Positives = 103/383 (26%), Gaps = 26/383 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY FK L T + +V V ++ S+ A L T +PL
Sbjct: 1 MNLLDRYLFKSVLFTCAAAVALFTFIVLVPNVLRDMLAYVLTGQLSLLVFARLVFTLLPL 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L ++ L+ SE+ RA+G+SI +++ P ++ + + + +
Sbjct: 61 ALSYALPMGMLTGVLLTLGRLSADSEVTAMRAVGLSIPRIVRPILLLAAMGSALGIYLNF 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-------FIGAKKILPENH 174
+++ + + +
Sbjct: 121 ESMPRARVEYERGFAAAIQANPLNLIVPKTFIRSFPGYVVYVGEKQGGIMRDFWLWELDA 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + L + + E ++
Sbjct: 181 EGRVERFVRAASGRFDYDEPNNSLMLTLTQAKVESRAKENPERFEKPQLVASLGQWGPIQ 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSN------------------IFHNYRAETQFYF 276
+F + A + + F+
Sbjct: 241 LSLNRFFGRNAGIRMKQEWMTYGQLQAEGERLAAQPLPADAAEAKQARRTRMKLAIVFHD 300
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I L + ++ LI + ++ SR A + + Y + ++K + P
Sbjct: 301 KINTALAVFSLALIGVPLGIKVSRRETSA-NFAVAVGITLVYYLMTVVIKVLDRHPEYRP 359
Query: 337 VAAALIPVILTISLSILILLQKE 359
+P + I + ++ + E
Sbjct: 360 DLLLWLPNFILIGFGLWLMARIE 382
>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 382
Score = 93.2 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 45/365 (12%), Positives = 114/365 (31%), Gaps = 14/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP I RY ++ +F L + + ++ + Q+ + A +P
Sbjct: 1 MPRI-DRYILSQFMTLFGFFALVLVSVYWINRAVSLFEQLIS-DGQTALVVLEFTALTLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L+I ++P + L+ SELV +A G+S W++ P +V +L+ + L++
Sbjct: 59 LVISVVLPIAAFAASAYGTNRLSSESELVAMQATGMSPWRMARPVLVFGVLVALMVALLV 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENH 174
+ + D + N Q + E+
Sbjct: 119 HAVVPMARGRLADRQAEIAQNVTAQFLRAGAFQYPVRGVTLYIRDIAADGRLVDFFLEDA 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D + + ++ + ++ V+ + + + ++ +
Sbjct: 179 RNPDSQTTYTSTEALLVRTDEGPRLVMMQGMVQNLRHAGNRQSLSVTRFSELAYDLGTLI 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL-MLVAMTLIAAS 293
D + + S ++ + RA + + + P VA L
Sbjct: 239 DTGESRKRDLRAYSTLRLLDPDPELLAATGATRDRALAEAHERLAKPFQAPVAALLGFGM 298
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM--KSFGKSGILLPVAAALIPVILTISLS 351
+ L V + + + ++ + T + G + + + ++ ++
Sbjct: 299 LLLGGFSRFGVWRQVVWAVVALIVVQFLSTAAENQVAGNASRWPLI---YVSPLVGAAIC 355
Query: 352 ILILL 356
+L
Sbjct: 356 CAVLW 360
>gi|262274979|ref|ZP_06052790.1| putative permease [Grimontia hollisae CIP 101886]
gi|262221542|gb|EEY72856.1| putative permease [Grimontia hollisae CIP 101886]
Length = 366
Score = 93.2 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 121/354 (34%), Gaps = 9/354 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +KT L L ++ F + + + L +P +
Sbjct: 2 IIVRYLIRETVKTQLAVLFVLFLVFFSQKFIRVLANATD-GSIPGGDVLTLVGLYMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ G +
Sbjct: 61 MLMLPLSLYIGILITFGRLYAESEITVMNATGIGNKFLIRAALYLAIITGSVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL--PENHIWEDFTS 181
+ +++ + + + + Q +++ + ++
Sbjct: 121 TPWANDKEVKVMESLEADTGLELLVQGKIQTTPDGQAVVYVNDITGDGKDLHKVFIAQPV 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + ++ + + + L +Y +P + T + +
Sbjct: 181 PRGTLRPNVVVAEKGFISELPDGRQVLDLNNGIRYEGVPTLLDYTVTDYENYQVLIGQRE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +R + + ++ + + RA+ + + I + L + MT+I +S R
Sbjct: 241 VRQKNRDWDAMPTQILVNE-----SSPRAQAELQWRISLVLCIPLMTMIVVPLSAVNPRQ 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + + I+ KS + G L ++ + ++++++
Sbjct: 296 GRFAK-LFPAVLIYLAYFLSISAAKSAVEEGKLPAEIGLWSVNLIALLVALMLI 348
>gi|294670274|ref|ZP_06735167.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308011|gb|EFE49254.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 348
Score = 93.2 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 105/312 (33%), Gaps = 12/312 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY K TTLY + + L D+ +GE Y+ + ++P
Sbjct: 3 LIARYLIKQLSITTLYAMFALLALYSFFDIVAEVGGVGEGG-YTGIKMMQYVLLQIPDHA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P L+ ++ L SE+ + + G+S ++ + ++ T L+ +
Sbjct: 62 YQMMPLAVLIGGLIALSQLASNSEMTVIKTSGMSTKNIIAILLGFGLIFAAATALLGESV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + +L NG W++ N ++ + + +
Sbjct: 122 APAANRYAQNLKTT-AKNGKISTGAEGLWIKEQNNIINV-----REMLPDQSLRGIKVFR 175
Query: 184 IDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQK 239
D+ K+ A+ A+I + KL V + I+
Sbjct: 176 HDQNFKLAESWQAESAVIAADGGWKLANVRRSILDGDRVRTEKHDGEYWQAGIRGSLLDV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + N + +++ ++ P+ V M L+A + + + +
Sbjct: 236 LLVNPNQMSLTALTAYIKHLED-NKQQADNYKIEWWRKLMYPVATVVMALVALAFTPQST 294
Query: 300 RSNQPRIIVAYG 311
R + +
Sbjct: 295 RHGNMGLKLLPA 306
>gi|300870020|ref|YP_003784891.1| putative permease [Brachyspira pilosicoli 95/1000]
gi|300687719|gb|ADK30390.1| putative permease, YjgP/YjgQ family [Brachyspira pilosicoli
95/1000]
Length = 356
Score = 93.2 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 115/354 (32%), Gaps = 2/354 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L + L+ +ILV + DL+ + E P ++ A R P
Sbjct: 1 MKKLNSYLLKEFLSMFVGSLILFVILVTIADLSSKLSYYTEHPE-NMKYFITYHAARTPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P + + V + E++ + GIS+++ +P + I L + +
Sbjct: 60 NLYYLFPIALMFSSTYVLGTFVKNKEMLAVQNSGISLFKFSSPIFIIVIALCLGLIGFWQ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A KI + + + + + + +N I +
Sbjct: 120 FVAAPMNKISFEANDLGRGHKKGEYTGSLNIFGANNYIYFIENFNFNDNYLTNTVIVKLK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+I + + E+ + K T + + +
Sbjct: 180 EDGAIDMRISSPSVRWNDNEKKWYAETGILAEFTDKKNISVKEITNYPLDVLERPEHFMN 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
K + ET F++ I + L+A+ S +FS
Sbjct: 240 RPALDSMSLTEEMHWIKLRKEVNLNTNTLETDFHYRISYCFSGFIIVLLASLFS-KFSTQ 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + I + Y+I+ + +S G G + P AA +P I+ L L
Sbjct: 299 SVLVVSLVMVIMVALVYYSILMMFRSMGDGGNMNPFIAAWMPNIIFAGLCFLAF 352
>gi|291296584|ref|YP_003507982.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471543|gb|ADD28962.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 377
Score = 93.2 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 47/371 (12%), Positives = 107/371 (28%), Gaps = 24/371 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L+ L + + +L + + +S A +VP
Sbjct: 4 LDRYILREAWPVFLFGLALYVGFGLISNL---LPRAQWMGTAELSSILKWLALQVPYATV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ F L R +EL++ +A GIS+ + PF++G +LL F++ + +
Sbjct: 61 QAMPIAGLLAVMLAFGRLARENELLVMQAGGISVLRTARPFLLGGLLLSGFSLALSEWVV 120
Query: 125 TSGEKI-GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + Q + + + + + +
Sbjct: 121 PWANRATALVYWNELIPERTPQFNLVGRELTVGEYILRYEGFDPAKDEFQRVRLERWQNQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------------------- 224
+ I+ D
Sbjct: 181 TMTVILAQTARLQGQRIVLRDYRVFTLDFAQLPLPEFASLEQAEAGLQQIFRAQNIGQPG 240
Query: 225 -STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
T+ + + + + + E + + I L
Sbjct: 241 AELTVRLSRSREDLEVQYAGGGFEVPVPLSEWWRKLQDPRTPPRELREAKAQWHAAIALA 300
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
L + ++ ++ + R+ P + + Y + K SG L P AA
Sbjct: 301 LANLMVLVLALPVAVRRATSPGTALGLALVLTIAYYVAFSAGKVLALSGPLPPELAAWGA 360
Query: 344 VILTISLSILI 354
+L +++ +
Sbjct: 361 NLLGVAVGYGL 371
>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
Length = 409
Score = 93.2 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 52/366 (14%), Positives = 118/366 (32%), Gaps = 14/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY FK L L L + + + N S+ + ++ +P +
Sbjct: 21 IVSRYLFKEILSPFAINTLFFTFLFLMAKIL-FITNLVVNYNMSLPKIGLMLLYIIPNFL 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP ++ ++ F + +E++ + GISI+ LL P ++ + I T L+
Sbjct: 80 VFVIPMSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISLYA 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI---------GAKKILPENH 174
G L + + + + +
Sbjct: 140 IPWGRLSIEKLTMEIAQSNFEIGLKERTFNDNFKDIMLYVNKVDLKKDELIDVFVEDGRS 199
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T I + + +Y+ + I D L++
Sbjct: 200 EDMASTIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSVNSIGFDTYDINLDLKNAF 259
Query: 235 DGFQKF--SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+K + FYE++ + N + A + + +P + +++
Sbjct: 260 SEMEKTGQRKNEKKMYFYELLDYIDSFKIKNSRYYN-ALFELHKKFSVPFACFVLGILSV 318
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ +S + G+ + Y I+++ + G++G P P IL S+ I
Sbjct: 319 ALG-TQLKSATRSFGLGLGLIFFLLYYLILSVGYALGETGFYPPFIGMWAPNILIGSIGI 377
Query: 353 LILLQK 358
+ ++
Sbjct: 378 YLFIRT 383
>gi|19704366|ref|NP_603928.1| hypothetical protein FN1031 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327426|ref|ZP_06869973.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19714618|gb|AAL95227.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296155439|gb|EFG96209.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 359
Score = 92.8 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/343 (13%), Positives = 104/343 (30%), Gaps = 3/343 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGTKIAYENPVFQLKEKTFI-DNLDEYSIYVDEVSSDGKAKNIIAFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + +K + V + + + FQ +
Sbjct: 179 PEDKNKFPMVLTGEEAFWKDSAIIIKESQFVSFDEKGKKNLVGTFDEKRVVLTAYFQDLN 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ II + K + + + + + + V + +I +SL R
Sbjct: 239 IKIKDVEALSIIDLIKGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ + F + I +G L P A P
Sbjct: 299 SKK-YSFVLAMIIVFAYIIFLNIGIVMATAGKLNPFIATWTPN 340
>gi|34763639|ref|ZP_00144568.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|294785395|ref|ZP_06750683.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
gi|27886692|gb|EAA23836.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|294487109|gb|EFG34471.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
Length = 359
Score = 92.8 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/344 (12%), Positives = 105/344 (30%), Gaps = 3/344 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGAKIAYENPVFQLKEKTFI-DNLDEYSIYVDKVSSDGKAKNIIAFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + +K + V + + + FQ +
Sbjct: 179 PEDKNKFPMVLTGEEAFWKDSAIILKESQFVSFDETGKKNLVGTFDEKKVVLTAYFQDLN 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + K + + + + + + + + +I +SL R
Sbjct: 239 IKIKDVEALSITDLIKGIKKVEATEVIKYKIEIFRKLALVFSTIPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + I +G L P A P +
Sbjct: 299 SKKYSFI-LAMIIVFAYIIFLNIGIVMATAGKLNPFIATWTPNV 341
>gi|254446201|ref|ZP_05059677.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198260509|gb|EDY84817.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 392
Score = 92.8 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/382 (12%), Positives = 113/382 (29%), Gaps = 25/382 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY T+L +L +V + + M ++ L +P +
Sbjct: 2 LFHRYILWNVAVTSLGAILMFAFIVLLGEFMRDLFGMLAEGQVTVGTCFRLVGLLLPYVF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L ++ L+ E+V RA G+SI +L + V +IL + ++ V
Sbjct: 62 VHALPMGLLTGIMISMGRLSSQGEVVALRASGVSIARLASSVVFLAILGVVTSIAVNFEF 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---------PQQDIFIGAKKILPENH 174
I + G + +++ + L +
Sbjct: 122 GPRAINAYRGEIAEAVRTGPLRFIIPRKFVKDFPGFVVYAGAKEDDVLRELWIWKLDDGG 181
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + L + K+ + I + + + + +
Sbjct: 182 RTTSLIKAESGTLELDEYEQTLRLLLRSGSIAKMDSKDPEDFSEIRGELSFGSFPLEFPI 241
Query: 235 DGFQKFSEQFASR------SFYEIIKKMSFSNKSNIFHNYRAE---------TQFYFLIV 279
D + + +++ I R E F+ +
Sbjct: 242 DSILEKKPRRVKMYWLVGGELMSEWRRLDKLLSGEIDSEVRREAARMLAEAKMAFHEKLA 301
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+ +++ L+A + + R + + G + Y + ++ G G+ P
Sbjct: 302 AGVSVLSFALMAIPLGISVQRKETSA-NLGIALGLGVLYYLMTALIGWGGGQGMPFPHLL 360
Query: 340 ALIPVILTISLSILILLQKEDG 361
IP L + + ++ + + G
Sbjct: 361 YWIPNFLLQGIGLWLIYRLDHG 382
>gi|42526554|ref|NP_971652.1| hypothetical protein TDE1044 [Treponema denticola ATCC 35405]
gi|41816747|gb|AAS11533.1| membrane protein, putative [Treponema denticola ATCC 35405]
Length = 357
Score = 92.8 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 114/358 (31%), Gaps = 10/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K ++ T + +L ++L+ + DL + + +P
Sbjct: 1 MKLLQRYLLKLFIPTFVVAMLFFILLLQLGDLFANIVAYLQ-NGAQFKDIVKVMWLYIPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P L NL +EL + GIS+ + P +V + + +
Sbjct: 60 CIAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFED 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L ++ + + + + EN +
Sbjct: 120 NVVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADY---FNAENQTLANAYI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN----IPIKMDGF 237
I D+ + + + D+ Y++ + + F
Sbjct: 177 IVRDEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANF 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
QK E + ++ K+ + Y A ++++ P + + + S+ +
Sbjct: 237 QKNLSSVDEMRISEAKEFIAALKKNGLP-YYEALSKYHRRFSFPFTIFIVLFFSISLGGK 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F ++ + + + + + Y + K + P+A A P+ + LSI +L
Sbjct: 296 FKKNI-LLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSIFLL 352
>gi|300114327|ref|YP_003760902.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
gi|299540264|gb|ADJ28581.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
Length = 383
Score = 92.5 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/358 (9%), Positives = 102/358 (28%), Gaps = 9/358 (2%)
Query: 1 MPG--ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I+ RY K L +++ I +Q + L+
Sbjct: 1 MLKFLIVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATK-GKVPGEAILALSGYE 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ ++P + + ++ + +E++ A G+S LL + ++L I
Sbjct: 60 AIGALVLLLPLASFLAVLLALGRMGADNEVIALFACGVSRRHLLRVVLTFGLVLAIGVGS 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + + G L QQ + + + + Q+ + +
Sbjct: 120 ISLYLGPAASAEGYRLKQQALLAAETSGLVAGNFKESQHGQRVFYAESLTEDGLGMKNVF 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+K L Y+Y + +
Sbjct: 180 IQVWEPTQKTLFRAATGHLQTDEGTGDKHLILEDGYRYDLMGEEVGIRIFRFERH----- 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + I + + + + + I +P+ + + ++A ++
Sbjct: 235 GILVKKGGMQEFRIRHQTLPTLTLWEMGAPKDIAEIQWRISMPITTLLLVMLAVPLARSG 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + + ++ I +++ + ++ L + + ++ L
Sbjct: 295 PRQGRYA-GLLPAVLVYVIYSNMLGIARNWVEHEVIPAFLGLWWIHALMLLVVLISLW 351
>gi|325278209|ref|ZP_08143702.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096649|gb|EGB95002.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 371
Score = 92.5 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 112/349 (32%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK--------ILPENHI 175
A G +I Q + + + + + + +
Sbjct: 121 APLGVAQVQQIIAQQDTLTEFDTLVPGRFQMLRDGSRVTYTEQLSDDRVKLGGVFISEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + + ++ N + L+ Y D + + +
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ R + + + R + + + +P+++ +TL+A +S
Sbjct: 241 PKPEVAEEVTER------EAIPTLDLFGKTD-LRERAELQWRLSLPILVFVVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + I T++ ++ + G L
Sbjct: 294 RVNPRQGR-FLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341
>gi|153827727|ref|ZP_01980394.1| conserved permease [Vibrio cholerae MZO-2]
gi|149737798|gb|EDM52703.1| conserved permease [Vibrio cholerae MZO-2]
Length = 256
Score = 92.5 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 2/258 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++W
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + L ++V + D
Sbjct: 180 NKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVV 238
Query: 241 SEQFASRSFYEIIKKMSF 258
+ + S + + +
Sbjct: 239 TVKPEELSLTGLSDYVHY 256
>gi|237741965|ref|ZP_04572446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256845305|ref|ZP_05550763.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|229429613|gb|EEO39825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256718864|gb|EEU32419.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 359
Score = 92.5 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 45/344 (13%), Positives = 105/344 (30%), Gaps = 3/344 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + + + + + S+ L + +P
Sbjct: 1 MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVK-GISVFDVLRLLSFYIPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 60 ILTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + + I++ + F
Sbjct: 120 SIIPRSFIKLKYVGAKIAYENPVFQLKEKTFI-DNLDEYSIYVDKVSSDGKAKNIIAFEK 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + VK + V + + + FQ +
Sbjct: 179 PEDKNKFPMVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDEKKVVLTAYFQDLN 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I + K + + + + + + V + +I +SL R
Sbjct: 239 IKIKDVEALSITDLIKGIKKIEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRI 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + I +G L P A P +
Sbjct: 299 SKKYSFI-LAMIIIFAYIIFLNIGIVMASAGKLNPFIATWTPNV 341
>gi|304311789|ref|YP_003811387.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
gi|301797522|emb|CBL45742.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
Length = 369
Score = 92.5 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/351 (10%), Positives = 115/351 (32%), Gaps = 4/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L TTL ++++ + + + + + ++P +
Sbjct: 2 IIYRYLSRQLLVTTLAVTGVLVLILMGGRFIKYLGGAAD-GVLTGALIFWVMLYKLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + +E+V+ A G+S L+ ++ ++ + + N +
Sbjct: 61 ELILPLGLFLGILLSYGRMYLENEMVVLEACGMSRGALVKHTLMPALCTALIVGFIANYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + K + + N +I + +
Sbjct: 121 SPLCNTKAQTMLDEQKRKSALELLSPGQFHATRNAMTVTYIEDIDGKHKEMQNLFIVNYN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
KI + ++ + +V + R N +
Sbjct: 181 QANPEKIEITRAKRGDYQIHEDTGARYLVMKEGYRFEGSAGMAKFNRTAF--DVYQLKLD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
E + + + + A + + + +P+++ + +A +S R +
Sbjct: 239 PPRPLEIEGQYTLMSDAQLVLEGSLAARAELQWRMALPVLVPIIAYLAVILSKVNPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + +++ +K+ G + P + I L++ +
Sbjct: 299 Y-MKLLPSIVLYLVYLSLLLAVKNKIAKGKMDPELSLWAVHIAFFLLAVFM 348
>gi|94987324|ref|YP_595257.1| permease [Lawsonia intracellularis PHE/MN1-00]
gi|94731573|emb|CAJ54936.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
Length = 384
Score = 92.5 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 112/361 (31%), Gaps = 7/361 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L R F+ + + L+ + + I +L + VP
Sbjct: 1 MIPLLQRQIFRESTYIFFLVVGALLTLIIINRAI-QMRDLFIGLKLEILDVLILFSYMVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L + +IP ++ + F +N EL+ +A GISI+Q+L + S + T+ +
Sbjct: 60 LFLILVIPIACMLGVFLTFLRMNLDKELIALKASGISIYQMLPAPLAFSFFCTLLTLWIS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWED 178
G + + K + + E H + ED
Sbjct: 120 LFWIAWGMEQFKTTLLDIARTKVKISIQPGVFNNNFPGFVLFARQVDPLSGELHQILLED 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ L Y S +
Sbjct: 180 RSQKDRHLVILAPTGTIETNPTKGELIFNLTNGNIYTMSLNKTSFLSFDQYLVRIPLTTL 239
Query: 239 KFSEQFASRSFYEIIKK---MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ F E+ + ++ + + + + + + P +A+T+ A ++
Sbjct: 240 LKNINFNELRPKEMSWERLIKEYNITNTMQYQNKISVELHKRWAYPAACIALTIFALPLA 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ F ++ + + F+ Y +++ S G+SG + P +P IL L + +
Sbjct: 300 IMFEGIHRQ-FGLILALIMFFIYYGLMSFGFSTGESGTIPPAIGLWLPNILFFLLGLYGI 358
Query: 356 L 356
Sbjct: 359 Y 359
>gi|297624270|ref|YP_003705704.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297165450|gb|ADI15161.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 353
Score = 92.5 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/352 (13%), Positives = 122/352 (34%), Gaps = 9/352 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L + L+ ID + N ++ A L ++PL + +
Sbjct: 9 YLLRETAGLYLLGVAAF-CLLLSIDTLTVWAGYLIQQNATLGVIARLMLYQLPLFLHLSL 67
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ L + SEL + A+G+ LL P + +L+ + +L + G
Sbjct: 68 PVAAVFAVLLATGRLAKDSELKAAYALGVPPLSLLWPLLGFGVLISVAALLNNGYLEPRG 127
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +L+ + + ++ + + + + + + + +
Sbjct: 128 QIAEDELVASFFNARPSAETQRDVSFRQ--EGGLYYAARIRADTFDRTRAELSGVLVYGD 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ ++ + L++V + G P + + TL ++ D S +
Sbjct: 186 DGTLYSAPYGTWDSEVNTWTLEEVEVLREGEAPRLEPTLTLPFTLQADAGASLSA-AENL 244
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ E+ ++ ++ + + V LIA ++ L
Sbjct: 245 TLSELYARIEAGRRAGQ-SVRGDLFNLHRRLADASSAVIFVLIAGALGLHL---RGRSAG 300
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI-LLQK 358
+ I + + T+ +SF + G+L PV AA + + + + L++
Sbjct: 301 FGWTIVLLVCFFALWTLSESFFEQGVLSPVVAAWLTTGVVGLIGGALALVRL 352
>gi|330994315|ref|ZP_08318243.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758782|gb|EGG75298.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 369
Score = 92.5 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 119/356 (33%), Gaps = 6/356 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + + L+ ++ L E ++ + ++ A R+PL+ +
Sbjct: 16 YLSREMMGKVFATAVIVVSLMEILSLLEQVTEIMHR-HLGLTGVLYYAVMRLPLLFCNAM 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ ++ + ++E+ I RA G+S L+ F+ +I LGI LV + +
Sbjct: 75 PIAVLIGALLALVQMTTSNEIAIMRAAGLSTPGLIKLFLPTTIALGILCGLVNDQVTPRT 134
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E+ + + +L + ++ + K
Sbjct: 135 EQALAQWWNVTTPGAIAEAHNYWVRSGNDLISIHFLGSGASVLGDVTVYHRDRQSLLQKV 194
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + L + + P + + + F
Sbjct: 195 TTLDTARYVHGHWYGTPTRMLSVISPTRIDLLDVPPGQSIRLDWPDTLTPGYITQLTISF 254
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ ++ S + E I++PL M L+A V R+
Sbjct: 255 TQSISTMLDEEAGRLPSSQSPSFFLTEIL--GRIMLPLTFTVMLLLAVPVVYIPPRAGIR 312
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + +G + ++++ G +G L + A + +++ I I +LL+ E+
Sbjct: 313 SWLPVWCLGAGLLFVVFQGLLRALGNAGTLPSLMAIFVGILIFILGVITVLLRIEE 368
>gi|261819786|ref|YP_003257892.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
gi|261603799|gb|ACX86285.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
Length = 370
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/352 (14%), Positives = 125/352 (35%), Gaps = 10/352 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ GI + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTGIIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + +F+G K H++ +
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + ++ + V L Y+ + D T + G Q +
Sbjct: 181 GNARPSVVVADRGHITNEEGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQAVTL 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + A +F++ + + L ++ M L+ +S+ R
Sbjct: 241 NNSDVQQM-------DMRTLWNSDAHDARAEFHWRLTLILSVLIMALMVVPLSVVNPRQG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G + P+ + ++ ++I++
Sbjct: 294 RV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAIML 344
>gi|183219955|ref|YP_001837951.1| hypothetical protein LEPBI_I0537 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910079|ref|YP_001961634.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167774755|gb|ABZ93056.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167778377|gb|ABZ96675.1| Conserved hypothetical protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 378
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/362 (12%), Positives = 105/362 (29%), Gaps = 8/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY F + KT + L+ ++ + ++ + + S + +P
Sbjct: 18 FRTLDRYLFFDFFKTFIGTLIMLTSMIVIYKFTDVMKYLVSSK-VNQSHVYLHVLYSLPS 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q++ + V + ELV G+S +++ P + I++ + L
Sbjct: 77 MVDQVVAPALMFSVCFVIGQFSVNKELVAMMVAGVSFMRIITPILFFGIVIWLVMTLFGQ 136
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K ++ + + ++
Sbjct: 137 IVVIPANKNAQIQFSIMAKGSNRLIDFVYQLHIKGKKGFYYVYWIDEKENTIKGGFNYFE 196
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
IT D I L E ++ T + P +
Sbjct: 197 ITPDGYPTYTVSSQKAKFIPSPHSWVLYDAEEVRFNENLELVSRTKYAEKTYDFPEDLAY 256
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F K +F+E+ ++ I Q + +PLM + + A
Sbjct: 257 FSKPIRNPEEMNFFELADEIQSRITKGIPFRN-VIVQQHMAFSMPLMSFVVVTLGALAGA 315
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + I + Y + + K+ ++G L I ++ + + +
Sbjct: 316 ITKRSAGVA-SLGLTIAVVLLYYILNSTAKTLAENGALPIWIGMWITPVIFTTAAYYLYR 374
Query: 357 QK 358
+
Sbjct: 375 KM 376
>gi|189425645|ref|YP_001952822.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
gi|189421904|gb|ACD96302.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
Length = 379
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/343 (11%), Positives = 106/343 (30%), Gaps = 4/343 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + + L +++ + + ++ + ++ L +P +
Sbjct: 5 IINRYLMREIVGIFALGLTIFTLVLLMGRMVKLMEMVV-ANGVPLAEVLRLILLLLPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ ++ F L+ +E+ + +A G+S+ LL P ++ + + T+ +
Sbjct: 64 VLTIPMAFLLAVLLAFGRLSNDNEITVLKACGLSLGTLLPPVLLTAAAAALLTLFISVVA 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + + + S
Sbjct: 124 VPWGNTGFKQMTMDVARKYAASAIRERIFRDDLPGIVLYVDQYDEARRTMQRVMIQDSRD 183
Query: 184 IDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ I + + N ++ LK + + S + G
Sbjct: 184 PERPLTIFAKSGLVSSDEVNGVLRILLKNGSIHTQHKNDYRLVSFGEYLLTAESGRSTPP 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +++ S S + + T+ + P ++A + L RS
Sbjct: 244 VRTELDLGIGELQRGSRSPQLAPQARLKMATELHSRFAFPCATFVFAILALPLGLSNRRS 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ I + Y +++ +++ + G + P A +P
Sbjct: 304 GK-GSGFTISILILLVYYVLLSFLRTLAEKGGIPPALAVWLPN 345
>gi|219871563|ref|YP_002475938.1| permease [Haemophilus parasuis SH0165]
gi|219691767|gb|ACL32990.1| permease, inner membrane protein yjgP [Haemophilus parasuis SH0165]
Length = 366
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 110/351 (31%), Gaps = 9/351 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + + L +P +
Sbjct: 2 ILSRYLTKEIFKSQIAILFILLVIFFCQQLVRVLSSAVS-GKVPTDLVLSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA G+ L+ + SI V + +
Sbjct: 61 QLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M I + + ++++
Sbjct: 121 TPWAINKQSEMLAEAKANPRFAALAAGQFMSAGGYVLFIDNIKDNTINDIYVFQPEQQKK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + L Y+ D + + G+Q
Sbjct: 181 NKPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQDVDSD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K +S + A+ + + + + L + M L+A +S R +
Sbjct: 241 EKLVQRADFQKLLSE-------TSPEAQAELQWRLALILSVPLMALLAVPMSSVNPRQGR 293
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + +KS G SG L + + + L L+
Sbjct: 294 FAKLLPALLLYLIYF-LLQSSLKSAGASGKLNVSLLMPMVSVAFLVLGTLL 343
>gi|114766153|ref|ZP_01445157.1| Predicted permease [Pelagibaca bermudensis HTCC2601]
gi|114541613|gb|EAU44655.1| Predicted permease [Roseovarius sp. HTCC2601]
Length = 371
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/358 (11%), Positives = 125/358 (34%), Gaps = 15/358 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +F L +++ +V + +++ + S + +P +I ++P
Sbjct: 1 MLSQLMVVFGFFALVLVMVYWVNASVSLFDELITDGH-SARIFLEFSLLSLPGVIALVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V ++ SE+ + +A G+S W+L P +V +L+ + ++ + + +
Sbjct: 60 MAAFGAAVYVTNRMSNESEMTVLQAGGLSPWRLGRPVLVFGVLIALMMSVLTHALVPASV 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
D + ++ + ++ P + + ++I + + + + S + +
Sbjct: 120 AQLRDRESEISESVAARLLHEGTFLH---PARGVTFYIREITDDGELRDVYLSDRRNDQR 176
Query: 189 KIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + KL ++V + T +I +
Sbjct: 177 TVTYTAETAYVTRDDGGPKLTMRSGLAQEVQTKDLTLSTTNFTDLTYDISGLITSGGSER 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFSR 300
+ E++ + + + + +PL+ V LI A++
Sbjct: 237 RRARQIPTLELLTQTEAVAEEVNDSIGEVLEEAHNRFQMPLLCVVAALIGYAALMTGTFS 296
Query: 301 SNQPRIIVAYGIFSGFMLYTI-ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ IF ++ + I + + P+ +P ++ +L+ ++L +
Sbjct: 297 RFGVTKQIVGAIFLLVLVKLVESAITEPVRSTPAFWPL--VYLPSLVGFALAAVLLWR 352
>gi|325473492|gb|EGC76687.1| membrane protein [Treponema denticola F0402]
Length = 357
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/358 (13%), Positives = 114/358 (31%), Gaps = 10/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K ++ T + +L ++L+ + DL + + +P
Sbjct: 1 MRLLQRYLLKLFIPTFVVAMLFFVLLLQLGDLFANIVAYLQ-NGAQFKDIVKVMWLYIPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P L NL +EL + GIS+ + P +V + + +
Sbjct: 60 CIAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFED 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L ++ + + + + EN +
Sbjct: 120 NVVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADY---FNAENQTLANAYI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN----IPIKMDGF 237
I D+ + + + D+ Y++ + + F
Sbjct: 177 IVRDEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANF 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
QK E + ++ K+ + Y A ++++ P + + + S+ +
Sbjct: 237 QKNLSSVDEMRISEAKEFIAALKKNGLP-YYEALSKYHRRFSFPFTIFIVLFFSISLGGK 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F ++ + + + + + Y + K + P+A A P+ + LS+ +L
Sbjct: 296 FKKNI-LLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSVYLL 352
>gi|225619709|ref|YP_002720966.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
gi|225214528|gb|ACN83262.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
Length = 417
Score = 92.1 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/413 (13%), Positives = 123/413 (29%), Gaps = 59/413 (14%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y + L +L + FVI L ++ + + +P
Sbjct: 1 MKKI-NKYIILETIGPFLAGILFFTFI-FVIQLLPELIRLIVNNGAPLFMSLEVFVYMLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I IP L+ +I+ + L+ +E+++ RA+G ++ P ++ + IF++
Sbjct: 59 FNIAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGVFTFIFSLFFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I + LI + + + I + I +++
Sbjct: 119 NVIMSESNYRYRALISYMVNIKPSIAVGKLEFSDIPDMGLSIGSKYADDTSMSNVVIYDR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
S T + A + L V + +S +NI +
Sbjct: 179 SDTKRVITAKYGLWKNNEANAQVVTLTLYDGVVQEMPGYGFISNDYTVFDSMDINIVRNV 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH---------------------------- 266
++I++K++ +
Sbjct: 239 STLSSHERGLREMPAWKIMEKINQTKIDADKSVNEQINGMIVNAYNNIDTNAVSITSFSN 298
Query: 267 ----------------------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
Y +F+ I IP + M LI A + + RS +
Sbjct: 299 EYIQTNSAELTSLREKAMEEAVPYFYYVEFHKFISIPAACLFMVLIGAPLGIVGKRSGK- 357
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + Y +IT + + P+ A P I+ ++ ++++
Sbjct: 358 GFGFGLSVIVVVIYYLLITAAELIAGGKKVSPLIAMWFPNIVLAAMGSFLMIR 410
>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
HTCC2083]
gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 381
Score = 91.7 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 10/360 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY +F L + + ++ + +++ S A +P +I+
Sbjct: 8 FDRYVLSQLFVLFGFFSLVLVSVYWINRAVILFDRLI-ADGQPASVFLEFTALSLPNVIR 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ V L SELV+ +A G S W+L P V+ ++G F +++ +
Sbjct: 67 MVLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTFMMVLTQYLV 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + + + Q +M + ++
Sbjct: 127 PSSLEQLRFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPEGVLKDVFLSDRRNEG 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQKF 240
V + V + +I +D F
Sbjct: 187 RTTTYSSVDGFLVNEPTGPKLVMVSGVTHTLNEDTRKLTKTKFTDFSYSISSLIDNPGSF 246
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEF 298
+ E++ K + R + + P++ V LI S + F
Sbjct: 247 YKSLNQYQTLELLLATDVVQKRSGQSTGRILEEAHSRFNQPILCVVAALIGFSTLLLGGF 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
SR R I+ + + + + L P+ A + ++ +L
Sbjct: 307 SRFGVGRQIIGAILLLVMVKLVESIVTDPIRANAQLWPLVYAQS---VFGFGAVFTMLYL 363
>gi|328950000|ref|YP_004367335.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450324|gb|AEB11225.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 378
Score = 91.7 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/375 (12%), Positives = 119/375 (31%), Gaps = 31/375 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + G ++ V +I L+ + + L +VP ++
Sbjct: 4 LDRYILREAFPPFA---FGLLLYVGLILLSNLLGRAQWLVGVEFWGLVRWLWYQVPFVLN 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ + L+R +EL++ +A G+ + + V + +L ++ + +
Sbjct: 61 QTLPVAVLLATLLAYGRLSRENELLVIQAGGLPLLRTARWLFVAAFVLVGVSLYMSETLI 120
Query: 125 TSGEKIGIDLIQQWKDNG-------------------------DKQKSDIIPWMQISNPQ 159
+ L + + K + +++ +
Sbjct: 121 PRANERAAVLWWDELTSKGNGLARLAGQDVPVGPYRLFFARYDYRTKEMVGVRLELWQGE 180
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
I A + E + + D ++ V R
Sbjct: 181 TLAVIFADRGRLEENRLRLVNFRQYTLDLTRLPLPDFASLEEAEQHLRRL-VRMQNVARD 239
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P + L Q F + + ++ + A QF+ ++
Sbjct: 240 PSRTLTVLLPKTRSQLLAQHGGGGFEDANPISYWYERIQKTVNSPREHLEARVQFHSMLA 299
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P + + ++A +++ ++ + Y + Y + T+ K +G++ P
Sbjct: 300 VPFANLVVLVLALPIAVR--KAGSTGLAFGYSLIVTIGYYLVFTLGKLLALNGVVPPELG 357
Query: 340 ALIPVILTISLSILI 354
A +L + L+ +
Sbjct: 358 AWGANLLALGLAWVF 372
>gi|260434859|ref|ZP_05788829.1| unclassified ABC-type transport system permease [Synechococcus sp.
WH 8109]
gi|260412733|gb|EEX06029.1| unclassified ABC-type transport system permease [Synechococcus sp.
WH 8109]
Length = 387
Score = 91.7 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/328 (13%), Positives = 104/328 (31%), Gaps = 16/328 (4%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ QM + N I+ A + +P + +P TL+ ++ VF L+ +EL R
Sbjct: 46 MFELVRQMVDK-NLPITIAAQVLFLSIPRWLAFSVPIGTLMASLFVFTRLSANNELTALR 104
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
++GI+ ++++ + S+ + +F+ + + + E+ +++ K+
Sbjct: 105 SLGITTKRMISAAIALSMAMTLFSFFLNDVVVPRSERYAEVNLKRGLGQAIANKTGEDII 164
Query: 153 MQISNPQQDIF-----------IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ I + K + +++ A
Sbjct: 165 YPRFGRRTGIDGKSADRGLLQLFYSWKFQDGEMKDVTVLDFSRSGITQLLRADRAIWNDD 224
Query: 202 YNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
L + D + E + + E ++
Sbjct: 225 QTGWDFLDGHILTLTANGSSTKADFKRYLYPLDSAPQRLAGIEEDAVNMTVAEALQAQRL 284
Query: 259 SNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+S R + +P+ + L A++ + + + +
Sbjct: 285 YEESGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPTYRTSRSFSFVLTLGIIAI 344
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVI 345
Y I S G G L P+ AA +PV+
Sbjct: 345 YYVIGFSFSSLGVKGTLSPILAAWLPVV 372
>gi|301168145|emb|CBW27733.1| putative permease [Bacteriovorax marinus SJ]
Length = 382
Score = 91.7 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/381 (13%), Positives = 110/381 (28%), Gaps = 24/381 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY ++ L + + L I + S L
Sbjct: 1 MLKLTQRYLAVNFIAPFTMSLFFFVAFLLTFQLFRIIKIVISK-GVEWSLVFELMGHIAI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P L I L+ SE+V R+ G++ +L PF++ ++ +G +
Sbjct: 60 SFIPMAVPLSCLFATIYTLNKLSDDSEIVAMRSFGMTKSKLFLPFLISALFIGACIYSLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI--------FIGAKKILPE 172
N + + + + I + G + + +
Sbjct: 120 NKVIPASKTQFKNTIIRLTSRGVLTDIKEGQFFTEVAGVTLFADTVIDKGRKMYNVFIQQ 179
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ K+ +I K+ + +I + ++ D
Sbjct: 180 EGKGNLLEQVVTAKEGALIKIKNEEWSIPSVRLHLTDGTIVKRFKDTNKDLEKILFKEYD 239
Query: 233 KM----DGFQKFSEQFASRSFYEIIKKMSF----------SNKSNIFHNYRAETQFYFLI 278
F + R+ E+ ++ S K + + + + I
Sbjct: 240 FPLASGGAVNNFVTKDGMRTNAELRSEIKKATALAVKKKLSRKDRERSMAKTKLELWSRI 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL+ LI S+ ++ R +F Y++ + SF + GI+
Sbjct: 300 NTPLLCFVFILIGFSLGIKHGRGKSKNSS-GRALFVLLGYYSLFFLGVSFARKGIVPAYV 358
Query: 339 AALIPVILTISLSILILLQKE 359
P I+ S+ + +
Sbjct: 359 VVFAPTIILASIGAYFYKKLD 379
>gi|294012648|ref|YP_003546108.1| putative permease [Sphingobium japonicum UT26S]
gi|292675978|dbj|BAI97496.1| putative permease [Sphingobium japonicum UT26S]
Length = 407
Score = 91.7 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 116/356 (32%), Gaps = 10/356 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L+ + +L+ + + + + + +S + A +P +
Sbjct: 6 DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMMPEYLSL 64
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++ +
Sbjct: 65 GIPIGLMLGILLAFRKLALSSELDVMRAVGLSYGRLLRVPYMFAIALALLNFGIVGFVQP 124
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE-------D 178
L + + + + + +
Sbjct: 125 LSRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAVGKDG 184
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + + + D D I L + +S L I +
Sbjct: 185 QTVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIERF 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ E++ + + F+F +V M++ + L A + ++
Sbjct: 245 RGRDVDREKTIPELVT-IGHDPATPEKLRNEIRANFHFRMVEVAMMLLLPLAALAFAIPP 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + V I + + + G G + P+ A P +L L + +
Sbjct: 304 KRSTS-ALGVFLSIVFIVTYHKVNEYGQGVGSLGRIDPIIALWGPFLLFAGLILWM 358
>gi|85060086|ref|YP_455788.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
gi|84780606|dbj|BAE75383.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
Length = 366
Score = 91.7 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/356 (13%), Positives = 125/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + + L VP +
Sbjct: 2 IITRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + SE+ + A G+ L+ ++ S++ I V+ + +
Sbjct: 61 QLILPLSLFMGLLMTLSRMYTESEITVMHACGLGKSILIRAALLLSLITAILAVVNVVWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + K N + N +F+G K H++
Sbjct: 121 SPWSSRHQDLVMSEAKANPSMAALVEGQFKPAENGNSVLFVGNVKDKGFEHVFLAQLKPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ ++ + L K Y+ R + T I
Sbjct: 181 GNARPSVVIADRGHMSQRPDGSQLVMLDKGTRYEGTALLRDFRITDFTQYQAVIGRRAVA 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S ++ + A + ++ + + ++ M ++ +S+
Sbjct: 241 VDGTDAEQMSLRQLWRS----------PEPEARAELHWRFTLVVSVLIMAMMVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T ++S G G L P+ + + ++L++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPMLWMWLTNVAYLALALVL 345
>gi|307294585|ref|ZP_07574427.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
gi|306879059|gb|EFN10277.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
Length = 406
Score = 91.3 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 116/356 (32%), Gaps = 10/356 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L+ + +L+ + + + + + +S + A +P +
Sbjct: 6 DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMMPEYLSL 64
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++ +
Sbjct: 65 GIPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALLNFGIVGFVQP 124
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + + +
Sbjct: 125 LSRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAMGKDG 184
Query: 186 K-------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + + D D I L + +S L I +
Sbjct: 185 QTVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIEKF 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ E++ + + F+F +V M++ + L A + ++
Sbjct: 245 RGRDVDREKTIPELVM-IGHDPGTPDKLRNEIRANFHFRMVEVAMMLLLPLAALAFAIPP 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + V I + + + G G + P+ A P +L L + +
Sbjct: 304 KRSTS-ALGVFLSIVFIVTYHKVNEYGQGVGSLGKIDPIIALWGPFLLFAGLILWM 358
>gi|270157967|ref|ZP_06186624.1| putative permease [Legionella longbeachae D-4968]
gi|289163766|ref|YP_003453904.1| Predicted membrane protein [Legionella longbeachae NSW150]
gi|269989992|gb|EEZ96246.1| putative permease [Legionella longbeachae D-4968]
gi|288856939|emb|CBJ10753.1| Predicted membrane protein [Legionella longbeachae NSW150]
Length = 359
Score = 91.3 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 2/354 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T + +++ L + N+ + L +P ++
Sbjct: 2 IIFRYLAKEVLITLISLTSILVLIFLSNQLIQYLNRAAS-GSIPGVIIMKLMMLELPTLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP + ++ + L SE+ + RA G +LL ++ + ++G +V+
Sbjct: 61 CLLIPLGFYIAMLLAYGRLYAESEMTVLRACGYGPNKLLKHSLIMATVVGFIVAIVMIWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L++ Q + I+ ++ ++ + T
Sbjct: 121 SPLIYIERAKLLRSTGIQTLVQTIMPGRFHAINEGKEVFYVQSMSRDHTKAEQVFLAKRT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
AD A D + + Q G+ + ++
Sbjct: 181 TVDDKTRWDVLWADQAFAETDPKTGEDYIILQNGKEYQGVPGHADYQIAEFGEYKARLPH 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + + + + +P+M+ A+TLIA +S RS +
Sbjct: 241 PVVKISEDFRTISTANLFPFNNTDRAKAAELQWRFSVPIMVFALTLIAVPLSRINPRSGK 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + ++ I + SG + + I+ + ++ +
Sbjct: 301 FAK-LLPAIIIYIVYANLLFIARDAMVSGKMPQWLGLWWVHLCIIAFGLWLIWR 353
>gi|50119363|ref|YP_048530.1| putative permease [Pectobacterium atrosepticum SCRI1043]
gi|49609889|emb|CAG73324.1| putative permease [Pectobacterium atrosepticum SCRI1043]
Length = 371
Score = 91.3 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 124/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL ++ ++ + + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALILAMFTAVIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + +F+G K H++ +
Sbjct: 121 SPWSSMHQEEVLAEAKANPSMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + +Y + ++ + +
Sbjct: 181 GNARPSVVVADRGHITQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQTVT 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + + A +F++ + + + ++ M L+ +S+ R +
Sbjct: 241 LNNSDVQQMGMQA-----LWSSDAHDARAEFHWRLTLIVSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G + P+ + ++ +++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWIWLTNLMYFGIAVML 345
>gi|295690097|ref|YP_003593790.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295432000|gb|ADG11172.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 400
Score = 91.3 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 109/360 (30%), Gaps = 7/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + L ++ +++ + A LAA VP
Sbjct: 6 MRLIDRYLLRLLFWPLVGCLGV-TVVALLLERILRLLDALSQSSARFGYVAQLAANLVPH 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V +V L+ SE+ A G S+ ++ PF+ + L +F+++V
Sbjct: 65 YLGLALPVAFFVALFIVIAKLSDGSEVDALLASGQSLERIAAPFLAVGLFLSVFSLIVFG 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----NPQQDIFIGAKKILPENHIWE 177
+ ++ + G + ++ G +
Sbjct: 125 YMQPYSRYAYRAVMHAAINAGWNGRLAGGAFIDDKGSLLTADSADIAGQSLTRVFIRRLD 184
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDG 236
I + D + D ++ V + + NS T P+
Sbjct: 185 AKGREEIITAGSANLKMDPGGKTVTMDLRDGRRIVRDDNGQYRNLAFNSLTTQTPLAAAA 244
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
R + + ++ Y + L + L+A + L
Sbjct: 245 VLLRDRGGDERELTLGELATQAKSPHPVVSKSTLLSELYGRLARAAFLPFLPLLAFPLGL 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R N+ ++ G+ + + +S K+ + A IP L S ++ + L
Sbjct: 305 ASKRGNRAAGLIMAGVLL-LAFQHALLLGQSLAKADKVAAAPAIWIPFALFSSFAVWLFL 363
>gi|319896844|ref|YP_004135039.1| inner membrane protein [Haemophilus influenzae F3031]
gi|317432348|emb|CBY80703.1| conserved inner membrane protein [Haemophilus influenzae F3031]
Length = 364
Score = 90.9 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 126/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALLMSLLTASIATYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ K N ++ SN +FI K ++++ +
Sbjct: 121 SPWAIQKQANIVEDAKANPTMGVLSSGQFISTSNNNVVLFIDQIKDNQIHNVYLFQITPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K ++ + +L + N LK + + D T + G Q+
Sbjct: 181 KQIKPSVVTAEKGELIALPNGDQVLNLKNTQRVEGTSVLPDFRITHFDEYQAYLGHQETE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +++ + + + + + ++ I + L + M LIA +S R
Sbjct: 241 NNADEAAELTLVQLIQQDSPAA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I + L I++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGGAGKLDTAIFMQLVNIGFLLLGIVL 345
>gi|317153284|ref|YP_004121332.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943535|gb|ADU62586.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 380
Score = 90.9 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/354 (12%), Positives = 119/354 (33%), Gaps = 6/354 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L RY + L L + + D+ + + + ++PLI
Sbjct: 8 GVLGRYLIQQNLYLMSICLTVGTCIYLLSDVFDRLDDFIK-AGLGAETILFYFFVKIPLI 66
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q++P I L+ ++ L R+ E++ RA G+S + F++ ++ + +
Sbjct: 67 VSQLMPAIFLLALVLQLGILTRSKEMLALRAGGVSFAWFIKFFLIYAMFWSLGQLAFSQF 126
Query: 123 IATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ GE + ++ + + + W + + + +
Sbjct: 127 LGVFGEYEANRIWKEDVRKKQLDELTITDLWFRDGPFIVLAREAYPGKSRASDVVVYEFA 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +I+ K A + + + ++ + + ++ +K +
Sbjct: 187 TDNQELIRILTAKKAMIDDNGWGLLDVHELDTRTFVSVTRLSQFLSVRQNLKAYAAVELK 246
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A E+ + + +S + T ++ + M + S
Sbjct: 247 GDTAQLPLLELSRAIEKLEESGS-NVEILRTIWHTKWSYAFSIAVMA---LLALALVTFS 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + F+ Y + + + G+ +L P AA + + +L+ + L
Sbjct: 303 ENIYANIGFSLILIFVQYGVHAVGATAGEQAVLPPFVAAWLGNFVMAALAGMRL 356
>gi|218296305|ref|ZP_03497061.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218243377|gb|EED09907.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 347
Score = 90.9 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/343 (12%), Positives = 110/343 (32%), Gaps = 12/343 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L L L ++L + E+ + + R P
Sbjct: 1 MKTLDRYLLREALSLFLGGLAAIVLLFLAGAVYEVLAPLVAK-GADPYTLLLYLLYRAPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P L +++ + SEL A+G++ ++L PF++ ++L+ + L+
Sbjct: 60 ALVRGAPVAYLFTLLLLLSRMAEDSELKALLALGVARERVLLPFLLLALLIALAVFLLGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G DL+++ + Q + + +
Sbjct: 120 SLVPKALAAGQDLLRRQVLERPRALLTPGTTFQDARGRVVY------VGEVAGDRIGKLR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ + R ++ ++ + + + + L + + +Q +
Sbjct: 174 VLSQEEVLLAERGRFQEGVLLVEEGQRVTYEGDRPRTLTRFQKGEILLKDLTFEPWQNPA 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + ++++ ++ P V L A ++
Sbjct: 234 NRMTLGELKKEVERLRALGVKAGLEAT----TYHRRYAEPASAVVFALFAVGLAFYLLGG 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ V I + F Y ++ + G+ L P+ AA P
Sbjct: 290 SRSLGWVGVAILTFF-YYATWSVGRIMGEQNALDPLLAAWGPN 331
>gi|167626385|ref|YP_001676885.1| hypothetical protein Fphi_0163 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668816|ref|ZP_04756394.1| hypothetical protein FphipA2_08610 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877348|ref|ZP_05250058.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
gi|167596386|gb|ABZ86384.1| conserved membrane protein of unknown function [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254843369|gb|EET21783.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
Length = 352
Score = 90.9 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 122/356 (34%), Gaps = 10/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY FK + L L IL F+ + S ++ ++P I+
Sbjct: 6 IDRYIFKTVFSSFLIVSLIFCILFFIFTYLAQVSN--NDTGASNIELIIITIYQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ V+ I+ I T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSIVTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+K+ + + K+ + + + I +D +
Sbjct: 124 PVLQKLADSNTVAYNTHDLWLKTPDGFMNISNIDPNEGKAYGIRKF----ITKDNQVQEV 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K + DA + V + N
Sbjct: 180 RYAEKAEYVNDATANVFNVSVVTFPNKDVKHIDVKENVYKAIWSNPIPISVAKVITINDN 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+F ++ + M SN +F+ I PL L+ + L++ +S+ +RS+
Sbjct: 240 DYLNFTQLTRYM----LSNSQAKDSISLKFWQEIFQPLALMVLILLSVPLSIGSTRSSTL 295
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + G F GF + I I L + A P ++ + L I + ++ ++
Sbjct: 296 ILKLLLGAFFGFAFFIINQIFGPIALILHLPTILGAAGPTVIALILLIYLFIKSKE 351
>gi|301168568|emb|CBW28158.1| putative transport-related membrane protein [Bacteriovorax marinus
SJ]
Length = 368
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/366 (13%), Positives = 120/366 (32%), Gaps = 14/366 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL + K + K ++ +LV V +L + N + + + +P
Sbjct: 1 MGILRKLILKEWFKFFAGSVIALFLLVSVANLISGFLR----GNVTATEVMINHFIEIPG 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +I P L+ ++ L SEL A G S + + S+++ I ++ +
Sbjct: 57 YLNKIFPVSCLMASLFSINKLKTRSELTAIFAAGYSRKNYIIDLIFASLIVTIVQFMMTS 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD----------IIPWMQISNPQQDIFIGAKKILP 171
I+ + +LI + KS + + K
Sbjct: 117 YISPFFKSQRENLISESTHKFSNLKSQGLRSSTIGSGKMWYRSDDYFIAFTNYNQIKKEL 176
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
N ++ + ++ + + + + I V + + + +N+
Sbjct: 177 YNVTLYKLSADSYLEEIQAMQKVYWEKGIWIGKNVIKLDGLNLKSFPKAEENKENIINLY 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++ + ++ K + S I N + + ++ L +
Sbjct: 237 ETPEELRQIEADITILNIVKLWKYIDQLKTSGININEYMVLFYDKFANSIICIIFAILAS 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
SV RS+ +A F + + + + + G + + P+AA I +
Sbjct: 297 VSVFNPNRRSSSFGKNIAAVFFFTILYWLVYSYLIELGNNSKVPPIAATFTVPIAFTIIL 356
Query: 352 ILILLQ 357
I+I +
Sbjct: 357 IVIFSR 362
>gi|108760212|ref|YP_631129.1| hypothetical protein MXAN_2918 [Myxococcus xanthus DK 1622]
gi|108464092|gb|ABF89277.1| putative membrane protein [Myxococcus xanthus DK 1622]
Length = 371
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 122/365 (33%), Gaps = 13/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSI-SRGAVLAATRV 59
M G L+ Y + YL+ + L LV V + + ++ A L +
Sbjct: 1 MRGTLFIYVLRTYLR---FALGILAGLVLVFVVVDFVDRAKLYTGPGWVWDAAELYFYKA 57
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ +QQ+ P L+ L + E+ RA+ L P +V S + + V
Sbjct: 58 MMSVQQLGPAALLLAAGTTVSALRKQGEVTAIRALTFGPSALYLPILVASFVACVGLVAF 117
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+AT + ++ Q + + P F+ ++D
Sbjct: 118 DERVATYSGRRVDEITTQRFNKWGDWRFYYTPKQWFRRGDNIFFLRGGSAQEG---FQDV 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVK-LKKVVEYQYG----RIPIDKNSTTLNIPIKM 234
+ T+ + + R DA L VVE + ++ + +
Sbjct: 175 SVFTVTESFDLQRRLDASGMFPVEGMRWRLTDVVERTFDGEGKTSVRQLPEAEYDLGVAV 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ + E+ +++ + E + P+ L+ +
Sbjct: 235 TAFRIRPGRPEQMRASELREQIVARRDVG-LATKQFELALHNRFAYPMAAFPAALLGVGL 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L +R + G+ + ++ ++ + ++ + L P AA P +L ++ +
Sbjct: 294 ALRANRRGHLTAAIIEGLLTAVAMWGLMMVCRTLVLTERLSPGVAAWTPTVLLGLIAGAV 353
Query: 355 LLQKE 359
LQ+E
Sbjct: 354 WLQRE 358
>gi|187250532|ref|YP_001875014.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
gi|186970692|gb|ACC97677.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
Length = 364
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 118/355 (33%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K L L L + + F++ ++ N + L VP +
Sbjct: 5 IISKYMIKNLLTFFLGALFVLVFIFFMMHFIKLFNLAMTFGADMLWVFKTLVKL-VPDVF 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + ++ N++ E++ RA G S ++ P + ++ L + N I
Sbjct: 64 SLCAPMAFQLAVLLTLGNMSENGEIIALRAAGFSFKEITKPLFIFALFLFLVIFSFTNWI 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +D + K + +M+I + + K + + + +
Sbjct: 124 TPKNTKSFLDARNNVRGRIGKVILEPKTFMEIGDWSLYMESLDPKTNLMSQVRLLNKNDS 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQK 239
+ KI +KL + K N + ++ + ++
Sbjct: 184 ANYTTKINALSGIVNVTSDYVGLKLFDGQMQRVSSEDPSKIMAANFKSYHVTFPLVRAKE 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + ++I ++ +S + +T V+ L + + L++ + F
Sbjct: 244 RRLREEEFTTPQLIARI-YSGELTDKERAEHKTNVAMRQVLALSPLVLVLLSCPLVFSFG 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + I Y ++ S GK + A +P+ + +S +
Sbjct: 303 KRANKAWGMLWSIVIVLSFYMLLMAGVSLGKKYEIAAYFAPFLPIAAGLIVSRYL 357
>gi|226355960|ref|YP_002785700.1| permease YjgP/YjgQ [Deinococcus deserti VCD115]
gi|226317950|gb|ACO45946.1| putative permease YjgP/YjgQ; putative membrane protein [Deinococcus
deserti VCD115]
Length = 381
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/382 (10%), Positives = 105/382 (27%), Gaps = 34/382 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L ++ L + + A +VP +
Sbjct: 4 LTRYVTAELIPPLLAGTLLFTAVLSFGYFF---ISSQWLAGVPLGLVSRWIAYQVPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ P +++ +V F ++ ELV ++ GI + ++ P + + L+ + + IA
Sbjct: 61 KVFPMAIVLMTVVAFGRMSTERELVAVQSGGIGLGRVARPVALVAGLVTALALWLSLWIA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +
Sbjct: 121 PKANVETRGLYWDALTGAGLSQLVGKTVDLGGGLTLALASYDSATRELRGVRVEKWNADA 180
Query: 185 DKKNKIIHRKDADLAIIY-------------------------NDKVKLKKVVEYQYGRI 219
++ +I + + V +
Sbjct: 181 PRRATLIFADKGTFENNQLALSGYQVYTVDYEAASELNRVPENDPLAFREAVQNVFPSVV 240
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE--IIKKMSFSNKSNIFHNYRA--ETQFY 275
+K + TL + + Q ++ + + ++ + + R
Sbjct: 241 IPEKTTDTLKVDTGLSRKQTLAQYADAIGADSEGWPELITALTAPGVKASERQAARVNLN 300
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P + + L A +L F R + + + Y + + + + +
Sbjct: 301 RKLALPFANLVLALSALPFALRFGR--TLGVSLGIALLIAVAYYLLFFVGLTVASAMPAV 358
Query: 336 PVAAALIPVILTISLSILILLQ 357
P + I+ + +L +
Sbjct: 359 PEVGVWLANIVFAVAGLWMLRR 380
>gi|16273591|ref|NP_439846.1| hypothetical protein HI1704 [Haemophilus influenzae Rd KW20]
gi|1176472|sp|P45333|LPTF_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|1574558|gb|AAC23350.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
Length = 372
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + N LK + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLDSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|325983220|ref|YP_004295622.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
gi|325532739|gb|ADZ27460.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
Length = 358
Score = 90.5 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/341 (12%), Positives = 103/341 (30%), Gaps = 7/341 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + +L + L + I+ L + +
Sbjct: 1 MKLIERYIAREIMLPFTVVILILIGLFASFSSARLLAGAVTET-LGIAGLIKLVFLKTLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP + I+ LN+ EL + R++GIS +++ + +I +GI + ++ +
Sbjct: 60 ALEVLIPIALYISVIMGLGRLNKDQELNVIRSVGISGHRIVIAVLSVAIPVGIISGMLSS 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L Q + + + + + I + + ++
Sbjct: 120 YVRPWAYGESYILDAQAEAELNTNRFQAGRFYGSEKSGRVI--YVRNKNEADKQMQNIFH 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I I + + T++ + F+K
Sbjct: 178 YIKKPDSSEIVIAKQAQQIKP----TAEDDRPHIQLSEGTIYQLTSIASTDDVIQFKKMI 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +K + + R + + I PL V + LIA + R
Sbjct: 234 YFIDNDFVTNYRRKAAATRTLWESDVPRDIAELQWRISRPLATVLLALIALTFIHTAPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++ Y + + K++ + + V
Sbjct: 294 DKTEKTYLIAALVFAAYYNLSGLAKTWVEQETIGSVPGVWW 334
>gi|162148704|ref|YP_001603165.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|161787281|emb|CAP56875.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
Length = 402
Score = 90.5 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY L L L M + + L + N + ++ A L A VP
Sbjct: 16 PGTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGG-TLKIFAGLLADLVPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V +++ +E+ A G+S+ ++ PFVV +LG+ +
Sbjct: 75 YLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW-------MQISNPQQDIFIGAKKILPENH 174
I + G + M ++ Q +++ +
Sbjct: 135 FIQPYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDK 194
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
IT D ++ + + V + + + D + K
Sbjct: 195 SAGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDDRPTLTTFDTTTRFFQTSSKA 254
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ + E+ + + + + AE +F + + + + ++A ++
Sbjct: 255 HAFRNRGNDERELTVLELRHGIRHRDLAIRRTHLVAEL--HFRLARAMAIPFIPILACAL 312
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + I + + S S + P P + + +
Sbjct: 313 AGMAKRQRHNTGLAIAAISL-VGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWL 371
Query: 355 LLQK 358
+L++
Sbjct: 372 ILRR 375
>gi|162146456|ref|YP_001600915.1| hypothetical protein GDI_0632 [Gluconacetobacter diazotrophicus PAl
5]
gi|209543541|ref|YP_002275770.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785031|emb|CAP54575.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209531218|gb|ACI51155.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 363
Score = 90.5 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 116/355 (32%), Gaps = 11/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y + K L M L + ++ S + L ++ + +
Sbjct: 2 IIRNYLLREIGKPLAAMLGVCMALFASYSAADFLSEAVN-GLLSTNTILALVTLKLLIGL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ L SE+ A+ ++ +L + + + I L+ +
Sbjct: 61 EVLVPVSLYLSIVLALGALYGNSEITALHALRVTPGMILRHVMTLAAGVAIVVGLLSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+L + + + D + + N + IF+ ++
Sbjct: 121 RPWAYHQLHNLSKSAQLSLDVDAMQAGTFYVVQNGARVIFLTEREGPGTPARDIFVQVRR 180
Query: 184 IDKKNKIIH---RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I D + V+LK Y GR P + I D +
Sbjct: 181 AKTTQIIHAELGYPMTDEGKQSDVYVRLKNAHVYDIGRQPGVSDKVLTVREITQDPNRHS 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+E S +++ S H +F + + P+ + + ++A ++ R
Sbjct: 241 TEPLGYSSIAAPSLQLAAS------HAPADVAEFQWRLSTPITTMLLAMLAVPLARGRPR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
N+ + I F+ Y + T +++ + G++ + L L+ +L
Sbjct: 295 QNRYGK-LGAAILIFFVYYLLYTSARTWVQHGMVAAMPGIWWAPALLAVLTGFML 348
>gi|293406596|ref|ZP_06650522.1| predicted protein [Escherichia coli FVEC1412]
gi|298382335|ref|ZP_06991932.1| predicted protein [Escherichia coli FVEC1302]
gi|291426602|gb|EFE99634.1| predicted protein [Escherichia coli FVEC1412]
gi|298277475|gb|EFI18991.1| predicted protein [Escherichia coli FVEC1302]
Length = 342
Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 99/316 (31%), Gaps = 2/316 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 28 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 87 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 147 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 206
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 207 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 266
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + P++ +AM L+A + RS
Sbjct: 267 MPGNTFSVRQLNHYIHYLQETGQPS-SEYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 325
Query: 302 NQPRIIVAYGIFSGFM 317
+A G+ G +
Sbjct: 326 PGMGSRLAVGVIVGLL 341
>gi|86138693|ref|ZP_01057266.1| membrane protein, putative [Roseobacter sp. MED193]
gi|85824753|gb|EAQ44955.1| membrane protein, putative [Roseobacter sp. MED193]
Length = 387
Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 112/356 (31%), Gaps = 7/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY YL +F L + + +V + +++ + A +P +I+
Sbjct: 4 FDRYVLSQYLLFFSFFALILVAVFWVNRAVVLFDRLIG-DGQTAIVFLEFTALALPNLIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V L SEL + RA G S WQ+ P + ++ + ++ + +
Sbjct: 63 MVLPVAVFASAVWVTNRLQSESELTVLRATGTSPWQMARPALAFGVITALMMSVLTHFLL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ----ISNPQQDIFIGAKKILPENHIWEDFT 180
S Q+ N + ++ ++ + I D
Sbjct: 123 PSSISQLALREQEVSRNVTAKLLTEGHFLHPVKGVTFYIRQIDSNGTLNDVFLSDRRDPN 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D + + +++ + + + +I +
Sbjct: 183 QTMTYTGARAFLVRDGENTHLIMVNGMAQRLEHRTQQLSTTNFSDFSYDISSLANQSTAA 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
S +E+++ + + + +F+ L+ VA+ LI S + L
Sbjct: 243 IRNIREISSWELLQDRENISLTEGYSRGALAEEFHLRFARALICVAVALIGFSTLMLGSY 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ + ++ +S +P + +++++ L
Sbjct: 303 SRLGVWRQALVAFLLLILVEGLRGVVSEPVRSNP-DLWLLIYLPAFIGLAIAVGFL 357
>gi|258542689|ref|YP_003188122.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633767|dbj|BAH99742.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636826|dbj|BAI02795.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639879|dbj|BAI05841.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642935|dbj|BAI08890.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645990|dbj|BAI11938.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256649043|dbj|BAI14984.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256652030|dbj|BAI17964.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655087|dbj|BAI21014.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 399
Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 122/364 (33%), Gaps = 12/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY + L L MI + + L + N + N I L A +P
Sbjct: 20 PGTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFN-LLAAGNNHIGIFIGLLAALLPH 78
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP V V +++ E+ + G+S+ ++ P++ ++LG+ + L+
Sbjct: 79 YLGLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGVLSFLLYG 138
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDFT 180
I G + + S+ + ++ +++
Sbjct: 139 FIQPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDL 198
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
S ++ + + ++ L V + D ++ L +
Sbjct: 199 SEQQERDITARNGHIRIGSDGETVEIDLTNGVIVTDKGDGVPSLVTFDHSTRYLTHASHI 258
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ E + E++ ++ + S + R+E +F + L + M L+AAS+
Sbjct: 259 SPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEV--HFRMARSLTVPFMPLLAASL 316
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L R + II S + + P ++ I L+
Sbjct: 317 ALMRKRQRNNA-GLPLAFIIMVGFDHIIQFGHSMVATKKASLLL-IWGPAVVFIVGCTLL 374
Query: 355 LLQK 358
LL K
Sbjct: 375 LLYK 378
>gi|304396396|ref|ZP_07378277.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
gi|304355905|gb|EFM20271.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
Length = 366
Score = 90.1 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/351 (11%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMILMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + + +F+ K +++
Sbjct: 121 GPWSSRYQDEVTQNAKANPGAAAMAAGQFQTSGDGSAVLFVENVKGNNFGNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + ++ + ++ +
Sbjct: 181 GNARPSVVLADSGHLEQRKDGSQVVTLDKGTRFEGTALLRDFRITDFTNYQAIVG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + + + + + ++ + + ++ M L+ +S+ R +
Sbjct: 236 YKAATLDPNDSEQASLSDLVANKTPDFQAELHWRLTLVFAVLVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + +KS G G L P + I + L++L+
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLKSSGAKGRLDPALWMWVVNISYLVLAVLL 345
>gi|107103348|ref|ZP_01367266.1| hypothetical protein PaerPA_01004417 [Pseudomonas aeruginosa PACS2]
Length = 362
Score = 90.1 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/347 (11%), Positives = 108/347 (31%), Gaps = 6/347 (1%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
L T ++++ + Q + ++ A R+P +Q I+P
Sbjct: 1 MLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFLQLILPLGLF 59
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++ + L SE+ + A G+S +LL + ++L+ I + +A G
Sbjct: 60 LGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQGINQFA 119
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
L+ + + + + +++ + D +
Sbjct: 120 LLLNKQDTLTEFDTLVPGRF--QAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSSNQE 177
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
R + L + Y + + + +
Sbjct: 178 RGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEASSE 237
Query: 253 IKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ + +++F N R + + + + PL++ +TL+A +S R + + +
Sbjct: 238 VSERDAVPTADLFGSDNPRYQAELQWRLSTPLLVFVVTLLAVPLSRVNPRQGR-FLKLLP 296
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I ++ ++ G + L +++ +L+
Sbjct: 297 AILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLFYW 343
>gi|87306338|ref|ZP_01088485.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
3645]
gi|87290517|gb|EAQ82404.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
3645]
Length = 379
Score = 90.1 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/372 (12%), Positives = 109/372 (29%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS----ISRGAVLAATRV 59
I+ RY ++K+ L F + L VID ++ + R+
Sbjct: 3 IIDRYLLTQFIKSFLIFFISFTGLYVVIDSFNNLDEFLRYGEQTGRGAFPILFDYYTPRI 62
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+TL+ + L R +E+ A GI+ +++ P ++ L+ I L
Sbjct: 63 FTFFNMTGGILTLIAAMFTVTWLQRHNEMTALMAAGITKERIVRPVIIAVGLIAILGALN 122
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ Q W KQ + + + +
Sbjct: 123 REFVVPEYSDALSRNAQDWLGESAKQLQPKYDNLTDVLISGNHTFANELRIEAPKFRLPR 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--- 236
+ + K ++ L +V E + ++ + M
Sbjct: 183 SQPGVGTKINAVNAFFKPAEADRPSGYLLDEVTEPENLAEIPSLTDRDGSVFVLMPQDNA 242
Query: 237 --------------FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
F++ + RS +S ++ + + + P
Sbjct: 243 WLAPNQCFVVSELTFEQLTASREWRSSASTWALISALRNRSLDFGADVRVEIHSRLTQPF 302
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + L+ + L+ + V + + + + G + ++ P AA
Sbjct: 303 LDMTLLLLGLPLVLKNDNR-NVFVAVGLCGAVVVLFFGVTMASRGLGANYMVSPAFAAWF 361
Query: 343 PVILTISLSILI 354
P++L + + +
Sbjct: 362 PLMLFVPFATYM 373
>gi|209545529|ref|YP_002277758.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533206|gb|ACI53143.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 402
Score = 90.1 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY L L L M + + L + N + ++ A L A VP
Sbjct: 16 PGTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGG-TLKIFAGLLADLVPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V +++ +E+ A G+S+ ++ PFVV +LG+ +
Sbjct: 75 YLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW-------MQISNPQQDIFIGAKKILPENH 174
I + G + M ++ Q +++ +
Sbjct: 135 FIQPYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDK 194
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
IT D ++ + + V + + + D + K
Sbjct: 195 SAGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDGRPTLTTFDTTTRFFQTSSKA 254
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ + E+ + + + + AE +F + + + + ++A ++
Sbjct: 255 HAFRNRGNDERELTVLELRHGIRHRDLAIRRTHLVAEL--HFRLARAMAIPFIPILACAL 312
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + I + + S S + P P + + +
Sbjct: 313 AGMAKRQRHNTGLAIAAISL-VGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWL 371
Query: 355 LLQK 358
+L++
Sbjct: 372 ILRR 375
>gi|114797170|ref|YP_760296.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114737344|gb|ABI75469.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 391
Score = 90.1 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/366 (14%), Positives = 118/366 (32%), Gaps = 7/366 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + +L L + + +++ ++ + + ++L A +P
Sbjct: 1 MFARLDRYLIRSFLGMFAG-LTVLAMALLLLERLIRITEIVSGSGSAFASASLLVANLIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ I+ L+R+ E+V A G+S+++++ PFV S++L ++L+
Sbjct: 60 HYLNLALPGAFLISMILTIDRLSRSGEIVALMAAGVSLYRIVLPFVQFSLVLAAASLLIS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ + ++Q N +
Sbjct: 120 GFLQPLSRYSYREIVYNLQHQSVLSVFQEQKFVQYDNRIIWTDSVLPGGRLGQTFILESE 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDG 236
K ++ + L + L+ P+ +
Sbjct: 180 PDGARTLLTGGSGKLREIRAGEWEITLLGGAGASYRDADPPEEYDRIEYGELSWPVIAET 239
Query: 237 FQKFSEQFASRSFYEIIKKMSF-SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + R + + A F+ +L+AM LIA +
Sbjct: 240 GQYRARGGDERELFLPELLAKAGAAMPGDIAPAVAAATFHDRTSRAALLLAMPLIAIILG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L R + V GI + ++ G++ P V++ + SI +
Sbjct: 300 LNLGRVARSS-GVVLGILFLLGVQKVLEYTLVQTSEGVIPPWMGFWPIVVVVAAASIFLF 358
Query: 356 LQKEDG 361
+ +G
Sbjct: 359 RRLAEG 364
>gi|68250307|ref|YP_249419.1| permease [Haemophilus influenzae 86-028NP]
gi|145633639|ref|ZP_01789366.1| molybdate ABC transporter permease protein [Haemophilus influenzae
3655]
gi|145639139|ref|ZP_01794746.1| predicted permease [Haemophilus influenzae PittII]
gi|148825753|ref|YP_001290506.1| permease [Haemophilus influenzae PittEE]
gi|229847325|ref|ZP_04467427.1| predicted permease [Haemophilus influenzae 7P49H1]
gi|260581045|ref|ZP_05848867.1| permease [Haemophilus influenzae RdAW]
gi|68058506|gb|AAX88759.1| predicted permease [Haemophilus influenzae 86-028NP]
gi|144985516|gb|EDJ92332.1| molybdate ABC transporter permease protein [Haemophilus influenzae
3655]
gi|145271701|gb|EDK11611.1| predicted permease [Haemophilus influenzae PittII]
gi|148715913|gb|ABQ98123.1| predicted permease [Haemophilus influenzae PittEE]
gi|229809750|gb|EEP45474.1| predicted permease [Haemophilus influenzae 7P49H1]
gi|260092285|gb|EEW76226.1| permease [Haemophilus influenzae RdAW]
gi|301170459|emb|CBW30066.1| conserved inner membrane protein [Haemophilus influenzae 10810]
gi|309750720|gb|ADO80704.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
R2866]
Length = 367
Score = 90.1 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + N LK + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLDSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|260582802|ref|ZP_05850588.1| permease [Haemophilus influenzae NT127]
gi|260094128|gb|EEW78030.1| permease [Haemophilus influenzae NT127]
gi|309972900|gb|ADO96101.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
R2846]
Length = 367
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + N LK + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLDSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|145635439|ref|ZP_01791140.1| predicted permease [Haemophilus influenzae PittAA]
gi|145267313|gb|EDK07316.1| predicted permease [Haemophilus influenzae PittAA]
Length = 367
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 126/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + N LK + + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYQAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + ++ S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLNSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|145637645|ref|ZP_01793300.1| molybdate ABC transporter permease protein [Haemophilus influenzae
PittHH]
gi|145269168|gb|EDK09116.1| molybdate ABC transporter permease protein [Haemophilus influenzae
PittHH]
Length = 367
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 126/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNIVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K ++ + +L + N L K+V + + +
Sbjct: 181 KQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ A + ++I + A+ + ++ I + L + M LIA +S
Sbjct: 241 NTNDEAAELTLSQLID----------LDSSSAKAELHWRITLILAVPLMALIAVPLSRVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + KS G +G L + I L++++
Sbjct: 291 PRQGRFAK-ILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 376
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/355 (11%), Positives = 117/355 (32%), Gaps = 13/355 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL +F L + + ++ + +++ S A +P +++ ++P
Sbjct: 1 MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFLEFTALALPNLVRMVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ V LN SEL + RA G S WQ+ P +V ++ + ++ + + +
Sbjct: 60 VAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPAMVFGLITAVMMSILTHVLLPASI 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA------KKILPENHIWEDFTSI 182
+ N + ++ + + + +
Sbjct: 120 ATLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVT 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K ++ + ++ + + + + + +I + ++ +
Sbjct: 180 YTGGKAYLVRDGERTHLVMVDGMSQRINTETQRL--SSTIFSDFSYDISSLANKAEEKTR 237
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSR 300
+ E++ + + + + L+ VA+ LI + + FSR
Sbjct: 238 NIRAIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + F+ + + ++ L P+ IP ++ + + ++ L
Sbjct: 298 FGVWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLI--YIPTLIGLLVGLVFL 350
>gi|229845239|ref|ZP_04465372.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
6P18H1]
gi|229811834|gb|EEP47530.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
6P18H1]
Length = 367
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 125/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNIVKDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K ++ + +L + N L K+V + + +
Sbjct: 181 KQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ A + ++I + + + ++ I + L + M LIA +S
Sbjct: 241 NTNDEAAELTLSQLID----------LDSSSVKAELHWRITLILAVPLMALIAVPLSRVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + KS G +G L + I L++++
Sbjct: 291 PRQGRFAK-ILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|328952245|ref|YP_004369579.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
gi|328452569|gb|AEB08398.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
Length = 401
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 109/360 (30%), Gaps = 6/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I++R+ ++ LL ++VF+ + + + S+ +P
Sbjct: 14 PLIIYRHLWRECWDIFAVGLLAITVIVFMGRITRVMQMIITK-GVSLIDIGKFCVLLLPY 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ ++ F L+ +E++ + G+S+ QLL P + ++++ +
Sbjct: 73 LLLFTVPMAAMIAVLITFLRLSNDNEIMALKTSGVSVLQLLPPILAFALVISSTALFFSL 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
G + L+ + + D
Sbjct: 133 YATPWGNQEMRRLLSEVTKRRADLGIREQVFNNDFEHVVLFVNRVPTSGGPMEGVFLSDD 192
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++L + + +S K
Sbjct: 193 RDPQVPITIAADKALLLFDLKSERLIMQLFQGRVLRLSEDATSFHSIEFETYQVPLELFK 252
Query: 240 FSEQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
F + S + + + + + +P+ M LIA + +
Sbjct: 253 FVPKPKSEDEMFLGELRQALAQHKPGTLDYNKLLVELNRRFSLPVGACIMILIAMPLGIS 312
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + G+ + Y ++T G+ I+ P A +P + + L+ + +
Sbjct: 313 TQIKGR-AVGLIMGLVIFLLYYLLLTAAWRLGQHAIIPPGLAPWLPDFIFLFLAWGLWRR 371
>gi|121997477|ref|YP_001002264.1| permease [Halorhodospira halophila SL1]
gi|121588882|gb|ABM61462.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
Length = 372
Score = 89.8 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/355 (9%), Positives = 107/355 (30%), Gaps = 10/355 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L L ++ L + + A L ++ +
Sbjct: 10 IIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAG-GDLPGEAVAALMGLQILRYL 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP + ++ L R SEL + A G+ + + ++ ++ + + +
Sbjct: 69 GVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTVA 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +Q D ++ + ++
Sbjct: 129 APWASHTADVYAEQAARTADLGALQAGRFIGGGDAGTVYASRTDGDGVLREVFAHARDGE 188
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + + + Y +D T + + + +
Sbjct: 189 LETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLL----IDTRE 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + + + + + + +P+M+V ++L+A ++ R +
Sbjct: 245 PREVSRDREGTPTAELWAAGGL---QDRAEIEWRLSMPVMVVVLSLLAVPLAKAEPRDGR 301
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + +++ + + ++GI+ +L +++++ ++
Sbjct: 302 YGK-LLSAVLVFVAYFQLLSSGREWLEAGIVPAPLGLWWVHLLAG-VAVVLWTRR 354
>gi|328949933|ref|YP_004367268.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450257|gb|AEB11158.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 346
Score = 89.8 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/353 (13%), Positives = 110/353 (31%), Gaps = 15/353 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L L ++L+ L E+ + A RVP +
Sbjct: 3 TLERYLLREVGAYLLGGLTVVVLLLLGGVLFEVFAPLLAR-GADPLAVGQYLAHRVPEAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L ++ + SEL + A GIS ++L V + LL + +
Sbjct: 62 VRGLPIAYLFALLLALSRMAEDSELKVLLASGISRERVLLALVWFAALLALMGFVAGESW 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q + + + + K +
Sbjct: 122 VPQQLQKARQVLRQAILAKPRALLQPGTFFTDAYGRLVYVGRVKDDGIAEIRVLAPGEVL 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ-KFSE 242
++ L+ + + + + ++ +
Sbjct: 182 TAASGAF-----------VEGRLFLEDGMRVTFEGARPRTIARFARGTMPLNELAFEPPA 230
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
A+ + E+ ++ +S + ++ T ++ P ++ L A ++
Sbjct: 231 SVANLTLAELRARIQEFKRSGLPYHAE-ATAYWRKWAEPAATISFALFAVGLAFWML-GG 288
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + F Y ++ + G+ G L PV AA P +L + ++L
Sbjct: 289 SRSLGMVGVVTLTFAYYATWSVFRIMGEQGALPPVIAAWGPNLLYALAAGVLL 341
>gi|145631588|ref|ZP_01787354.1| predicted permease [Haemophilus influenzae R3021]
gi|144982788|gb|EDJ90314.1| predicted permease [Haemophilus influenzae R3021]
Length = 367
Score = 89.8 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 126/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K ++ + +L + N L K+V + + +
Sbjct: 181 KQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ A + ++I + A+ + ++ I + L + M LIA +S
Sbjct: 241 NTNDEAAELTLSQLID----------LDSSSAKAELHWRITLILAVPLMALIAVPLSRVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + KS G +G L + I L++++
Sbjct: 291 PRQGRFAK-ILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|320537761|ref|ZP_08037684.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
gi|320145384|gb|EFW37077.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
Length = 356
Score = 89.8 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 112/356 (31%), Gaps = 3/356 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + + T L +L ++L+ + DL ++ + P
Sbjct: 1 MKILQRYLLQIFFPTALVAILFFILLLEIGDLFANLPTYL-TNGVGLAPILQVMYFYFPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P L L +EL A G+ IW L+ P V+ + + +
Sbjct: 60 CISFAMPLGVLFAGAYTMGTLYARNELTSVFASGMPIWTLVLPLVILGFIFSVGMFFFED 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L + + ++ I + +N +
Sbjct: 120 RVVIHTQYKKNRLTAKLLETDKDLSTNDIVVLSENNKIIYSAEVYDAETKNLLNLQIIVR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K++ A + K + + G+I + FQ+
Sbjct: 180 TDDGEIEKVVTTAVAIWEGDAWELTKPAVYIFSKNGQIQFTDKLAAKEFTEAPENFQRNI 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S E + ++ + Q+Y P + + + SV F R
Sbjct: 240 TSIDELSVSEAATYIQKLKRTGRPYTEE-LAQYYRRFSFPFTIFLVLFFSVSVGGRF-RK 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N + + + + + Y + K + P+A AL+P ++ SLSI +L
Sbjct: 298 NILLMSLLFSLLIATVYYVTEMVTMLLAKWEYISPLAGALLPFLIFTSLSIFLLRH 353
>gi|87198521|ref|YP_495778.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
gi|87134202|gb|ABD24944.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
Length = 414
Score = 89.4 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/360 (12%), Positives = 124/360 (34%), Gaps = 8/360 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L + A L+ + + ++ + + +S + A +P
Sbjct: 8 DRYIARLVFVPMLSVFVLAASLLILDKMLKLFDFVATQGG-PVSVVFKMLANLLPEYASL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ + F L +SEL + RA+G+S +LL + +I L +L+++ +
Sbjct: 67 AIPLGLMLGILFAFRKLAMSSELDVMRAVGLSYTRLLRVPYMFAIALAALNLLIVSYLQP 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + + + ++ +
Sbjct: 127 LSRYYYEQLQFELRSGALGASIRVGEFNSLQDRTALRVDASRDEGRDLRGIFARIQTANG 186
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKMDGFQK 239
+ I R+ A + + ++ + Q + P + + ++PI + ++
Sbjct: 187 QVMVISAREGRFFANRESPDTVILRLTDGQIVQDGPGIASPRVLSFASHDLPIDLPRIEQ 246
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP-LMLVAMTLIAASVSLEF 298
F ++ + Y + + + R +++ + ++++ + + A
Sbjct: 247 FRQRGDADREYFLPELLQIGWNDRYSEEIRNQSKASLNYRLVEVVMMFLLPLLAVALAVP 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + V I + + + G + PV A P ++ +L + + +
Sbjct: 307 PKRSTSALGVFLSIVLVVAYHKVNQYGQDVAALGRMDPVIALWGPFVVFAALIVWMYWRI 366
>gi|300718541|ref|YP_003743344.1| permease [Erwinia billingiae Eb661]
gi|299064377|emb|CAX61497.1| putative permease [Erwinia billingiae Eb661]
Length = 366
Score = 89.4 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 117/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + I + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTAIVAAVNVAWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + Q + Q +FI K +++
Sbjct: 121 GPWSSRYQSEVTQNAKANPGAAALAAGQFQQSGDGQSVMFIENVKGNNFGNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ + ++ +
Sbjct: 181 GNARPSVVLADKGHMTQGPDGSQIVTLDKGTRFEGTAMLRDFRITDFENYQAIVG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++F++ + + ++ M L+ +S+ R +
Sbjct: 236 HQDVVLDPNDAEQMDFKTLAQSDKPEFRSEFHWRLTLVFSVLVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G+ L P + + + L++L+
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSSGQKARLDPALWMWVVNLSYLGLAVLL 345
>gi|51246435|ref|YP_066319.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
gi|50877472|emb|CAG37312.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
Length = 351
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/316 (14%), Positives = 110/316 (34%), Gaps = 6/316 (1%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
+ + + T P I +P +++ + F L+ EL+ +A GISI+++L P
Sbjct: 3 DLQILSAYSPTSFPNIFLYTLPMASMLGITICFSRLSTDMELLALKAGGISIYKILPPVF 62
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-----NPQQD 161
+ + + + + + E L Q Q + +
Sbjct: 63 LVASAITLIAFYFSTQLIPASELAMKKLSYQILKEKIDQGIQAHKFTDAMGDIVIYVDKV 122
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
TI + ++ I + G I
Sbjct: 123 DKETGDWHNVWVSDMRGVKQPTITMARSGSMKSNSKQMSITIKLTDGSLHRPEEQGTEII 182
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
T+N+P++ G F S E++++ + +F+ +++P
Sbjct: 183 TFKDYTINMPLETGGKNIFMLHKRLLSMPELLEQAKRWGNESKKRGRIYLIEFHKRLILP 242
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + ++ +A + L+ +R + I + G+ + Y + T+ K ++G + + A
Sbjct: 243 IGCLMLSFLALPLGLQ-ARPGKKAIGIPVGLGIFIVYYILHTVGKELAEAGTVPLIPALW 301
Query: 342 IPVILTISLSILILLQ 357
+P +L L+I + +
Sbjct: 302 LPNVLFFLLAIFWIYR 317
>gi|288962055|ref|YP_003452365.1| predicted permease [Azospirillum sp. B510]
gi|288914335|dbj|BAI75821.1| predicted permease [Azospirillum sp. B510]
Length = 385
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 121/359 (33%), Gaps = 11/359 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ L TLY G + +++ + + + L VP +
Sbjct: 4 LQRYLFRNLLIATLYSTAGLTLTIWLSQSLRLIE-IVVSAGAPMGMFLWLLLLTVPTFLG 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + + + + SELV+ RA G+ + L P +V ++ + +++ I
Sbjct: 63 VVLPLALVGAILFTYNKMTTDSELVVMRAAGVGPFSLSTPALVLAVAVMAIVLVLNVWIT 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWED 178
+ + + + + + + + + +D K+L + D
Sbjct: 123 PAAHRELVRMEYAVRSDYSQLFLREGVFNEVGDRFSVFLRDRDSDGNLHKVLIHDGRQPD 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + D ++Y+ + + ++ ++ + L
Sbjct: 183 KPVTIMGDRALMQTGADGTRFVVYDGNRQELDRKTNRLSQLFFERYAVDLKAVAP--QAA 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
RS +++ + + AE F + + A+ ++A +S EF
Sbjct: 241 DRWPDARERSTEDLMSGNVPAQDDRMRRGLIAELHHRFSSPLLALTFALVALSALLSGEF 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R Q V + L + S + +PV+ + ++ ++ +
Sbjct: 301 NRRGQSS-RVTIAVLLVMGLQAGALGLTSLAGKATVFVPLMYAMPVVALLP-ALWVMSR 357
>gi|300900316|ref|ZP_07118495.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300356206|gb|EFJ72076.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 315
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 99/316 (31%), Gaps = 2/316 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S ++ + + ++ + + P++ +AM L+A + RS
Sbjct: 240 MPGNTFSVRQLNHYIHYLQETGQPS-SEYRLALWEKLGQPILTLAMILLAVPFTFSAPRS 298
Query: 302 NQPRIIVAYGIFSGFM 317
+A G+ G +
Sbjct: 299 PGMGSRLAVGVIVGLL 314
>gi|262277385|ref|ZP_06055178.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
gi|262224488|gb|EEY74947.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
Length = 365
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 144/362 (39%), Gaps = 5/362 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL--PNYSISRGAVLAATRV 59
P L +Y K + + + F + L+ + + E + + R +L +
Sbjct: 6 PRTLIKYLIKEFSFSLMIFTVIFSSLIILTTFIQEITFFQEKEVSDNFLLRMLLLTFIKS 65
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I FI L I + + +E+V G S+ + + S LGI +++
Sbjct: 66 PTLIINSSSFIFLFAGIFFYVKFMKNNEIVPISLSGFSMNFITLVPGIFSFFLGIVIIII 125
Query: 120 INPIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+PI++ K + + + K++ S W++ I A K+ +
Sbjct: 126 FSPISSELSKYYESIKKNYSKNDNLIVMSATGIWIKEKKNDNIYIIRADKLSGNDFAKLK 185
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
SI NK R + D II + +K+ R NS T I ++ +
Sbjct: 186 NISIYTFSMNKFKERINGDNGIIVKNNLKITPANLVSDVRNI-SLNSYTYISKINLENIK 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S + + ++ K F +F+ + +P +L AM +++ +++
Sbjct: 245 NYFVNADTFSIWSVKNALNDVRKMGYF-GEEIIIKFHKYLSLPFLLFAMIVLSTFFTIKM 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + I GI +G ++Y + + GKSG L + + +PVIL SI IL+
Sbjct: 304 NFTFNNFIYAFLGILTGIIVYFFYDLSIAVGKSGKLPLILSVWMPVILINVFSIYILINN 363
Query: 359 ED 360
ED
Sbjct: 364 ED 365
>gi|313680814|ref|YP_004058553.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153529|gb|ADR37380.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 335
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 104/354 (29%), Gaps = 21/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + LV DL + + + ++ L R+P +
Sbjct: 2 LQRYLLREILTPYLLGTLLFIGLV-TTDLLSSLSGVFLSRGTTWTQVGELVLYRMPYTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL A GI+ +LL P + + + + +
Sbjct: 61 VALPLGLVFAVLVALARWIRDSELKAVYAAGIAPVRLLAPVLGLAAFVAAVAWVNAGWVK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ DLI + + +T
Sbjct: 121 PEAQARYDDLIYEIYYGHAPSGVLTNAAYAPQGLGVYYARRVYPDDAGGGRLQGVRVVTP 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D AD + + LK + G P + L P + + E
Sbjct: 181 DG-----AVWSADEGVWKDANWVLKNAWKTAPGARPEFWETIPLPFPSRFVEKKTTYESL 235
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
E+ K + +A + ++A+ +AA V L +
Sbjct: 236 PMAELRELAK-----------VDPQARFPLQRRHADAVGVIALAWLAAVVGLSL---REA 281
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ F Y + T+ + ++ P A + ++ +L++ +
Sbjct: 282 AWAFVAVVLLIFGYYVLWTLAAQLARFAVVGPY-GAWLADVVYFALALAGTRRL 334
>gi|118590094|ref|ZP_01547497.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
gi|118437066|gb|EAV43704.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
Length = 395
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 118/360 (32%), Gaps = 11/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + + + +V+ + + +I + + +P
Sbjct: 1 MKTIERYIIRRTVYAFTLTIAAMTGVVWATQALRQLDLVTSK-GQTIVQFIGITMLALPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + PF ++ I+V +L+ SEL++ A G S + +L P ++ S+++ + T +
Sbjct: 60 LIVIVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVMLFSLVVMLLTASMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +G I + + + ++ + + + + T
Sbjct: 120 YVAPAGLAQLRTEITRVRADLVANIVKPGRFITVEDGLTFHIRNRSGKGTLDGLLMHDTR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
A V ++ + + S ++ +
Sbjct: 180 DPETAFTYQADTGQIVEAADRTLLVMQNGTIQRRPKQQGDISIVRFQSYAFDLSNLIPEA 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS-- 295
+ + + RS ++ + + + + + + PL +A LI +
Sbjct: 240 GEPVYKASERSTLNLMSPGRHDEYA-LKNPDKLVQELHERFSQPLYCLAFGLIVFAFLGK 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV--ILTISLSIL 353
+R + V I S +L T + + + +L ++P+ + +SI
Sbjct: 299 ARTTRQGR-GFAVLGAICSCVLLRTTGFGVTAISGTSTVLLSLLYVVPITGAVLALISIF 357
>gi|226357374|ref|YP_002787114.1| membrane protein; permease [Deinococcus deserti VCD115]
gi|226319364|gb|ACO47360.1| putative membrane protein; putative permease [Deinococcus deserti
VCD115]
Length = 368
Score = 89.4 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/364 (11%), Positives = 113/364 (31%), Gaps = 12/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
RY L + L ++L + L E+ + + A + A VP
Sbjct: 1 MKRFERYVLAEILPLLVGALASVIVLFVLAALQEVIAPLLAKGARPLL-VARVLALNVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + ++ L+ SEL + A GI +L P ++ + + + L+
Sbjct: 60 AAARALPIALMFATLLGLSRLSSDSELKAALASGIPARRLYRPVLLLGLGVTVLAFLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + + Q+ + + + + + + D
Sbjct: 120 GLLPRTKIEERKVKQEIVFDNPRVIGLGAQEPGGQSLVLRDALGRAISVGEVRAGGELRD 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLK-KVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+T+ + A + + L+ + + + +
Sbjct: 180 LRIVTMQGGSVPREVITAREGRLKSGSNVLELQGGQRVTYQDGRPVTILSFERGTLPVQD 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF------YFLIVIPLMLVAMTLIA 291
+ ++ + + + + PL +A+ A
Sbjct: 240 VQADLDTGGKALKANYLPLRELLARTNSYRQQHIQAPAEFTALHQKFAEPLAALALAFFA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+++ +S + + + + + F Y ++ + G++G + V AA P ++ +
Sbjct: 300 VSLAVFTFQSGRD-LGLVWALLLAFAYYATWSVFRIMGENGAIPGVLAAYAPDLIAVVAG 358
Query: 352 ILIL 355
++L
Sbjct: 359 AVLL 362
>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
Length = 376
Score = 89.4 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 41/355 (11%), Positives = 117/355 (32%), Gaps = 13/355 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL +F L + + ++ + +++ S A +P +++ ++P
Sbjct: 1 MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFLEFTALALPNLVRMVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ V LN SEL + RA G S WQ+ P +V ++ + ++ + + +
Sbjct: 60 VAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPALVFGLITAVMMSILTHVLLPASI 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA------KKILPENHIWEDFTSI 182
+ N + ++ + + + +
Sbjct: 120 ATLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVT 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K ++ + ++ + + + + + +I + ++ +
Sbjct: 180 YTGGKAYLVRDGERTHLVMVDGMSQRINTETQRL--SSTIFSDFSYDISSLANKAEEKTR 237
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSR 300
+ E++ + + + + L+ VA+ LI + + FSR
Sbjct: 238 NIRAIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + F+ + + ++ L P+ IP ++ + + ++ L
Sbjct: 298 FGVWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLI--YIPTLIGLLVGLVFL 350
>gi|78212778|ref|YP_381557.1| permease [Synechococcus sp. CC9605]
gi|78197237|gb|ABB35002.1| possible permease [Synechococcus sp. CC9605]
Length = 386
Score = 89.4 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 42/328 (12%), Positives = 107/328 (32%), Gaps = 16/328 (4%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ QM + N I+ + +P + +P TL+ ++ VF L+ SEL R
Sbjct: 45 MFELVRQMVDK-NLPITIAVQVLLFSIPRWLAFSVPIGTLMASLFVFTRLSANSELTALR 103
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
++GI+ ++++ + S+++ +FT ++ + + ++ +++ ++
Sbjct: 104 SLGITTVRMISAALALSMVMTLFTFVLNDVVVPRSQRYAEVTLKRSLGRSLASETGRDII 163
Query: 153 MQISNPQQDI----------FIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ D + + + + + + R D +
Sbjct: 164 YPRFGTRFDSDGEEDGKGLNQLFYSRKFQDGEMADVTVLDFTRSGFTQMLRADRAIWNED 223
Query: 203 NDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
D + + + + + E ++
Sbjct: 224 QASWDFLDGQILTLAANGSSTKADFDRYVYPLGSGPVRLAGIEKDAVNMTVAEALQAQRL 283
Query: 259 SNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
++ R + +P+ + L A++ + S + + +
Sbjct: 284 YEEAGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPSYRSSRSFSFVLTLGIIAV 343
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVI 345
Y I S G G L P+ AA +PV+
Sbjct: 344 YYVIGFSFSSLGVKGTLPPILAAWLPVM 371
>gi|290473524|ref|YP_003466394.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
gi|289172827|emb|CBJ79598.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
Length = 366
Score = 89.0 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 117/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L E+ + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLG-AAVEGSVPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKGVLVKSALILALFTSMLAAANVLWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + + ++IG K +++
Sbjct: 121 TPWSSKYQEQVLADAKANPSLAAIMEGQFKPSRDGNMVLYIGDVKGNNFENVFLAQLRPV 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + N +Y + ++ + +
Sbjct: 181 NNQRPSVVIADGGHMEERPNGNQVAVLHQGVRYEGTALMRDFRITDFKNYQAVIGHKAAD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + ++ + + + ++ + + + ++ M L+ +S R +
Sbjct: 241 IDSDKVEQ-----KTFSQLWHKGDEDSRAELHWRLTLIVSVLVMALLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G G L P + +L++ +
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNGGRGKLDPAFWMWLVNGAYFALALAL 345
>gi|183600430|ref|ZP_02961923.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
gi|188020226|gb|EDU58266.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
Length = 365
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L M++ F +I N L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLMLIFFSQKSIDILG-AAVQGNIPSDLVLPLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ L+ +V + L + + I +
Sbjct: 61 QLILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLATLTALVAIGNIAWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ K N + + ++IG K +++ T
Sbjct: 121 LPWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDRNIVLYIGDVKGNDFKNVFLAQLRAT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + + +Y + ++ +
Sbjct: 181 NEQRPSVVVADSGYMREDADGRQIVVLDEGTRYEGTALLRDFRITDFKNYQAVIDHKPSD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + +++ + +F++ + I +V M L+ +S R +
Sbjct: 241 ARNDRVEQ-----KNMLQLWKANDFDSNAEFHWRLTIVFSVVVMALMVVPLSEVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + +++ + G + P A + ++L+I++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSTLRNSAEKGDVDPKYAMWAVNLGYLALAIIL 345
>gi|328949932|ref|YP_004367267.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450256|gb|AEB11157.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 335
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/354 (11%), Positives = 90/354 (25%), Gaps = 21/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L+ DL + + + + R+P +
Sbjct: 2 LGRYLLREVLPPYLLGTLLFIALI-TTDLLASLSGVFLRQGTPLVEVLQIVLYRMPFTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ R SEL A G+S +LL + S ++ + +
Sbjct: 61 IALPLGLVFAILIGLARWVRDSELKAMYASGVSPLRLLPVLLGLSAVVAGGVLFNAAWLK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L+ + E+ +
Sbjct: 121 PEAHARYEQLLYRVYYGTVPSGVLSNQAYAPEGLGVYFAARIYPDGQGGGRLENVRVVEP 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R + + + L+ ++ L P + E
Sbjct: 181 SGALWSAAR-----GVWQDARWVLEDAYRINPDGTVETRSRVPLPFPAQFVPPTTSYEAL 235
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
E+ + + A ++A+ +A V L +
Sbjct: 236 PLGELRELAR-----------VDPEARFPLQRRYADAFGVIALAWLAGVVGLGL---REA 281
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ F + + T+ + ++ A +P + L+ +
Sbjct: 282 AWAFVAVVLLIFGYFVLWTLAAQLARFALVGAY-GAWLPNAVYFLLAAWGTRRL 334
>gi|23016381|ref|ZP_00056138.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 372
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 105/362 (29%), Gaps = 10/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI RY + L ++ ++++ + SI L +P
Sbjct: 1 MSGI-TRYMMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNK-GLSIGAFLKLTILLMP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IIP V + + L EL++ RA G+S L P ++ + + L+
Sbjct: 59 GFLVVIIPISLFAVVLFTYNRLIADRELIVLRAAGLSHLSLARPAIILGLAVSAVGYLLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + ++ +++ + + +
Sbjct: 119 CWIIPHTVRSFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDK 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKL----KKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ R + + ++V + ++ T++
Sbjct: 179 RHPQRAVTLMAERGALVYTEQGPRVLMINGNRQEVTPGTGKLSLLYFDNYTVDFNTATGN 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
RS E++ R +++ + + PL + L+AA+V L
Sbjct: 239 KPDRFRDARERSTLELLSMDDSMENKGEL--RRFKSELHSRLASPLYNLGFPLLAAAVLL 296
Query: 297 EFSR-SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ V + + + SG L V + L I+ + +L
Sbjct: 297 TSGFDRRGQTVQVMVSAALMVAVQALALGASNLS-SGNLAFVPLIYLNATLPIAFGLWVL 355
Query: 356 LQ 357
+
Sbjct: 356 AR 357
>gi|117618567|ref|YP_858153.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559974|gb|ABK36922.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 368
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/344 (12%), Positives = 116/344 (33%), Gaps = 6/344 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY F+ LKT L L +++ +I + + L +P +
Sbjct: 2 IVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAAD-GEVPTRLVSTLLLLNLPNMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L SE+ + A+G S ++ +V ++L +
Sbjct: 61 LLMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ +I ++K + +M++ + + + + + +
Sbjct: 121 APQAKEREYQVIDEFKADPGISFLQAGRFMELDK--GRLVAYIQDLNDKGSKLQKIFVLQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K A ++ D L+ + R N+ I + +Q
Sbjct: 179 RSQDGKPPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQ 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
RS + + + + + + + + +PL ++ +T + ++ R +
Sbjct: 239 EMERSNRK--AAAKPTMELLGTQDNQLMAELQWRLSLPLSILVLTFLVVPLARVNPRQGR 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+ I + +++ +S SG L + ++
Sbjct: 297 YAK-LLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLVY 339
>gi|291616051|ref|YP_003518793.1| YjgP [Pantoea ananatis LMG 20103]
gi|291151081|gb|ADD75665.1| YjgP [Pantoea ananatis LMG 20103]
Length = 366
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 115/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + Q K N + S+ +F+ K H++
Sbjct: 121 GPWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ + ++ +
Sbjct: 181 GNARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQAT 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + ++ I + ++ M L+ +S+ R +
Sbjct: 241 LDPNDVDQ-----ATFATLLSNKTPEFRAELHWRITLVFAVLVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G G L P + I ++L+I++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLALAIVL 345
>gi|260576761|ref|ZP_05844746.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
gi|259021013|gb|EEW24324.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
Length = 376
Score = 89.0 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 111/359 (30%), Gaps = 11/359 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY L +F L + + ++ + +++ S + +P +I
Sbjct: 4 FDRYLLSQLLALFGFFSLVLVAVYWINRAVLLFDKLIG-DGQSALVFLEFSLLTLPSVIM 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF V + L R SELV+ +A G S +L P + +++ ++++ +
Sbjct: 63 LVLPFSAFVATVYGINRLTRDSELVVMQATGFSPLRLARPVAIFGLIVAAMMAVLLHVLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +N + +M + ++ T
Sbjct: 123 PESRATLAQRTLEVSENLAARFLMDGQFMHPAKGITLYIREISPKGELRDVFLADTRSPT 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKL----KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R V L + + + T ++ + G +
Sbjct: 183 SHATYTASRALLVKGDSGPKLVMLDGMVQNLNNKEGRMSVTRFADFTYDLATLIAGPKVL 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
++ S Y+++ + + Q + + P++ +A LI S + L
Sbjct: 243 KRNASALSTYDLLWPSAEILQETAETPEALWFQAHNRLAQPILGLAAALIGFSALLLGAF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVILTISLSILILL 356
+A + + I T M S G AA + ++++ +L
Sbjct: 303 SRFGLWRQIAVAVALMITVQGIATTMLSLGLKQPEFWPLAYAA---PLAGLAMAAGLLW 358
>gi|260432791|ref|ZP_05786762.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
gi|260416619|gb|EEX09878.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
Length = 379
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 110/360 (30%), Gaps = 13/360 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
YF + L +F L + + ++ + ++ S A +P +I+
Sbjct: 4 FDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFERVIS-GGQSAMVFLEFTALTLPTLIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + L+R SE+ + A G S W+L ++ ++ G+ ++ +
Sbjct: 63 TVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLSRGVILFGLIAGLMMAVISVVLR 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA------KKILPENHIWED 178
+ + + + Q + +M + ++ + +
Sbjct: 123 PASVEQLERRQAEVAGDVTAQLLNEGEFMHPAPGVTVYIGRIDLDGTLNEVFVSDRRDRN 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ ++ + S ++ +
Sbjct: 183 NPATYSSTSAYLLSDDTGVHLVMVDGVALRLDREGNTLSSTQFQDASYDVSELTRKGDIG 242
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
+ S + E+++ + S+ + + + + VA+ ++ A++ L
Sbjct: 243 RRS--IEAVPTSELLRDLDAVAASDGYPRGELVEELHQRFSWIAICVAVAMVGYATLMLG 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG-ILLPVAAALIPVILTISLSILILL 356
+ +L + + L PV P +L I +S + L+
Sbjct: 301 SFSRFGLWPQIFAAFTILVLLEGVRGFVSPIVIKDARLWPVL--YGPALLGIVISCVFLV 358
>gi|291287413|ref|YP_003504229.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884573|gb|ADD68273.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
Length = 349
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 104/356 (29%), Gaps = 10/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + ++L+ + L ++ + N +P
Sbjct: 1 MKLLHKYILKEIYPIFFLGNVFFVLLLLLDKLIDLADLFFTK-NVPAFLIIQTIVYYLPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP ++ ++ F L+ SE+ RA G P ++ + + +++
Sbjct: 60 FLVITIPTSAMLAVMIGFGRLSSDSEVTAMRAAGAGKKFFTTPTIIFGLTAFLLGIMMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +G + I + + I A K +
Sbjct: 120 WLMPAGSRNAIGNLSKIAKLVSINDMKEKELYDELPG---IVFYAVKKDSNAKYRKMVII 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + LK +
Sbjct: 177 DKAQHSVITANEAEILPSGNAGLLMNLKNGRIVTLNEDGKHSKINFDTFTLNSPLIDAKD 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S + + N + +F I +P + M++ S+ + F RS
Sbjct: 237 ISVNSERIMQTKDLIE-----NFQEAPLYKFEFSKRISMPFAAIIMSIFGMSLGIFFHRS 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + I + + ++F +SG + P AA +P IL +++ +
Sbjct: 292 GR-SLAIPITIAVVAVYNILFFAAENFAESGRIEPFLAAWLPNILFALIAVFFYRR 346
>gi|148827127|ref|YP_001291880.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Haemophilus influenzae PittGG]
gi|148718369|gb|ABQ99496.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Haemophilus influenzae PittGG]
Length = 367
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQQILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + N LK + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLDSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|330993929|ref|ZP_08317859.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
gi|329758875|gb|EGG75389.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
Length = 388
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 99/360 (27%), Gaps = 8/360 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + L + + L+++ + + S+ L +P +
Sbjct: 17 ILDGYMLRQLLLALVATTGALVTLIWLTQSLHFVSLVVGR-GLSLRVFLELTGLLIPSFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P T VV ++ L EL + +A G+S + P ++ + + + +++ I
Sbjct: 76 AVILPITTFVVVQFIYQRLGGDRELTVMQAAGLSPALMARPGLMCAAIATLVCLVLNVWI 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
Q ++ + Q+S+ K + I +
Sbjct: 136 VPVSYHAFRQYEFQIRNRMAAFLIQDGVFTQVSDNMTVYIRARDKDGTLHGIMVEDDRTP 195
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDGFQK 239
+ + + + +V L + N T
Sbjct: 196 GAEATILAEEGNLVIINDQP-RVVLFNGSRQEIDSHTGRLNVLTFTRNTIDLSSPHTAHT 254
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S +++ E AM + ++ S
Sbjct: 255 RLPDANELSIAQLLHPDLHQYSRRDESKMFIEAWRRLSTPFCAFSFAMIGLVGAMGGSHS 314
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R V I + + + ++++ L + + + + ++L E
Sbjct: 315 RQAGIVRPV-LAILAVVAVQALTLLVQNLASRN-LQLMPLMWLCTVGPGIVCAIMLFWPE 372
>gi|330874293|gb|EGH08442.1| hypothetical protein Pgy4_05807 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 213
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 8/217 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
D + ++ A A D +LK V +
Sbjct: 173 RYRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFN 209
>gi|262341091|ref|YP_003283946.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272428|gb|ACY40336.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 381
Score = 88.6 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/371 (12%), Positives = 115/371 (30%), Gaps = 17/371 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y + ++ + + +++ +I I
Sbjct: 5 KKLDLYMIRLFITPFFIIFSTIFAVFMIQFFWSQIDELTGKN-INILIIIKFVFYFGISI 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + P L+ +I+ F +L+ EL+ ++ GIS+++++ P + + +L I +
Sbjct: 64 IPLVTPISLLLTSIITFGHLSENQELIAIKSSGISLFRVMKPILGITCILSIGLYFFSDL 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIP--------WMQISNPQQDIFIGAKKILPENH 174
K L + K +++I + + +
Sbjct: 124 AIPKAIKQAKKLGYKISSTHPSFKLKEGIFVNLLPDFFIKIDRKKNQQLHNIFIFFYDKN 183
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + + + N + + + Q + ++ N I
Sbjct: 184 LLVNTILSQKGFFIPNKDQSEFIQFKLINGILYSENTNKEQSSYQIVQFDTLIQNFQIPF 243
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ-------FYFLIVIPLMLVAM 287
K + + S + +I+K++ K H + P+ + M
Sbjct: 244 YEEIKNLDDYESYNTQNLIQKINLLKKEKSKHQKENIHKLAKLQLELQKKFTFPVTCIIM 303
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L A + R + + YT++TI ++ + + P A IP +
Sbjct: 304 FLTGAPLGA-IIRKGGIGYPTMIALAIFIIYYTLLTITQNKVEKVEIYPWIGAWIPNFIF 362
Query: 348 ISLSILILLQK 358
+SI + +
Sbjct: 363 FPVSIWMTYKT 373
>gi|254427836|ref|ZP_05041543.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
gi|196194005|gb|EDX88964.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
Length = 372
Score = 88.6 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/362 (10%), Positives = 119/362 (32%), Gaps = 9/362 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P IL RY + TT+ ++++ + + + ++ A R+P
Sbjct: 3 LPLILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGE-IAADALFLVMAFRMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q I+P + ++V ++ +E+V+ +A G +++ VV ++ +
Sbjct: 62 EFLQMIVPLSLYIALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATTLVGMFS 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G+ + ++ KD + + + A+ + E + E+
Sbjct: 122 LYVTPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVF 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGF 237
+++ + + V + + + +
Sbjct: 182 VADARFESQGEAGRLLTVWAKSGKLVVEEGISYLLLTDGFQYQGKPGQLDYKEVGFKEAR 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ + + N A + + + + L + M L A ++
Sbjct: 242 VRIGGEKTDSRPPKVRGRSTQELVDQRADNKAALAELQWRLSLILTVPIMALAAIPLARV 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK--SGILLPVAAALIPVILTISLSILIL 355
R + + + + ++ + +S + G L + + + + +++ L
Sbjct: 302 NPRQGR-FYRLIPAVLGYMLYVGMLLVCRSAIEDHKGSLPWYLSMVWIHL--SAGAVVFL 358
Query: 356 LQ 357
L
Sbjct: 359 LY 360
>gi|319776036|ref|YP_004138524.1| permease [Haemophilus influenzae F3047]
gi|329123194|ref|ZP_08251763.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
gi|317450627|emb|CBY86847.1| Predicted permease [Haemophilus influenzae F3047]
gi|327471539|gb|EGF16983.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
Length = 367
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/353 (15%), Positives = 125/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P++
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLG-AAANGNVPADLVFSLLGLGMPIMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI K +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K +I + +L + + LK + D T + G+Q
Sbjct: 181 KQTKPSVITAEKGELIALPSGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + S + + ++ I + L + M LIA +S R
Sbjct: 241 NTNDEVAELTLSQLIDLDSSSA-------KAELHWRITLILAVPLMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + KS G +G L + I L++++
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345
>gi|168704909|ref|ZP_02737186.1| hypothetical protein GobsU_35554 [Gemmata obscuriglobus UQM 2246]
Length = 366
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/352 (13%), Positives = 93/352 (26%), Gaps = 9/352 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN---YSISRGAVLAATRVPL 61
+ R F + ++ + L+ + L VIDL + P S RVP
Sbjct: 4 IDRMFLWTFFRSYIIVLISLVGLFIVIDLFTHLDAFVNKPGGFVASARHITYYYGNRVPE 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
F+TL+ + R +EL+ + G+ + + P +G+ + L
Sbjct: 64 YFDLFGNFVTLIAGAFTVAWMQRNNELLPLLSAGVPTRRAIRPVFLGAAVTLALGPLNQE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFT 180
+ + I F K + E
Sbjct: 124 FLIPEVADALTSQRDDPDQAKAQSLMGAYDSSGIHFEGLAGFRKDKLVKKMCVTFPEHSR 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S + + + L + + +
Sbjct: 184 SGMVHLTAQEAVFRPKQGDDPLTGGWLLTDATPDTFTGEIPLNLTVLGTGRFFVKVQDAD 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ----FYFLIVIPLMLVAMTLIAASVSL 296
+ + I S + R + F+ + PL+ + M + +V L
Sbjct: 244 YDAVCRGGAWYIYAATSDLQTMLVDPEPRRRGKLAVLFHTRVTRPLVGMVMVVFGLAVIL 303
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
I + + + K G +L P AA +PVIL
Sbjct: 304 GNPNR-HVIISSGLCLIVSAATFLFVIACKYLGDQDVLPPPLAAWLPVILFG 354
>gi|253997951|ref|YP_003050014.1| permease [Methylovorus sp. SIP3-4]
gi|253984630|gb|ACT49487.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
Length = 366
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 115/353 (32%), Gaps = 10/353 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + + T + L +V + + + + L + + I
Sbjct: 5 RSLLQELVGTAIGAFLVLFGIVIAQRVAYYIG-VAAKGSLASDAINTLLGFSMLKFLPMI 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + ++ +R SE+V+ + G+ + + P + +I + ++ +
Sbjct: 64 LSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSITID 185
G + Q K + + + N + ++ +
Sbjct: 124 ATNKGSEFRDQLKSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQHQR 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + +A ++ + ++ Y+ + ++T + E+
Sbjct: 184 LGVVVASQGHRTVADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEEPP 243
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ ++ + N +N + + IP+ + L+A +S +RS +
Sbjct: 244 GTAALGSVELLKNHNPANNAEL-------QWRLAIPISAFLLVLLAIPLSFVDNRSGRSA 296
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + +++I++++ G L PV + + L+I + ++
Sbjct: 297 -NMMLALLIYIIYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMFYRR 348
>gi|328948914|ref|YP_004366251.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
gi|328449238|gb|AEB14954.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
Length = 447
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 117/352 (33%), Gaps = 10/352 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L L + ++ FV + + + + I+ L +P +I
Sbjct: 82 ILVRYIAKELLLYFLICFVFFFVVFFVNQILLLAETILKKR-VPINSVLKLILYCLPNVI 140
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q PF TLV ++ L +E++I RA G +L + +L+ +F+ ++ +
Sbjct: 141 SQSAPFATLVGFLMCLGRLVTDNEILIFRASGQRYSLILKSVLAMGLLISVFSFIMNDYF 200
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK------ILPENHIWE 177
G L +Q + + + ++++ I +K +
Sbjct: 201 LPIGTLKYNRLFKQIIVSNPAIELESKSIKRMNDSTLVIGNVSKNNVSDIVLFDSEKDGV 260
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + K + + N + L I LNI
Sbjct: 261 QRIIMAGNSDVKKSSTPGVIMQLDMNSPIVLSLDKSKTENYESISAEKLRLNIFEDSIIS 320
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF---YFLIVIPLMLVAMTLIAASV 294
+ +++IK++ + N R T +P L+A +
Sbjct: 321 SSNGTSPREMTSWDLIKRIKKMKQENSSTKKRLNTFILECNKKFSVPFGSFFFALLAFPL 380
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+L F + + + + +GI + ++ I + FG G P +
Sbjct: 381 ALIFGKKDGQTLGLIFGIILSVLYWSATIIGQMFGIRGGYNGFWMMWTPNFV 432
>gi|302338545|ref|YP_003803751.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
gi|301635730|gb|ADK81157.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
Length = 381
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/371 (12%), Positives = 121/371 (32%), Gaps = 16/371 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I Y K + + + + FV L + ++ +++ +L +P
Sbjct: 10 FRIADAYLLKEFFFSFCIAFIFFFFIFFVNQLLLLAEEVLSKR-VGVTKVLLLILYSLPA 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ PF L+ ++ + +E+ RA+G+S +L P ++ ++L + +
Sbjct: 69 ILAFTFPFSALLGTVMAIGRFSSDNEITAFRALGVSHLRLFFPVMLLGLILSGISFFSND 128
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G L + + + + + + + + + + I +
Sbjct: 129 VLLPRGTVQFGRLYRDILYSNPALELEPYAVRRYKDTVLVTGAISDREISDLVILDHDED 188
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV-----VEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + D ++L++V + + ++ NI +
Sbjct: 189 QNERMLSAKRAYLEQDEKENGVISLRLEEVFGHTAKKREGDFDYFTADTMEYNILLSSFT 248
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR---------AETQFYFLIVIPLMLVAM 287
+ + S + ++ + + +FY + IPL
Sbjct: 249 YSINNLTPREMSTAALYGEIQTMEAKKKEDQNKKRFDRTLQLYKIEFYKKLAIPLGCFTF 308
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
A L RS + + G+F+ + ++ + ++ G + A P I
Sbjct: 309 MFFAFPAGLLPKRSGRW-VGFVLGLFAAAFYWMLLIVGQTLGVRFQVSAALAMWFPNIFI 367
Query: 348 ISLSILILLQK 358
+ +LI L +
Sbjct: 368 AFIGLLIYLSR 378
>gi|110833357|ref|YP_692216.1| hypothetical protein ABO_0496 [Alcanivorax borkumensis SK2]
gi|110646468|emb|CAL15944.1| membrane protein, putative [Alcanivorax borkumensis SK2]
Length = 368
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/356 (10%), Positives = 115/356 (32%), Gaps = 7/356 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + TT+ ++++ + + + ++ A R+P +
Sbjct: 2 ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQ-IAADALFLVMAFRMPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P V ++V ++ +E+V+ +A G +++ VV ++ + + +
Sbjct: 61 QMIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G+ + ++ KD + + + A+ + E + E+
Sbjct: 121 TPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVAD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+++ + + V + + + +
Sbjct: 181 ARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ ++ + + N A + + I + L + M L A ++ R
Sbjct: 241 GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGK--SGILLPVAAALIPVILTISLSILI 354
+ + + + ++ + +S + G+L + + + + L+
Sbjct: 301 QGR-FYRLIPAVLGYMLYVGMLLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLL 355
>gi|302391952|ref|YP_003827772.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
gi|302204029|gb|ADL12707.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
Length = 372
Score = 88.2 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 132/356 (37%), Gaps = 6/356 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ +Y K L L+ I++ L E+ + + ++S L ++P I
Sbjct: 5 KLIDKYILKEVTILFLIGLIIISIIMLSSFLFELTDLIIIRK-VALSSVLKLLIYKLPTI 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + IP L I+ L++ +E+ R ISI++L+ P ++ +++ L+
Sbjct: 64 IVRAIPMSVLFATIIGLGRLSKDNEITALRMGSISIYRLILPLIILGLIISGGNYLLNEK 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K ++ + + + + + + + +
Sbjct: 124 VVPFSNKRFQVIMNETVLKSRMPEIKENIFFKGTRNKLFYIGKYNESQSTVKDIVIYELD 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + ++ + +Y I+K+ +F++
Sbjct: 184 SKQDYPNIIMANKGRVYKDNKWELNEGYIYKYNNDGNLINKDKFKDITVGFKANINRFAD 243
Query: 243 QF--ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + S E+ +++ F K +++ +P + L+ + +S++
Sbjct: 244 QQSPSEMSIKELKEEIEFLKKIGA-DPNSLLVEYHLKFAMPFSALIFILVGSILSIKGK- 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
N + + + I F Y ++++ +S G++ + P+ AA + + I L ++
Sbjct: 302 -NSKGVNILFTIIIIFFYYLLLSLSRSLGRNEVFSPLVAAWLTNFIFIILGAILFY 356
>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 385
Score = 87.8 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/356 (13%), Positives = 121/356 (33%), Gaps = 8/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ L LL +++++ + + +I + + +P +I
Sbjct: 4 LDRYVFRSAASAFLGTLLVLTLMIWITQALRELD-IMTTQGQTILAFVFITSLALPALIL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + F +N SE+V+S A GIS W+ L P V+ ++++ ++ +
Sbjct: 63 GLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVAACCSVLSLELV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + I + + + + + +++ I+ +
Sbjct: 123 PAAMRQFRYEISRVRADVVAFIAQPGRFTTLADGMVFHVRERNANGVLGGIFINDARDPK 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQKF 240
+ R + + + + ++ ++ +
Sbjct: 183 QTNTYLAERGQVVDNKDGTFLILEEGAIHRRTPGKPDSNVVEFQRYAFDLSPFTSNGENA 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ RSF E++ + I + R + + + +PL ++A IA + +L R
Sbjct: 243 VYRAPERSFRELLNP-DPKDYVYILESGRFTEELHRRLSLPLYVLAFFGIACA-ALAEPR 300
Query: 301 SNQPRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + +A + F++ + + G + + + I S L L
Sbjct: 301 TTREGRGLALAATTPFVIVLQVTSFGLINQIRGNPSVIPFVYLVPAVFIVGSALSL 356
>gi|283833700|ref|ZP_06353441.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
gi|291071386|gb|EFE09495.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
Length = 356
Score = 87.8 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 101/356 (28%), Gaps = 9/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + + + + +++ + +V +
Sbjct: 1 MRLIERYIMFEVSRLVAIIVGFLIFIFAIYSAQRYLTDAAN-GTLALTAVLAIVFYKVII 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + L+ SE+ A G S +L + +I LGI L+
Sbjct: 60 ALEMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D + + + +T
Sbjct: 120 FGRPWAYMQIYRLEQQSQSELDISHLRARKFNVNDHGHMILAATISPDTGHLTDMLIYTP 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
H D V L Y+ ++ + + +
Sbjct: 180 SENTSSLFRAHCGDITNPSPLTPSVALHSGTSYRLDHHNGQGDNGQIFQRLNIQL----- 234
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+K S + + + I + + M L+A SVS R
Sbjct: 235 --KPLMQNPITRRKASSMTALRTSTDPGDTAELQWRISRGINALLMALLAVSVSRVKPRQ 292
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ + + Y + ++ +G L + + IL + +++++
Sbjct: 293 GRFSTLIPLSLLFTCIFYG-GNVCRTLVANGALPVIPGVWLVQILMLFGVGMLIVR 347
>gi|261345122|ref|ZP_05972766.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
gi|282566810|gb|EFB72345.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
Length = 365
Score = 87.8 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F +I N + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLLLIFFSQMSIDILG-AAVQGNIPSNLVLPLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ L+ +V ++L + + I +
Sbjct: 61 QLILPLSLFLGLLMTYSKLYTESEITVMHACGLGKNVLVKAALVLAVLTALVAIANITWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ K N + + ++IG K +++
Sbjct: 121 LPWSSQYKEQVLGDAKANPGLAAMVEGQFKTTKDNNFVLYIGEVKGNDFKNVFLAQLRTA 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + N + + +Y + ++ + + +
Sbjct: 181 NEQRPSVVVADSGYMKEDANGRQVVVLDQGTRYEGTALLRDFRITDFMNYQAVVDHRTTE 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + ++ +F++ + I +V M L+ +S R +
Sbjct: 241 VRTDKVEQ-----KTMMQLWNGNDPEINAEFHWRLTIVFSVVVMALMVVPLSEVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + + + +++ G + P A + ++L+I++
Sbjct: 296 VLSMIP-AMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLALAIVL 345
>gi|253997571|ref|YP_003049635.1| permease [Methylotenera mobilis JLW8]
gi|253984250|gb|ACT49108.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
Length = 374
Score = 87.8 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 119/356 (33%), Gaps = 11/356 (3%)
Query: 5 LWRY-FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+R+ K + T L + +V ++ + + +
Sbjct: 2 LFRHSLIKELISTAAGAFLILIGIVVAQR-AGTLVRLAAKGILPNDAITTILGFNMVKFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++ R SE+VI + G+SI + P + + +F + + +
Sbjct: 61 PMVLSLSLFLAVLMTLSRWYRDSEMVIWFSGGLSINNWVRPVLTFIFPVILFILALSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSI 182
G Q + D + + +N + F+ ++ T
Sbjct: 121 MPWATSKGELYRTQLEARDDLATISPGVFKESANGDRVFFMESFDELGNVVKNIFVQTMQ 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + ++ V ++ Y+ R + ++TT ++ E
Sbjct: 181 HQKLGVIVAAQGSRYTEKNGDNFVLMENGKRYEGRRGSAEFSTTTFEKYAIRIEAKEAKE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + +S +N +N + + + + IP+ + ++L+A +S R+
Sbjct: 241 EPPSTQSKSTKELVSSANSTN-------KAELQWRLAIPISALILSLLAIPLSALDPRAG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + +++I +++ G L + + L+I + ++
Sbjct: 294 RSA-NFILALVIYIIYNNLLSIFQAWTAQGKLSALVGLWPVHAFFLLLTIYLFRRR 348
>gi|310766279|gb|ADP11229.1| Putative permease [Erwinia sp. Ejp617]
Length = 366
Score = 87.8 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/339 (11%), Positives = 114/339 (33%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + Q + Q +FI K ++++
Sbjct: 121 GPWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGSTFSNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + + ++ + ++ +
Sbjct: 181 GNARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + ++ ++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVTLDPNDSEQMSLDTLWHSDKPDFRSELHWRLTLVFSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + + ++S G G + P A
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSSGSKGRIDPAIAMWA 333
>gi|124267132|ref|YP_001021136.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
gi|124259907|gb|ABM94901.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
Length = 363
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/353 (11%), Positives = 116/353 (32%), Gaps = 8/353 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ ++ L+ M +V + L Q + + A+L + I+
Sbjct: 7 LRRDLARSFGATLVVIMTIVITMFLIRTLGQAAG-GSVAAQDVALLLGYVALENLPTILS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + + R SE+VI A G+ + + + P + + L + L+ + G
Sbjct: 66 LSLFIAVVTTLTRMYRDSEMVIWFASGVGLLRFVPPVLRLTAPLLLLVALLALFVWPWGN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +L +++ D + + ++ ++ FI D ++
Sbjct: 126 RQIAELKDRYQRRSDVARVAPGQFQSSADGKRTFFIERDTGEGNIARNVFVLERKPDSES 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
R V L+ ++ D ++ + + S
Sbjct: 186 VTSARTGRIEMDGDQRFVVLESGQRNDINLATGERKLAQF------DSYRVLAGEAVSSG 239
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ K + + R + + I + + + + L+ ++ R +
Sbjct: 240 ADNLPPKARSTWDLLTQPSNRHFGELAWRIGLAVGGINLVLLGIGLAGGNPRRAG-SWNL 298
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + + + + ++ + +++ SG L L+ + L++ +L +E G
Sbjct: 299 LFALLAFVVYFNLLNLSQAWVASGKLEIGIVLLLIHGGSFVLAVSLLWWRERG 351
>gi|152973138|ref|YP_001338284.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238892750|ref|YP_002917484.1| putative transport system transmembrane component [Klebsiella
pneumoniae NTUH-K2044]
gi|262045294|ref|ZP_06018319.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|290512174|ref|ZP_06551541.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
gi|330016471|ref|ZP_08308444.1| lipopolysaccharide export system permease protein LptF [Klebsiella
sp. MS 92-3]
gi|150957987|gb|ABR80017.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545066|dbj|BAH61417.1| putative transport system transmembrane component [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259037350|gb|EEW38596.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|289775169|gb|EFD83170.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
gi|328528832|gb|EGF55775.1| lipopolysaccharide export system permease protein LptF [Klebsiella
sp. MS 92-3]
Length = 365
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q S+ +FI + + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ +L+ + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + H RA + ++ + + M L+ +S+ R +
Sbjct: 236 HQAVSADPDDTEQMDMRTLWKTHTDRARAELHWRFTLVATVFIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + P +L +L++L+
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALAVLL 345
>gi|212710411|ref|ZP_03318539.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
30120]
gi|212686831|gb|EEB46359.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
30120]
Length = 365
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F +I N + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLLLIFFSQKSIDILG-AAVQGNIPSNLVLPLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ L+ +V + L + V I +
Sbjct: 61 QLILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLAALTALVAVANITWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ K N + + ++IG K +++
Sbjct: 121 LPWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDGNFVLYIGEVKGNDFKNVFLAQLRTA 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + +Y + ++ + +
Sbjct: 181 NEQRPSVVVADSGYMKEDEYGRQMVVLDQGTRYEGTAMLRDFRITDFVNYQAVVDHKATD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + + N +F++ + I +V M L+ +S R +
Sbjct: 241 VSTDKVEQ-----KTMMQLWNEDNPEVNAEFHWRLTIVFSVVVMALMVVPLSEVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + + + +++ G + P A + + L++++
Sbjct: 296 VLSMIP-AMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLLLAVIL 345
>gi|325282730|ref|YP_004255271.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314539|gb|ADY25654.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 387
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/348 (14%), Positives = 117/348 (33%), Gaps = 13/348 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y L + L ++L+ + L ++ + S + A L A VP + +
Sbjct: 29 YVLSEILPLLVAALSALIVLLMLKGLEDVLAPLLAK-GASPALVAQLLALNVPEAMAFGL 87
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ L+ SE+ + + GI L P ++ + L+ + + + + T
Sbjct: 88 PLALMFAALLGLSRLSGDSEIKAALSGGIPGTTLFRPVLLLAALVTLLSFGINEVLVTRA 147
Query: 128 EKIGIDLIQQWKDNGDKQ----KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +Q + + ++ + + I +G+ T
Sbjct: 148 KVQAQSVQRQIVLDNPRVIGLAQTAGGGLVLRDALDRAISVGSVGEDGTLRNLRIVTMQP 207
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE- 242
++I ++ L ++ ++L+ Y + + Q +
Sbjct: 208 GLPPREVITAREGVLQE-GSNVLELRGGQRVSYQGARPVTVLNFETGQLPVQDVQASFDG 266
Query: 243 ----QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ S I T Y PL +A+ A S++L
Sbjct: 267 GSGLDPFYLPLGTLKERTDGYRDSGIRSPGDF-TALYRKFAQPLSALALAFFAVSLALYT 325
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
RS + + + + F Y ++ + G++G L AA P ++
Sbjct: 326 FRSG-LNLGLVWALLLSFAYYATWSVFRVMGENGALPAPVAAFGPDVI 372
>gi|146308541|ref|YP_001189006.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
gi|145576742|gb|ABP86274.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
Length = 372
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/349 (11%), Positives = 110/349 (31%), Gaps = 17/349 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GALDPGVLFLIMGYRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + ++++ + + +
Sbjct: 61 QLILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA--------KKILPENHI 175
A G ++ + + + + + + + + +
Sbjct: 121 APQGVASVARILNEQDALTELDTLVPGRFQSMKDGSRVTYSQELSADRSELRGVFMSEKR 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ S + ++ + + L+ Y D + +
Sbjct: 181 FSSDGSSERGITVLLAESGRQEIQADGSRYLILENGYRYDGEPGEADYRVIQYDTYGVLL 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + + R + + R + + + + IPL++ +TL+A +S
Sbjct: 241 PKPEVAIEASEREAMPTRE-------LFGSDDPRVQAELQWRLSIPLLVFVVTLLAVPLS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + IF ++ + G L P
Sbjct: 294 KVNPRQGR-FLKLLPAIFLYMAYLGLLIAARGALDKGRLPPALGLWWVH 341
>gi|320451334|ref|YP_004203430.1| hypothetical protein TSC_c22790 [Thermus scotoductus SA-01]
gi|320151503|gb|ADW22881.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
Length = 336
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 109/354 (30%), Gaps = 20/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L +L + L DL + + + A L R+P +
Sbjct: 2 LGRYVLKEVLVPYLVGVLLFVAL-LTFDLLSSLSGVLLSRGAGVEAIAKLILYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ W LL P + ++L+ F ++ + +
Sbjct: 61 LALPLGLVFAILVGLARLIRQSELKAAYAAGVPPWALLKPLALLALLVSFFNLVNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + + + + + +
Sbjct: 121 PKALEAYDQHLARLLYGEGGLSGVLRKQLYAAEGLGVYYAEEVRPEVGQNRLYGIRVVDE 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ D + L+ + + + + +
Sbjct: 181 RGRIYSGQEGVWDKEGWHFRGYVLEGGKPKPFA------GTLPFPTQFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S + E+ ++ + Y + L + L+AA++ L F +
Sbjct: 235 DSTTLRELWERSQVEPSA--------RFALYRRLADALGGFFLGLVAAALGLSFREAAWA 286
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + F Y + T+ + + P+ A +P +L + + +
Sbjct: 287 FLSI---VLLIFGYYVLWTLSAQLAR-YDVNPLLA-FLPNAFFAALGLYLTWRL 335
>gi|330994316|ref|ZP_08318244.1| putative permease [Gluconacetobacter sp. SXCC-1]
gi|329758783|gb|EGG75299.1| putative permease [Gluconacetobacter sp. SXCC-1]
Length = 410
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/364 (10%), Positives = 105/364 (28%), Gaps = 9/364 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P + RY + + L M + + L + N + + S+ L + +P
Sbjct: 16 PTTMDRYLLRQVVPPFSIALGVVMAALLLERLLVLFNLLAANGS-SMKTFFALLSDLIPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V ++ E+ A G+SI+++ PFV+ + G +
Sbjct: 75 YLGLALPAAMCVSVFSVIRRMSANHEIDALMASGVSIFRICQPFVLTGAIFGFLAFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW-------MQISNPQQDIFIGAKKILPENH 174
I G + + N + +
Sbjct: 135 FIQPYARYDYRSAFYFASHAGWTPHLQSKMFALSDDIVLTAENVDHAGSRMWNVFIRDGT 194
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
I+ K +++ + D + + + + ++ K+
Sbjct: 195 DKAHVRFISAQKGYLFNPADGSNIRLDLVDGTVITDSQDKPPTITSFSRTTRMISTKGKL 254
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D R + + + F + + + ++A ++
Sbjct: 255 DTEAYRKRGETERELTVPELYYGIRYGNPTISHSYMIAELNFRLARTAAIPFIPILACAL 314
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + I + + SF + + P+ +P ++ + + +
Sbjct: 315 AGVRKRQKNNPGLAIAAITL-VGFDHTLQMGMSFVANMHMSPLLVIWLPTLVFSLICVGV 373
Query: 355 LLQK 358
L+++
Sbjct: 374 LIRQ 377
>gi|259907066|ref|YP_002647422.1| Putative permease [Erwinia pyrifoliae Ep1/96]
gi|224962688|emb|CAX54143.1| Putative permease [Erwinia pyrifoliae Ep1/96]
gi|283476866|emb|CAY72714.1| Inner membrane protein yjgP [Erwinia pyrifoliae DSM 12163]
Length = 366
Score = 87.4 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 114/339 (33%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + Q + Q +FI K ++++
Sbjct: 121 GPWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGNTFSNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + + ++ + ++ +
Sbjct: 181 GNARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + ++ ++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVTLDPNDSEQMSLDTLWHSDKPDFRSELHWRLTLVFSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + + M+S G G + P A
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSMRSSGSKGRIDPAIAMWA 333
>gi|328544011|ref|YP_004304120.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
gi|326413755|gb|ADZ70818.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
Length = 395
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/363 (12%), Positives = 117/363 (32%), Gaps = 14/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + + L +V+ + + +I + + +P
Sbjct: 1 MKTLERYIVRRAGIAFVMTLAAMTGVVWATQALRQLDLVTSK-GQTIVQFVGITMLAMPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + PF ++ I+V L+ SEL++ A G S + +L P V+ S + + + +
Sbjct: 60 LVLVVAPFALMIALILVLNALSSDSELIVINASGGSRFLVLRPVVLFSAAIMLLSATLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G D I + + + ++ + + + + +
Sbjct: 120 YVAPLGLAQLRDEIARVRVDLVANIVRPGRFITVEDGLTFHIRNRRGDGSLDGLLLHDRR 179
Query: 182 ITIDKKNK------IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I+ D L ++ + ++ + + + + L + +
Sbjct: 180 DPQTVFTYQADVGRIVEAADRTLLLMQDGTIQRRPKTDGDISIVRFQSYAFDL-SALIPE 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ RAE + + PL +A LI +
Sbjct: 239 TSTPIYKASERPTLALLLGTHQDDYARQNADRLRAEL--HDRLSQPLYPLAFGLIVFAFL 296
Query: 296 --LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+R + + + + + L T + + SG + ++ I +++
Sbjct: 297 GQARTTRQGR-GMAMLGALVACIGLRTAGFGVSTL-ISGQASLTLGYYLVPLIGIGVALW 354
Query: 354 ILL 356
+L
Sbjct: 355 TIL 357
>gi|325278208|ref|ZP_08143701.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096648|gb|EGB95001.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 241
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 8/222 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + L L L + L + + + + Y++ + P
Sbjct: 1 MAK-LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSDT--YTVMQAGYYVLLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+
Sbjct: 58 RRLYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + G+ Q S W + I + N + T
Sbjct: 118 EYVAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEFVHI-----NAVQPNGLLLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
D + KI A A +D L V + +
Sbjct: 173 RYRFDSERKIQTSSFARRAQYTDDHWLLSDVSTTFFRGDHTE 214
>gi|329114704|ref|ZP_08243462.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
gi|326695970|gb|EGE47653.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
Length = 358
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 126/361 (34%), Gaps = 7/361 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP +L RY L ++ + L+ ++ L E + + + + AA R
Sbjct: 1 MPRHVLLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQR-HLGVQGILSFAAMRA 59
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P ++ +P L+ +++ + SE+ I RA G+S + L + ++++G V++
Sbjct: 60 PFLLAGALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVL 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + L W ++ W N I + +
Sbjct: 120 DDQVTP---RSEQALAAWWNRTDPHPENGHAFWFHDGNRIAHIGYTSDGGNMLAKVDIYI 176
Query: 180 TSITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + D + VE + + + + + F
Sbjct: 177 RDTNGRLQQILHAKSADYTHTRGWLLHNVDSITVEGEKTTRLPSVQNMSWDTSLHPWEFI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + S I+ + + E + P L+ + LIA
Sbjct: 237 RLSAENPPLSSTTILGMLQ-GRLPSHTSPGFLEAGLLERFLRPASLLVLLLIALPTIYIP 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + + + G + + ++++ G +G+L P A + +I+ +I +LL+
Sbjct: 296 PRTGTRSWVPVWCLGCGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGAITVLLRN 355
Query: 359 E 359
E
Sbjct: 356 E 356
>gi|153820564|ref|ZP_01973231.1| conserved permease [Vibrio cholerae NCTC 8457]
gi|126508893|gb|EAZ71487.1| conserved permease [Vibrio cholerae NCTC 8457]
Length = 236
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 6/238 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N I + L ++
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNL----- 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K + + N++ +K V + + L+ + Q
Sbjct: 175 WRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVMTSRSVKNRCLSTAGEPPLLQ 232
>gi|260363481|ref|ZP_05776317.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|308112551|gb|EFO50091.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
Length = 348
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/332 (9%), Positives = 95/332 (28%), Gaps = 7/332 (2%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
++ + + + + +P + ++P + ++ F
Sbjct: 1 FFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMGLLMLPLSLYIGILITFG 59
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L SE+V+ A GI L+ + +++ ++ + L +Q
Sbjct: 60 RLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLSPWSQDRVEHLYEQVAA 119
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
+ + +FI K ++++ ++ ++
Sbjct: 120 ENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRDSVLPSVMFSSSGEVKE 179
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
+ + + + +Y +P + + R +
Sbjct: 180 LSDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQKGRDWEAYPT-----A 234
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ A+ + + I + + + +T++ +S R + + I +
Sbjct: 235 DLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGRFAK-MGPAILIYLAYFL 293
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSI 352
I+ KS + G + + + ++I
Sbjct: 294 AISATKSALEDGAIPAAIGMWPINAMLLIVAI 325
>gi|224418390|ref|ZP_03656396.1| permease [Helicobacter canadensis MIT 98-5491]
gi|253827708|ref|ZP_04870593.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313141921|ref|ZP_07804114.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511114|gb|EES89773.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130952|gb|EFR48569.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 355
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 115/355 (32%), Gaps = 5/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY YLK + +IDL + +++ + N +L
Sbjct: 3 LFSRYIISLYLKYFFILFVSLECFFVLIDLVKYLDELPQSANL----IVLLIFYDFVYAS 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P ++ IV+ ++ R S+ A+G S ++ P + S L+ + VL+
Sbjct: 59 NFILPLSLVLAQIVLSISMLRNSQFTAFLALGYSKARIFLPIFIVSFLITLLFVLLNATP 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ +I++ K I ++ + + + + I
Sbjct: 119 FAYAKERVDLIIERGYLGSYKNDLFIKYNENYIYFEKIFPLLKMAENVKVYEVFNKQVIK 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I + K +D + + ++ + K E+
Sbjct: 179 IIEAPKATFIEDKWKLEDARITTLDSNLEVGKNPLKIEEQKTYETLEGFKPKILDNIYEK 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S S + ++ + K + + + + + M +A + +R
Sbjct: 239 QGSVSIVDALEAIWLLKKQGVNTQKLRSSLYALIFFPFFAPLVMVCLA-RFTPNSNRYAN 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I I +++ + SG L P + ++P+ + +S+ + L+
Sbjct: 298 IGGITLGMILGVLIVWGVFFSFSRLSMSGFLPPEVSIILPIGILGLVSLWLFLRL 352
>gi|189220202|ref|YP_001940842.1| permease [Methylacidiphilum infernorum V4]
gi|189187060|gb|ACD84245.1| Predicted permease [Methylacidiphilum infernorum V4]
Length = 405
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/369 (12%), Positives = 123/369 (33%), Gaps = 14/369 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++++ F K +L + + + + + + L + +P
Sbjct: 34 MRTIYKFLFLELFKNSLITTSILTFFLVIANAFRDLSDLLVNNEVPLWISVKLLVSLIPF 93
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P+ LV I++F +++ EL ++ GIS+ ++ P + ++L + + +
Sbjct: 94 VLTFTLPWGLLVAVILLFGKMSQDRELTALKSAGISLGAIMAPVIWFALLYSVLSFAINA 153
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT- 180
I ++ + + + + E+ +
Sbjct: 154 YIGPKSRHAFKEIFSDVMLHNPLSFFKSNKTIDQFDGFRLYATNRIGARLEDVYIWETDA 213
Query: 181 -------SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPI 232
+ + + L ++N + + + V + Q ++ + +T L I
Sbjct: 214 DLRPLRSIRASEAEIEPDLAHQRILLTLWNARQEERNVSDPQNVKLVMPGSRATQLPYEI 273
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF----HNYRAETQFYFLIVIPLMLVAMT 288
+ S + + +++F + T+F + L
Sbjct: 274 SLAQLFDRLTVRKSIGLSTLDEIGRSIVAADLFGFTSNPTPVLTEFQKRLAFSLSCFTFV 333
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ A ++++ R I VA + Y I+ + ++ L P +P I+
Sbjct: 334 LVGAPLAIQVQRKE-TSIGVALSLLIVLSYYVIVLLAEALKAKTNLFPELIIWLPNIIFQ 392
Query: 349 SLSILILLQ 357
SL ++ +
Sbjct: 393 SLGFWLIWR 401
>gi|225164329|ref|ZP_03726596.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
gi|224801063|gb|EEG19392.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
Length = 379
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/376 (11%), Positives = 107/376 (28%), Gaps = 20/376 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL R+ F L T +L ++ V + + Q ++ A L VP
Sbjct: 1 MKILQRHIFLSVLTTCFAAVLLFTFVLIVGNALKDLLQFALAGQITMPDMAKLLLLLVPY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L ++V ++ SE+ RA G+ I + P ++ ++ + ++V
Sbjct: 61 VVAFALPIGVLTGVLLVLGRMSGNSEITAMRAAGLGIAFVTRPILLLAVAGSVICLIVNY 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-----------------PQQDIFI 164
K +++ + + +++ ++
Sbjct: 121 YYMPMTRKPYKNMVPNIVRSDPLKLITARTFLREFPNAVVYVDEKDGTVLRDLWVWELDR 180
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + + + K + R+ +D KVV +
Sbjct: 181 DKRVVRAHHAQEGELAYNEESHKLVLKVREGTTELRDRDDPEAFNKVVTVSTFGSAEFEF 240
Query: 225 STT--LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
S + + + ++ + + L
Sbjct: 241 SLSNLFGRITTRQKLDWMTLEELKAQREQLTAAPDADTPEGQMRRMQVDVTLNKKAANAL 300
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++A LI + ++ SR + + + Y + + P +
Sbjct: 301 AVLAFALIGVPLGIKVSRRETSA-NLGMALLLILIYYMLSGVAGWLEAYPRWRPDLIVWV 359
Query: 343 PVILTISLSILILLQK 358
P +L +L +
Sbjct: 360 PPLLFAGFGAWLLSRL 375
>gi|288937433|ref|YP_003441492.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|288892142|gb|ADC60460.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
Length = 365
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q S+ +FI + + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ +L+ + + ++ + ++ + +
Sbjct: 181 GNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVT 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ H RA + ++ + + M L+ +S+ R +
Sbjct: 241 SDPDDTEQM-----DMRTLWQTHTDRARAELHWRFTLVATVFIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + P +L +L++L+
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALAVLL 345
>gi|302338546|ref|YP_003803752.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
gi|301635731|gb|ADK81158.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
Length = 360
Score = 87.1 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/357 (12%), Positives = 117/357 (32%), Gaps = 5/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + + L+ +V +++L + + + +++ + P
Sbjct: 1 MKKLDLMVLRAFFHILFLSLMFFSFVVVLVELFSNLWRYLQ-NDAALAEILFTSLLYYPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P L + +EL+ + G+S+ + P +V S LL + +
Sbjct: 60 AITLALPPSILFAIAFTLGSYQANNELLALFSSGVSLLRFTVPIIVLSALLSVGSYFFQE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ---ISNPQQDIFIGAKKILPENHIWED 178
+ L + ++ + + + D + + L +
Sbjct: 120 YLVIPKSAQKQILTDRLSGRSSVGNNNNVVILSGEGRFLYKIDYYNAKNRSLTGVSVLIR 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K+ + + + +V+L +V+ + + F+
Sbjct: 180 DSQGNFTKRIESEWAQCDESGEWVFHRVRLFEVLSDKRVTEQFFLTYRNPELSESPSSFR 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
K E + KS ++ T +Y L + + L++ S+S +
Sbjct: 240 KQIGSVNELQRKEAQVWIERLRKSGSERYHKELTAYYERFSFSLTPLIVALLSISLS-GY 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ N + + + + Y ++ F + GI+ P+ A +L + +S+ +L
Sbjct: 299 FKKNILLMSLLSSVIVSVLYYVSEMVLVLFAQLGIIRPITGAWTSALLFLCISLFLL 355
>gi|237807325|ref|YP_002891765.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
gi|237499586|gb|ACQ92179.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
Length = 367
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 54/347 (15%), Positives = 119/347 (34%), Gaps = 6/347 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY FK LKT L LL +++ I + + + S + +P +
Sbjct: 2 IVFRYIFKETLKTQLSILLILLLIFTSQQFIRILARAAD-GSIPSSLIGQMMLLNIPYMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L SE+ + RAIG+ ++ +V ++L + + +
Sbjct: 61 LLLLPISLFIAILFAHGRLYADSEMTVLRAIGVGPSYIMRISLVLALLTTVVATVNTMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L+ K + + ++ + + + + + +
Sbjct: 121 APMAREKQSQLLDAAKADPLSIPLESGRFLSL--DGGHLTAYVEDVQDSGRSLQRIFLLQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
A + ND V R ST +I + + +
Sbjct: 179 RSPDPAEAAIIVAASGHLTNDAQGTPWVTLANGKRYAGTPPSTQFSIANFAEYKAQLQRK 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + S + ++ AE + +V+PL + MTLIA +++ R +
Sbjct: 239 DIEPSTPKARALPSSALYNSTDKKQIAEW--QWRVVLPLSIPLMTLIAVPLAVVNPRQGR 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + +++ +S + G L + I +L L
Sbjct: 297 YAK-LLPAVMLYLSYFLLLSAGQSAIERGQLPEMPGLYIIPVLFTLL 342
>gi|258542690|ref|YP_003188123.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633768|dbj|BAH99743.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636827|dbj|BAI02796.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639880|dbj|BAI05842.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642936|dbj|BAI08891.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645991|dbj|BAI11939.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256649044|dbj|BAI14985.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256652031|dbj|BAI17965.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655088|dbj|BAI21015.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 364
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 126/361 (34%), Gaps = 7/361 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP +L RY L ++ + L+ ++ L E + + + I AA R
Sbjct: 7 MPRHVLLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQR-HLGIQGILSFAAMRA 65
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P ++ +P L+ +++ + SE+ I RA G+S + L + ++++G V++
Sbjct: 66 PFLLAGALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVL 125
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + L W ++ W N I + +
Sbjct: 126 DDQVTP---RSEQALAAWWNRTDPHPENGHAFWFHDGNRIAHIGYTSDGGNMLTKVDIYI 182
Query: 180 TSITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + + D + VE + + + F
Sbjct: 183 RDASGRLQQILHAKSADYTHTRGWLLHNVDSITVEGEKTTRLPSVQDMGWDTSLHPWEFI 242
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + S I+ + + E + P L+ + LIA
Sbjct: 243 RLSAENPPLSSTTILGMLR-GRLPSHTSPGFLEAGLLERFLRPASLLVLLLIALPTIYIP 301
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + + + SG + + ++++ G +G+L P A + +I+ +I +LL+
Sbjct: 302 PRTGTRSWVPVWCLGSGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGAITVLLRN 361
Query: 359 E 359
E
Sbjct: 362 E 362
>gi|154253775|ref|YP_001414599.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
gi|154157725|gb|ABS64942.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
Length = 388
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 103/361 (28%), Gaps = 9/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY F L + + ++++ + + + ++ L +P
Sbjct: 1 MLKSLSRYLFFQTLGPFVVASVVLSGIIWLTQALRMLDVLI-TQGQTLLTFFELTVLALP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P + L SE+V+ A G+S W + P + ++ + +
Sbjct: 60 STLMIVLPISLFCAVLYSLHKLISDSEIVVMFAAGVSRWVVALPLLAIAMGTSVIILAFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA +G + + + + + + + +
Sbjct: 120 IYIAPAGMRELKSRLVEIRSDVATAMIREGTFSNPATGLTVFVRERAADGTTYGVLVHDG 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I + V ++ +T L ++
Sbjct: 180 RIPSAPVTYMAETGSLVRGPNGPLLVMFNGNIQRASRSGTETSAATFLYFDKYTYDLSQY 239
Query: 241 SEQFASRSFYEIIKKMSFS------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + S+ + + + + + +V V +TLI +
Sbjct: 240 MEDEPTLSYEGRERYFHELVNPASDDLYGQQNRDKLLADAHERLVEGFYPVMLTLIGLAA 299
Query: 295 SLE--FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
L F+R + + + + + G + L P+ L + I L++
Sbjct: 300 LLPAPFNRRGYASRMATAAAMALTVRILGFALSNAVGNNLALAPLMYILPIAVCGICLAV 359
Query: 353 L 353
+
Sbjct: 360 I 360
>gi|37528301|ref|NP_931646.1| hypothetical protein plu4480 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787739|emb|CAE16852.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 366
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L EI N + L VP +
Sbjct: 2 IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILG-AAVEGNVPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L + + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + + ++IG +++
Sbjct: 121 MPWSSKYQEQVVADAKANPSLAAIMEGRFKPSEDGNLVLYIGNVHGNKFENVFLAQLRPV 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + K + +Y + ++ +
Sbjct: 181 DNQRPSVVISNGGHMVERPDGKQVVVLNHGTRYEGTAMLRDFRITEFRDYQAIIGHQTSI 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + ++ + +F++ + + L ++ M ++ +S+ R +
Sbjct: 241 VDNNKVEQ-----KSIIQLWQDNDKDSRAEFHWRLTLVLSVLIMAMMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G G L P+ + + L++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNGSKGKLDPMIWMWLTNGTYLMLALVL 345
>gi|325971215|ref|YP_004247406.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
gi|324026453|gb|ADY13212.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
Length = 361
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/360 (12%), Positives = 112/360 (31%), Gaps = 13/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L+ +++ +DL + S A L P
Sbjct: 1 MKVIDRYIIRSIASVAFVTLMLCTLMLLSVDLFANLDSYLTRK-VSYLMIAKLTLLYTPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + L L +EL+ G+S +++ P ++ + L F
Sbjct: 60 AVLFALGPALLFSASFFLSQLQANNELICLMGSGLSYRRIVIPILMFGLALSTFQFGFSE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + I + +P+ + A++
Sbjct: 120 YVHIPLSKEREVQEDSLFGLRSTYDNRNI---TLRDPEGAYVVHARQYSDREKRLAQVML 176
Query: 182 ITIDKKNKIIHRKD--ADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIK 233
+ ID+K + R D +L++ Q ++ + ++
Sbjct: 177 VLIDEKGSLKSRIDAPWAYWEEEKGIWRLEQARNQQVDSSLLVLHQTEEQVLYVDSFTLQ 236
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
F+ S + + + + + T F ++ L + M IA +
Sbjct: 237 PSFFRNVSNDIKTMELRTAYHYLQRIAELDPNRYPQLATDFAKRLLDSLNPLVMLFIACA 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S ++ ++ + + + Y + + K ++ P+ IP+I+ + +++
Sbjct: 297 ISYKYKKNV-LLFSIITSLGIAVIYYVVQMVTLIMAKQAVIGPLWGMAIPMIVIVCIALA 355
>gi|251792100|ref|YP_003006820.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Aggregatibacter aphrophilus NJ8700]
gi|247533487|gb|ACS96733.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter aphrophilus NJ8700]
Length = 367
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 119/356 (33%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GQVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA GI L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTLGRLYAESEITVMRACGIGQRILVKIVLILSLFTAAVAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++++ K N + +M +N +FI + N+++ T
Sbjct: 121 TPWAIHKQTEIVEEAKANPNMGALSAGQFMTANNSDFVLFIDNIQDNQINNVYVFQTQPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K +I + +L + N L + + +
Sbjct: 181 GQSKPSVIVAEKGELKALPNGDQILNLQNSDRFEGTAILPDFRITHFDEYQAYLGHKTVA 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ ++ + +T+F++ + + L + M L+A +S
Sbjct: 241 DDADEAGEMDIMQLWN----------ANAPAMKTEFHWRLTLILAVPIMALLAVPLSRVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + V + + + + + +KS G +G L + I +L+I +
Sbjct: 291 PRQGRFAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDASLFMPLVNIAFFALAIFL 345
>gi|220935307|ref|YP_002514206.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219996617|gb|ACL73219.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 367
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 101/348 (29%), Gaps = 16/348 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL RY + L T L ++++ + + + E + A
Sbjct: 3 PSILTRYLVREVLLTQAAVTLVLLLIIVGGTVARMLREAAE-GRIPADVLLPMVALGSVR 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + ++ L + SE+ +A G+ QL ++ L + +++
Sbjct: 62 GLILLLPVSLFLALMLSLGRLYKDSEMAAMKACGVGPEQLYRAIAWMTVPLLVMLTVLVF 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + D + + Q FI S
Sbjct: 122 WGSPLASQGIDQIRIDAEQRSDLVGIAPGRFTESRATGQVFFIEGLAGDGNTMRGVFIRS 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK-- 239
+ + R+ + L Y+Y P + L
Sbjct: 182 RGPEGDEVVTARRGETRVDPLTGQRYLVLHDGYRYRGAPGSQEFHILAFETHGLRVPDPT 241
Query: 240 ---FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S S E+ + + S + ++ I +P+ +V + +A +S
Sbjct: 242 GSTRRGKVDSLSTAELWQSTNLS----------HRAELHWRIAMPVSMVLLAALALPLSH 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + + I + + + KS+ SG
Sbjct: 292 TSNPRSGRFGKLTAAIGVYILYANFLILSKSWFASGQTPAWLGMWWVH 339
>gi|114326913|ref|YP_744070.1| permease [Granulibacter bethesdensis CGDNIH1]
gi|114315087|gb|ABI61147.1| permease [Granulibacter bethesdensis CGDNIH1]
Length = 404
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/347 (10%), Positives = 103/347 (29%), Gaps = 11/347 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ Y + ++ + L L + + + +V +
Sbjct: 38 PLIIQTYLIREIMRPFVPVLAVLAGLFGSFSAAGFLSDAVN-GLLPTGSIIQMVSLKVLI 96
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP + ++ F LN E+ A+ + ++ + + + + +
Sbjct: 97 ALEVLIPISLYLSVLLAFGRLNSDQEITAMAALRVQPERIWRIVLSLCLAMAVVVGALSL 156
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L Q + + + + + IF ++ E
Sbjct: 157 FARPWAYARLHALSDQAHVSLNTDAMEAGTFYIGPKGNRVIFFTHRQGPEEPASGVFVQL 216
Query: 182 ITIDKKNKIIHRKDADLAIIYND---KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ D+ I R+ L D ++ L Y++ R + +D
Sbjct: 217 WSPDRMEIISARQAMTLRPASPDAKSQILLSDAHIYRFNRSGEGNDEVLDAAETVLDIQP 276
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ A + + + + + + P+ + + L+ +S
Sbjct: 277 NKADAAAYSAVATASRLL------LGSPSPADIAELQWRFSTPVSTLLLGLLGIPMSRSK 330
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R ++ I + F Y + T +++ + G++ +
Sbjct: 331 PRQSRYA-RFGAAILAYFSYYLLCTSARTWVQHGVVPAIPGIWWVPA 376
>gi|239809484|gb|ACS26210.1| unknown [uncultured bacterium]
Length = 359
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/347 (10%), Positives = 107/347 (30%), Gaps = 17/347 (4%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
++++ + Q + ++ R+P +Q I+P + ++
Sbjct: 3 AVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGVLLLIMGFRLPGFLQLILPLGLFLGILLA 61
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
+ L SE+ + A G+S +LL + + L+ + + +A G ++ Q
Sbjct: 62 YGRLYLESEMTVLSATGMSQRRLLVYSLAPAALVAVVVGWLSLGLAPQGIAEVDRILNQQ 121
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKK--------ILPENHIWEDFTSITIDKKNKI 190
+ + + + + + T +
Sbjct: 122 DSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNVSRQTGKESGLSVLV 181
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
++ + + L+ Y D + + + + S + + R
Sbjct: 182 AESGRQEVQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLPKPEVSMELSEREAL 241
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ + N R T+ + +PL++ +T++A ++ R + + +
Sbjct: 242 PTRELL-------GSDNIRHRTELQWRFSLPLLVFVVTVLAVPLAKVNPRQGR-FLKLLP 293
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I ++ ++ G + L +++ +L+L
Sbjct: 294 AILLYMTYLALLIAVRGALDKGRIPMALGLWWVHGLFLAIGLLMLYW 340
>gi|115379870|ref|ZP_01466933.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
gi|115363129|gb|EAU62301.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
Length = 342
Score = 86.7 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/322 (12%), Positives = 101/322 (31%), Gaps = 12/322 (3%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+++ L P + + +P L+ ++ L+ EL +A+GIS QLL
Sbjct: 15 VTLTDIGRLILYLTPHFLVKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGP 74
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ +LL L+ G +L+ + + + +
Sbjct: 75 MAIGLLLAGLMALLAFTAQPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLSDLTLYAER 134
Query: 166 AKKIL-PENHIWEDFTSITIDKKNKIIHRKDADLAIIYN------DKVKLKKVVEYQYGR 218
+ H+ + R + ++ ++ +
Sbjct: 135 VSREGGEWTHVLLHDDREPSSPLLVLAQRGRVSMREGDEALRLVLEEGEVHRATRSTADY 194
Query: 219 IPIDKNSTTLNIP---IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+ +++ +F Q S E+I+ + KS + +
Sbjct: 195 SLLRFEQGEISVGLGGSMNRKSNRFRSQKEEMSPGELIQAAEEAEKSGG-NPRPFLMAIH 253
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + ++ L+ +++ ++ + + + Y + + ++ G L
Sbjct: 254 MRLGNAVAPLSFALLGTPLAIGRKQAGR-AWGYLLTLSGYVLFYVLSRVFETLGNQEKLP 312
Query: 336 PVAAALIPVILTISLSILILLQ 357
V AA +P IL L ++ + +
Sbjct: 313 MVLAAQLPNILFSVLGVVAMWR 334
>gi|269121332|ref|YP_003309509.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
gi|268615210|gb|ACZ09578.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
Length = 360
Score = 86.7 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 136/364 (37%), Gaps = 10/364 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY Y+K + +L +++ + + + + E +++ V +P
Sbjct: 1 MNK-LDRYILINYIKGFILGMLMFLLIFLLAESINVTGWIME-DKFTLKDSMVYIKYGLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ + + E+ + GIS + + ++ S L+ +FTV +
Sbjct: 59 EILVNTAPLGILLGSLLSISKMAQRLEITAVKTAGISFRRFVLFPILFSALVSVFTVYIS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I K+ ++ + D+ K + + I ++ + A + ++ E
Sbjct: 119 INILPEANKMKREMKDRKLKEDDQTKKNEKKDVYI-KLDKNRMLYASYVNKNKNLMEGIM 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDG 236
+ + I + YN + K+ + + + + L+ + +
Sbjct: 178 IVDFHENLNGIKSIYVSPSATYNSQSKIWDFGSLKELDVEKNMENEILSSEFQLRATPNE 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+ +K + ++ + ++ Y + M+ I S+
Sbjct: 238 ILEDQVKAKELTLKELREKSVYYSRVGA-NTNDLFSELYNRLSFTFASFIMSFIGLSLGS 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG-KSGILLPVAAALIPVILTISLSILIL 355
++ R I + + G+ Y I T+++S G + A + I+ +L + +
Sbjct: 297 KYVR-GGAAINIGLSVLIGYSYYGISTMLRSMGPVVSVFPLYITAWLTNIVFFALGVYLF 355
Query: 356 LQKE 359
+ E
Sbjct: 356 RKAE 359
>gi|52425604|ref|YP_088741.1| hypothetical protein MS1549 [Mannheimia succiniciproducens MBEL55E]
gi|52307656|gb|AAU38156.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 366
Score = 86.7 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + N L +P +
Sbjct: 2 ILTRYLTKEVFKSQVAILFILLLIFFSQQLVRVLGSAAN-GNVPADLVLSLLGLGMPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ + S+L + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEISVMRACGVGQRILVKVALGLSVLTAALAAYNVLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + N + +M ++ +FI K ++I+ T
Sbjct: 121 SPWAIQKQGQIVEDARANPNMSALSAGQFMTSNDSDFVLFIDNIKDNKISNIYLFQTKEK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K +I ++ +L + N L + + N
Sbjct: 181 GNSKPSVIVAENGELQSLPNGDQILSLQNSQRVEGSAALPDFRITNFTEYQAYLG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ E + A+ + + I + L + M L+A +S R +
Sbjct: 236 HRNVDSDENETTELPLAELLALKTPAAKAELNWRISLILAVPLMALLAVPLSKVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + +KS G +G L + + + L I++
Sbjct: 296 FAK-ILPALLLYLIYFLLQSSLKSAGGAGKLDAGLLMPLVNLFFLLLGIML 345
>gi|148556806|ref|YP_001264388.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
gi|148501996|gb|ABQ70250.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
Length = 400
Score = 86.7 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 113/357 (31%), Gaps = 11/357 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L+ A +L+ + + + + + +S + A +P +
Sbjct: 8 DRYVARLIATPLLATLVIAAMLLTLDKMLRLFDFVVSEGG-PVSVVWRMLANLIPEYMSL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ ++ F L +SEL + RA+G+S +LL ++ L + + ++ I
Sbjct: 67 GIPIGLMLGCLLAFRKLALSSELDVFRAVGMSYGRLLRVPYYYAVALALLNLAIVGFIQP 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + ++ +++ E T
Sbjct: 127 YSRYAYEGLRFELRSGALGASIKVGEFTKLGKRMTIRVESSREGGRELSGIFVMTESKDG 186
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--------MDGF 237
K + LA D + L+ P K L M+ F
Sbjct: 187 KSLAVTAEHGQFLATDDPDTIILRLQKGVLVHDAPQFKEPRVLQFVGHDLPIDLPKMEAF 246
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + E++ + + L+ + + + + A
Sbjct: 247 RQRGGRDLEMTMPELVVTAHQATTPAKQRAQFRSEFHFRLVE--VATMFLLPMLALALAV 304
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + V I + I S G + P+ A +P + +L +
Sbjct: 305 PPKRSSSALGVFLSIVMIVTQHKINEYAASVAALGRIDPLIALWVPFLAFAALVWWM 361
>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 379
Score = 86.3 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 117/359 (32%), Gaps = 15/359 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + + + S+ ++A +P +++
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIG-DGQSVLAFLEISALSLPNLVRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + V LN SEL + RA G S WQL P + +L + +
Sbjct: 64 VLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVLSAAMMSALSLFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + ++ P I I P+ + F + D
Sbjct: 124 ASLAQMQLREAELSRSVSAKLLNAGNFLH---PSAGITFFVGSIDPDGTLNNVFLTDQRD 180
Query: 186 KKNKIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+I + D + +D L ++ + + +
Sbjct: 181 PSVEITYTSDRAYLVREDDMAHLILVDGLAQRKEAHNDRLSTTAFADFSYPLGDLSPART 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSL 296
+ + ++++ ++ + + + A+ +I S +
Sbjct: 241 MGARPLRNIPTLDLLRDRDEITQNEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLLG 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR + ++ + + + + + + P+ +P + + +S++ L
Sbjct: 301 GFSRFGIWKQVLVAFVLLILIEGMRGVVSEPVRDNAQMWPLI--YLPAAIGVLISMIFL 357
>gi|292486865|ref|YP_003529735.1| inner membrane protein YjgP [Erwinia amylovora CFBP1430]
gi|292900738|ref|YP_003540107.1| permease [Erwinia amylovora ATCC 49946]
gi|291200586|emb|CBJ47717.1| putative permease [Erwinia amylovora ATCC 49946]
gi|291552282|emb|CBA19319.1| Inner membrane protein yjgP [Erwinia amylovora CFBP1430]
Length = 366
Score = 86.3 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 114/339 (33%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + L + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + Q ++ Q +FI K +++
Sbjct: 121 GPWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + + ++ + ++ +
Sbjct: 181 GNARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + ++ ++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVTLDPNDSEQMSLDTLWHSDKPDFRSELHWRLTLVFSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + + ++S G G + P A
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSSGGKGRIDPAVAMWA 333
>gi|320088912|emb|CBY98670.1| Lipopolysaccharide export system permease protein lptG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 220
Score = 86.3 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 5/164 (3%)
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
+ D+ L+ + + S T + D + + S +
Sbjct: 61 HKVWRLSQVDESDLQNPKQITGSQTV----SGTWKTNLTPDKLGVVALDPDALSISGLHN 116
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+ + S R + + I PL + M L+A S RS + V GI
Sbjct: 117 YVKYLKSSGQ-DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISF 175
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 176 GFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 219
>gi|194290552|ref|YP_002006459.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
gi|193224387|emb|CAQ70398.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
19424]
Length = 376
Score = 86.3 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/355 (12%), Positives = 111/355 (31%), Gaps = 10/355 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL + + T L + + + I S + +L +
Sbjct: 2 ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAAN-GKASPNDVLMLIGLATIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++V + SE+V+ + GIS+ L+ P + + + +L+
Sbjct: 61 SILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFIVLALLLGLFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSI 182
+ +++ G +++ + +FI G + +
Sbjct: 121 WPWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVANAE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ H+ + + V ++ Y ID + + +
Sbjct: 181 ADKIGVALAHQGQFETMPNGDRLVVMENGRRYSGTPGQIDYRIVEF------ERYAVKVD 234
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + K + + + I +P++ +IA ++ R
Sbjct: 235 NKPPESEASLPPKSRDTIDLIRNPTRENLGELVWRISLPILAFNFVMIAIPLAYVNPRLG 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +V + +I + +S+ ++G + A P+ L + L L+L +
Sbjct: 295 RYTPLVF-AVLIYLTYSNLINLSQSWVRNGSIPFWLA-WWPIHLAVFLGALLLFR 347
>gi|58040479|ref|YP_192443.1| hypothetical protein GOX2051 [Gluconobacter oxydans 621H]
gi|58002893|gb|AAW61787.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 380
Score = 86.3 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 116/367 (31%), Gaps = 13/367 (3%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
MP +L + + L L + L+ ++ L E + + A +
Sbjct: 19 MPRHVLIKALNRALLGRFLLCGAVLVSLLEILALLEKTTPILNR-HLGFRGILTFAFLHL 77
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + I+P +V + + + +SE+ RA G+S L + ++ GI
Sbjct: 78 PALSIDILPLAFMVGALFLLTQMTLSSEISALRAAGLSTPALYRLLLPAVLIAGIGGTCA 137
Query: 120 INPIATSGEKI--GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + E D Q D I W + + +I
Sbjct: 138 QYWLVPACENALTTWWNRTDPLAGQDGQPEDNILWFRAGP----TLVRIGQIAQGGTFLR 193
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIK 233
D T D + + ++ + + + N +T IP
Sbjct: 194 DVTIYHRDNTGLLTGTEHTNVLTYRDGQWHPDGAQDLSLSDDKSYVNVTKGDSTFVIPAT 253
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
S+ A+ + + + + + +++P+ + M L+
Sbjct: 254 PSVIMTLSQNGATVTPAQ-VSAILHKGAPASLPRATYRMALFSGMILPVEIAVMLLLTLP 312
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
V R+ + Y + +G + ++ + G +G L A + +L L +
Sbjct: 313 VIYIPPRAGLRNPLPVYVLAAGMGFVILQGMISALGNAGTLPAPLAVSVGPLLGTLLGLT 372
Query: 354 ILLQKED 360
LL+ E+
Sbjct: 373 WLLRMEE 379
>gi|157827727|ref|YP_001496791.1| putative permeases [Rickettsia bellii OSU 85-389]
gi|157803031|gb|ABV79754.1| Putative permeases [Rickettsia bellii OSU 85-389]
Length = 362
Score = 86.3 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + +L ++ + + +VP +
Sbjct: 5 KTLSWYLAKLYFKCFFIILFILIGLLIISNLFDLLQKFKNMY-VPFDFFWRFILYKVPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPCIVTLILGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I G + L + + S + ++ I + I + T
Sbjct: 124 IGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ID N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 VLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFT-KDSTEAHNNLTIPTNLSVNSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S +++ K + S + + +Y + P M++A ++A+ R
Sbjct: 243 FTHPEMVSIWKLPKLIDELLNSGLP-ITNYQVYYYKQLFKPAMMIATIILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF++Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILH 358
>gi|261867783|ref|YP_003255705.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413115|gb|ACX82486.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 372
Score = 86.3 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 55/351 (15%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 6 ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+L +
Sbjct: 65 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ K N + ++ +N +FI + N+++ T
Sbjct: 125 TPWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDIQNNQINNVYVFQTQPR 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K +I + +L + N L ++ + + +
Sbjct: 185 GQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVN 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S E+ ++ A+T+F++ + + L + M L+A +S R +
Sbjct: 245 DDSAETEEL-----SLSQLLNTKTPAAKTEFHWRLTLILAVPIMALLAVPLSRVNPRQGR 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + + + + +KS G +G L + I+ L+IL+
Sbjct: 300 FAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILL 349
>gi|222099907|ref|YP_002534475.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
gi|221572297|gb|ACM23109.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
Length = 1048
Score = 86.3 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 51/346 (14%), Positives = 122/346 (35%), Gaps = 14/346 (4%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
L L G + + I++ + + I + +L +P + +P L+
Sbjct: 2 PFLIGLGGFI-IFVSIEILYQLSDLIVRHRVGIGKLFLLLYYYLPYFVAMGVPVGVLLSI 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
F L+ EL+ + GIS L+ PF+ S+LL + + + + + + +
Sbjct: 61 FWTFSKLSEDRELMAIQVHGISQKNLIVPFLFLSVLLSVIVFFLNDQVVPVYQSRAEEAM 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
++ + IS +D + +K + + + + KI+
Sbjct: 121 SKYVLKKPEVFVVENV---ISKIGEDQYFYVEKYDEKTNTLWNVVIFKYGSEEKIVTA-- 175
Query: 196 ADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
++ L Y + ++ + + L+I ++ + + +
Sbjct: 176 -KRVQKREERWYLFDGRYYTVDKDGFLKLDVHFSEMELDITEDIENLLRVGKTPREMTGK 234
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
E+ +K+ F K I + + L + + L+ +SL F ++ ++
Sbjct: 235 ELKEKIEFFRKVGIKPSP-WIVELQSRYANSLTPIVIVLVGVPLSLLFQLRSKSWGVIFT 293
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + + GK +L P A IP I+ + L+ +
Sbjct: 294 FVLV-VLYQGSGAWLSAMGKENLLDPGFAPWIPNIVFSVMGGLLFV 338
>gi|58040480|ref|YP_192444.1| hypothetical protein GOX2052 [Gluconobacter oxydans 621H]
gi|58002894|gb|AAW61788.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 393
Score = 86.3 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 107/365 (29%), Gaps = 16/365 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY LL +I + + L + + + + S+ L +P
Sbjct: 16 ILDRYLLTQMAPPFAIALLAMLIALLLERLLSLFDYLASAGS-SLGTCIALLTDLLPHYF 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + + ++ +E+ +A +S+ ++ PF++ +LLG +V + I
Sbjct: 75 GIALPAALCIAVFLTIRGMSDNNEIDALQAGRVSLMRISRPFMIVGLLLGAASVFLYGYI 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + S+
Sbjct: 135 QPVARYDYRAGFYFAEHTGWAPHLQAGMFASTSSKAVMTADSVSHAGTRLRRVFIREVNA 194
Query: 184 IDKKNKIIHRK------------DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ I R DL + ++ + ++ P
Sbjct: 195 NGVAHIITARTGALTISEKTRSTRLDLWNGEIVDDPFQATKPHKPTVTHFEHVVRVIDRP 254
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K F+ + +E+ + + + RAE F + + + + +A
Sbjct: 255 NKETSFRSRGADERELTLFELAHDLRYGLPGIEYRTLRAEMD--FRMARAIAIPFIPPLA 312
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++++ R ++A + + S +G L A +P +L
Sbjct: 313 VALAISARRRKSVWGLIAVAVIL-IGFDQTLMFGHSLASTGRLPIWLAIWVPELLFCVGC 371
Query: 352 ILILL 356
+ LL
Sbjct: 372 LAALL 376
>gi|332290237|ref|YP_004421089.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
gi|330433133|gb|AEC18192.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
Length = 363
Score = 85.9 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K LK+ L L +++ L + N + L +P +
Sbjct: 2 ILTKYLIKETLKSQLAILFILLVIFLAQQLVRVLGSAVN-GNVPVDVILPLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + +A GI L+ ++ SI+ +
Sbjct: 61 QLMLPLSLFLALLLTLGRLYSESEITVMQACGIGPNALVKVGLILSIVTAAIAAYNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++++ K N ++ +N +F+ K + I+ T
Sbjct: 121 TPWALKKQVEVVENAKANPSASAITPGQFISSNNGNFVLFVDKVKGDQLSDIYLFQTRQV 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K +I + + + + L ++ + + + +
Sbjct: 181 GKVKPSVIVAEQGNFSTAKDGSQTLALKNGERFEGSAVLPEFRVTHFQDYLAFLAFNPAK 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
M SN + A+ + + I + L + M LIA +S R +
Sbjct: 241 AEEADLD-----MQDSNALLKNSSANAKAELQWRISLFLAVPLMMLIAIPLSKVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + +K+ G +G + ++ +L + L I++
Sbjct: 296 FAK-IIPALLLYLIYFLLQSSLKTAGINGKIESHYWMILVNMLFLLLGIIL 345
>gi|329114705|ref|ZP_08243463.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
gi|326695971|gb|EGE47654.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
Length = 411
Score = 85.9 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 12/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY + L L MI + + L + N + N I L A +P
Sbjct: 32 PGTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFN-LLAAGNNHIGIFIGLLAALLPH 90
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP V V +++ E+ + G+S+ ++ P++ ++LGI + L+
Sbjct: 91 YLGLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGILSFLLYG 150
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDFT 180
I G + + S+ + ++ +++
Sbjct: 151 FIQPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDL 210
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
S ++ + ++ L V + D ++ L +
Sbjct: 211 SEQQERDITARNGHIRIGLDGETVEIDLTHGVIVTDKGDGVPSLVTFDHSTRYLTHASHV 270
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ E + E++ ++ + S + R+E +F + L + + L+AAS+
Sbjct: 271 SPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEV--HFRMARSLTVPFIPLLAASL 328
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L R + II S + + P ++ I L+
Sbjct: 329 ALMRKRQRNNA-GLPLAFIIMVGFDHIIQFGHSMVATKKASLLL-IWGPSLVFIVGCTLL 386
Query: 355 LLQK 358
LL K
Sbjct: 387 LLYK 390
>gi|77463457|ref|YP_352961.1| permease [Rhodobacter sphaeroides 2.4.1]
gi|77387875|gb|ABA79060.1| Predicted permease [Rhodobacter sphaeroides 2.4.1]
Length = 376
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 111/358 (31%), Gaps = 9/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + +F L +++ ++ + + + S + +P +I+
Sbjct: 4 FDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLIS-DGQSALVFLEFSLLALPNVIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P I V L++ SELV+ +A G S ++L P + +++ + ++++N +
Sbjct: 63 LVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + N + ++ ++ + +
Sbjct: 123 PASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPA 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + + + T ++ M G
Sbjct: 183 RSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFS 299
++ + + A + + I P + A +LI A++ L
Sbjct: 243 RRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
+ + + ++ TI G + L P+ A + ++ IL+L
Sbjct: 303 SRFGLWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPL--AYAAPVTGFAIGILLLW 358
>gi|257487385|ref|ZP_05641426.1| hypothetical protein PsyrptA_29198 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 205
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 8/212 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L L + LV + + + + Y+++ P
Sbjct: 1 MVK-LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDT--YTLADALSYVMLTAP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV
Sbjct: 58 RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + +GD Q + W + + I + N + T
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINT-----VQPNGLMLGVT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
D + ++ A A D +LK V
Sbjct: 173 RYRFDDQRHMLTSSFAKEANFKTDYWELKDVS 204
>gi|325578600|ref|ZP_08148700.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
gi|325159836|gb|EGC71966.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
Length = 363
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 121/356 (33%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K N +M SN +FI + ++
Sbjct: 121 SPWAIQKQAAIVEDAKANPTMGALTSGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K ++ + +L + N L +V + +
Sbjct: 181 GQTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGHQETN 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S++ A SF +++K S + K+ + ++ I + L + M LIA +S
Sbjct: 241 TESDEAAELSFEQLLKDKSSAAKAEL----------HWRITLILAVPLMALIAVPMSKVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + KS G +G L + I + L I++
Sbjct: 291 PRQGRFAK-ILPALLLYLIYFLLQSSFKSAGGAGKLDAGLLMPLVNIAFLILGIVL 345
>gi|218885480|ref|YP_002434801.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756434|gb|ACL07333.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 379
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/329 (12%), Positives = 112/329 (34%), Gaps = 10/329 (3%)
Query: 36 IQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIG 95
++ + ++ +L P + ++P ++ + F ++ ELV +A G
Sbjct: 23 QLRELFLGLDLGLADAVLLFVYLTPFFMLLVVPVACMLSVFLTFLRMSTDRELVALKAGG 82
Query: 96 ISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+S++Q+L ++ +L + T+ + G + ++ + + +
Sbjct: 83 VSLYQMLAAPLLFCVLCTLLTLGISLQGLAWGMANFRATVMDIANSRARVVVQPGVFNKD 142
Query: 156 SN-------PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL 208
+++ E+ ED T + I + + +L
Sbjct: 143 IPGLTLFARQVDPADNRLSQVIVEDRSREDSTLTILAPTGAIATDEARGELLFRLQNGRL 202
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN- 267
K Q + + +++ + G + S+ ++ K N+
Sbjct: 203 YKTEGQQVSVLGFGEYVVRIDLGLMFKGLDLGRVKPKELSWEQLRALPLDDGKGNVDDKL 262
Query: 268 -YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+ + + V P + + L A ++ F ++ V + + Y++++
Sbjct: 263 LRKVAVEVHKRWVFPAACLVLGLFAMPLACAFEGLHRQ-FGVVLALLMFLVYYSLLSFGL 321
Query: 327 SFGKSGILLPVAAALIPVILTISLSILIL 355
+ G++G + P P +L + + L
Sbjct: 322 TTGEAGTIAPEVGLWTPNVLFLGAGLWGL 350
>gi|294678216|ref|YP_003578831.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
gi|294477036|gb|ADE86424.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
Length = 376
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 106/361 (29%), Gaps = 10/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + +F L + + +V + +++ + A +P
Sbjct: 1 MKRLDRYLLSQLMAIFGFFALVLVSVYWVNRAVLLFDKLIG-DGQTAWVVLEFTALTLPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++P + L+ SELV+ ++ G S W+L P V +++ + +++
Sbjct: 60 VISLVLPVAAFAAVLYAINRLSGESELVVMQSAGASPWRLARPVAVFGLIVAALMLALVH 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + Q + + + + + I+
Sbjct: 120 ELVPASRARLAERQAQVSQDVTARFLTEGSFQTPTAGITVYIREISDLGELLDIFLYDAR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + + V + + T ++ +
Sbjct: 180 GQRAETIYTAEKALIVPSEAGPKLVMFDGTAQTLRPSDGSLALTRFSDFTYDLGGAIGTG 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL- 296
+ + ++I + A + + PLM LIAA+ +
Sbjct: 240 LRGRIDWEEVPSRDLIAPGPELLAATGSTVAAAHLELNDRLAQPLMAPVAALIAAAAMML 299
Query: 297 -EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR + + + L ++ + S ++ + A L + +
Sbjct: 300 GGFSRLG-LWRQIGLAVLALIGLQSLSNVATSMTRAD--PALWALHYMPALAGLAGVALA 356
Query: 356 L 356
L
Sbjct: 357 L 357
>gi|83594275|ref|YP_428027.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
gi|83577189|gb|ABC23740.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
Length = 396
Score = 85.9 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/328 (11%), Positives = 102/328 (31%), Gaps = 15/328 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L + ++L+++I+ + + S++ L +P +
Sbjct: 5 TLHRYILRNLLVGLAVGSVALIVLIWLINSLKFLDWFVNK-GLSVATFLRLTLLLMPGFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP V + + L EL++ RA G+ WQL P + +L + +
Sbjct: 64 TVFIPIALFAVVLFTYNRLAADRELIVMRAAGMGPWQLARPALALCAVLTGVGYWLTLSV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWE 177
+ E + + + + + + ++ ++ + +
Sbjct: 124 VPAMEGAFEAIKYEVRGEVSSLVIKEGQFNQMKDGLIVYAGERAKDGRLIDLMIHDTTGK 183
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + ++ + ++ N + + + + D + L
Sbjct: 184 TSDLTVMAESGALVREGEGARILLINGNRQERNRQTGKVNFLYFDSYAVDLGGKAASTEM 243
Query: 238 QKFSEQFASRS---FYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E+ S + ++ H R + + ++ PL + LI
Sbjct: 244 RFREERERPLSELISLKAGDRIDPDYPFTYEERHIRRMRMEAHLRLLRPLAHIGFLLIGL 303
Query: 293 S--VSLEFSRSNQPRIIVAYGIFSGFML 318
+ ++ EF R V + +
Sbjct: 304 AAVLTGEFDRRGGN-KRVILAVALVVLF 330
>gi|126462312|ref|YP_001043426.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103976|gb|ABN76654.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
Length = 376
Score = 85.9 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 110/358 (30%), Gaps = 9/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + +F L +++ ++ + + + S + +P +I+
Sbjct: 4 FDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLIS-DGQSALVFLEFSLLALPNVIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P I V L++ SELV+ +A G S ++L P + +++ + ++++N +
Sbjct: 63 LVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + N + ++ ++ + +
Sbjct: 123 PASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPA 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + + + T ++ M G
Sbjct: 183 RSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFS 299
++ + + A + + I P + A +LI A++ L
Sbjct: 243 RRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
+ + + ++ TI G + L P+ A + + IL+L
Sbjct: 303 SRFGLWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPL--AYAAPVTGFVIGILLLW 358
>gi|56479504|ref|YP_161093.1| hypothetical protein ebA7173 [Aromatoleum aromaticum EbN1]
gi|56315547|emb|CAI10192.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 359
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/356 (10%), Positives = 114/356 (32%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + ++ + ++ + L + Q L +
Sbjct: 2 IFSRALQREFFQSAAGVFVALFAILITVVLIRLLGQAAG-GRLPSDAVLALIGFGSLSRL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++ R SE+V+ A G+ + + P + ++ + + V +
Sbjct: 61 PIVLSLTVFIAVLLSLSRSYRDSEMVVWFASGLPLTAFIRPVLRFALPIVLTIAAVTLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-ENHIWEDFTSI 182
A + + + D + + + Q+ F+ + T
Sbjct: 121 APWAQLKSAEYQARIDSRNDASRIAPGVFRESVGAQRVFFVETGAGEDGKVRNVFVSTEK 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + V L+K Y+ + + + ++ +
Sbjct: 181 DGRLDVIVSAEGSLRTDAEGDRFVVLEKGRRYEGEPGSPEYRVLEFDRYSVLVEEREAAG 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S ++ ++ R + I +P+ + + L+A +S R+
Sbjct: 241 PASRTSTTPTLELLAD-------PTPRKLGELLGRIGMPVAALLLALMAIPLSFVNPRAG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + I + + I++ +++ G L A +P ++ +++ L+ ++
Sbjct: 294 R-ANNLLFAILTYLVYSNAISVFQAWVSQGRLRFELAVWLPHVVVLAVLALMFYRR 348
>gi|296116656|ref|ZP_06835266.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295976868|gb|EFG83636.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 386
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/364 (12%), Positives = 118/364 (32%), Gaps = 16/364 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L + +L+++ + + S+ L + +P +
Sbjct: 17 ILDRYVLRQLLLALVATTGALALLIWLTQSLHFVSLVVGR-GLSLRVFVQLTSLLIPSFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P T VV ++ L EL + +A G+S + + P ++ +++ + + +
Sbjct: 76 AVILPITTFVVVQFIYQRLGSDRELTVMQAAGLSPFMMARPALLCALVSVLACYALNLWV 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ Q ++ + Q+S+ + I +
Sbjct: 136 VPTAYHGFRQYEYQIRNKMAAFLIQDGVFTQVSDNMTVYIRARDPSGMLHGIMVEDDRQP 195
Query: 184 IDK------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + + D +++N + + + ++N+ L+ G
Sbjct: 196 DAQATILAEEGSFVITNDQPRIVLFNGSRQEIDRKTGRLNMLSFERNTIDLSA---PHGT 252
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA--SVS 295
Q ++ + + + + + + PL + +I ++
Sbjct: 253 QTRQPDANELPITALLHP--NLRQFSPRDEKKMIIEAWRRLTSPLCAFSFAMIGLLSALG 310
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR VA + + + + ++ L+P+ + +L + + +L
Sbjct: 311 GGFSRHGNIVRPVAATLAVVAVQALTLLVQNLASRNLALMPL--MWVSAVLPGMVCMAML 368
Query: 356 LQKE 359
E
Sbjct: 369 FWPE 372
>gi|301058944|ref|ZP_07199913.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446940|gb|EFK10736.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 358
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/341 (12%), Positives = 100/341 (29%), Gaps = 11/341 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K + M + + S +L R+ + +
Sbjct: 2 IIDRYIMREISKPAMTICTVLMGIFGSYIATRYLEDAVQ-GQLPGSTVILLVLLRIAISL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ F +E+ A GIS+ ++L P ++ ++ G+ I
Sbjct: 61 EVLLPTTLYLSVMIAFGRFYMNAEMTGMSACGISMVRVLKPVMLLAVTAGMIVACFSLYI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPENHIWEDFTS 181
+L K + D + + +I + ++ +F H++
Sbjct: 121 RPWAWNQFFELKTGAKVDFDITRMKGGNFYEIEDGERVLFADKVDHGKHRALHVFMQIKR 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + Y + S
Sbjct: 181 HGELEIVYAESATQRFRNTTPEPVLVFQNGRLYTFSETEKTWKILQFRNLEM-------S 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + K + + + A + + + P + + L+ +S F R
Sbjct: 234 LTSNNVEPLKQKAKAFSTEQLWHSDHPEALAELQWRLTAPFSTILLALLGVPLSRSFPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ V GI + Y + I K + G++ V
Sbjct: 294 GKYTK-VPLGILVFAVYYNLSAITKKWVGQGVVGGVPGIWW 333
>gi|293390144|ref|ZP_06634478.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950678|gb|EFE00797.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 372
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/351 (15%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 6 ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+L +
Sbjct: 65 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ K N + ++ +N +FI + N+++ T
Sbjct: 125 TPWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDIQNNQINNVYVFQTQPR 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K +I + +L + N L ++ + + +
Sbjct: 185 GQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVN 244
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S E+ ++ A+T+F++ + + L + M L+A +S R +
Sbjct: 245 DDSAEAEEL-----SLSQLLNTKTPAAKTEFHWRLTLILAVPIMALLAVPLSRVNPRQGR 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + + + + +KS G +G L + I+ L+IL+
Sbjct: 300 FAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILL 349
>gi|296115281|ref|ZP_06833921.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
gi|295978184|gb|EFG84922.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
Length = 406
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/369 (13%), Positives = 112/369 (30%), Gaps = 15/369 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPG L Y + L M + + L + N + + S+ L VP
Sbjct: 9 MPGTLDHYLLQQVTPPFSISLGVVMAALLLERLLALFNLLASNGS-SMKTFVSLLTDLVP 67
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P V V +++ E+ A G+S++++ PF+V +LG+ + +
Sbjct: 68 HYLGLALPAAMCVSVFSVIRRMSQNHEIDALMASGVSMFRIARPFIVVGAILGVLSFSLY 127
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + +G + S+
Sbjct: 128 GFIQPYARYNYRSALYFASHSGWAPHLQSHMFAAPSHDLMLTAEKVDDAGSRMFKVFIRD 187
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKL-----------KKVVEYQYGRIPIDKNSTTLN 229
+ D I RK DK++L + +
Sbjct: 188 NSNHDLTRYITARKGYLYIPNDEDKIRLDLIDGTIITDRHDKSPSVIHFDHTTELFSPHA 247
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K+ ++ + + E+ + + AE +F + L + + L
Sbjct: 248 QLDKLKAYRTRGQTERELTLPELYRGIRHGMPGIKHSYLVAEL--HFRLARTLAIPFIPL 305
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A ++++ R + + + + + + S + + P+ +P ++
Sbjct: 306 LACALAVMAKRQKR-SLGLPIAAIALVGFDHTLQMGLSLVANVHMSPLLVIWLPTLVFGI 364
Query: 350 LSILILLQK 358
+ L+ +
Sbjct: 365 GCVWALIWR 373
>gi|118594056|ref|ZP_01551403.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
gi|118439834|gb|EAV46461.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
Length = 372
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 115/353 (32%), Gaps = 5/353 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T+L +L +V I + + + + + ++
Sbjct: 7 LTRELFFTSLSTILVLSGIVVAQRAV-IVFRFAARGSIPNDAIDTVLVFNLLKHMPLLLS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + SE++I + G+ ++ L+ P ++ + I + I+
Sbjct: 66 LTVFITILITLSRWYKDSEMIIWFSSGLGLYSLIKPIILFCFPIIILIASLSLYISPWAV 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSITIDKK 187
+ + K + + + + + +I G + + +
Sbjct: 126 QKAEEYKTGLKSRDEIATITPGTFKESKSNNRIFYIEGFSSLGSKVKNIFIQSMQNGKLG 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQKFSEQFA 245
+ + + N+ + LK Y+ + ++TT + + + A
Sbjct: 186 VIVSNEGERIEDNNNNNYIVLKNGRRYEGIANSKEFSTTTFDEYGILMEKTPKNNLNVGA 245
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
E ++ N + + + + I +PL + + +A +S +R+ +
Sbjct: 246 KAGIIEATPTLALIFNQNDSNRKQFLAELMWRISLPLSTIFLIFLAIPLSFINNRTGRSF 305
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ +F + + I +S G + L ++ ++ +L ++
Sbjct: 306 NMIV-AVFIFVIYNNFLGIFQSLISVGKIPLWLGFLPVHLVFGLVAFYLLHRR 357
>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 379
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/357 (10%), Positives = 106/357 (29%), Gaps = 11/357 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + + + S+ ++A +P +++
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIG-DGQSVLAFLEISALSLPNLVRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + V LN SEL + RA G S WQL P +V +L + +
Sbjct: 64 VLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + ++ S + +++
Sbjct: 124 ASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRDPSV 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ------- 238
+ R + + + + + + + +
Sbjct: 184 EITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARAAGA 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ + + + V M ++ + F
Sbjct: 244 RPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFA-VVMIGVSTLLMGGF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
SR + ++ + + + ++ + P+ +P L + +S+L L
Sbjct: 303 SRFGIWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLI--YLPATLGVMISVLFL 357
>gi|312170934|emb|CBX79193.1| Inner membrane protein yjgP [Erwinia amylovora ATCC BAA-2158]
Length = 366
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 114/339 (33%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + L + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + Q ++ Q +FI K +++
Sbjct: 121 GPWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + + ++ + ++ +
Sbjct: 181 GNARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + ++ ++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVTLDPNDSEQMSLDTLWHSGKPDFRSELHWRLTLVFSVLIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + + ++S G G + P A
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSSGGKGRIDPAVAMWA 333
>gi|77165379|ref|YP_343904.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|254433097|ref|ZP_05046605.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
gi|76883693|gb|ABA58374.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|207089430|gb|EDZ66701.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
Length = 381
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/351 (9%), Positives = 103/351 (29%), Gaps = 19/351 (5%)
Query: 1 MPG--ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I+ RY K L +++ I +Q E L+
Sbjct: 1 MFKLLIVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATE-GKVPGEAILALSGYE 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ ++P + + ++ + +E++ A G+S LL + + L I
Sbjct: 60 AIGALVLLLPLASFLAVLLALGRMGADNEVIALFACGVSRGHLLRVVLTFGLALAIGVGG 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + + G L QQ + + + + Q+ + +
Sbjct: 120 ISLYLGPAASAEGYRLKQQALLAAETSGLVAGNFKEAQHGQRVFYAESLTEDGLGMKNVF 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+K + + + + L+ Y+ + + +
Sbjct: 180 IQVWEPTQKTLLRAARGHLQTDEATGDKYLILEDGYRYELMGEEVGVRIFSFERHGILVK 239
Query: 237 F---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+F + + + + + + + I +P++ + + ++A
Sbjct: 240 KGGAQEFRIRHQTLPTLTLWE----------MGAPKDIAEVQWRISMPIITLLLVMLAVP 289
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ R + + + + ++ I +++ + ++
Sbjct: 290 LARSGPRQGRYA-GLVPAVLVYVIYSNMLGIARNWVEHEVIPASLGLWWIH 339
>gi|226943298|ref|YP_002798371.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226718225|gb|ACO77396.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 376
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/351 (10%), Positives = 105/351 (29%), Gaps = 17/351 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L T + ++ + Q + + RVP +
Sbjct: 5 IIPRYLSRELLMTLGAVSAVLLAIIMSGRFIKYLAQAAQ-GLLDPGVLLQIMLYRVPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + L SE+ + A G+S +L +V +I + + +
Sbjct: 64 ELILPLGLFLGILLAYGRLYLDSEMTVLAATGMSPQRLAVYTLVPAIPVAALVAWMSLGL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA--------KKILPENHI 175
A G ++ L+ + K + + + + + ++ ++
Sbjct: 124 APQGIRLVEQLLNEQKALTEFDTLVPGRFQTMKDGSRVTYVEDLTDDRTELSRVFISEKQ 183
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ ++ + + L+ Y D + +
Sbjct: 184 MSRDGGKERGIAVLVAEGGRQEVQADGSRYLILQNGYRYDGNPGEADYRVIRYDTYGVLL 243
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + R + + R + + + + +PL++ + ++A ++
Sbjct: 244 ARPAVSSEINEREAIPTSELI-------GSDQPRHQAELQWRLSLPLLVFVVAVLAVPLA 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
R + + + I + ++ G + + +
Sbjct: 297 RANPRQGR-FLKLLPAILLYMAYLATLIAVRGELDKGKIPMLIGLWWVHGV 346
>gi|312113656|ref|YP_004011252.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218785|gb|ADP70153.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
Length = 387
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/373 (12%), Positives = 121/373 (32%), Gaps = 29/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ + L+ ++V++ L ++ + + A +P +I
Sbjct: 2 LISRYIFRQTASALIMILVSLTLIVWLTSLLREI-KLLTAQGQTFLLFLQITALAIPSLI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ + L+ SEL++ A G S+W+L +P++ ++++ + + +
Sbjct: 61 VTVAPVAFLIAALHSLNRLSGDSELIVLSAAGSSVWRLFSPYLFLAVVVSMCVLTANLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ D + Q + + Q + S+ + + + +
Sbjct: 121 LPNAARLLGDTVSQVRADVLSQVIQPGEF---SDLEPGLTFHMRAKGDNGELLGVVVRDE 177
Query: 184 IDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDG 236
D K + + + + L + S +I
Sbjct: 178 RDPKAVTTVIAEQGQILQDGGRASMMLHDGQIIRQQAEKTAAQVVVFTSYAFDIGDFSAK 237
Query: 237 FQKFSEQFASRSFYEI----IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ R E+ + +++N F + E L I ++A+ +
Sbjct: 238 KGPRERKPRERDIGELLFPDKESPAYTNTKGSFRSEIHERFSGALYPIAFAIIAVLYLGR 297
Query: 293 SVSLEFSRSNQPRIIVAYG----IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ R+ G I + + + G + + +
Sbjct: 298 PKTTREGRTGNLFTAFTLGAAIRIAGIAGVNIVGKKAWALGLIYGIP----------VAV 347
Query: 349 SLSILILLQKEDG 361
++ L++L+ + G
Sbjct: 348 IVAGLVMLRLDIG 360
>gi|260771005|ref|ZP_05879934.1| predicted permease [Vibrio furnissii CIP 102972]
gi|260614242|gb|EEX39432.1| predicted permease [Vibrio furnissii CIP 102972]
Length = 347
Score = 85.5 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/333 (9%), Positives = 98/333 (29%), Gaps = 11/333 (3%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
++ + + + +P + ++P + ++ F L
Sbjct: 1 MLFLVFLSQKFIRVLADASD-GEIPARLILSIVGLNMPAMGLLMLPLSLYIGILLTFGRL 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
SE+ + A GI L+ + ++ ++ + +++Q
Sbjct: 60 YAESEITVMNATGIGNKFLIRAALYLGVITSCLAGFNALWLSPWSQDKVQSVMEQLAAEN 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW--EDFTSITIDKKNKIIHRKDADLAI 200
+ + + +FI + ++++ + +I D
Sbjct: 120 SVDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPRESILPSVMFSDAGDVKELS 179
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
+ + Y+ +D T + + G + E+ ++ + ++
Sbjct: 180 DGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKEKGRDWEAIPTLELIKNAD 239
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+S + I + + + +T++ +S R + + I +
Sbjct: 240 RSAQAE-------LQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAK-MGPAILIYLTYFL 291
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
I+ KS + G + + + +I+
Sbjct: 292 AISATKSALEDGSIPAIVGMWPINAALLISAII 324
>gi|91774577|ref|YP_544333.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
gi|91708564|gb|ABE48492.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
Length = 361
Score = 85.1 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/356 (10%), Positives = 113/356 (31%), Gaps = 16/356 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + + T + L +V + + + + L + + +
Sbjct: 5 RSLLQELVTTAIGGFLVLFGIVIAQRVAYYIG-VAAKGSLASDAINTLLGFSMLKFLPMM 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + ++ +R SE+V+ + G + + P + + + + L+ +
Sbjct: 64 LSLTLFLAVLLTLSRWHRDSEMVVWFSAGQGLSSWIRPVLTFGLPVIVVIALLSLFVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITID 185
G + Q K + + + + + F ++ +
Sbjct: 124 ATGKGAEFRDQLKSRDELASISPGVFKESRHADRVFFVESFDELGNIVKNIFVQSMQHQK 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSE 242
+ R + A +D + ++ Y+ + I I+ Q+
Sbjct: 184 LGIIVAARGHRETAENGDDFLVMQNGRRYEGTPNTAEYSITEFERYAIRIEPAEVQQQPP 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S++ E+ + H+ + + + + IP+ + L+A +S RS
Sbjct: 244 NTQSKNSLELFNE----------HSPDSIAELQWRLAIPISAFVLILLAIPLSFVDPRSG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + + +++IM+++ G + + + L+ + ++
Sbjct: 294 RSA-NLMMALLIYIVYNNLLSIMQAWLSQGKVPAMVGLWPVHAFFLLLTFWMFYRR 348
>gi|22124660|ref|NP_668083.1| hypothetical protein y0747 [Yersinia pestis KIM 10]
gi|45440496|ref|NP_992035.1| hypothetical protein YP_0644 [Yersinia pestis biovar Microtus str.
91001]
gi|51594884|ref|YP_069075.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
gi|108808932|ref|YP_652848.1| hypothetical protein YPA_2941 [Yersinia pestis Antiqua]
gi|108810813|ref|YP_646580.1| hypothetical protein YPN_0648 [Yersinia pestis Nepal516]
gi|145600504|ref|YP_001164580.1| hypothetical protein YPDSF_3250 [Yersinia pestis Pestoides F]
gi|153948230|ref|YP_001402496.1| permease [Yersinia pseudotuberculosis IP 31758]
gi|153997518|ref|ZP_02022618.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|162420063|ref|YP_001608339.1| hypothetical protein YpAngola_A4048 [Yersinia pestis Angola]
gi|165925825|ref|ZP_02221657.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165936618|ref|ZP_02225185.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|166010128|ref|ZP_02231026.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214282|ref|ZP_02240317.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398727|ref|ZP_02304251.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420598|ref|ZP_02312351.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423158|ref|ZP_02314911.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025893|ref|YP_001722398.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186893894|ref|YP_001871006.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930456|ref|YP_002348331.1| hypothetical protein YPO3440 [Yersinia pestis CO92]
gi|229839084|ref|ZP_04459243.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896572|ref|ZP_04511739.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|229899647|ref|ZP_04514788.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901016|ref|ZP_04516140.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|270489196|ref|ZP_06206270.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294505144|ref|YP_003569206.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
gi|21957469|gb|AAM84334.1|AE013676_7 hypothetical protein y0747 [Yersinia pestis KIM 10]
gi|45435353|gb|AAS60912.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588166|emb|CAH19772.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
32953]
gi|108774461|gb|ABG16980.1| membrane protein [Yersinia pestis Nepal516]
gi|108780845|gb|ABG14903.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115349067|emb|CAL22029.1| putative membrane protein [Yersinia pestis CO92]
gi|145212200|gb|ABP41607.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289155|gb|EDM39235.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|152959725|gb|ABS47186.1| putative permease [Yersinia pseudotuberculosis IP 31758]
gi|162352878|gb|ABX86826.1| putative permease [Yersinia pestis Angola]
gi|165915267|gb|EDR33877.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|165922437|gb|EDR39614.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165991035|gb|EDR43336.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204514|gb|EDR48994.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961404|gb|EDR57425.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051231|gb|EDR62639.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057328|gb|EDR67074.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752427|gb|ACA69945.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186696920|gb|ACC87549.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682355|gb|EEO78447.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|229687139|gb|EEO79214.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695450|gb|EEO85497.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700350|gb|EEO88382.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|262367137|gb|ACY63694.1| hypothetical protein YPD8_3022 [Yersinia pestis D182038]
gi|270337700|gb|EFA48477.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294355603|gb|ADE65944.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
Length = 364
Score = 85.1 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ ++ + + + +Y + ++ + Q
Sbjct: 181 GNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+S ++ + A +F++ + + + +V M L+ +S+ R +
Sbjct: 241 QSSNGADQM-----SMKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S +G L P+ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSKAGNGQLDPLVWMWAVNGAYLALAIIL 345
>gi|294648981|ref|ZP_06726429.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292825116|gb|EFF83871.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 366
Score = 85.1 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/355 (16%), Positives = 130/355 (36%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L +++ L +I + + + A R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQ-GRLDGGVLLSIIAYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + + + I +++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A++G + L+Q ++ + ++ I+ + S
Sbjct: 121 ASAGIRGYQSLMQTQAVRAGFDLVRPKEFISSGSYTIYAGSLSEDRKNLKDIFYYYKSDR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK +++I K+A I ND + +V+ + I ++ T + +
Sbjct: 181 EDKPDQMILAKEATRVEIENDTASVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S E ++ +S S ++ + + I P ++V +A ++S R +
Sbjct: 241 VNFES--EDVEALSMSKLWQKRDDFVVRGELGWRIFGPFVMVVALFLAVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ L A V+L ++ + +K
Sbjct: 299 YYRLIP-AIFIFASLIVLMIAIKTRISKEELDIW--AYPAVLLIYGIAAALFTRK 350
>gi|91204945|ref|YP_537300.1| putative permeases [Rickettsia bellii RML369-C]
gi|91068489|gb|ABE04211.1| Putative permeases [Rickettsia bellii RML369-C]
Length = 362
Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + +L ++ + + +VP +
Sbjct: 5 KTLSWYLAKLYFKCFFIILSILIGLLIISNLFDLLQKFKNMY-VPFDFFWRFILYKVPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPYIVTLILGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I G + L + + S + ++ I + I + T
Sbjct: 124 IGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ID N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 VLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFT-KDSTEAHNNLTIPTNLSVNSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S +++ K + S + + +Y + P M++A ++A+ R
Sbjct: 243 FTHPEMVSIWKLPKLIDELLNSGLP-ITNYQVYYYKQLFKPAMMIATIILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF++Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILH 358
>gi|302879722|ref|YP_003848286.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
gi|302582511|gb|ADL56522.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
Length = 377
Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/352 (9%), Positives = 110/352 (31%), Gaps = 8/352 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + + + +V + L + ++ L + +
Sbjct: 22 RALVLEFAGNGVLVFAILLGIVVISQLIRFLGEAVS-GKLAVDGVLALLGFSALNYLSVL 80
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + ++ R SE+V+ + GI + + + P + + + L+ ++
Sbjct: 81 LSMSLFIAILLTLSRCYRDSEMVVWFSAGIGLTRWIRPVALFAAPVVTVIALLSLVLSPW 140
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
K D Q + + + + + F+ + I F +
Sbjct: 141 AMKRADDFKAQLESRDELATLTPGVFRESGQSDRVYFVETVDV-GNGRIGNIFVRSVQNS 199
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + ++ + N L + +Y P +++ + + + +
Sbjct: 200 QMGTMVAREGLQQTMPNGDRFLVLLNGTRYEGTPGERDYRIVEFERYAMRIESAASKQLL 259
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + + ++ + + +P+ ++L+A S+S R+ + +
Sbjct: 260 PNVRTLSTL-----ELWRNPTRWNLSELEWRLGLPISAAVLSLLAISLSYVNPRAGR-SL 313
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + +I++ ++ G L P L + ++ L +
Sbjct: 314 NLVLAMVLYMLYSNMISVTNAWVGQGKLSPGIGLWGIHALMLLITALFFYYR 365
>gi|307718797|ref|YP_003874329.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6192]
gi|306532522|gb|ADN02056.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6192]
Length = 361
Score = 85.1 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/343 (16%), Positives = 122/343 (35%), Gaps = 13/343 (3%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+ ++ +IDL + + + + L +P + +P TL +L
Sbjct: 22 SFVTILELIDLFTNLVAYID-ADLTTFQILHLQLLYLPKCVTYSLPIATLFAVAFSLGSL 80
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+ ++EL+ GIS+++ + PFVV +L + +A +L+
Sbjct: 81 HASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEELLAIPSLTQKQELMAILMGRT 140
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ + + + + + ++ +H D++ + R +A+
Sbjct: 141 SPTQVVNVTLVGE---ENRLVVHTRRYDDRSHTITRVLVYEKDEEGEFASRIEAERGTWD 197
Query: 203 NDK--VKLKKVVEYQYGRIPIDKNSTTLNIPI-----KMDGFQKFSEQFASRSFYEIIKK 255
D+ L++V Y K + + + + F + + E +
Sbjct: 198 PDQREWVLQRVRRYIRDEEGNLKEESFEKLRTDLGEIQPEDFLQTRHSIDKMTLAEAGRW 257
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+ ++ + + A T +Y I + L+A SV+ F + ++ + G
Sbjct: 258 IQTLKRAGLPYR-EALTDYYKRISFAFTSFIVALLATSVAGRFKANALLLSLLLS-LSIG 315
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
Y + F K G L PV A +PV++ S SIL
Sbjct: 316 VSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFKYI 358
>gi|94984157|ref|YP_603521.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94554438|gb|ABF44352.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 367
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/367 (14%), Positives = 125/367 (34%), Gaps = 15/367 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
RY L + L ++L+ + L + + + A L A VP
Sbjct: 1 MKRFERYVLAEILPPLVGALGVVIVLLLLALLEGVIAPLLAKGANPLL-VARLVALNVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q +P + ++ L SE+ + A G+ +L P ++ + L+ + T +
Sbjct: 60 ALAQGLPIALMFAALLGLSRLAADSEIKAALASGVPTSRLFRPVLLLAALVTLGTFAINE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDK-----QKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ T + + ++ + + + + + I +G E
Sbjct: 120 LLVTRAKVQVQSVQREIVLDNPRVIGLGTRDGQGNLVLRDALNRAISVGEALPGGELRDL 179
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
T ++I + ++ ++L+ + T + +
Sbjct: 180 RIVTMQAGLPPREVITAR-RGRLKPGSNVLELEDGQRITFQDARPVTVLTFARGSLPVQD 238
Query: 237 FQKFSE------QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
Q E + E++ +M + T + PL +A+
Sbjct: 239 VQASFEGGDATLKPIYLPLRELLARMQT-YRQQKVQAPADFTALHRKFAEPLAALALAFF 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S+++ RS Q + + + + F Y ++ + G++G + PV AA P ++ +
Sbjct: 298 VVSLAVFAFRSGQN-LGLVWALLLSFAYYATWSVFRVMGENGAVPPVLAAYAPDLIAVLA 356
Query: 351 SILILLQ 357
+L+L +
Sbjct: 357 GLLLLWR 363
>gi|171463871|ref|YP_001797984.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193409|gb|ACB44370.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 371
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 104/351 (29%), Gaps = 6/351 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ TT L + ++ + I + VL A + ++
Sbjct: 7 LRRELSFTTGGVFLVLVTIMVTTLVIRILGYAAN-GAVNPEDTLVLIALATLGYLAVLLT 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V ++V + SE+++ A G+S+ L+ P + + L I L+ +
Sbjct: 66 VSLFVATLIVLVRWYKDSEMIVWLASGLSVTNLIRPILQFATPLIIVIALLALFVWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSITIDKK 187
+ + Q+ + D + + + ++ FI + S
Sbjct: 126 RESTLISQRSQQRDDVSVVSAGQFKESAKAERVFFIEELDVDKSKVKNIFVANSKNGRLS 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + + L Y+ D N +
Sbjct: 186 IAVSSTGYIQNSEGGEKSIVLHNGRRYEGQPTQPDFRILEFNEYSTKIRSKDALAPAPR- 244
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
N N + + I +PLM + + LIA ++ R
Sbjct: 245 --DREKTITELLNDPNPTSVNPNRAELLWRIGLPLMALGLVLIAIPLAYVNPRLGNYT-A 301
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ Y + + ++ + ++F G + A +L + ++ +++ +
Sbjct: 302 MFYAVLIYLIYSNLLNLTQNFVSQGRISVFVAIWPIHLLALLITTVLIRNR 352
>gi|157826222|ref|YP_001493942.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
gi|157800180|gb|ABV75434.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
Length = 362
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 76/357 (21%), Positives = 145/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L L ++L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLAKLYSKCFLVILFLLIVLLIISNIFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVCSLISFTAMLFFLSNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S ++ I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNGENQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + LK+V N+ T+ + ++
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLKRVKVCT-KEETKAYNNLTIQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWSLPKLINELFNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+F GF+ Y++ I+ L AA L+P +L +S I+L
Sbjct: 302 DNSQEKILILGLFLGFIAYSLSEILLKILTYNNLSLTAAILLPSMLIFFISNFIILH 358
>gi|313200017|ref|YP_004038675.1| permease [Methylovorus sp. MP688]
gi|312439333|gb|ADQ83439.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
Length = 355
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/346 (10%), Positives = 113/346 (32%), Gaps = 10/346 (2%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ T + L +V + + + + L + + I+ +
Sbjct: 1 MGTAIGAFLVLFGIVIAQRVAYYIG-VAAKGSLASDAINTLLGFSMLKFLPMILSLTIFL 59
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
++ +R SE+V+ + G+ + + P + +I + ++ + G +
Sbjct: 60 AVLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVTPWATNKGSE 119
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
Q K + + + N + ++ + +
Sbjct: 120 FRDQLKSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQHQRLGVVVAS 179
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ +A ++ + ++ Y+ + ++T + E+ +
Sbjct: 180 QGHRTVADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEEPPGTAALGS 239
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
++ + N +N + + IP+ + L+A +S +RS + + +
Sbjct: 240 VELLKNHNPANNAEL-------QWRLAIPISAFLLVLLAIPLSFVDNRSGRSA-NMMLAL 291
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ +++I++++ G L PV + + L+I + ++
Sbjct: 292 LIYIIYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMFYRR 337
>gi|113868946|ref|YP_727435.1| permease [Ralstonia eutropha H16]
gi|113527722|emb|CAJ94067.1| predicted permease [Ralstonia eutropha H16]
Length = 375
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 116/355 (32%), Gaps = 10/355 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL + + T L + + + I M S + +L +
Sbjct: 2 ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILG-MAASGKASPNDVLMLIGLATIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++V + SE+V+ + GIS+ +L+ P + + + +L+
Sbjct: 61 SILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRELVKPVLQFAAPFIVLALLLGMFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSI 182
+ +++ G +++ + +FI G + S
Sbjct: 121 WPWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVANSE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ H+ + + V ++ Y ID + + +
Sbjct: 181 ADKIGVALAHQGKFETMPNGDRLVVMENGRRYSGMPGQIDYRIVEF------ERYAVKVD 234
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
A S ++ K + + + + I +P++ +IA ++ R
Sbjct: 235 NKAPESEAKLPPKSRDTIELIRNPTRENLGELIWRISLPILAFNFVMIAIPLAYVNPRLG 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +V + +I + +S+ +SG + A P+ L + L L+L +
Sbjct: 295 RYTPLVF-AVLIYLTYSNLINLTQSWVRSGAIPFWLA-WWPIHLAVFLGALLLFR 347
>gi|239831521|ref|ZP_04679850.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
gi|239823788|gb|EEQ95356.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
Length = 402
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 13/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L L A+ + + + + + + + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRID-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + ++ + + LV N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I + + L+
Sbjct: 180 DPALDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S+ ++ R + + + + L V +IA + +
Sbjct: 240 DDFVIYAKDRPLSYLLNPDP---NDPILQTRPLRYKAELHRRLTQWLYPVVFAMIALAFA 296
Query: 296 --LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + I + ++Y V L+P + +
Sbjct: 297 GDSRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDAGYIVLMYLVPAAVILVTGFA 355
Query: 354 I 354
+
Sbjct: 356 L 356
>gi|183179747|ref|ZP_02957958.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
gi|183013158|gb|EDT88458.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
Length = 228
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 2/229 (0%)
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ D+ G W + +N I + L ++W + +
Sbjct: 1 MARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENKKLSTVIF 60
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
L ++V + D + + S
Sbjct: 61 SEQVDYVANNEWLMKDAVLTRLVN-DIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSL 119
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + + ++ + R E + + P+ + M L+A S RS +
Sbjct: 120 TGLSDYVHYLK-ASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARIL 178
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 179 SGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 227
>gi|261855831|ref|YP_003263114.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
gi|261836300|gb|ACX96067.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
Length = 371
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/348 (14%), Positives = 122/348 (35%), Gaps = 6/348 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL RY + TL L ++L+ + +L + S +
Sbjct: 1 MP-ILNRYLLREASVATLGVTLI-VMLIMLANLLARSLSAAAEGSLPSSLIPAMMGFNAV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P + + ++R SEL + RA G L + +I + + T +
Sbjct: 59 KLLIYVLPVGLFIGLMFALGRMSRDSELTVLRACGYGPRHLSQAILWLAIPVSLLTASIS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ +I + + + +++ + + ++IG+K + I+
Sbjct: 119 LFAYPALQQVQSRMIDSARSQQVFNQLPVGRFIEEPSGKAVLYIGSKSGNGYSDIFAFNE 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + A + D + VV Q RI ++
Sbjct: 179 PTNTKNARQKPGVEMAPFGKLMTDSAGHRYVVLEQGRRIQGVAGEQDWSVIDYQTHEILV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + E K SN+ + + +FY+ + L ++ + LIA ++ R
Sbjct: 239 PGRADTENTQENKKSSLQLLHSNLPGD---QAEFYYRLSQALTVLVLALIAVPLAQAKPR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
S + + + + + +I + ++ K G L + I
Sbjct: 296 SGRYG-RLFWAFLLYALYFNLIALTENAIKHGELNLWQGLTLTHGTFI 342
>gi|153009928|ref|YP_001371143.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
gi|151561816|gb|ABS15314.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
Length = 402
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 13/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L L A+ + + + + + + + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRID-FLTTSGQTFQTIIQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + ++ + + LV N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I + + L+
Sbjct: 180 DPSLDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S+ ++ R + + + + L V +IA + +
Sbjct: 240 DDFVIYAKDRPLSYLLNPDP---NDPILQTRPLRYKAELHRRLTQWLYPVVFAMIALAFA 296
Query: 296 --LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + I + ++Y V L+P + +
Sbjct: 297 GDSRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDAGYIVVMYLVPAAVILVTGFA 355
Query: 354 I 354
+
Sbjct: 356 L 356
>gi|269140438|ref|YP_003297139.1| putative permease [Edwardsiella tarda EIB202]
gi|267986099|gb|ACY85928.1| putative permease [Edwardsiella tarda EIB202]
gi|304560231|gb|ADM42895.1| Predicted permease [Edwardsiella tarda FL6-60]
Length = 366
Score = 84.8 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ + + + G ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMALAFITGALALVNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + N + + +F+G K ++++ +
Sbjct: 121 SPWSSLHSDEVMAEARANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHNVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ L + + K+ +Y + ++ + S
Sbjct: 181 GSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + +F++ + + ++ M L+ +S+ R +
Sbjct: 241 LDPNNADQ-----ASMSALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G L P+ L + L++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWGVNGLYLLLAVVL 345
>gi|148244955|ref|YP_001219649.1| permease [Candidatus Vesicomyosocius okutanii HA]
gi|146326782|dbj|BAF61925.1| permease [Candidatus Vesicomyosocius okutanii HA]
Length = 360
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 62/349 (17%), Positives = 125/349 (35%), Gaps = 14/349 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K TL +L + + + + +G+ NY++ +P
Sbjct: 1 MKILTLYIVKTMAFYTLIVMLVWIGVYSFFNFLDEVKFIGQY-NYTVFEATKYIILNIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I L+ +++ NL TS+LVI R+ G+SI Q+ N V +++ +L+
Sbjct: 60 VMYSHSSVIILLGSLLALTNLASTSQLVIIRSSGVSIMQISNIVVWVALMFIAIIILIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + L + + ++ W++ + K + ++D T
Sbjct: 120 LVAPITTEYAECLRSKALEQNMTCRNQQEFWLKDNG-----LFIHVKKDFDAKSFQDITF 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-------PIDKNSTTLNIPIKM 234
I + + +D A + ++L K + YQ + ++ I
Sbjct: 175 IKLRAPGVLDSIIYSDNATFNGNNLELNKPIHYQLSKNGELTTFSKNYFEKYSVQISFNQ 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S + + K+MSF +N E + Y ++P+ LVAM L +
Sbjct: 235 KLIKNLKKDPRKLSTWHLYKQMSFL-TNNNLVADIVEIEIYKRFMMPVTLVAMILFSMLF 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R + G+ I+ + +A IP
Sbjct: 294 VFGSLRDASLGKKIFLGLMMSLFFELASRIIGVLSLTFNYNHFLSASIP 342
>gi|53803848|ref|YP_114530.1| hypothetical protein MCA2100 [Methylococcus capsulatus str. Bath]
gi|53757609|gb|AAU91900.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 339
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/333 (10%), Positives = 98/333 (29%), Gaps = 9/333 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M +V I + E + L +V + + ++P + ++V + R
Sbjct: 1 MTIVVSRKFLAILARAIE-GEVATDTIFTLLGLKVVVTLASLLPASVFLSVLMVLGRMYR 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+E+ + G+ ++ ++ + + + + E++ +LI + + D
Sbjct: 60 DNEMTVFACAGVGPLRIYRSILLFAGPVCVLGAFLSLQAMPWSERLSQELISKDEKGADV 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ + + S ++ + + I ++ +
Sbjct: 120 RGIKAGRFNEFSQGDVVLYAEQLNTDKTMSRVFAQSRRGDETGIVIAESGHMEINDAGDH 179
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
V L YQ D S + ++ + S +
Sbjct: 180 FVVLNNGRRYQGVPGRADFVLNEFQAYG-------VRINPPEGSQAALKREAADSLHLWM 232
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
R + + +PL +TL+A ++ R + + + I
Sbjct: 233 SGRPRELAELQRRLAVPLGTFTLTLLAVPIARTSPR-GGVWGNLISAFLIYIIYENLQKI 291
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +G L + + + + ++L +
Sbjct: 292 SQGLLATGKLSVWTSYAGIYAVMLLATSVLLAR 324
>gi|157829030|ref|YP_001495272.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933754|ref|YP_001650543.1| hypothetical protein RrIowa_1403 [Rickettsia rickettsii str. Iowa]
gi|157801511|gb|ABV76764.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908841|gb|ABY73137.1| hypothetical membrane spanning protein [Rickettsia rickettsii str.
Iowa]
Length = 362
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 75/357 (21%), Positives = 145/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIY-VPFSFFLRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I+T G + L + + S S + I + I + T
Sbjct: 124 ISTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLSRVKVFT-KEETKAYNNLTMQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLINELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
>gi|238921310|ref|YP_002934825.1| hypothetical protein NT01EI_3454 [Edwardsiella ictaluri 93-146]
gi|238870879|gb|ACR70590.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 366
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + G ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + N + + +F+G K +++ +
Sbjct: 121 SPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVKDKKFQNVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ L + + K+ +Y + ++ + S
Sbjct: 181 GSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAM 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + +F++ + + ++ M L+ +S+ R +
Sbjct: 241 LDPNNADQ-----ASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G L P+ + L++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWAVNGFYLLLAVVL 345
>gi|159043739|ref|YP_001532533.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
gi|157911499|gb|ABV92932.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
Length = 380
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/346 (11%), Positives = 108/346 (31%), Gaps = 12/346 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + T +F L +++ ++ + ++ ++ A L+ +P
Sbjct: 1 MLARYDRYILGRLMVTFGFFTLIIVLIYWINRSIRLFERLSG-DGQGLALFAQLSLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I ++P + + SE V +A GIS ++++ P + ++ +L+
Sbjct: 60 YLIYLMLPLAAFASAVSTGNRMGSDSETVALQAAGISAFRIVRPALYMGVMAAALMLLLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + DL +Q D + + + + + +
Sbjct: 120 HLLVPMSRVAIADLEEQLADEVSARLLEPGKFQSPIDGVTVFVAEITGEGVLSKVLLSDQ 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVK---LKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ ++ + V L + + + L +
Sbjct: 180 RDPAEEVIYTANQALLVRSDTGPQLVMISGLAQFLRADGTLSTLQFEDFALGLGEVEVPE 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VS 295
+ +++ +S ++ + + P + ++ L+ S +
Sbjct: 240 DRVLRDLRGWDTARLLRADPADLESVGKSRGAFLSEAHRRLANPALAISTALLGFSALLV 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
FSR VA I + ++ + + + +S AA
Sbjct: 300 GGFSRFG-FWQQVAGAILALIVIQLSVNMSEEIAQSDA-----AAW 339
>gi|319944264|ref|ZP_08018540.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
gi|319742559|gb|EFV94970.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
Length = 369
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/344 (10%), Positives = 105/344 (30%), Gaps = 16/344 (4%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
++ L N+ S S L A I ++ + ++V
Sbjct: 17 VMFATLFTILVTTSLIRFLNRATSDRIAS-SDILPLIAFNAIGFIPVLLVLTVFLSVLMV 75
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
R SE+VI A G S+ + P ++ + V ++ + +L +++
Sbjct: 76 LARAWRDSEMVIWFASGQSLTAWIRPVMMFVLPYAAVVAAVTFVLSPWANQQIAELRERF 135
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR-KDAD 197
D + + ++ + F+ + + + R
Sbjct: 136 NQREDVSMVAPGQFRESTSSNRVFFVESMSPDKSTVSNVFVVQHNGPRMVVVASRGGHVK 195
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
+ + + L+ Y + + + E + ++++
Sbjct: 196 IEENGDRFLVLEDGRRYDGTWGTPEYSLMEFLRYGVRLDPKPVNTQIESVRGMATPDLMQ 255
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+ A + + + +P+ + + L+A +S R + + G+
Sbjct: 256 ----------LSSPAARGELAYRVGLPISVFVIALLAIPLSFVNPRLGS-SVNLVIGVLI 304
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
F + ++++S+ L + L + L++ + ++
Sbjct: 305 YFTYSNLNSVVRSWITQEKLSFGVGVWLTHALVLGLALYMFRKR 348
>gi|291279034|ref|YP_003495869.1| hypothetical protein DEFDS_0632 [Deferribacter desulfuricans SSM1]
gi|290753736|dbj|BAI80113.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 360
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 133/363 (36%), Gaps = 7/363 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+Y K YL + + L+ +I+ + + + N + ++P
Sbjct: 1 MKKFNKYLIKSYLNSLVAILIFILIIYTFFQVVQHTKYISRY-NTPFLNILIYDLMKIPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q+ P T +V L + +EL+ + G + Q+ F+ + L + + +
Sbjct: 60 SIYQVFPVATSAAIVVTMLKLIKNNELIAYLSFGGRLRQIAVLFLSVNFLFFLILLYYSD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I EKI + ++ ++ + ++ I I + ++ T
Sbjct: 120 AINPKIEKIRAKYKDEKIF--FQKHTEKLTVTDFYFKDKESIISIDLINFDKKEFDGVTI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
DK I ++ + N+ + + + + + L I +
Sbjct: 178 YEKDKDTISIVKRAKKAKYLGNNIWEFQDFKIFDVKKIPTLLKIYDKYKLKSKILTKFIK 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ SF E+ + + +Y I +PL+L+ +T++ +++
Sbjct: 238 IKPDEPKKLSFKELSRVIKVYESKG-LSAESFRLIYYNKIAVPLILIVLTILLLPLTITI 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
SRS Q + A + + + ++ S GK+G++ P A IL ++ILL K
Sbjct: 297 SRSYQYIKVAAKSLSVTIIFWVSYSVFYSLGKNGVINPFLANFSLHILFFIFGMIILLSK 356
Query: 359 EDG 361
E G
Sbjct: 357 ERG 359
>gi|85716329|ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
gi|85696845|gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
Length = 390
Score = 84.4 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 120/360 (33%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + + L+ ++++ + + +I + + +P+
Sbjct: 1 MGSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITSLAIPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 60 LVLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G + + + + + ++ I ++ P + F
Sbjct: 120 YLAPDGMRRLKRWDAEITADVLANVLQPGRF---AQLDPNLTIRIRERQPGGQLAGIFID 176
Query: 182 ITIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++ D + + L++ + + + ++
Sbjct: 177 DRRNSDERLSIIADHGTVMKNDKGSFLVLEDGHLERFETGKREPAMVAFDRYAFDMSKFS 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ R +E+I ++ + + + P+ + +
Sbjct: 237 NRGHDVVYGIRERYLWELIVP-DQNDPVVQQLQGQFRAELHDRFTAPIYPFVFAALTFAF 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L R+ + + G ++ + + + P+AA L ++L ++ I +
Sbjct: 296 -LGTPRTTRQSRNFSMGAAIA-AVFGLRMAGFALSVMTVKSPLAALLQYLLLFGAIGISL 353
>gi|144897578|emb|CAM74442.1| conserved hypothetical protein, membrane [Magnetospirillum
gryphiswaldense MSR-1]
Length = 373
Score = 84.4 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/361 (13%), Positives = 115/361 (31%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI RYF + L+ ++++ + + S++ L +P
Sbjct: 1 MTGI-TRYFLRQLAVGMLFVSAALTCVLWLTQSLRLIEMIVN-QGISVTTFLKLTGMLMP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IIP V + + LN ELV+ RA G+S W L P ++ + + I ++
Sbjct: 59 SFLVVIIPIALFAVILFTYNKLNTDRELVVLRAAGLSNWALAKPALILAGIATIMGYVLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + ++ +++ + + +
Sbjct: 119 VWIIPQTVQNFREVQWSIRNDISNLLLQEGTFNKFGKGVTIYVRTRTSEGELLGLLVHDK 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDG 236
+ + + + + ++ +S T+++ +
Sbjct: 179 RSPTKPVTLMAEKGALVFTETGPRILMVNGNRQQLPDGTGQLSVLNFDSYTVDLSMSGGD 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--V 294
S E++ + + + RA+ + + + PL + TLIA + +
Sbjct: 239 NGSRFRDARELSMAELLN--ADEAQMGVTDYRRAKGELHQRLTSPLYSLGYTLIALATLL 296
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ F R Q + + I + + + + S + ++ V+ + +
Sbjct: 297 TAGFDRRGQT-VTILTAIGLMVGVQAAVLGLANLSASKPIFLPFLYVLAVLPLVLGPWWL 355
Query: 355 L 355
L
Sbjct: 356 L 356
>gi|301156462|emb|CBW15933.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
Length = 363
Score = 84.4 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/351 (15%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K N +M SN +FI + ++
Sbjct: 121 SPWAIQKQAAIVEDAKANPTMGALASGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K ++ + +L + N +V+ Q + D +Q +
Sbjct: 181 GQTKPSVVTAEKGELKALPNG----DQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGH 236
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + ++SF A+ + ++ I + L + M LIA +S R +
Sbjct: 237 QETNSESDEAAELSFEQLLKDKSAA-AKAELHWRITLILAVPLMALIAVPMSKVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + KS G + L + I + L I++
Sbjct: 296 FAK-ILPALLLYLIYFLLQSSFKSAGGADKLDAGLLMPLVNIAFLILGIVL 345
>gi|206577932|ref|YP_002240777.1| putative permease [Klebsiella pneumoniae 342]
gi|206566990|gb|ACI08766.1| putative permease [Klebsiella pneumoniae 342]
Length = 365
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q S+ +FI + + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ +L+ + + ++ + ++ + +
Sbjct: 181 GNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVT 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ H RA + ++ + + M L+ +S+ R +
Sbjct: 241 SDPDDTEQM-----DMRTLWQTHTDRARAELHWRFTLVATVFIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + +L +L++L+
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMDLAIWMWAINLLYFALAVLL 345
>gi|206602447|gb|EDZ38928.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
'5-way CG']
Length = 378
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/355 (14%), Positives = 102/355 (28%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY F L + LL ++L+ + + SI L P
Sbjct: 1 MKIIHRYLFLELLPPFVIGLLVLVVLILTQQTL-MIMNLLVNKGLSIPTVLRLVMMIFPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IIP L + F L E+ +A GI + +LL P V+ + L + + +
Sbjct: 60 FLTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++I + + ++
Sbjct: 120 KAEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEG 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I+ R+ + L ++ + + + +
Sbjct: 180 KGKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTIFGKSAG 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S + E+ KK+ S R Y P + + + RS
Sbjct: 240 ATEKSPTIQELEKKIGRS-SKPDVSLLRELEDRYKNYTYPFSCLIFAFLGIPFGIYAKRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ V F Y + T+ +L P A+LIP + ++ +L+
Sbjct: 299 GKLAGFVFATASVIF-FYILNTVDDLMVARRLLKPFVASLIPDLALGAVMGFLLI 352
>gi|145300687|ref|YP_001143528.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853459|gb|ABO91780.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
Length = 370
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 115/347 (33%), Gaps = 6/347 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY F+ LKT L L +++ +I + + L +
Sbjct: 1 MTVIVFRYLFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAAD-GEVPTRLVSTLLLLNLS 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P + + L SE+ + A+G S ++ +V ++L
Sbjct: 60 NMALLMLPISLFLAILFAHGRLYAESEMTVLHAVGFSHRFVMRCAMVLALLTAAVAAFNT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ +I ++K + +M++ + +++ + + +
Sbjct: 120 GWIAPQAKEREYQVIDEFKADPGISFLQAGRFMELDK--GRLVAYIQELNDKASLLQKIF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K A ++ D L+ + R ++ I +
Sbjct: 178 VLQRSHDGKPPSVVVATEGVVTLDSNGLQWLTLKDGSRYEGHFSTRQFQISEFDEYSLVI 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+Q RS + + + + + I +PL ++ +T + ++ R
Sbjct: 238 RQQEMERSNRK--AAARPTVDLLGTQDNGMMAELQWRISLPLSILVLTFLVVPLARVNPR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+ + I + +++ +S SG L + ++
Sbjct: 296 QGRYAK-LLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLVY 341
>gi|254488881|ref|ZP_05102086.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
gi|214045750|gb|EEB86388.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
Length = 376
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/366 (12%), Positives = 113/366 (30%), Gaps = 14/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY +L +F L + + ++ + +++ + +P
Sbjct: 1 MSK-FDRYMLSQFLTLFSFFALVLVAIFWINRAVILFDRLIG-DGQTALVFLEFTVLGLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I ++P T V + SEL + +A G W+L P I + + ++
Sbjct: 59 RLITTVLPIATFAGAAYVINRMTSESELTVLQATGTGPWRLARPVFAYGICVALMMSVLT 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK------ILPENH 174
+ + + + N + ++ ++ + +
Sbjct: 119 HVLVPMTKAELNQREAEISQNVTARLLTEGTFLHPTSKVTFYTRLIGNDGVLRDVFLSDR 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D I + ++ + I+ + + +V Q + +I +
Sbjct: 179 RNPDEGVIYTAAEAYLVRNGNGTTLIMVDGLAQRLQVEGKQL--ATAKFRDFSFDISALV 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS- 293
S+ S ++++K + + PL + +I +
Sbjct: 237 SNSTDESQSIDSMVTFDLLKNWDDLAAKTGQTHGDIAEEVNARFADPLFCIIAAMIGYAT 296
Query: 294 -VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ FSR R IV + T++++ + PV +P ++ L +
Sbjct: 297 LIMGGFSRFGVWREIVIAFGLLIAIDGFSSTLVETVRQDASRWPVL--YVPSLVGAMLVL 354
Query: 353 LILLQK 358
++ Q
Sbjct: 355 AMIWQT 360
>gi|16767724|ref|NP_463339.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|167991268|ref|ZP_02572367.1| putative permease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|16423044|gb|AAL23298.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|205330408|gb|EDZ17172.1| putative permease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261249567|emb|CBG27434.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996823|gb|ACY91708.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160963|emb|CBW20497.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915575|dbj|BAJ39549.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|323132816|gb|ADX20246.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|332991288|gb|AEF10271.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 366
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLFIESVDGSDFHDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L PV ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 345
>gi|315634608|ref|ZP_07889892.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
gi|315476556|gb|EFU67304.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
Length = 364
Score = 84.0 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 122/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GQVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+ G +
Sbjct: 61 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGSKILVKVVLILSLFTGALAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +I++ K N + +M +N +FI + N+++ T
Sbjct: 121 SPWAINKQVAIIEEAKANPNMGALSAGQFMTANNSDFVLFIDDIQENQINNVYVFQTQPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
K +I + +L + N L+ + + + +
Sbjct: 181 GQTKPSVIVAEQGELKSLPNGDQILRLQNSDRFEGTAILPDFRITHFDEYQAYLGHKAVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S +++ +T+F++ + + L + M L+A +S
Sbjct: 241 DDSNEAGEMSLMQLLN----------ADTPAMKTEFHWRLTLILAVPIMALLAVPLSRVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + V + + + + + +KS G +G L + L+IL+
Sbjct: 291 PRQGRFAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDASLFMPLVNGGFFLLAILL 345
>gi|226357375|ref|YP_002787115.1| membrane protein; permease [Deinococcus deserti VCD115]
gi|226319365|gb|ACO47361.1| putative membrane protein; putative permease [Deinococcus deserti
VCD115]
Length = 347
Score = 84.0 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/358 (11%), Positives = 99/358 (27%), Gaps = 12/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL R+ + L+ + L L+ ++ + + + +P
Sbjct: 1 MPSILTRFVLREVLRWYAAGAALFLTLQMTDVLSTTVAKLLTY-DPPLWKAVAAFGAILP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ + + ++ F + R SE A G+ L+ P + ++G+
Sbjct: 60 TILNRTLVLAVPFAILLAFSRMQRDSEFKAILAAGVRPLSLVWPLLAPFAVVGLIAGYNA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +G K + + + + +
Sbjct: 120 GTLVPAGLKQWDRAWYRIYEQTPPPPTQEHYTFAPAGALYYASRIVNAKGGDRAELTGVM 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + L+ + G+ P K + + D Q
Sbjct: 180 VQRGEE----TLTATSGVWDAKARTWTLQNAWVVRPGQPPRQKTGALV--LPQRDTLQPP 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S ++ + + Y L V + A +
Sbjct: 234 PAEGKQLSNAQLRAGLKRE-----LSPAQRRDYQYQLATRVADPVTPVVFALAAGALGLL 288
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
A + Y + + ++G + P AA +P + + L+ ++ +
Sbjct: 289 IRSRATAFAAVLVFIASFYILWSTAPQLARAGAMDPALAAWLPNLTFLLLAGVLAWRL 346
>gi|83312813|ref|YP_423077.1| permease [Magnetospirillum magneticum AMB-1]
gi|82947654|dbj|BAE52518.1| Predicted permease [Magnetospirillum magneticum AMB-1]
Length = 368
Score = 84.0 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/353 (13%), Positives = 104/353 (29%), Gaps = 11/353 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ L ++ ++++ + SI L +P + IIP
Sbjct: 3 RQMLVGMIFVSAALACVLWLTQSLRFVEMIVNK-GLSIGAFLKLTILLMPGFLVVIIPIS 61
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
V + + L ELV+ RA G+S L P V+ + + ++ I +
Sbjct: 62 LFAVVLFTYNRLIADRELVVLRAAGLSHLALARPAVILGLAVSAVGYMLSCWIIPVTVRS 121
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
++ +++ + + + +
Sbjct: 122 FHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRHAQRPVTLM 181
Query: 191 IHRKDADLAIIYNDKVKL----KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
R + + ++V + ++ T++
Sbjct: 182 AERGALVYTEQGPRVLMVNGNRQEVTPGTGKLSLLYFDNYTVDFNTATGAKHDRVRDARE 241
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEFSRSNQP 304
RS E++ S R +++ + + PL + L+AA+ ++ F R Q
Sbjct: 242 RSTLELLAIDSSMENKGEL--RRFKSELHSRLTSPLYSLGFPLLAAAVLLTSGFDRRGQT 299
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + + SG L V I L I+L + +L +
Sbjct: 300 AQ-VITATALMVAVQALALGASNLS-SGNLAFVPLIYINAALPIALGLWVLAR 350
>gi|168464639|ref|ZP_02698542.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195632768|gb|EDX51222.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 366
Score = 84.0 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKTVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L PV ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 345
>gi|317046771|ref|YP_004114419.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
gi|316948388|gb|ADU67863.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
Length = 396
Score = 83.6 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/351 (10%), Positives = 113/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 32 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +L I + + +
Sbjct: 91 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKSAMILMLLTSIVAAINVIWL 150
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + S+ +F+ + +++
Sbjct: 151 GPWSSRYQDEVTQNAKANPGAAALAAGQFQTSSDGNAVLFVEDVRGNTFGNVFLAQLRPK 210
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + ++ + ++ +
Sbjct: 211 GNARPSVVLADSGHMEQRPDGSQIVTLDKGTRFEGTAMLRDFRITDFVDYKALIGYKQAV 270
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + ++ + + + + ++ M L+ +S+ R +
Sbjct: 271 -----LDPNDAEQADMRSLWQSNDPTFTAELNWRLTLVFSVLIMALMVVPLSVVNPRQGR 325
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + +KS G P + ++L++ +
Sbjct: 326 V-LSMLPAMLLYLIFFLLQSSLKSNSAKGKFDPTLWMWVVNFAYLALAVGL 375
>gi|16763279|ref|NP_458896.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144758|ref|NP_808100.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|62182905|ref|YP_219322.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161617773|ref|YP_001591738.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551265|ref|ZP_02345020.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168232819|ref|ZP_02657877.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168234609|ref|ZP_02659667.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168244032|ref|ZP_02668964.1| putative permease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168262478|ref|ZP_02684451.1| putative permease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168821096|ref|ZP_02833096.1| putative permease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194445077|ref|YP_002043718.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194450320|ref|YP_002048502.1| permease [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194468992|ref|ZP_03074976.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194736994|ref|YP_002117399.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250300|ref|YP_002149398.1| putative permease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197262941|ref|ZP_03163015.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198242439|ref|YP_002218342.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200386849|ref|ZP_03213461.1| putative permease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927295|ref|ZP_03218497.1| putative permease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205355210|ref|YP_002229011.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859604|ref|YP_002246255.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213022334|ref|ZP_03336781.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213427635|ref|ZP_03360385.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213618569|ref|ZP_03372395.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650368|ref|ZP_03380421.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|238910634|ref|ZP_04654471.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289824526|ref|ZP_06544085.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|25309681|pir||AF1061 probable inner membrane protein STY4817 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505587|emb|CAD06939.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29140397|gb|AAO71960.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62130538|gb|AAX68241.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161367137|gb|ABX70905.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403740|gb|ACF63962.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194408624|gb|ACF68843.1| putative permease, YjgP/YjgQ family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455356|gb|EDX44195.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194712496|gb|ACF91717.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214003|gb|ACH51400.1| putative permease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197241196|gb|EDY23816.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291917|gb|EDY31267.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936955|gb|ACH74288.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603947|gb|EDZ02492.1| putative permease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204323960|gb|EDZ09155.1| putative permease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205274991|emb|CAR40065.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323849|gb|EDZ11688.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205332944|gb|EDZ19708.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205337037|gb|EDZ23801.1| putative permease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205342368|gb|EDZ29132.1| putative permease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205348722|gb|EDZ35353.1| putative permease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206711407|emb|CAR35786.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|320088910|emb|CBY98668.1| Lipopolysaccharide export system permease protein lptF [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|322615642|gb|EFY12562.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618702|gb|EFY15591.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322621885|gb|EFY18735.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627610|gb|EFY24401.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322630916|gb|EFY27680.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637865|gb|EFY34566.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642323|gb|EFY38929.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322643902|gb|EFY40450.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322651022|gb|EFY47407.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322656725|gb|EFY53013.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659851|gb|EFY56094.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322661938|gb|EFY58154.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666314|gb|EFY62492.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672733|gb|EFY68844.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676163|gb|EFY72234.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680647|gb|EFY76685.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322684459|gb|EFY80463.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322717408|gb|EFZ08979.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323194204|gb|EFZ79401.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197349|gb|EFZ82489.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201533|gb|EFZ86597.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206047|gb|EFZ91009.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213058|gb|EFZ97860.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323215429|gb|EGA00173.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323219413|gb|EGA03898.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227717|gb|EGA11871.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323228887|gb|EGA13016.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236501|gb|EGA20577.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239998|gb|EGA24045.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241955|gb|EGA25984.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247896|gb|EGA31833.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251466|gb|EGA35337.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323258168|gb|EGA41845.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323263686|gb|EGA47207.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265718|gb|EGA49214.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270162|gb|EGA53610.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326630368|gb|EGE36711.1| putative permease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 366
Score = 83.6 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L PV ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 345
>gi|126031980|gb|ABN71556.1| putative permease [uncultured bacterium]
Length = 402
Score = 83.6 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 123/359 (34%), Gaps = 7/359 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY F+ L + A L+ + + ++ + + +S + A +P
Sbjct: 8 DRYIFRLVAMPMLAVFVIAASLLVLDKMLKLFDFVATEGG-PVSVVFRMLANLLPEYASL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ + F L +SEL + RA+G+ +LL + ++ L ++++ +
Sbjct: 67 AIPIGLMLGILFAFRKLATSSELDVMRAVGLGYGRLLRVPFIMAVGLAGVNLVIVGYLQP 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + + + ++ + +
Sbjct: 127 LSRYYYEQLQFELRSGALGASIKVGEFTTLKDKIALRIERSEDEGRKLMGIFVRVADDQG 186
Query: 186 KKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R+ LA+ N + ++V+ G P + ++PI + ++F
Sbjct: 187 QVLSVSAREGRFLALKDNPDTIVFRLSDGQIVQDSPGVTPRVLTFSRHDLPIDLPALERF 246
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP-LMLVAMTLIAASVSLEFS 299
++ Y + + + + R + F + ++++ + + A
Sbjct: 247 RQRGGGEREYLLPELLRLGWNDEVPLTQRNINRANFNYRMVEVVMMLLLPLLAVALAVPP 306
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + V I + + +S G + A P ++ ++ + + +
Sbjct: 307 KRSTSALGVFVSIVMVVAYHKVNEYGQSIAALGKSGVLLALWGPFVVFAAMIVWMYWRL 365
>gi|124514758|gb|EAY56270.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
Length = 378
Score = 83.6 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 101/355 (28%), Gaps = 3/355 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY F L + LL ++L+ + + SI L P
Sbjct: 1 MKIIHRYLFVELLPPFVIGLLVLVVLILTQQTL-MIMNLLVNKGLSIPTVLRLVMMIFPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IIP L + F L E+ +A GI + +LL P V+ + L + + +
Sbjct: 60 FLTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++I + + ++
Sbjct: 120 KAEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEG 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I+ R+ + L ++ + + + +
Sbjct: 180 KGKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTIFGKSAG 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ E+ K++ + R Y P + + + RS
Sbjct: 240 TTAKPPTIRELENKIA-GSPKPDVSLLRELEDRYKNYTYPFSCLIFAFLGIPFGIYAKRS 298
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ V F Y + T+ +L P A+LIP + ++ +L+
Sbjct: 299 GKLAGFVFATASVIF-FYILNTVDDLLVARRLLKPFVASLIPDLALGTVMGFLLI 352
>gi|110680306|ref|YP_683313.1| hypothetical protein RD1_3119 [Roseobacter denitrificans OCh 114]
gi|109456422|gb|ABG32627.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
Length = 375
Score = 83.6 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 111/358 (31%), Gaps = 9/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L +F L + ++++ + +++ S A +P +I
Sbjct: 4 LDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDELIS-DGQSALVFLEFTALGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V +N SEL + +A G +L P +V +++ + ++ + +
Sbjct: 63 TVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGLIVFLMASMLHHVLM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW----EDFT 180
++ + N + ++ S ++
Sbjct: 123 PLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQEIDDDGVLRDVFLSDRRSVE 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I +D + + +++ + + +I +
Sbjct: 183 EGVIYTAAHAYLIRDDERTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDVSQ 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
+ ++++ ++ + F+ I PL + LI S + +
Sbjct: 243 RLDPDKMTTFQLLTPWDELSRETGRSIGKITQSFHARIADPLFCIVAALIGFSTLMIGGF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG-ILLPVAAALIPVILTISLSILILL 356
V + + + ++S + L P+ +P ++ L I +L
Sbjct: 303 SRFGVWREVGVAFVLLVAIDGLRSTLQSPVRRDPELWPLL--YLPTFISALLVIAMLW 358
>gi|163792838|ref|ZP_02186814.1| Predicted permease [alpha proteobacterium BAL199]
gi|159181484|gb|EDP65996.1| Predicted permease [alpha proteobacterium BAL199]
Length = 369
Score = 83.6 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 122/361 (33%), Gaps = 23/361 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L ++ ++ ++++ + + I L +P +
Sbjct: 3 ITRYLAGQILTAMVFIVVSMTCVIWLSQSLRFVDLIVNR-GLPIPSFVYLTLMLMPTWLS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V+ L ELV+ A G+S +L P +V ++ + T L+ +
Sbjct: 62 IVLPIAAFAATVFVYNKLTNDRELVVLSAAGLSPLRLAGPAMVVAVATMLATYLMTLYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWED 178
+ +L Q + N D + + + ++ I+ +
Sbjct: 122 PMSYRGFKELQFQIRHNFDHLVLREGEFRSIGDGLTVYVRAREDTGQLAGIVVHDQSNAK 181
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ +I + ++ N + + V + + T+++ + Q
Sbjct: 182 KTVTLVAERGALITAPEGPRVVMANGSRQERDVE--TGRVSVLYFDRYTIDLGAMREEVQ 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE- 297
+ +++ ++ + + + + PL+ +++T I +V L
Sbjct: 240 RTIRDQNELFIDDLLHPTEQ--ITDPKNFDEYIAEGHQRLTSPLLALSLTAIGVAVLLSG 297
Query: 298 -FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----LPVAAALIPVILTISLSI 352
FSR Q I+ + +G G ++ V VI+ L++
Sbjct: 298 EFSRRGQTIRIITAVLLAGCAE------AMGLGSKYLVVRYPSMVPIMWFAVIVPFLLAL 351
Query: 353 L 353
Sbjct: 352 A 352
>gi|254669827|emb|CBA04201.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 210
Score = 83.6 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 4/199 (2%)
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
A K P++ + DK + + + +LK + G ++
Sbjct: 11 CWALKSGPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEV 70
Query: 224 N---STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ I +K + + S E+ + ++N + ++ +V
Sbjct: 71 SIAAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVY 129
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P M L+A + + + +R + + GI G + + + + P A
Sbjct: 130 PAAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAG 189
Query: 341 LIPVILTISLSILILLQKE 359
+P I L++ ++ ++E
Sbjct: 190 ALPTIAFALLAVWLIRKQE 208
>gi|161505034|ref|YP_001572145.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866381|gb|ABX23004.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 366
Score = 83.6 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDSDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L PV ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWTVNLIYLALAIGL 345
>gi|209885016|ref|YP_002288873.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
gi|209873212|gb|ACI93008.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
Length = 385
Score = 83.6 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/365 (11%), Positives = 110/365 (30%), Gaps = 15/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G + Y + L + L L+ +++V + + ++ + +P
Sbjct: 1 MLGSIDAYVVRSTLLSFLIVLISLTGVIWVTQALRGID-LMTAQGQTVLVFLGITGLAIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I P L+ L SE+++ A G+S W+ L PF+ ++++ +
Sbjct: 60 VLALIIAPLAILLAVTHTLNRLATDSEIIVMNAAGLSPWRFLRPFMYSTVIVACLISFLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + + + ++++ + + +D
Sbjct: 120 VFLAPECLRALRRWHTEIGADVLANVLQPGQFIRLDKLVLRVQERRPGGVLVGVFIDDQR 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMD 235
+ I + + L ++ D S ++
Sbjct: 180 NPAERIN--ITAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQ 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q ++ R E+I + + + + ++ L ++A +
Sbjct: 238 APQTYNYNARERFISELISPPKDDQVA-QRSLGQFRAELHDRLLAGLYPFVFVILAFAF- 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLY--TIITIMKSFGKSGILLPVAAA-LIPVILTISLSI 352
L R+ + A + +L + S A ++ +LS
Sbjct: 296 LGPPRTTRQGRNFAISMLILVVLVVRIGGYACSTIAVSQ--PAAIAVQYAMLLAVAALSG 353
Query: 353 LILLQ 357
++++
Sbjct: 354 WMIVK 358
>gi|221211523|ref|ZP_03584502.1| putative membrane protein [Burkholderia multivorans CGD1]
gi|221168884|gb|EEE01352.1| putative membrane protein [Burkholderia multivorans CGD1]
Length = 326
Score = 83.2 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/325 (16%), Positives = 97/325 (29%), Gaps = 26/325 (8%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 1 MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IIP L+ I VF + SE I R G++ Q L + + L I T L+
Sbjct: 60 RFYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHI 175
+ +++ + Q W++ + Q F+ + P++ I
Sbjct: 120 FVGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------------------YG 217
K R LK V E + Y
Sbjct: 180 SNVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYR 239
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ L + S + + + N R + +
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLR-ENHQDTQRYDIALWRK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSN 302
++ P + M +++ + +R+
Sbjct: 299 LLYPFAVFVMLVLSLPFAYLHTRAG 323
>gi|254455252|ref|ZP_05068681.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082254|gb|EDZ59680.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 325
Score = 83.2 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 117/322 (36%), Gaps = 2/322 (0%)
Query: 39 QMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI 98
+ + S L+ P +I +++PFI L+ + F L +E+ I + G+
Sbjct: 5 EFFKEIEVSSGFPIFLSLLNSPSMIFEMLPFIFLITTQLFFIKLFNNNEIEIFKYSGLKN 64
Query: 99 WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
+L F + I GI ++ + + ++ ++ + + I +
Sbjct: 65 TSILKIFSLIVISSGIILTIIFYNFSAVFKNFYLEEKTKFTSDSKYLAVITKNGLWIKDE 124
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
+ E++ + DK K+I +D I + + V Y
Sbjct: 125 IDEKIYIVNSSKIESNFLINNFITEFDKDYKVIRNLKSDKINIQSTDWQAFNVKVYD-KN 183
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
K + Q +S SFY++ + + + K + QF ++
Sbjct: 184 NYEIKKQLNIKTNFDYKRIQTLYSNLSSLSFYQLFE-LRKNYKKLNYSLIEINLQFLKIL 242
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL L + + ++ + R + ++ G+F ++Y I G + + +
Sbjct: 243 SFPLYLFLVAIFSSLIMFRVKRLHNTTFKISLGLFFSVIIYYINNFFMVMGNTERISLIF 302
Query: 339 AALIPVILTISLSILILLQKED 360
A IP+IL ++ L+L + +
Sbjct: 303 AIFIPLILLSIINSLMLNKINE 324
>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
Length = 381
Score = 83.2 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 16/363 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ L +G LV++ + + S++ L +P
Sbjct: 4 LDRYLFRQLGIGLLAVTIGLAALVWLTQSLRFIELVLDR-GLSLAVFVELTGLLLPSFFA 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P T VV + + LN ELV+ RA G+S WQL P ++ + L F + + +
Sbjct: 63 VILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRPALLIATLATGFCLFLQLWLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ + + + + I
Sbjct: 123 PVSHAAFRSWQFEIRNEMAAILLQEGVFSSLGDDLTVYARRREADGTLRGILVHDMREPG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----------QYGRIPIDKNSTTLNIPIKM 234
+ + L E + + +NS L +
Sbjct: 183 TPVTIMAQEGRLVSTPAGPRVILLNGQREQLEPATATHPARLSVLSFAENSVDLASSSRS 242
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL--IAA 292
+ R E++ + + + + + P ++M + +A
Sbjct: 243 PVDVARNRDSRERFVPELLNP-DPAENLPERDIRKFRAEGHQRLASPFTALSMAMVGLAV 301
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+++ F R R +L + I + +P+ + + + +
Sbjct: 302 ALASGFRRHGDWRPAAIGVALVVALLALGLAIGNLAARDNRYIPLI--WLHTLGPVLGAA 359
Query: 353 LIL 355
+L
Sbjct: 360 WVL 362
>gi|284799561|ref|ZP_06390218.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797389|gb|EFC52736.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 195
Score = 83.2 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 70/192 (36%), Gaps = 4/192 (2%)
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---T 227
P++ + DK + + + +LK + G ++ ++
Sbjct: 3 PDHTLLGIKIWQRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEEN 62
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
I +K + + S E+ + K+N + ++ +V P+ M
Sbjct: 63 WPISVKRNLMDVLLVKPDQMSVGELTTYIDHLEKNNQ-NTQVYAIAWWRKLVYPVAAWVM 121
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A + + + +R + + GI G + + + + + P A +P +L
Sbjct: 122 ALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLF 181
Query: 348 ISLSILILLQKE 359
L++ ++ ++E
Sbjct: 182 ALLAVYLIRRQE 193
>gi|251791280|ref|YP_003006001.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
gi|247539901|gb|ACT08522.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
Length = 370
Score = 83.2 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 124/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL ++ S+L + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKSVLLKAALLLSLLTASLATANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ Q + N + Q + +F+G ++
Sbjct: 121 SPWSSRHQDEVLAQARANPGMASLAEGQFQQTQDGNSVLFVGKVNSGDFERVFLAQLHPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ +A + + +Y R + +
Sbjct: 181 ENTRPSVVVADRGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQPVA 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + ++ F++ + + L ++ M ++ +S+
Sbjct: 241 VDPSNVEQMSLKTLWESSDIAARAE----------FHWRLTLILSVLVMAVMVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G L P+ + ++ ++L++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLALAVIL 345
>gi|119513620|ref|ZP_01632629.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
gi|119461725|gb|EAW42753.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
Length = 385
Score = 83.2 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/374 (12%), Positives = 128/374 (34%), Gaps = 22/374 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L+ + I+ I ++ Q + + L ++P I
Sbjct: 12 LLERYLISELIPPLLFSIAIVTIVAESIGISFEQFKFLIERQLTFEILIYLHLLKLPEFI 71
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ I + L+ TSE++ + G+S+ +L+ P V+ + LL + I
Sbjct: 72 VFAAPIAVLLATIFTYKKLSNTSEIIAIHSCGVSLDKLVYPAVMVAALLIPVLFIFNEVI 131
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + + Q + + + A++ ++ ++ + +
Sbjct: 132 VIPANYKAAITLEKAMNINRLYFQKNDIFYQQIDNENTLDSLAQQNYLKHLLYAERFADG 191
Query: 184 IDKKNKIIHRK-----------------DADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
++ ++ R Y + RI D
Sbjct: 192 QMQQVTLLMRDSEKLKVIIKSRFAECYGQQKFCYFYEGVKNIINADGSYGERIKFDTMPL 251
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLV 285
L + + + +++ +++ K+ N+R+ + +P+
Sbjct: 252 YLPNIALQLQIDQETLDNREMNIFQVYQRLLVFQKAGDRRNFRSLQVNIQERFTLPVSCA 311
Query: 286 AMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
L+ +++ + R+ + GI LY I ++ ++ + +P
Sbjct: 312 VFALLGSAIGINLQPRTRYNSFSLTLGIIL---LYDAIQVIAKIFIISEIISFSWIWLPN 368
Query: 345 ILTISLSILILLQK 358
I+ ++ + +L++K
Sbjct: 369 IVGTTVGVYLLIKK 382
>gi|78356991|ref|YP_388440.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219396|gb|ABB38745.1| permease, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 397
Score = 83.2 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 54/376 (14%), Positives = 128/376 (34%), Gaps = 19/376 (5%)
Query: 1 MPGILWRY--------FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA 52
M G L+R+ FK + L + L+ + + ++ + + A
Sbjct: 1 MEGTLFRFHITLLQKQLFKELVSLFGLCLGSLLSLILIGRML-QLRELFLGLDLNALDMA 59
Query: 53 VLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L PL + IIP ++ + F ++ ELV +A G+S++QLL ++ +L
Sbjct: 60 TLFVYLSPLFLTLIIPIACMLSVFLAFLRMSTDRELVALKAGGLSLFQLLPAPLLFCLLC 119
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
G+ + + G I + + K + Q +
Sbjct: 120 GLLNLYISLSGVAWGMGNFRHTIMEIANTRAKIVLQPGVFNQTVPGLTVFARTVDNSSGK 179
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRI-----PIDKNS 225
+ + I+ + + + L Y+ + +
Sbjct: 180 LGHVLVEDNSRDETSILILAPRGQLRSDEQRGELVFILHNGKIYRQQEDSVSVLDFNDYT 239
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF--YFLIVIPLM 283
L++ G + S+ E+ ++ N+ + V+P+
Sbjct: 240 VRLDLGQIFKGVSLGKVKPKELSWSELRSIGPDHPEARRDSNFLRKVHVELQKRWVLPMA 299
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ + L A ++ F ++ + + + YT++++ S G+SG + P +P
Sbjct: 300 CLVLGLFAMPLACAFQGLDKQ-FGILLALGMFLIYYTMLSVGLSTGESGTVPPAVGLWMP 358
Query: 344 VILTISLSILILLQKE 359
++ +++ + L + E
Sbjct: 359 NLIFLAVGLFWLDRAE 374
>gi|197105168|ref|YP_002130545.1| hypothetical protein PHZ_c1705 [Phenylobacterium zucineum HLK1]
gi|196478588|gb|ACG78116.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 378
Score = 83.2 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/361 (10%), Positives = 109/361 (30%), Gaps = 7/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L + L + + + + S + +P
Sbjct: 1 MRLIDRYLLRQLLGPVILATLALTGVALLSQTLSGLDLIVNQR-QSALVFLKVTLLAMPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++P V +V L+ E+V+ A G+S W++++P + + + +L+
Sbjct: 60 LINMVLPIAVFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAIRLACTVAFLALLMNL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + Q + + + + + G +++
Sbjct: 120 WVQPAAYREMRRELFQVRTDLASTLVREGEFTEPAPGLTVYAQGVDGAGNLENLFIHQMR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + ++ ++ + T +
Sbjct: 180 DDGSATTYTAEQGRVGRSQGRP-VLVMRNGSNQEFSSTGVLNYLTFDEYIFDLSALTSSD 238
Query: 242 EQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ + + + I PL +A +A S +
Sbjct: 239 ELVHYKPSDRYPHELFFPDLQQDWERRNRLDLLAEGHARISSPLYNIAFMAMALSAIIGG 298
Query: 299 SRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S +A + ++ + +++ + L V LIP + +L+ + +
Sbjct: 299 GFSRLGYGRRIAAMGAAAAIVRILGFQVQAASEDAAWLNVFQYLIP-LAATALAFRSIFR 357
Query: 358 K 358
+
Sbjct: 358 Q 358
>gi|163735795|ref|ZP_02143224.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
gi|161390881|gb|EDQ15221.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
Length = 375
Score = 83.2 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/358 (12%), Positives = 110/358 (30%), Gaps = 9/358 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L +F L + ++++ + +Q+ S A +P +I
Sbjct: 4 LDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDQLIS-DGQSALVFLEFTALGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V +N SEL + +A G +L P +V +++ + ++ + +
Sbjct: 63 TVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGVIVFLMASVLHHVLM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + N + ++ S ++
Sbjct: 123 PLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQQIDDDGVLRDVFLSDRRHVE 182
Query: 185 ----DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+D D + +++ + + +I +
Sbjct: 183 EGVIYTAAHAYLIRDEDRTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDVSQ 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEF 298
+ ++++ ++ F+ I PL + LI S + F
Sbjct: 243 RLDPDRMTTFQLLTPWDQLSRETGRSIGTISQSFHARIADPLFCIVAALIGFSTLMIGGF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR R + + + T+ + L P+ +P ++ L I +L
Sbjct: 303 SRFGVWREVAFAFVLLVAIDGVRSTLQSPVRRDPELWPLL--YLPTFISALLVIAMLW 358
>gi|15893122|ref|NP_360836.1| hypothetical protein RC1199 [Rickettsia conorii str. Malish 7]
gi|238650591|ref|YP_002916443.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
gi|15620329|gb|AAL03737.1| unknown [Rickettsia conorii str. Malish 7]
gi|238624689|gb|ACR47395.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
Length = 362
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S + I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKAYNNLTMQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLINELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
>gi|56416250|ref|YP_153325.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197365173|ref|YP_002144810.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56130507|gb|AAV80013.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197096650|emb|CAR62265.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 366
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K + Q +N +FI + + ++
Sbjct: 121 GPWSSKHQDEVLAEAKATPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L PV ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 345
>gi|52842836|ref|YP_096635.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629947|gb|AAU28688.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 333
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/326 (13%), Positives = 103/326 (31%), Gaps = 2/326 (0%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
+ N+ + L +P ++ ++P V ++ + L SE+ +
Sbjct: 4 QFIQYLNRAAS-GSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVL 62
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
RA G QLL + ++ + +V+ + I LI+ Q
Sbjct: 63 RACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGR 122
Query: 152 WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ I++ QQ ++ + ++ + AD A + ++
Sbjct: 123 FHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGEEY 182
Query: 212 VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ Q G+ + ++ + + H+ +
Sbjct: 183 IVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLKKA 242
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ + I IPLM++ +TL+A +S RS + + I + + + +
Sbjct: 243 AELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSK-LLPAIIIYIFYANFMFVSRDAIAT 301
Query: 332 GILLPVAAALIPVILTISLSILILLQ 357
G + + L IL + +
Sbjct: 302 GKIPWWIGMWWVHVAVAILGILFIWR 327
>gi|254510429|ref|ZP_05122496.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
gi|221534140|gb|EEE37128.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
Length = 379
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/356 (10%), Positives = 106/356 (29%), Gaps = 7/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
YF + L +F L + + ++ + +++ S A +P +I+
Sbjct: 4 FDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFDRVIS-GGQSAFVFLEFTALTLPTLIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + L+R SE+ + A G S W+L ++ + G+ ++ +
Sbjct: 63 TVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLARAVLMFGLSAGLMMAVISVFLR 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + Q + ++ ++ + ++ T+
Sbjct: 123 PASVERLEQRQAEVAGDVTAQLLNEGEFLHPADGVTVYISRIDLDGTLHEVFVSDRRDTV 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGFQKF 240
+ + V L V + ++ +
Sbjct: 183 NPVSYSSTTAYLVNQASGIHLVMLDGVALRFDQQGNTLSSTLFEDAAYDVSELTNNTGTD 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
+ + E+I+ +++ + + + + +A+ L+ S + L
Sbjct: 243 NRSREAIPTIELIRDRDTVAETDDHSLGQLVDELHQRFSWIAICIAVALVGYSTLMLGSF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +L + + +P IL + +S L L
Sbjct: 303 SRFGLWPQILGAFTILVLLEGVRGFVSPVVI-EDPRLWVLLYLPAILGVVVSGLFL 357
>gi|283780133|ref|YP_003370888.1| permease [Pirellula staleyi DSM 6068]
gi|283438586|gb|ADB17028.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
Length = 386
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/376 (11%), Positives = 104/376 (27%), Gaps = 29/376 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS----ISRGAVLAATRV 59
+ RY +++ L + L VID ++ + + V
Sbjct: 3 TIDRYVLTIFIRVLLICFVSLAGLFVVIDCLGNLDEFSNYGEKHAGGILGVIFEYYSAHV 62
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ I + +V I L RT EL A GIS + + + + ++ +
Sbjct: 63 LGFFDRTIGLLAMVAAIFTVTWLQRTQELTALAAAGISPARAMRSVFIAAGIVALLGAAN 122
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK--------------------SDIIPWMQISNPQ 159
Q W ++ I P
Sbjct: 123 REFNLPQMRAKLGRNAQDWLGENSRRFVPKFDMRSDILISGASTVAKEQKIVAPNFLLPD 182
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+++ + ++ ++ +L V + I
Sbjct: 183 DRTEQLPVELVSWGRAIQAREALYQPATDEHPSGYLMRGVTQPLAVAQLSSVSLHNEPTI 242
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII----KKMSFSNKSNIFHNYRAETQFY 275
++ L EQ A+ + + + ++ I + +
Sbjct: 243 LAPRDHRWLAPDECFVSSVVTFEQLAASNAWRQYLSTYELVTGLKTRTIQPGADIKVTLH 302
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+V PL+ + + + + L + A + + ++ S G + +L
Sbjct: 303 ARLVQPLLDMTLLFLGLPLVLTKGNR-NIFLAAAICLLLVGSFFIVVMTCHSLGSNYLLS 361
Query: 336 PVAAALIPVILTISLS 351
P AA +P+++ L+
Sbjct: 362 PTMAAWLPLLIFGPLA 377
>gi|34581207|ref|ZP_00142687.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262592|gb|EAA26096.1| unknown [Rickettsia sibirica 246]
Length = 362
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S + I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDKTQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKAYNNLTMQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLINELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
>gi|67459625|ref|YP_247249.1| permease [Rickettsia felis URRWXCal2]
gi|67005158|gb|AAY62084.1| Predicted permeases [Rickettsia felis URRWXCal2]
Length = 362
Score = 82.8 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 75/357 (21%), Positives = 145/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVSSLISFTSMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S ++ I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKTLSEGIISKSGLLFFESLKDENQIIQTQFINIAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKTYNNLTIQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLINELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIILH 358
>gi|332297890|ref|YP_004439812.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
gi|332180993|gb|AEE16681.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
Length = 381
Score = 82.8 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 117/362 (32%), Gaps = 10/362 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L Y K L + ++ FV + + + + ++ L + +P II
Sbjct: 16 VLILYLVKELLLYFFIAFVFFFMVFFVNQILLMAEDVLKKR-VPLADVLKLISYSLPFII 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q PF TLV ++ + +E++I RA G S +L P ++ + + I + V + +
Sbjct: 75 AQSAPFATLVGFLMCLGRMMSDNEILILRAAGKSFAVILVPALLLGLAISILSFFVNDYL 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI------FIGAKKILPENHIWE 177
G L + + + + + + I + +
Sbjct: 135 LPLGTISYNKLYRSILMSDPSIELESNSIKRTESATLVIGDVSGRTVSDLIFFDTDPQGT 194
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ D + + ++ L + + T +N+
Sbjct: 195 RRVIVSGTADIVNSQNPDVLMQLDMDNARVLFFDKTEKRNYDMMSAEQTRMNVFTSSLFS 254
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
+ Y++ + + E ++Y +P + L+A +
Sbjct: 255 SSAYTNPREMTSYDLRTMIRNMKTQQEKSSLQLNMYELEYYKKFSLPFGSLFFALLAMPI 314
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ F + N I + G+F + + + ++FG L +P + +
Sbjct: 315 AILFGKHNGQTIGLIIGLFICVAYWAAMILGQTFGIREGLSGFWTMWLPDLCVGAAGCAF 374
Query: 355 LL 356
L
Sbjct: 375 YL 376
>gi|332524894|ref|ZP_08401081.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
gi|332108190|gb|EGJ09414.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
Length = 358
Score = 82.8 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/350 (11%), Positives = 114/350 (32%), Gaps = 8/350 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ +T L+ + +V + L Q + +L + ++
Sbjct: 3 RELARTFGATLVVILTIVLTMFLIRTIGQAAG-GVVAPQDVVLLLGYVALGHLPTMLALS 61
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
V +V + R SE+VI A GI + + + P + S + + ++ + G +
Sbjct: 62 LFVAVVVTLGRMYRDSEMVIWFAGGIGLSRFVRPVLRTSWPVLLVIAALLLFVWPWGNRN 121
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
++L Q+++ D + + S+ + FI + + T + ++
Sbjct: 122 SLELRQRYEQRSDLSRVTPGVFQTSSDGSRVFFIERDTREGADARNVFIVAQTGETESVT 181
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
R + V L++ +K ++ + ++ E
Sbjct: 182 SARSGRLERDGDDRFVVLERGQRNDVDLKTGEKAQSSFETYRVLADEKRAREAERQPP-- 239
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ + + + + + M L+ ++ R +
Sbjct: 240 KAMDTLDLLQDPTRPNQGELT----WRFGLLTGAGNMLLLGIGLAATNPRRASN-WNLLL 294
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + +I + +++ SG L AA + ++++ +L ++
Sbjct: 295 ALLGFVVYFNLINLSQAWVASGRLGMGAALAVVHGSAFAIALGLLWWRDH 344
>gi|197336301|ref|YP_002155170.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
gi|197317791|gb|ACH67238.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
Length = 344
Score = 82.4 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/334 (9%), Positives = 104/334 (31%), Gaps = 20/334 (5%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
+ + + L +P + ++P + ++ F L SE+
Sbjct: 1 MSQKFISVLADASD-GDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEI 59
Query: 89 VISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSD 148
+ A G+ L+ + +++ G ++ ++ L++ + +
Sbjct: 60 TVMNATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQ 119
Query: 149 IIPWMQISN-----PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ + + DI K L + + ++ + +
Sbjct: 120 KGQFQRSPDGKAVVFIDDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGR 179
Query: 204 DKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
++L+ Y+ ++ N + + I ++ + + +++K+
Sbjct: 180 QVLELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLMKRPELEA 239
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
K+ + + I + + + +T++ +S R + + + +
Sbjct: 240 KAEL----------QWRISLIICIPLLTMVVVPLSAVNPRQGRFAK-LGPAVLLYLAYFL 288
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ KS + G L P + + I++
Sbjct: 289 SLSAGKSAIEDGGLAPSIGLWAINATLLLVGIIL 322
>gi|229587132|ref|YP_002845633.1| Putative permease [Rickettsia africae ESF-5]
gi|228022182|gb|ACP53890.1| Putative permease [Rickettsia africae ESF-5]
Length = 362
Score = 82.4 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 75/357 (21%), Positives = 143/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S + I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKAYNNLTMQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K + S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLIHELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 DNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
>gi|59711021|ref|YP_203797.1| inner membrane protein [Vibrio fischeri ES114]
gi|59479122|gb|AAW84909.1| conserved inner membrane protein [Vibrio fischeri ES114]
Length = 344
Score = 82.4 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/334 (9%), Positives = 104/334 (31%), Gaps = 20/334 (5%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
+ + + L +P + ++P + ++ F L SE+
Sbjct: 1 MSQKFISVLADASD-GDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEI 59
Query: 89 VISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSD 148
+ A G+ L+ + +++ G ++ ++ L++ + +
Sbjct: 60 TVMNATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQ 119
Query: 149 IIPWMQISN-----PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ + + DI K L + + ++ + +
Sbjct: 120 KGQFQRSPDGKAVVFIDDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGR 179
Query: 204 DKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
++L+ Y+ ++ N + + I ++ + + +++K+
Sbjct: 180 QVLELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLMKRPELEA 239
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
K+ + + I + + + +T++ +S R + + + +
Sbjct: 240 KAEL----------QWRISLIICIPLLTMVVVPLSAVNPRQGRFAK-LGPAVLLYLAYFL 288
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ KS + G L P + + I++
Sbjct: 289 SLSAGKSAIEDGGLAPSIGLWAINATLLLVGIVL 322
>gi|87310838|ref|ZP_01092964.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
3645]
gi|87286353|gb|EAQ78261.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
3645]
Length = 389
Score = 82.4 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/388 (11%), Positives = 112/388 (28%), Gaps = 39/388 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY LK L +L+ ++ + + + A + +P
Sbjct: 1 MRIITRYILWEILKIFFLALGALTLLIVLVGVVQQALR----EGLGPGPIARIIPYMIPD 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L + V+ L +EL +A G+S L P +++L I V + +
Sbjct: 57 ALRFSIPGTILFASCSVYGRLASGNELAALKAAGVSPLAALWPGYAIALVLSIACVWLND 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI------ 175
+ G + ++ Q + + + L I
Sbjct: 117 IGVSWGSQGVRRVLVQSFEEIAYGMLRTHKSFSSDKLSILVREVDGRRLMRPQIVAAATP 176
Query: 176 --------------WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
D I D ++ ++ VV P
Sbjct: 177 TSPQLLISAAEAELHSDENHQLIISLIDSRIESDGSQQGVFEHPGRMDHVVSLSDELSPE 236
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRS----FYEIIKKMSFSNKSNIFHNY--------- 268
++ + + ++ + ++ + +++ + + +
Sbjct: 237 HRSPSKILSSRIPQVLREERQIVQTQKEADIAWSAFAQIATLDAAQRTPPFDISYINSQI 296
Query: 269 -RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+ + + L+ ++++ + + + Y ++
Sbjct: 297 NRLRTEPWRRWANGFSCLFFVLLGVPLAIKQRNPDFVTSFFMAFLPVLLVFYPLLAFAVD 356
Query: 328 FGKSGILLPVAAALIPVILTISLSILIL 355
K G + P A I + + +S+ L
Sbjct: 357 RAKDGAVPPQ-AVWIGNVALLLVSLYYL 383
>gi|225627184|ref|ZP_03785222.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|260168438|ref|ZP_05755249.1| hypothetical protein BruF5_08728 [Brucella sp. F5/99]
gi|261757900|ref|ZP_06001609.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|225618019|gb|EEH15063.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|261737884|gb|EEY25880.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
Length = 402
Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 FRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|220925665|ref|YP_002500967.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
gi|219950272|gb|ACL60664.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
Length = 388
Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 112/312 (35%), Gaps = 13/312 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY F+ L L L G +++V + + ++ ++ +P
Sbjct: 1 MKQIERYIFRIALSAFLACLAGLTGVIWVTQALRELDLITAK-GQTLLIFFLITGLSIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + P + + LN SEL++ A G+S L+ PF+ ++++G+ +
Sbjct: 60 LLTIVAPVALFMAVLHALNRLNGDSELIVMSAAGMSPRHLMRPFLTLALIVGLAVAFLTI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S + DL+ + + + + ++ I ++ P + F
Sbjct: 120 QVLPSSFQELRDLLTRVRGDFIANVVQEGQF---TSLDSGITFHFRERGPGGTLLGIFMQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +++ + A+ + + L + + P ++++ + F+
Sbjct: 177 DRREAGRSVVYLAERGQAVDLDGQTYLVLEKGSIHRQQPNSRDASIITFARYAVDLAAFT 236
Query: 242 -------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ RS +++ + R + + + L +AM LIA +
Sbjct: 237 PPDTDTVYKPRERSTAQLL-FPDPNEHYYKLVKGRFRAELHDRLTAWLYPLAMALIAFA- 294
Query: 295 SLEFSRSNQPRI 306
+L R+ +
Sbjct: 295 ALGDPRTTRQGR 306
>gi|157964920|ref|YP_001499744.1| putative permease [Rickettsia massiliae MTU5]
gi|157844696|gb|ABV85197.1| Putative permease [Rickettsia massiliae MTU5]
Length = 370
Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 74/357 (20%), Positives = 145/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 13 KTLSWYLTKLYFKCFFIILFLLIGLLIISNIFDLLQKFKNIY-VPFSFFWRLILYKIPYL 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++NP
Sbjct: 72 LGQVSSLISFSAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 131
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S + ++ I + I + T
Sbjct: 132 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFEALNDENQIIQTQFINVAEKKLNNIT 191
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 192 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKAYNNLTIQTNLSINSLVNK 250
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 251 FIRPEMVSIWVLPKLINELLNSGLPVIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 309
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 310 DNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 366
>gi|262376976|ref|ZP_06070202.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
gi|262308014|gb|EEY89151.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
Length = 366
Score = 82.4 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 108/353 (30%), Gaps = 14/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL V +++ I ++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVMNGSGVSRHQLARLLVPMTLVFLIAQAGLMLWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G + L ++ ++ I+ +
Sbjct: 121 APWGIRQFEALTTSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAEK 180
Query: 184 IDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K + +I ++A + N + V L Y+ +
Sbjct: 181 EGKPDVMILAQEATRIEVPNDAANVVDLVNGRRYEIYPGTPQYTQAEFESYR-----LRL 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ ++ + S + ++ + + +P ++ ++A ++S R
Sbjct: 236 ESDEEAQFASTEVEALPTSQLWQNRQDPVVASELGWRVFVPFAILIALILAVALSEVSPR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + ++ ++ + K ++ I+ +I
Sbjct: 296 QGRYLKLFPALMIFASLIVALMAVKTRISKEE-----MGIWAYPLILIAYAIA 343
>gi|283786943|ref|YP_003366808.1| permease [Citrobacter rodentium ICC168]
gi|282950397|emb|CBG90045.1| putative permease [Citrobacter rodentium ICC168]
Length = 366
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/351 (15%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q SN +FI + ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQASNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWTTDTDRARAELHWRITLIFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + M + I T +KS G G L PV + +L ++L+I +
Sbjct: 296 V-LSMLPAMLLYLMFFLIQTSLKSNGGKGKLDPVIWMWLVNLLYLALAIGL 345
>gi|239946701|ref|ZP_04698454.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920977|gb|EER21001.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 362
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 74/357 (20%), Positives = 145/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S L ++P +
Sbjct: 5 KTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIY-VPFSFFWRLILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI + ++NP
Sbjct: 64 LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFMTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I T G + L + + S S ++ I + I + T
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDENQIIQTQFINVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFT-KEETKAYNNLTIQANLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + + +Y + P+M++A ++A+ R
Sbjct: 243 FIRPEMVSIWALPKLINELLNSGLPAIN-YQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L + A L+P +L +S I+L
Sbjct: 302 DNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLITAILLPSMLIFFISNFIILH 358
>gi|149173512|ref|ZP_01852142.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
gi|148847694|gb|EDL62027.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
Length = 388
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/378 (12%), Positives = 101/378 (26%), Gaps = 29/378 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY----------------- 46
RY K Y + + L V D +
Sbjct: 7 TFDRYLLKRYFHVFVIGFIATYGLYVVFDGFTNIDGFQAGAEKVSSNDLNGLEVDQNAST 66
Query: 47 -SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + L I P ++++ +VVF + R EL + GI ++L P
Sbjct: 67 SLLWIMLEFYFYQSSLFFDMISPILSVLAGVVVFSLMVRHGELNPVLSAGIPTYRLAIPL 126
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ +I++ L I S + + +I Q++F+
Sbjct: 127 AMATIIVNCVMCLNQEVIIPSIADKLQAERGDMASSAQFVEPVYDFSTRIMINGQEVFLT 186
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+K+ + LK+ +
Sbjct: 187 EQKMKNAEFVLSKPMVHDFVTVKSDTAIYQTPTQTRPGGW-LLKQATPSYQELEIAEFAR 245
Query: 226 TTLNIPIKMDGFQKFSE-------QFASRSFYEIIKKMS--FSNKSNIFHNYRAETQFYF 276
+ + + ++ S ++ + + + + +
Sbjct: 246 EIIQPGPEPNEIFIVTDVGCDQLCNRNFSSLISTSDLIARINNPSFSDLSIRKQKLDLHS 305
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ P+M + LI+ L S + +A L+ I G + ++ P
Sbjct: 306 RLTRPIMNLIAVLISIPFVLR-KESRSLILNIAICACVMGGLFGISQCFLYMGSTKLISP 364
Query: 337 VAAALIPVILTISLSILI 354
AA PVI +L+
Sbjct: 365 DQAAWFPVITNGTLAAWF 382
>gi|302383687|ref|YP_003819510.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194315|gb|ADL01887.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 376
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 110/358 (30%), Gaps = 8/358 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ +Y F+ L + + + + E S+ L VP +
Sbjct: 3 LIQKYLFRQISLPVLAACASLAGIGILSQTLDQLEIIVER-GQSVWVLLKLTLLAVPQLF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P V ++ L R EL + A G+S WQ++ P ++ + + +L I
Sbjct: 62 SVILPIGLFVGALIALTRLQREQELTAAYASGMSRWQMIAPGAWLAVCVAVVMLLTNVVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + + + ++Q N ++ +++ +
Sbjct: 122 QPWSQRTAREQAFSIRTDLAALLVEEGRFVQGPNGLTVYVQQIEQNGLLKNLFIYIQNGD 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID--KNSTTLNIPIKMDGFQKFS 241
+ + +K +Y + + + + QK
Sbjct: 182 EVTTWDASEARFGRVDGQPVLTMKQGSWQQYSSAGVLQQLVFDGYVFPLGQYVTDDQKIR 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--ASVSLEFS 299
+ A ++ + + + + PL + +A A + FS
Sbjct: 242 YKPADLWMGQLFNPTDAL-VRDTGSRGELLAEAHSRLSSPLYALTAMAMALTAILGGAFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ I + ++ + +G L L I+ ++++ +L +
Sbjct: 301 RTGYSARIAKASGAFLLVRVVGYAVVAASAWNGWLNVFQYVL--PIVATAVALRLLFR 356
>gi|254447192|ref|ZP_05060659.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
gi|198263331|gb|EDY87609.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
Length = 353
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/355 (10%), Positives = 118/355 (33%), Gaps = 14/355 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RY + K++ LL ++L+ L ++ + + N + L + +
Sbjct: 3 ITDRYLIREVAKSSAAVLLVLLVLMVGNTLVQLLSDAAD-GNMAPQYIWPLLVITLANYL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ F L + +E+ A G+ W P +I + + +++ I
Sbjct: 62 VLFMGLSLYLGGMLAFGRLYKDAEMAAMVACGMGPWDFFRPLFKVAIPISLAGLVLSVFI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + ++ N + + L + ++ S
Sbjct: 122 LPWMAGLQAKFTSDAEKPSVETHLREGEFNELGNGIFFVEEQSGGALSQVFVYSRDPSGE 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + +DA L++ YQ ++ + ++ ++
Sbjct: 182 SIQVAESGRVEDAPSGYEL----TLQQGRLYQINTEQRIRDIRYQEYEVMVESPNAVVDE 237
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ N ++ + + +P+ + + ++A +S R
Sbjct: 238 QVL--------AATQTSDLMRSDNPLEVAEWQWRLSVPIGCLLLAVLAFPLSYTSPRKG- 288
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ Y I + +++ +S ++ + + ++L I +LL++
Sbjct: 289 AFSKLGYAILVYILYSNFLSLGRSLVQNQEVPLWLGMWWAHLPVLALIIGLLLRR 343
>gi|23501574|ref|NP_697701.1| hypothetical protein BR0687 [Brucella suis 1330]
gi|254701470|ref|ZP_05163298.1| hypothetical protein Bsuib55_11511 [Brucella suis bv. 5 str. 513]
gi|254704017|ref|ZP_05165845.1| hypothetical protein Bsuib36_08829 [Brucella suis bv. 3 str. 686]
gi|256060812|ref|ZP_05450972.1| hypothetical protein Bneo5_10667 [Brucella neotomae 5K33]
gi|261324804|ref|ZP_05964001.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261752013|ref|ZP_05995722.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261754672|ref|ZP_05998381.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|306845288|ref|ZP_07477864.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
gi|23347487|gb|AAN29616.1| membrane protein, putative [Brucella suis 1330]
gi|261300784|gb|EEY04281.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261741766|gb|EEY29692.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261744425|gb|EEY32351.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|306274447|gb|EFM56254.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
Length = 402
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|330720484|gb|EGG98783.1| putative permease [gamma proteobacterium IMCC2047]
Length = 343
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/336 (12%), Positives = 109/336 (32%), Gaps = 13/336 (3%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
+V L +++ + + L R+P I+ ++P L+ ++VF + +
Sbjct: 1 MVLTSRLVRYISEVAS-GDIAADFLFYLIVFRLPDILLMVLPISLLLAILLVFGRMYIEN 59
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
E+ + A G+S+ +L + L+ + + +A G K +L + + +
Sbjct: 60 EMAVFSASGVSLKKLAVYAMASVSLVSLTVAALSFSLAPWGLKKVDELFVENANRTVFET 119
Query: 147 SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND-- 204
+ + ++ KK+ + + +
Sbjct: 120 VRAGRFSPMGEDNMSLYAERLSDDQRVMSDVFIAREANGKKSNFQIMAEQGYLEVKPNSL 179
Query: 205 --KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ LK Y+ D T + S + + + +
Sbjct: 180 AKYLILKNGYRYEGDPGSRDYKVTQFETFGIKLSSPPEQVKENSTRGMATGELLKLDSST 239
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
I + I +PL++ + L+ +S R + ++ + F ++
Sbjct: 240 AIAE-------LQWRISLPLLVPIIALLGVPLSRVNPRQGRFYFLIP-AMLFYFAYLVLL 291
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ MK+ + + P ++ + L++L+ L
Sbjct: 292 SGMKTAVEENTISPWLGLWWVHVMFLCLALLVFLNL 327
>gi|254713812|ref|ZP_05175623.1| hypothetical protein BcetM6_10745 [Brucella ceti M644/93/1]
gi|254717130|ref|ZP_05178941.1| hypothetical protein BcetM_12054 [Brucella ceti M13/05/1]
gi|261218945|ref|ZP_05933226.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261321556|ref|ZP_05960753.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
gi|260924034|gb|EEX90602.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261294246|gb|EEX97742.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
Length = 402
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 109/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G + P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAAMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|148559016|ref|YP_001258669.1| hypothetical protein BOV_0679 [Brucella ovis ATCC 25840]
gi|254707609|ref|ZP_05169437.1| hypothetical protein BpinM_11726 [Brucella pinnipedialis
M163/99/10]
gi|254709808|ref|ZP_05171619.1| hypothetical protein BpinB_05961 [Brucella pinnipedialis B2/94]
gi|256031299|ref|ZP_05444913.1| hypothetical protein BpinM2_11718 [Brucella pinnipedialis
M292/94/1]
gi|256159413|ref|ZP_05457191.1| hypothetical protein BcetM4_10693 [Brucella ceti M490/95/1]
gi|256254707|ref|ZP_05460243.1| hypothetical protein BcetB_10510 [Brucella ceti B1/94]
gi|261221887|ref|ZP_05936168.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261315099|ref|ZP_05954296.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261317346|ref|ZP_05956543.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|265988384|ref|ZP_06100941.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|265997850|ref|ZP_06110407.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|148370273|gb|ABQ60252.1| putative membrane protein [Brucella ovis ATCC 25840]
gi|260920471|gb|EEX87124.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261296569|gb|EEY00066.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261304125|gb|EEY07622.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|262552318|gb|EEZ08308.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|264660581|gb|EEZ30842.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
Length = 402
Score = 82.1 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|15604603|ref|NP_221121.1| hypothetical protein RP769 [Rickettsia prowazekii str. Madrid E]
gi|3861298|emb|CAA15197.1| unknown [Rickettsia prowazekii]
gi|292572419|gb|ADE30334.1| Putative permease [Rickettsia prowazekii Rp22]
Length = 362
Score = 81.7 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 76/357 (21%), Positives = 146/357 (40%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L + L+ + ++ ++ + + S ++P +
Sbjct: 5 KTLSLYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIY-VPFSFFWRFILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL +++EL + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LSQVSSLISFTSMLFFLRNLTKSNELTAILSSGIHIWQVLIIPCIVTLILGIICTTILNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I+T G + L + + S+ S + + I K I + T
Sbjct: 124 ISTIGLQKYSLLEAKLTKKALSECLISESGLLFFESLNEHNQIIQTKFIDVAEKKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ID N + R DA II N K+ L +V ++ T+ + ++
Sbjct: 184 ILFIDNNNSFLKRIDALYGIIDNKKLYLNRVKVST-KDEIKSYSNLTIQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + +Y + P+M++A ++A+ R
Sbjct: 243 FMRPEMVSIWALPKLINELLNSG-LSAINYQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 CNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIILH 358
>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 364
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 120/354 (33%), Gaps = 15/354 (4%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
YL +F L + + +V + + + S A +P +I+ ++P
Sbjct: 3 QYLLFFGFFALILVAVFWVNRAVVLFDTLIG-NGQSALVFLEFTALTLPNLIRMVLPIAA 61
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+ V LN SEL + RA G S WQ+ P + I+ + + + + +
Sbjct: 62 FGAAVWVTNRLNSESELTVLRATGTSPWQMARPALAFGIITALMMSALTHYLLPASINQL 121
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + N + ++ P + + ++I P+ + + F S D +
Sbjct: 122 EERESEVSRNITAKLLSEGDFLH---PAEGVTFYIRQIDPDGTLNDVFLSDRRDPAVTVT 178
Query: 192 HRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + L V + + +I + +
Sbjct: 179 YTGTRAFLVRDEGSAHLIMVEGMAQRLDNETQRMSTTFFSDFSYDISALARKAENPARNI 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSN 302
+ E++ +++ + + + L+ VA+ LI S + FSR
Sbjct: 239 RAIPSLELMTSTEAVTRTDGYSAGAQAEELHLRFARALVCVAVALIGFSALMLGTFSRFG 298
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + F+ + + + L P+ +P +L +++S++ L+
Sbjct: 299 VWRQAFLAFVVLIFVEGLRGVVSEPVLDNPGLWPLI--YLPTLLGLAVSLIFLI 350
>gi|226329628|ref|ZP_03805146.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
gi|225202814|gb|EEG85168.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
Length = 232
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 1/229 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L++ L L + L +I + ++G+ +++ + A +
Sbjct: 1 MFGVLDRYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQ-GDFTTLDAGIYAILNIL 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q P L+ ++ L SELV+ +A G + Q+ + +I L + TVL+
Sbjct: 60 KDVQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A GE+ + + ++ W + N I + + DF
Sbjct: 120 EWGAPQGEQYARNYRAEKIMGNSLVSTNRGMWAKDGNQFIHINRIKSQNEMQGITLYDFN 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + + D+ D + + Q + KN LN
Sbjct: 180 NDRKLETVRYASSATYDVDKKNVDAKTSRTIRLNQSTKKSPVKNRYHLN 228
>gi|254718823|ref|ZP_05180634.1| hypothetical protein Bru83_04675 [Brucella sp. 83/13]
gi|265983808|ref|ZP_06096543.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306838745|ref|ZP_07471579.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
gi|264662400|gb|EEZ32661.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306406147|gb|EFM62392.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
Length = 402
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|300718281|ref|YP_003743084.1| permease [Erwinia billingiae Eb661]
gi|299064117|emb|CAX61237.1| Putative permease [Erwinia billingiae Eb661]
Length = 356
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/356 (12%), Positives = 114/356 (32%), Gaps = 10/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY ++ + ++G ++++F + ++ + +V +
Sbjct: 1 MSLIERYITVE-IRRLVMVIVGFLVVMFASYSAQRYLTDAANGTLALQVVFDVVCYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V L SE+ A G S +L + +I L + L+
Sbjct: 60 ALEMLLPVGLYVATAVALGQLYTDSEITAIFAAGASPVRLYKAVLFLAIPLAVVVTLLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D + + + A +I P +H D
Sbjct: 120 YGRPWAYGNIYRLEQQSQSVLDVSHLQANKF---NVNGSGRMVMASRIDPASHQLTDALI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ KN ++R + + + + + + + ++ K
Sbjct: 177 YSRSGKNTNLYRAHSVVVTDPSPATPSVNLRNGTAYVLDREGAQDNMQHYHSLNIALKPF 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E+ +K + + + + + L + M L+A +S R
Sbjct: 237 -----IESQEVRRKSAPVADLWCSSDPADKAELQWRESRGLSTLLMVLLAIPLSRTKPRQ 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ + + Y + ++ +G L + + ++ ++ L +
Sbjct: 292 GRYATLLPLTLLFTAIFYG-GNVCRTLVANGSLPAIPGVWLVPLVMLTGLAFCLAR 346
>gi|149378264|ref|ZP_01895976.1| predicted Permease [Marinobacter algicola DG893]
gi|149357461|gb|EDM45971.1| predicted Permease [Marinobacter algicola DG893]
Length = 352
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/341 (11%), Positives = 106/341 (31%), Gaps = 12/341 (3%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
L +++ + + + A R P ++ I+P + +
Sbjct: 1 MLAVSGILLLVFMSGRFIKYLADAA-AGELAGDVLFQIMAYRFPGFLELILPLGFFIGIL 59
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ + + SE+ + A G+S QLL ++GSI + + + ++ G K +
Sbjct: 60 LAYGRMYLESEMTVLFACGVSDKQLLMKTLLGSIPVMLVVGAMSLYVSPWGMKKVEGIFN 119
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ + + + + S + + + + E + K +
Sbjct: 120 EQRQATEFEMLAPGRF--QSLSSGERVTYTEALSEDKRRLEGVFIAEHSEDGKGLTI--- 174
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
+ + ++ + L + D + RS K++
Sbjct: 175 --ITAREGSQFIDEETGSRFLVLEDGARFEGLPGQLAYDVTGFEAYGLKIRSGSAGEKEL 232
Query: 257 SFSNKSNIF---HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
++ + ++ +PL++ +TL+A +S R + + +
Sbjct: 233 EEGLATSALMASDDPEHRAMLHWRFTLPLIVPIVTLLAVRLSRVNPRQGR-FFHLLPAML 291
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + G + L L + L + +
Sbjct: 292 VYITYLGLLIVARDALEGGKVPEWIGLLWVHGLFLVLGLWL 332
>gi|145588807|ref|YP_001155404.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047213|gb|ABP33840.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 371
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 105/351 (29%), Gaps = 6/351 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ TT L + ++ + I + VL + + ++
Sbjct: 7 LRRELSLTTGGVFLVLVTIMITTLVIRILG-FAANGAINPEDVLVLISLATLGYLAVLLT 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V ++V + SE+++ A G+SI L+ P + + L I L+ +
Sbjct: 66 VSLFVATLIVLVRWYKDSEMIVWFASGLSISNLIRPILQFATPLIIIIALLALFVWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSITIDKK 187
+ + Q+++ D + + + ++ FI + S
Sbjct: 126 RESTLISQRFQQRDDVSMVSSGQFRESARAERVFFIEELDVDKNEVKNIFVADSKNGRVS 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + V L Y+ D + E A
Sbjct: 186 VAVASAGYIQNSEDGEKSVVLHNGRRYEGQPTQPDFRILEFT---DYTTKIRSKEALAPP 242
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
N++ + + I +PLM + + LIA ++ R
Sbjct: 243 PRDREKTISELLNETEPTTINPNRAELLWRIGLPLMALGLVLIAIPLAYVNPRLGNYT-A 301
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ Y I + ++ + ++F G +L + ++ +++ +
Sbjct: 302 MFYAILIYLIYSNLLNLTQNFVSQGKFGFFVGIWPIHLLALVIATILIRNR 352
>gi|256369122|ref|YP_003106630.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|255999282|gb|ACU47681.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
Length = 402
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/360 (11%), Positives = 109/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ M +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI-FTMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|254437787|ref|ZP_05051281.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
gi|198253233|gb|EDY77547.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
Length = 379
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/357 (10%), Positives = 111/357 (31%), Gaps = 9/357 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY L +F L +++ ++ + +++ S L + +P +I+
Sbjct: 4 FDRYMLSQLLVLFGFFSLILVVIYWINRAVRLFDRLI-ADGQSAWVFLELTSLSLPSVIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P V + V ++ SEL + +A G S ++L P + +++ ++ + +
Sbjct: 63 IVLPLSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPIIYFGLIVAALMSVLTHILV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + ++ S+ I+ ++
Sbjct: 123 PLSTEQLTSRQSEISQTMTARLLTPGEFLTPSDDVTFYIRELTPSGEMLDIFISESTDPT 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ R V + + + + ++ M+
Sbjct: 183 RRTTYTAARAYLVRTENGPQLVMIDGLTQTLDHETNRLLTTGFADFVYDVGALMNDEFVR 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
S +++ + + + Y + + + I + L+ S + +
Sbjct: 243 RVSVNGLSTLALLRPSAAAIAATNKTGYELKLRGHDRIAQAALGFVAGLVGFSALVVGGF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG-ILLPVAAALIPVILTISLSILIL 355
+ + + +L + + S ++ L P + I + +S ++L
Sbjct: 303 SRFGLWRNILFAVGLVILLKILESTGTSIARANPALWPF--VYLAGIGGVVISAILL 357
>gi|271498968|ref|YP_003331993.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
gi|270342523|gb|ACZ75288.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
Length = 372
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 124/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL +V ++L + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKNVLLKAALVLALLTASLATANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + N + Q + +F+G ++
Sbjct: 121 SPWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKVNGGDFERVFLAQLHPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
+ + ++ +A + + +Y R + +
Sbjct: 181 ENTRPSVVVADKGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQQVA 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
SF + + + ++ F++ + + ++ M ++ +S+
Sbjct: 241 VDPTNVEQMSFKTLWRSSDIAARAE----------FHWRLTLIFSVLMMAVMVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G L P+ + ++ +SL++L+
Sbjct: 291 PRQGRV-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLSLAVLL 345
>gi|170743203|ref|YP_001771858.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
gi|168197477|gb|ACA19424.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
Length = 388
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 110/313 (35%), Gaps = 13/313 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY F+ L L L G +++V + + ++ ++ +P
Sbjct: 1 MKQIERYIFRIALGAFLACLAGLTGVIWVTQALRELDLVTAK-GQTVLIFFLITGLSIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + P + + LN SEL++ A G+S QLL PF+ ++++ +
Sbjct: 60 LLTVVAPVALFMAVVHALNRLNGDSELIVMSAAGMSPRQLLRPFLTLALIVSAALGFLTI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S + DL+ + + + + ++ I ++ P + F
Sbjct: 120 QVLPSSFQELRDLLTRVRGDFIANVVQEGQF---TSLDNGITFHFRESAPGGVLLGIFMQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + A+ + + L + + ++++ ++ F+
Sbjct: 177 DRREAGRSVTYLAERGQALDLDGQTYLVLEKGSIHRQQQNSRDASIISFARYAVDLAAFT 236
Query: 242 -------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ RS +++ + R + + + L +AM LIA +
Sbjct: 237 PPDTDTVYKPRERSTAQLL-FPDPNEHYYKLVKGRFRAELHDRLTSWLYPLAMALIAFA- 294
Query: 295 SLEFSRSNQPRII 307
+L R+ +
Sbjct: 295 ALGDPRTTRQGRG 307
>gi|62289649|ref|YP_221442.1| hypothetical protein BruAb1_0706 [Brucella abortus bv. 1 str.
9-941]
gi|82699577|ref|YP_414151.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
gi|189023899|ref|YP_001934667.1| permease [Brucella abortus S19]
gi|237815139|ref|ZP_04594137.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254688959|ref|ZP_05152213.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
str. 870]
gi|254697093|ref|ZP_05158921.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254729989|ref|ZP_05188567.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
str. 292]
gi|256257207|ref|ZP_05462743.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
str. C68]
gi|260545599|ref|ZP_05821340.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260754448|ref|ZP_05866796.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260757667|ref|ZP_05870015.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260761494|ref|ZP_05873837.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883477|ref|ZP_05895091.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297248057|ref|ZP_06931775.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
gi|62195781|gb|AAX74081.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
gi|82615678|emb|CAJ10665.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
Abortus 2308]
gi|189019471|gb|ACD72193.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
gi|237789976|gb|EEP64186.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260097006|gb|EEW80881.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260667985|gb|EEX54925.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260671926|gb|EEX58747.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674556|gb|EEX61377.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260873005|gb|EEX80074.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297175226|gb|EFH34573.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
Length = 402
Score = 81.7 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWAVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|294852049|ref|ZP_06792722.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
gi|294820638|gb|EFG37637.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
Length = 402
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASMPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/358 (15%), Positives = 121/358 (33%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + + + +++ + DL ++ + + + S + V
Sbjct: 1 MLKKLDRYILKSLIVSFVISFFVIAVVMLIGDLVKLYDLLFGKGS-SFIVLLKILGYTVV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + V+ +L+ SE+ R+ GIS++++ P + S+ + +F I
Sbjct: 60 FLLAFIVPMALTIAINYVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLFYSI 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A I + N + + I + ++
Sbjct: 120 AFVAPKARLSYRVEIAKTFRNKVYAALKPNMFYDKVDGVMWIKNLSPDKKHLKDVFFAQK 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K + + + + + G + L F+
Sbjct: 180 GKIFLAKKGDFKDIPSGILAEFFNVKMY---SPSKSGFEYGSFDRYELAFLTGRGYFKPN 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SF E++ S S + + ++ + + + A++LIA S + FSR
Sbjct: 237 KNNTRFMSFGEVVNYYSKSKSKDALYR------INKIVSMSMSVFALSLIAFSFGITFSR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +F FM Y I+ + +S + +P ++ I +K
Sbjct: 291 SGKSA-GIVASLFLFFMFYIILMLSESLCDATGNPYFI--YLPNVVAFVFGSYIFYKK 345
>gi|317493503|ref|ZP_07951924.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918446|gb|EFV39784.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 356
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 102/356 (28%), Gaps = 10/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + + + + + ++ + +V +
Sbjct: 1 MKLIEHYIMAEIRRLVVIIVGFLIFIFASYSAQRYLTEAAN-GTLALEVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V L SE+ AIG S +L ++ +I L I L+
Sbjct: 60 ALEMLLPVGLYVSVGVALGQLYTDSEITAISAIGASPIRLYKAVMLLAIPLSILVTLMSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D + + + + +TS
Sbjct: 120 YARPWAYAQIYQLEQQSQSELDVSHLRAKMFNINDSGRMILSEEINPDSNHLTDVLIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D V L Y D +S + + +D
Sbjct: 180 SGNKTSVYRAKTVDVTNPSPITPSVILHSGTGYTLRHQGTD-DSERVYRNLTLDLKPLNL 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A R +I + ++ ++ + + M L+A S+S R
Sbjct: 239 SVDAKRKAKSVIALIRSADPADYAEV-------QWRESRGVNAFLMALLAISLSRVKPRQ 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ I + Y + +S SG L + +L ++++ +
Sbjct: 292 GRFSTLLPLTILFTVIFYG-GNVCRSLVASGYLSVTPGVWLVPMLMFIGVLVLIAR 346
>gi|313672807|ref|YP_004050918.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939563|gb|ADR18755.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
DSM 19672]
Length = 364
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/353 (15%), Positives = 117/353 (33%), Gaps = 3/353 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF K ++ + I+ + + + R P+ + Q +
Sbjct: 7 YFLKILIRNFIVVEAFVYIIYMFFMFFTQSKYIARY-GATFKDIFIYDVMRSPVFVSQTL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P +V +V F L RT+E+ +IG S+ +L + S + + + +
Sbjct: 66 PVSFIVAVVVTFIILIRTTEITAYVSIGGSLLSILKVLIFLSFSVSLVMFFLTEFVVPKS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ D ++ + ++ + + I + I +G I+ + F + + K
Sbjct: 126 QVKSNDYKTKYIEKREEVRVTTLNNFWIKDKNSFIQVGTIDIINKKLFDIKFIDLDENGK 185
Query: 188 NKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ I L K+V +I ++ +
Sbjct: 186 IVKVRYISQADYIEGKKWSVLEYKEVDTTDVPKIVKEEKNLEQENDFFTKLVDVSLVSQP 245
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ IKK+ KS R +Y I L +V + ++ ++ SR
Sbjct: 246 KELTFSEIKKIVKFYKSKGLSYSRHMCYYYNKIANILNVVLLVIVVLPFLIDLSRGFSYV 305
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
GI F+ + + S GKSG++ P + + + I++ +K
Sbjct: 306 RAAGNGIVIIFLYFIAQSTFFSMGKSGVMPPFWSNFLGYFIFIAVGFFEYYRK 358
>gi|254360524|ref|ZP_04976673.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|261492350|ref|ZP_05988912.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496136|ref|ZP_05992544.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153091064|gb|EDN73069.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|261308238|gb|EEY09533.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312033|gb|EEY13174.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 369
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 109/351 (31%), Gaps = 9/351 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + + L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVS-GKVPADLVVSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA GI L+ + SI V + +
Sbjct: 61 QLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVAMFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M I L + ++++
Sbjct: 121 TPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFIDKIENNSLNDIYVFQPEQQKK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + L + ++ D + G+Q
Sbjct: 181 NKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSADFRISHFENYSAYLGYQDVESD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K M A+ + ++ + + L + M L+A +S R +
Sbjct: 241 EKLVQRADFKKLMET-------KTPEAKAELHWRLALILAVPLMALLAVPMSSVNPRQGR 293
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + + + +KS G SG L + + + L +++
Sbjct: 294 FAKLLPALLLYLIYF-LLQSSLKSSGASGKLNAEVLMPLVSVAFLVLGVIL 343
>gi|293393093|ref|ZP_06637408.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
gi|291424239|gb|EFE97453.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
Length = 393
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 127/351 (36%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L + + + + L A VP +
Sbjct: 31 IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVD-GDVPTNLVLSLLALGVPKMA 89
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++L + + I
Sbjct: 90 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKRTLIIAAMVLALLTSLVAAANVFWI 149
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++I + K N + + +F+G K N+++
Sbjct: 150 GPWASSHQDEVIAEAKANPSIAGLAEGQFQPSQDGNAVLFVGNVKGNTFNNVFLAQLRPN 209
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + + + ++ + ++ + +
Sbjct: 210 GNQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFSDYKAVVGHRAVA 269
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + A +F++ + + + +V M L+ +S+ R +
Sbjct: 270 MDNTQAEQM-----SMLTLWQSDDQEARAEFHWRLTLVVSVVLMALLVVPLSVVNPRQGR 324
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + + T ++S G L P+ + + ++++ +
Sbjct: 325 V-LSMLPAILLYLIFFLLQTSLRSNAGKGKLDPMLWIWLVNAVYFAIALAL 374
>gi|163842957|ref|YP_001627361.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|163673680|gb|ABY37791.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
Length = 402
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVRVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|161618656|ref|YP_001592543.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|260566734|ref|ZP_05837204.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|161335467|gb|ABX61772.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|260156252|gb|EEW91332.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
Length = 402
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 111/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF+ ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFVLIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|17987545|ref|NP_540179.1| hypothetical protein BMEI1262 [Brucella melitensis bv. 1 str. 16M]
gi|225852207|ref|YP_002732440.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|256044380|ref|ZP_05447284.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113223|ref|ZP_05454091.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|256264285|ref|ZP_05466817.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|260563732|ref|ZP_05834218.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|265990798|ref|ZP_06103355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994634|ref|ZP_06107191.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|17983248|gb|AAL52443.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
str. 16M]
gi|225640572|gb|ACO00486.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|260153748|gb|EEW88840.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|262765747|gb|EEZ11536.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001582|gb|EEZ14157.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094545|gb|EEZ18354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
Length = 402
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 111/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + ++++ + ++ +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSC 179
Query: 182 I------TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|86131956|ref|ZP_01050553.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
gi|85817778|gb|EAQ38952.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
Length = 552
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 1/160 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F ++KT L M + + + ++ + +P
Sbjct: 1 MKILDRYIFFTFVKTFLSIFTILMFIFVLQSVWLYIQELAGR-DLDFDVILKFLLFAMPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P L+ +I+ F N E ++ GIS+ + + + I LGI + L N
Sbjct: 60 LVTLVLPLSVLLTSIMTFGNFAENYEFAAMKSTGISLQRAMKSVIFFIIFLGIASFLFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD 161
+ + + +L + ++ +
Sbjct: 120 YVIPASQYEFRNLRNNIGKMKPAMLIRSGQFNEVGDDFNM 159
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/200 (8%), Positives = 58/200 (29%), Gaps = 5/200 (2%)
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
D I+ + + ++ + K ++ + + D + V +
Sbjct: 258 RDIDNTYQMMDIVLLDSSITALSERFVEDRTKFTNKYVSRIKPPPVDTLYQGNVKQQSAE 317
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
++ + +++ K + K + + + E +
Sbjct: 318 IKEAILDNYEIKDRVRILEIAKSNISNTIADIENRKKILKID----VKRLSKFEISLHEK 373
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
V+ + + + A + R + + G+ + I K+ + + P
Sbjct: 374 YVLGFSCILLFFVGAPLGA-IIRKGGLGLPIVIGVVLFLTFHFIGIFAKNSAEDNSISPF 432
Query: 338 AAALIPVILTISLSILILLQ 357
A+ + + L + + +
Sbjct: 433 IASWLSTFILFPLGVYLTYR 452
>gi|238793061|ref|ZP_04636690.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
gi|238727661|gb|EEQ19186.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
Length = 364
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 122/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALFTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGREFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ + + L K Y+ R + I Q
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S ++ + + +F++ + + + ++ M L+ +S+
Sbjct: 241 QNNNVAEQMSMKQLWR----------ANQPDTRAEFHWRLTLIVSVIIMALLVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S +G L P I +++++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPFIWMWIVNGAYLAVAVVL 345
>gi|255320991|ref|ZP_05362164.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262379919|ref|ZP_06073074.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255301955|gb|EET81199.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262298113|gb|EEY86027.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 366
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 119/351 (33%), Gaps = 10/351 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILLSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + GIS +L + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRNRLARLLIPLTLVYMLVQSILMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + L ++ ++ I+ +
Sbjct: 121 SPWGIRQFEQLTTSQAVRTGFDLVRPKEFISSGPYTIYAGSLSEDHKNLKEIFFYQRAEK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + +I K+A + +D + +V+ + I + + + ++ E
Sbjct: 181 PGKPDVMILAKEATRVEMMDDSANVVDLVQGRRYEIYPGQPRY---SQAEFESYRLRLEN 237
Query: 244 FASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ +F + + ++ S + E++ + I +P ++ ++A ++S R
Sbjct: 238 DKTANFESDDVAALTTSKLWEQRADPVVESELGWRIFVPFAIMVALILAMALSEVSPRQG 297
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + ++ ++ I K + + ++
Sbjct: 298 RYMKLFPALLIFASLIVALMAIKTRASKDE-----IGIWAYPAVLLVYAVA 343
>gi|238785038|ref|ZP_04629035.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
gi|238714079|gb|EEQ06094.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
Length = 364
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 124/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLILAALILALGTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ + + L K Y+ R + I Q
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + ++ + + A +F++ + + + +V M L+ +S+
Sbjct: 241 QNSNVAEQMTMKQLWRS----------NEADARAEFHWRLTLIVSVVIMALLVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S +G L P+ + +++++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLLWMWTVNGVYLAIAVIL 345
>gi|254501938|ref|ZP_05114089.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
gi|222438009|gb|EEE44688.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
Length = 395
Score = 81.3 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/363 (12%), Positives = 117/363 (32%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L +V+ + + +I + + +P
Sbjct: 1 MNTLERYIIRRTAYAFTLTLAAMTGVVWATQALRQLDLVTSK-GQTIVQFIGITMLALPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + PF ++ I+V +L+ SEL++ A G S + +L P + + ++ + +
Sbjct: 60 LIVTVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVLAFATIIMLLVSALSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +G I + + + ++ + + + T
Sbjct: 120 YVAPAGLAQLRTEITRVRADLVANIVKPGRFINVEEGLTFHIRNRSGKGTLDGLLMHDTR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGF 237
+ A V ++ + + S ++ +
Sbjct: 180 DPDTAFTYQAETGNIVEAAGRTLLVMQNGTIQRRPKQVGDMSIVRFQSYAFDLSNLIPEA 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--S 295
+ + + RS ++ + + H R + + +PL ++ LI +
Sbjct: 240 SEPVFKPSERSTANLLGPPGNDYFA-VTHPERLRAEIHERFSLPLYCLSFALIVFAFLGV 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILI 354
+R + + + I +L T + + + + A + +L L+++
Sbjct: 299 ARTTRQGR-GMAIVGAITCCVLLRTTGFGITAISNDSAV--LYAMRYVVPVLGGGLALVS 355
Query: 355 LLQ 357
+L+
Sbjct: 356 ILR 358
>gi|254693441|ref|ZP_05155269.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 3
str. Tulya]
gi|261213694|ref|ZP_05927975.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|260915301|gb|EEX82162.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
Length = 402
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + L A+ + + + + + N + ++ +P
Sbjct: 1 MRLIELYILRRVAFMFFAVLGAAVGITWAVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N
Sbjct: 60 AIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ +I + + + I ++ + +
Sbjct: 120 YVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I I D+ ++ N +V+ + V + I D + LN
Sbjct: 180 DPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAG 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ ++ + + + PL+ AM +A +
Sbjct: 240 DDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGD 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + ++Y + L+P+++ + ++L
Sbjct: 299 SRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357
>gi|269213541|ref|ZP_06158032.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146393|gb|EEZ72811.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 182
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 68/181 (37%), Gaps = 4/181 (2%)
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ DK + + + + +LK + G ++ ++ T I +K +
Sbjct: 1 MRNDKNELMQATEAESAVLNNDGSWQLKNIRRSTLGEDKVEVSTAAEETWPIAVKRNLMD 60
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + ++ +V P+ M L+A + + +
Sbjct: 61 VLLVKPDQMSVGELTTYISHLENNNQ-NTQIYAIAWWRKLVYPIAAWVMALVAFAFTPQT 119
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A +P I L++ ++ ++
Sbjct: 120 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRRQ 179
Query: 359 E 359
E
Sbjct: 180 E 180
>gi|73542369|ref|YP_296889.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
gi|72119782|gb|AAZ62045.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
Length = 373
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 108/351 (30%), Gaps = 9/351 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + + I + S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILG-LAANGKASPNDVLILIGLATIGYLSILLS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++V + SE+V+ + GIS+ L+ P + + + ++L+
Sbjct: 66 ATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFILLSLLLGLFAWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSITIDKK 187
+ +++ G +++ SN +FI G + +
Sbjct: 126 QQSTLFRDRFEQRGVLSMIAAGRFIEPSNGNYVLFIEGIDGNMKYARNVFVANAEANKIG 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ H+ + + V ++ Y ID + + +
Sbjct: 186 VALAHQSTFETMPNGDRMVVMENGRRYAGTPGQIDYRIVEF------ERYAVKVDNKPPE 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S E K + + + I +P++ +IA ++ R + +
Sbjct: 240 SANEQPPKSRDTFDLLRKPTLENLGELLWRISLPILAFNFVMIAIPLAYVNPRLGRYTPL 299
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
V + +I + +S+ +SG + A + ++L+ +
Sbjct: 300 VF-AVLIYLTYSNLINLAQSWVRSGSIPFWLAWWPIHAVAFLAALLMFRYR 349
>gi|154174950|ref|YP_001408879.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
gi|112803667|gb|EAU01011.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
Length = 356
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/349 (13%), Positives = 109/349 (31%), Gaps = 4/349 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY YLK+ L + IDL + N + + + +
Sbjct: 8 RYVGWVYLKSFLIVFFALELFYVGIDLLTNLKDLPNSANLQ----LLYVGLTLLSAVSYV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I+ N+ R++ELV A+G+S L+ P ++ + V +
Sbjct: 64 MPISLVFALIISHINMVRSNELVSFYALGVSKNGLILPPFFIALAVTFLYVGLNCTPFAY 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + + S + + ++ ++
Sbjct: 124 AYDYQKSIAKNTSFSKSTTDSFLKFEGKFIYIKELSASQKNAKDVRIFDINGTDLLSTTF 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + + N + K + Q G + + K + + +
Sbjct: 184 ADGAKFKNNHWQLQDVNQTLLPKDLRLGQKGLSVQNFDELDALSGFKPKSIESANAADGA 243
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
R F+ K+ ++ FY L + P + L+ R
Sbjct: 244 RFSIPDTLDFIFTFKNEGVELDSVKSAFYSLAIAPFFAPFLILVLYYHLPMTGRFFNLAF 303
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +++ ++ ++ F +S ++LP ++PVIL + I +L
Sbjct: 304 ASFIFVVITLVIWGVLFVLTRFAQSSVILPEFGIVLPVILLFAYGIYLL 352
>gi|71083417|ref|YP_266136.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762160|ref|ZP_01264125.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062530|gb|AAZ21533.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1062]
gi|91717962|gb|EAS84612.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
Length = 357
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 131/359 (36%), Gaps = 3/359 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ + + L + I++ + ++ E + + S L+ P
Sbjct: 1 MKTYIKFLINLFNISLLKIFITFFIIILITNILEQIEFF-KNIDLSFFYLFFLSLLNTPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +I+PFI L+ V F +L +EL + + G++ +++ + S +LGI V+
Sbjct: 60 VLFEILPFIFLLGTQVFFIHLIDKNELQVFKYSGLNNIKIIKILGLYSFILGIIMVIFFY 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + + + + + + I + D N + +
Sbjct: 120 NGSSILKNSYLLIKNNYSGDNKYLAVITENGLWIKDEINDNINIINARQVNNEFLLNVSI 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+K ++ ++ I + K K+ + + G N L+ +
Sbjct: 180 TKFNKDFDLVEVLQSERVDITSKKWKIFNPITLK-GNSQSTLNELILHSNFDLQKINSLF 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+S S ++I + S S + + ++ P+ L +T+ +A +
Sbjct: 239 SNLSSLSIIDLIT-LRKSYMSLNYSVTDINSHLLKIVSYPVYLTLITIFSAIIMFNIGYQ 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ GIF ++Y I + G + + + +P+I+ ++ + +++ +
Sbjct: 298 KNTFYKITLGIFLSVIIYYINNFLSVLGTNEKIPVTLSIFLPLIILSIINFISIIKLNE 356
>gi|227357023|ref|ZP_03841394.1| inner membrane protein [Proteus mirabilis ATCC 29906]
gi|227162826|gb|EEI47786.1| inner membrane protein [Proteus mirabilis ATCC 29906]
Length = 343
Score = 80.9 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/330 (12%), Positives = 114/330 (34%), Gaps = 7/330 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ F L EI N + L +P + Q I+P + ++ + L
Sbjct: 1 MLIFFSQKLVEILG-AAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYV 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + A GI L+ ++ S+L + + + +++ K N
Sbjct: 60 ESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLIPWSSVHQEQVLEDAKANPSL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ S+ +++G+ K ++ T +++ ++ + N
Sbjct: 120 AALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQNQRPSVVVADKGYTKELPNG 179
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+ +Y + ++ + + + N+
Sbjct: 180 NQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRES-----TISRNRVEQKTMNELWH 234
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ +F++ + + +V M L+ +S R + + + + + + + +
Sbjct: 235 STEPESIAEFHWRLTLIFSVVIMALMVVPLSEVNPRQGRV-LSMLPAMLLYLVFFLLQSS 293
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILI 354
++S G+ G + P+ A + +L++L+
Sbjct: 294 LRSSGEKGKVDPLIAMWTVNGIYFALALLL 323
>gi|241668815|ref|ZP_04756393.1| hypothetical protein FphipA2_08605 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877347|ref|ZP_05250057.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
gi|254843368|gb|EET21782.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
Length = 360
Score = 80.5 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/349 (11%), Positives = 98/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + Q I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQ-AYSQGLGIDSIIKFVILTIPGNV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A G++ Q++ + L I T L + I
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ ++ + ++ T +
Sbjct: 121 NPLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKSGNTLKDVFLYMATDNS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + V Y + + F
Sbjct: 181 DEYKVVTAPVAEVITDKGAA-YVDFHDAHIYTKEPKTSEY-TYDTAKNAIYTIFDTSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + +F+ I + ++ +L+A ++ R N+
Sbjct: 239 YNHDKVDRLYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVASLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + G L +P I I +I
Sbjct: 299 YAK-LLPSVVVLAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFIIYAI 346
>gi|238750167|ref|ZP_04611670.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
gi|238711711|gb|EEQ03926.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
Length = 364
Score = 80.5 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIIAALILAVATSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSNDGSSALFIGNVSGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ +I + + + +Y + ++ + Q
Sbjct: 181 GNQRPSVIVADSGHMTERPDGSQVVTLNKGTRYEGTALLRDFRITDFVDYQAIIGHKEVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ M +SN +F++ + + + +V M L+ +S+ R +
Sbjct: 241 QN--NTVAEQMNMKQLWRSNEPDA---RAEFHWRLTLIVSVVIMALLVVPLSVINPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S SG L P+ + ++L++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNASSGKLDPLVWMWTVNGVYLALAVIL 345
>gi|330827962|ref|YP_004390914.1| putative permease [Aeromonas veronii B565]
gi|328803098|gb|AEB48297.1| Predicted permease [Aeromonas veronii B565]
Length = 362
Score = 80.5 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/342 (12%), Positives = 110/342 (32%), Gaps = 6/342 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F+ LKT L L +++ +I + + L +P + ++P
Sbjct: 1 MFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAAD-GEVPTRLVSTLLLLNLPNMALLMLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + L SE+ + A+G S ++ ++ ++L + IA +
Sbjct: 60 ISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMLLALLTAVVAAFNTGWIAPQAK 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +I ++K + +M + + + + + + + N
Sbjct: 120 EREYQVIDEFKADPGISFLQAGRFMDLDK--GRLVAYIQDLNDNGSKLQKIFVLQRAEGN 177
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A ++ D+ L+ + R + + I + +Q RS
Sbjct: 178 NPPSVVVATEGVVTVDENGLQWLTLMDGSRYEGNFSGKQFQISDFREYGLVIRQQEMERS 237
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + + + + I +PL + +TL+ ++ R + +
Sbjct: 238 NRK--AAAKPTMELFGTQDNAMMAELQWRISLPLSIPVLTLLVVPLARVNPRQGRYAK-L 294
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
I + +++ +S SG L + + +
Sbjct: 295 LPAIMLYLSYFLLLSAARSAIDSGRLPYWPGMFLVPLGYLLF 336
>gi|46446270|ref|YP_007635.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399911|emb|CAF23360.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 360
Score = 80.5 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 115/356 (32%), Gaps = 2/356 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-NYSISRGAVLAATRVPLI 62
I RYF ++K L FL+ L +ID + + I +
Sbjct: 5 IWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILASR 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP L+ I LN ELV A GI + L+ PF++ ++ L
Sbjct: 65 AEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQF 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ S K L K +Q +I + + + + + ++ +
Sbjct: 125 VLPSTLKKLRHLENATKHQKKRQLPEITV-KHVVLEDRSLLLYQNYDSEKEEFFDVYWIE 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ID + + + L + + + N+ + Q
Sbjct: 184 SIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQSAIL 243
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + + T FY+ +++P + + L A + FSR
Sbjct: 244 DPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFSRQI 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I Y +F Y ++ + K +L P+ A +P IL S +
Sbjct: 304 PIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARL 359
>gi|146277168|ref|YP_001167327.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555409|gb|ABP70022.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
Length = 376
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/343 (12%), Positives = 111/343 (32%), Gaps = 9/343 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY + +F L +++ ++ + + + S + +P +I+
Sbjct: 4 FDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLIS-DGQSALVFLEFSLLALPNVIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P I + L++ SELV+ +A G S ++L P ++ +++ + ++++N +
Sbjct: 63 LVLPLSAFAATIYIVNRLSQESELVVMQATGFSAFRLARPVILFGLIVAMMMIVLMNLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + +N + ++ ++I E +
Sbjct: 123 PASRATLSARSAEISENATARFLRDGEFLH-PVRGVTLYIREISETGELNDLLLVDDRDR 181
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGFQK 239
+ R+ + ++ + R T ++ M
Sbjct: 182 ARSTIYTARRALLVRTETTPRLLMIDGSAQTLTREGRRLELTRFADVTYDLGAFMKSDGP 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEF 298
S +++ A + + I P + +A +LI A++ L
Sbjct: 242 KRRVLEELSTPDLLAPTEALLAETRSTRAAALYEGHSRIAQPFLGLASSLIGFAALLLGS 301
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAA 340
+ + + ++ TI G + L P+A A
Sbjct: 302 FSRFGLWWQILFAVVLLIVVQTINVAASGVGVTDEALWPLAYA 344
>gi|209749454|gb|ACI73034.1| hypothetical protein ECs5238 [Escherichia coli]
Length = 366
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPSMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|94985285|ref|YP_604649.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94555566|gb|ABF45480.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 381
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/382 (11%), Positives = 108/382 (28%), Gaps = 34/382 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L + L ++ L + ++P +
Sbjct: 4 LTRYVTRELLPPLVAGTLLFTAILSFGYFF---ISSQWLRGVPVGLIGQWIGYQLPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ +V F L ELV ++ GI + Q+ P V + L+ V + +A
Sbjct: 61 KVLPMAVVLMTVVAFGRLATERELVAVQSGGIGLGQVARPVAVVAALVTALAVWLSLWVA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + N + ++ + +
Sbjct: 121 PRANVETRGLYWDVLTGAGLSQVVGKTVDLGDNLTLWLGGYDAAGRKLQNVRVERWAKDD 180
Query: 185 DKKNKIIHRKDADLAII-------------------------YNDKVKLKKVVEYQYGRI 219
++ +I + V E +
Sbjct: 181 PQRTTVIFADSGTFENNRLSLRGYQVYTVNYAAAARLARVPENDPAAFRTAVQEVFPNVV 240
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE--IIKKMSFSNKSNIFHNYRAE--TQFY 275
+ S+TLN+ + Q ++ + + ++ + R +
Sbjct: 241 LPEDASSTLNLDTGLSRKQTIAQYADAIGADAEGWPELITKLTAPGVSVQERQDARVNLN 300
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P + + L A +L F R + + + Y + + + + L
Sbjct: 301 RKLALPFGNLVLALAALPFALRFGR--TLGVSLGIALLIAVAYYLVFFVGLTLAGAFPRL 358
Query: 336 PVAAALIPVILTISLSILILLQ 357
P + ++ L + +L +
Sbjct: 359 PEVGVWLANLVFAGLGLWLLRR 380
>gi|206890381|ref|YP_002249742.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742319|gb|ACI21376.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 351
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/357 (12%), Positives = 120/357 (33%), Gaps = 8/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++++ + L+ + ++ + L +++ + +L P
Sbjct: 1 MKVIYKALTRELLQNIGLSIAFLNAVLIIEKLF-KLSKIFASVGIDLPNLVLLILLLQPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L+ ++ + +E+ I G+ + P + ++ FTVL+
Sbjct: 60 LLIFTIPMALLLSILLTYGRTQADNEMTIFMVSGMPYKKTFKPAIYIGLIAFFFTVLMSF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +G + + I + + Q L +
Sbjct: 120 YLAPTGVSLVREKILTILAERAPLGLEEGVFNQGFKDVTIFVKEKPDSLHLKEVV--IFD 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +I + N + L Y + +++ S I +
Sbjct: 178 ERKNDTKIVIAKGGLIKKERDNINLSLLNGKAYFNKGLTLNEVSFKEYIFRLSPNIDPIA 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ + S +E++ K+ I + + Y +PL+ + +A S+ L ++
Sbjct: 238 KKVSELSLFELVSKIQTEEVKAI----DYKLELYKRFALPLLCIVSVFLAPSLCLIVGKT 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+ Y ++ + K+G + +L+PVI+ L+ + +
Sbjct: 294 GRIG-GITVGLAIFAFYYILMIYGANLAKAGKVSAEIGSLLPVIVMAILAFTMYTRI 349
>gi|51473938|ref|YP_067695.1| hypothetical protein RT0756 [Rickettsia typhi str. Wilmington]
gi|51460250|gb|AAU04213.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 362
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 76/357 (21%), Positives = 147/357 (41%), Gaps = 5/357 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y K Y K L ++L+ + ++ ++ + + S ++P +
Sbjct: 5 KTLSLYLTKLYSKCFFIILFLLIVLLIISNIFDLLQKFKNIY-VPFSFFWRFILYKIPYL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ I+ + NL +++EL+ + GI IWQ+L + +++LGI ++NP
Sbjct: 64 LTQVSSLISFTSMLFFLRNLTKSNELIAILSSGIHIWQVLIIPCIVTLILGIICTTLLNP 123
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I+T G + L + S+ S + + I + I + T
Sbjct: 124 ISTIGLQKYAILEAKLTKKALSGGLISESGLLFFESLNEHNQIIQTQFIDVAEQKLNNIT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ID N + R DA II N K+ L +V N+ T+ + ++
Sbjct: 184 ILFIDNNNSFLKRIDALYGIIKNKKLYLNRVKV-SMKDETKSYNNLTIQTNLSINSLVNK 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S + + K ++ S + +Y + P+M++A ++A+ R
Sbjct: 243 FMRPEMVSIWALPKLINELLNSG-LSAINYQIYYYKQLFKPIMMMATVILASCFISLKQR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 302 CNAQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSLLIFFISNFIILH 358
>gi|258405420|ref|YP_003198162.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
gi|257797647|gb|ACV68584.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
Length = 395
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 119/365 (32%), Gaps = 12/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P L R FK + L + + ++ ++ + ++ L P
Sbjct: 2 LPRRLSREIFKELVYVFSLCLGSFLA-LLLVGRLLKLRELFLSQDVALLDLGQLFLYLSP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P +++ + F ++ ELV RA G+S+WQLL ++ +L + +
Sbjct: 61 FFLLLLLPIASMLSVFLTFLRMSTDRELVALRAAGLSLWQLLPVTLLFLLLCTAANIGIG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G I + + Q + +
Sbjct: 121 IYGVSWGMDNFRATILDMAKTRTQLVLQPGVFNQDFPGLTIFARQVDRETGDLSTVFVED 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGF 237
+ I+ + + + L+ Y++ R I + +D
Sbjct: 181 TSRGQGAIGIVAPQGSLTTDTRKGQVVFSLRNGRLYRHDRDSASVLGFGEYRIALDLDKI 240
Query: 238 -------QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+K ++ + + + + + + + + + + + +PL +A+ +
Sbjct: 241 ISGVELEEKRPKEMSWTRLMDYRHQADLAQTRDATFDRKVDVETHKRLALPLACLALGIF 300
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ F + + + Y + + S G++G L P P IL + L
Sbjct: 301 AMPLAALFEGLKRH-FGFLVSLGLFLVYYALFSAGLSLGETGTLAPAIGLWAPNILFMGL 359
Query: 351 SILIL 355
++
Sbjct: 360 GGILF 364
>gi|254481219|ref|ZP_05094464.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
gi|214038382|gb|EEB79044.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
Length = 369
Score = 80.5 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/358 (13%), Positives = 114/358 (31%), Gaps = 10/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY L + ++++ + + + + + + R+P
Sbjct: 1 MKIL-RYLALDVLVHMVAVSFVLLVIIISGRFVKYLAEAA-VGDLAAGILVPVLLYRLPG 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IIP + ++ + L SE+VI A GIS +L +V ++L+ + +
Sbjct: 59 FMELIIPLGLFIGILMSYGRLYVESEMVIFTATGISPQRLAGYTLVPALLVMVIVGGLSL 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I+ G L+ + + + + + A H +
Sbjct: 119 FISPLGAARSEALLHAPESSQGINALAAGRFQTRRSNDMVSYAQAVDANGVMHSVFLSQA 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + A + D + +E + G + + + F +
Sbjct: 179 EREDDGELTMLLTIASEGEVKFDSATGARYLELRNGVRYVGYPGDLDYQVVSFEQFGELI 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + ++ + IP+M+ + +IA +S R
Sbjct: 239 PEPEGGVRTADPVDGRTTAHLLSSELLEDKAALHWRLSIPVMVPIVAIIAMCMSHTNHRR 298
Query: 302 NQPRIIVAYGIFSGFMLYTII---TIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ I +A T++ + G+ G + L +++++ +L
Sbjct: 299 GRY-IKMAPAFILYLGYLTLLANARSGIASGEGGTVN----IWAVHALFLAVALAMLY 351
>gi|157157059|ref|YP_001465770.1| putaitve permease [Escherichia coli E24377A]
gi|157079089|gb|ABV18797.1| putaitve permease [Escherichia coli E24377A]
Length = 366
Score = 80.1 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIIL 345
>gi|167626384|ref|YP_001676884.1| hypothetical protein Fphi_0162 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596385|gb|ABZ86383.1| conserved membrane protein of unknown function [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 360
Score = 80.1 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/349 (11%), Positives = 99/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + Q I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQ-AYSQGLGIDSIIKFVILTIPGNV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A G++ Q++ + L I T L + I
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ ++ + ++ T +
Sbjct: 121 NPLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKSGNTLKDVFLYMATDNS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + V Y + + F
Sbjct: 181 DEYKVVTAPVAEVIIDKGAA-YVDFHDAHIYTKEPKTYEH-TYDTAKNAIYTIFDTSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + +F+ I + ++ +L+A ++ R N+
Sbjct: 239 YNHDKVDRLYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVASLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + G L +P I I +I
Sbjct: 299 YAK-LLPSVVVLAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFIIYAI 346
>gi|254374090|ref|ZP_04989572.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
gi|151571810|gb|EDN37464.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
Length = 360
Score = 80.1 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/349 (9%), Positives = 99/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYKASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F+ I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKANGTAYKAEFFGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + +G + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANGSVPVWIGFWLPHIFFTIFAV 346
>gi|332296606|ref|YP_004438529.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
gi|332179709|gb|AEE15398.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
Length = 365
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 120/363 (33%), Gaps = 11/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + W Y K +L + LL L+ + + + S GA LAA +P
Sbjct: 5 LNKLFWSYILKDFLPFFFFGLLAFSGLMLAGESMRTIKLVADNQG-SFLTGAKLAACGLP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P TL+ ++ ++ ELV R+ G+SI++ PF++ I+ +
Sbjct: 64 YSIAFAFPMATLLGVLMAVSRISSNWELVALRSAGLSIFKFSLPFIIIGIIFSTVSFFTF 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +I + + + + + Q FI K +
Sbjct: 124 EKLAYPLLDKSRYIIAKDLKKELNTERQNVLFKLPPDSPQPKFIIFAKDYKPATMSLQDV 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM------ 234
I + + ++ K + Y++ + I I
Sbjct: 184 YIQEFDNEFLKRTIYSSELSFTGNRWVASKGLSYEFSKDGIIVGRLDFEKLIVPLGVLPQ 243
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+++ SF+E++ +S S Y Y + +P A I +
Sbjct: 244 TVKALPTKKPRDMSFFELLSYLSNSKDIVDKSLY---VDLYNKLSLPFACFAFACIGVAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + I I + Y I ++ + G L P A+ IL I +
Sbjct: 301 GIASERKSS-AIGFGIAITTVLFYYLIFSLFTTLGYMSYLPPFIASFGADILITIFGIFM 359
Query: 355 LLQ 357
+++
Sbjct: 360 VVK 362
>gi|15804853|ref|NP_290894.1| hypothetical protein Z5873 [Escherichia coli O157:H7 EDL933]
gi|15834492|ref|NP_313265.1| hypothetical protein ECs5238 [Escherichia coli O157:H7 str. Sakai]
gi|16132083|ref|NP_418682.1| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|26251170|ref|NP_757210.1| hypothetical protein c5362 [Escherichia coli CFT073]
gi|30065452|ref|NP_839623.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
gi|56480551|ref|NP_709940.2| hypothetical protein SF4228 [Shigella flexneri 2a str. 301]
gi|82546486|ref|YP_410433.1| hypothetical protein SBO_4179 [Shigella boydii Sb227]
gi|89110977|ref|AP_004757.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. W3110]
gi|91213817|ref|YP_543803.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
gi|110644620|ref|YP_672350.1| putative membrane protein YjgP [Escherichia coli 536]
gi|117626605|ref|YP_859928.1| hypothetical protein APECO1_2133 [Escherichia coli APEC O1]
gi|157163736|ref|YP_001461054.1| putative permease [Escherichia coli HS]
gi|168749567|ref|ZP_02774589.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|168754843|ref|ZP_02779850.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|168760516|ref|ZP_02785523.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|168766552|ref|ZP_02791559.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC4486]
gi|168774017|ref|ZP_02799024.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|168782788|ref|ZP_02807795.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|168784911|ref|ZP_02809918.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC869]
gi|168797841|ref|ZP_02822848.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|170021731|ref|YP_001726685.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|170083700|ref|YP_001733020.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
gi|170681521|ref|YP_001746665.1| putative permease [Escherichia coli SMS-3-5]
gi|191170651|ref|ZP_03032203.1| putative permease [Escherichia coli F11]
gi|193063666|ref|ZP_03044754.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|193069837|ref|ZP_03050787.1| putative permease [Escherichia coli E110019]
gi|195937287|ref|ZP_03082669.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|208807252|ref|ZP_03249589.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208812743|ref|ZP_03254072.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208819114|ref|ZP_03259434.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209395855|ref|YP_002273806.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|209921758|ref|YP_002295842.1| hypothetical protein ECSE_4567 [Escherichia coli SE11]
gi|215489603|ref|YP_002332034.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217324429|ref|ZP_03440513.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218556808|ref|YP_002389722.1| hypothetical protein ECIAI1_4492 [Escherichia coli IAI1]
gi|218561419|ref|YP_002394332.1| hypothetical protein ECS88_4848 [Escherichia coli S88]
gi|218698009|ref|YP_002405676.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218707867|ref|YP_002415386.1| hypothetical protein ECUMN_4793 [Escherichia coli UMN026]
gi|227886685|ref|ZP_04004490.1| inner membrane protein [Escherichia coli 83972]
gi|237703936|ref|ZP_04534417.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|238903362|ref|YP_002929158.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|253775116|ref|YP_003037947.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164186|ref|YP_003047296.1| inner membrane protein [Escherichia coli B str. REL606]
gi|254796281|ref|YP_003081118.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
gi|256019913|ref|ZP_05433778.1| conserved inner membrane protein [Shigella sp. D9]
gi|260847092|ref|YP_003224870.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|260871013|ref|YP_003237415.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|261225380|ref|ZP_05939661.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255367|ref|ZP_05947900.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
gi|291285673|ref|YP_003502491.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
gi|293402886|ref|ZP_06646983.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1412]
gi|293407981|ref|ZP_06651821.1| conserved hypothetical protein [Escherichia coli B354]
gi|293417761|ref|ZP_06660383.1| lipopolysaccharide export system permease lptF [Escherichia coli
B185]
gi|293476564|ref|ZP_06664972.1| lipopolysaccharide export system permease lptF [Escherichia coli
B088]
gi|297519576|ref|ZP_06937962.1| Inner membrane protein yjgP [Escherichia coli OP50]
gi|298378412|ref|ZP_06988296.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1302]
gi|300818514|ref|ZP_07098723.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300821368|ref|ZP_07101516.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300899411|ref|ZP_07117666.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300906109|ref|ZP_07123828.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300923939|ref|ZP_07139949.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300950209|ref|ZP_07164150.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300957116|ref|ZP_07169357.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300972386|ref|ZP_07171919.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300988161|ref|ZP_07178581.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|301024383|ref|ZP_07188071.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|301050053|ref|ZP_07196965.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|301304686|ref|ZP_07210794.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301643391|ref|ZP_07243441.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|306815521|ref|ZP_07449670.1| Inner membrane protein yjgP [Escherichia coli NC101]
gi|307140956|ref|ZP_07500312.1| Inner membrane protein yjgP [Escherichia coli H736]
gi|309792902|ref|ZP_07687330.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|331645010|ref|ZP_08346127.1| inner membrane protein YjgP [Escherichia coli H736]
gi|331650394|ref|ZP_08351466.1| inner membrane protein YjgP [Escherichia coli M605]
gi|331656095|ref|ZP_08357083.1| inner membrane protein YjgP [Escherichia coli M718]
gi|331660842|ref|ZP_08361774.1| inner membrane protein YjgP [Escherichia coli TA206]
gi|331665930|ref|ZP_08366824.1| inner membrane protein YjgP [Escherichia coli TA143]
gi|331671402|ref|ZP_08372200.1| inner membrane protein YjgP [Escherichia coli TA280]
gi|331680399|ref|ZP_08381058.1| inner membrane protein YjgP [Escherichia coli H591]
gi|331681281|ref|ZP_08381918.1| inner membrane protein YjgP [Escherichia coli H299]
gi|332281053|ref|ZP_08393466.1| conserved hypothetical protein [Shigella sp. D9]
gi|84027984|sp|P0AFA0|LPTF_ECO57 RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027985|sp|P0AF99|LPTF_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027986|sp|P0AF98|LPTF_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027987|sp|P0AFA1|LPTF_SHIFL RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|12519273|gb|AAG59460.1|AE005658_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111602|gb|AAN83784.1|AE016771_295 Hypothetical protein yjgP [Escherichia coli CFT073]
gi|537103|gb|AAA97158.1| ORF_o366 [Escherichia coli str. K-12 substr. MG1655]
gi|1790712|gb|AAC77218.1| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|13364716|dbj|BAB38661.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|30043716|gb|AAP19435.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
gi|31323180|gb|AAP43524.1| YjgP [Escherichia coli B]
gi|56384102|gb|AAN45647.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|81247897|gb|ABB68605.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85677008|dbj|BAE78258.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
W3110]
gi|91075391|gb|ABE10272.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
gi|110346212|gb|ABG72449.1| putative membrane protein YjgP [Escherichia coli 536]
gi|115515729|gb|ABJ03804.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157069416|gb|ABV08671.1| putative permease [Escherichia coli HS]
gi|169756659|gb|ACA79358.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|169891535|gb|ACB05242.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519239|gb|ACB17417.1| putative permease [Escherichia coli SMS-3-5]
gi|187770319|gb|EDU34163.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|188016154|gb|EDU54276.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|188999811|gb|EDU68797.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|189357793|gb|EDU76212.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|189364084|gb|EDU82503.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC4486]
gi|189368987|gb|EDU87403.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|189374999|gb|EDU93415.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC869]
gi|189379426|gb|EDU97842.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|190908875|gb|EDV68462.1| putative permease [Escherichia coli F11]
gi|192930653|gb|EDV83259.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|192956891|gb|EDV87344.1| putative permease [Escherichia coli E110019]
gi|208727053|gb|EDZ76654.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208734020|gb|EDZ82707.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208739237|gb|EDZ86919.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209157255|gb|ACI34688.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|209749448|gb|ACI73031.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749450|gb|ACI73032.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749452|gb|ACI73033.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749456|gb|ACI73035.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209915017|dbj|BAG80091.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215267675|emb|CAS12133.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217320650|gb|EEC29074.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218354741|emb|CAV01804.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218363577|emb|CAR01234.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI1]
gi|218368188|emb|CAR05996.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli S88]
gi|218434964|emb|CAR15905.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli UMN026]
gi|222036033|emb|CAP78778.1| Inner membrane protein yjgP [Escherichia coli LF82]
gi|226901848|gb|EEH88107.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227836258|gb|EEJ46724.1| inner membrane protein [Escherichia coli 83972]
gi|238860249|gb|ACR62247.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|242379781|emb|CAQ34608.1| LptF, subunit of LptABCFG ABC transporter [Escherichia coli
BL21(DE3)]
gi|253326160|gb|ACT30762.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976089|gb|ACT41760.1| conserved inner membrane protein [Escherichia coli B str. REL606]
gi|253980245|gb|ACT45915.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
gi|254595681|gb|ACT75042.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
TW14359]
gi|257762239|dbj|BAI33736.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|257767369|dbj|BAI38864.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|281181359|dbj|BAI57689.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281603540|gb|ADA76524.1| hypothetical protein SFxv_4611 [Shigella flexneri 2002017]
gi|290765546|gb|ADD59507.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
gi|291321017|gb|EFE60459.1| lipopolysaccharide export system permease lptF [Escherichia coli
B088]
gi|291429801|gb|EFF02815.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1412]
gi|291430479|gb|EFF03477.1| lipopolysaccharide export system permease lptF [Escherichia coli
B185]
gi|291472232|gb|EFF14714.1| conserved hypothetical protein [Escherichia coli B354]
gi|294490862|gb|ADE89618.1| putative permease [Escherichia coli IHE3034]
gi|298280746|gb|EFI22247.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1302]
gi|300298211|gb|EFJ54596.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|300305971|gb|EFJ60491.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|300316134|gb|EFJ65918.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300356989|gb|EFJ72859.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300396609|gb|EFJ80147.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|300402052|gb|EFJ85590.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300410965|gb|EFJ94503.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300419817|gb|EFK03128.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300450449|gb|EFK14069.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300526257|gb|EFK47326.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300528918|gb|EFK49980.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300840036|gb|EFK67796.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301078221|gb|EFK93027.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|305851183|gb|EFM51638.1| Inner membrane protein yjgP [Escherichia coli NC101]
gi|307556431|gb|ADN49206.1| putative membrane protein YjgP [Escherichia coli ABU 83972]
gi|307629337|gb|ADN73641.1| Inner membrane protein yjgP [Escherichia coli UM146]
gi|308123188|gb|EFO60450.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|309704765|emb|CBJ04116.1| putative permease [Escherichia coli ETEC H10407]
gi|312948914|gb|ADR29741.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|315255620|gb|EFU35588.1| putative inner membrane protein [Escherichia coli MS 85-1]
gi|315288386|gb|EFU47784.1| putative inner membrane protein [Escherichia coli MS 110-3]
gi|315293628|gb|EFU52980.1| putative inner membrane protein [Escherichia coli MS 153-1]
gi|315298978|gb|EFU58232.1| putative inner membrane protein [Escherichia coli MS 16-3]
gi|320639018|gb|EFX08664.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H7 str. G5101]
gi|320644388|gb|EFX13453.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H- str. 493-89]
gi|320649705|gb|EFX18229.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H- str. H 2687]
gi|320655102|gb|EFX23063.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660608|gb|EFX28069.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665535|gb|EFX32581.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H7 str. LSU-61]
gi|323380352|gb|ADX52620.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
gi|323935383|gb|EGB31731.1| inner membrane protein yjgP [Escherichia coli E1520]
gi|323950670|gb|EGB46548.1| inner membrane protein yjgP [Escherichia coli H252]
gi|323955547|gb|EGB51311.1| inner membrane protein yjgP [Escherichia coli H263]
gi|323965650|gb|EGB61104.1| inner membrane protein yjgP [Escherichia coli M863]
gi|323975396|gb|EGB70497.1| inner membrane protein yjgP [Escherichia coli TW10509]
gi|324013725|gb|EGB82944.1| putative inner membrane protein [Escherichia coli MS 60-1]
gi|324019238|gb|EGB88457.1| putative inner membrane protein [Escherichia coli MS 117-3]
gi|324118822|gb|EGC12714.1| inner membrane protein yjgP [Escherichia coli E1167]
gi|331035985|gb|EGI08223.1| inner membrane protein YjgP [Escherichia coli H736]
gi|331040788|gb|EGI12946.1| inner membrane protein YjgP [Escherichia coli M605]
gi|331046449|gb|EGI18539.1| inner membrane protein YjgP [Escherichia coli M718]
gi|331051884|gb|EGI23923.1| inner membrane protein YjgP [Escherichia coli TA206]
gi|331056981|gb|EGI28975.1| inner membrane protein YjgP [Escherichia coli TA143]
gi|331071247|gb|EGI42604.1| inner membrane protein YjgP [Escherichia coli TA280]
gi|331071862|gb|EGI43198.1| inner membrane protein YjgP [Escherichia coli H591]
gi|331081502|gb|EGI52663.1| inner membrane protein YjgP [Escherichia coli H299]
gi|332103405|gb|EGJ06751.1| conserved hypothetical protein [Shigella sp. D9]
Length = 366
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|194437844|ref|ZP_03069939.1| putative permease [Escherichia coli 101-1]
gi|256025197|ref|ZP_05439062.1| hypothetical protein E4_17633 [Escherichia sp. 4_1_40B]
gi|260858413|ref|YP_003232304.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|301325194|ref|ZP_07218718.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|331671169|ref|ZP_08372002.1| inner membrane protein YjgP [Escherichia coli TA271]
gi|194423340|gb|EDX39332.1| putative permease [Escherichia coli 101-1]
gi|257757062|dbj|BAI28564.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|300847955|gb|EFK75715.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|323945994|gb|EGB42032.1| inner membrane protein yjgP [Escherichia coli H120]
gi|323970485|gb|EGB65744.1| inner membrane protein yjgP [Escherichia coli TA007]
gi|331061758|gb|EGI33684.1| inner membrane protein YjgP [Escherichia coli TA271]
Length = 366
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMCTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|118497255|ref|YP_898305.1| membrane protein of unknown function [Francisella tularensis subsp.
novicida U112]
gi|194323557|ref|ZP_03057334.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
novicida FTE]
gi|208779048|ref|ZP_03246394.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
gi|254372628|ref|ZP_04988117.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423161|gb|ABK89551.1| conserved membrane protein of unknown function [Francisella
novicida U112]
gi|151570355|gb|EDN36009.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
gi|194322412|gb|EDX19893.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
novicida FTE]
gi|208744848|gb|EDZ91146.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
Length = 360
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/349 (9%), Positives = 99/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F+ I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKTNGTAYKAEFFGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + +G + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANGSVPVWIGFWLPHIFFTIFAV 346
>gi|311281181|ref|YP_003943412.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
gi|308750376|gb|ADO50128.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
Length = 366
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI L +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAALNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q S+ +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNSVLFIESVDGKKFRDVFLAQIRTK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ ++ + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGNITQQKDGSQVVHLNEGTRFEGTAMLRDFRVTDFKNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + A + ++ + + + M L+ +S+ R +
Sbjct: 236 HQTVSLDPSDTEQMNMLTLWNTDTNGARAELHWRLTLVATVFIMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T ++S G+ G L P+ + +L +L++ +
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIRSNGEKGKLDPMVWMWVVNLLYFALAVAL 345
>gi|46143410|ref|ZP_00135308.2| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208575|ref|YP_001053800.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae L20]
gi|307246019|ref|ZP_07528101.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307248123|ref|ZP_07530151.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307250354|ref|ZP_07532303.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307252738|ref|ZP_07534629.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307255000|ref|ZP_07536818.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257154|ref|ZP_07538926.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|307259436|ref|ZP_07541161.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|307261582|ref|ZP_07543250.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|307263771|ref|ZP_07545377.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|126097367|gb|ABN74195.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306852954|gb|EFM85177.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306855300|gb|EFM87475.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306857629|gb|EFM89736.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306859770|gb|EFM91792.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306861873|gb|EFM93849.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306864316|gb|EFM96227.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306866372|gb|EFM98235.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306868705|gb|EFN00514.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306870892|gb|EFN02630.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 343
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/328 (14%), Positives = 101/328 (30%), Gaps = 7/328 (2%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
+ F L + N L +P + Q ++P V ++ S
Sbjct: 1 MFFSQQLITVLNSAVS-GKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAES 59
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
E+ + RA GI L SI V + + +++ + K N
Sbjct: 60 EITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSA 119
Query: 147 SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV 206
+M + + I E + D D++ K +
Sbjct: 120 LSAGQFMTAGG----YVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLP 175
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+++ + + D +Q + S +++++ F+
Sbjct: 176 NGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQS 235
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
A+ + + + L + M L+A +S R + V + + + + + +K
Sbjct: 236 -NEAKAELQWRFALILAVPLMALLAVPMSSVNPRQGRFAK-VIPAVLLYLIYFLLQSSLK 293
Query: 327 SFGKSGILLPVAAALIPVILTISLSILI 354
S G SG L + I L++++
Sbjct: 294 SSGASGKLDATLLMPLVSIAFFILAMVM 321
>gi|319760186|ref|YP_004124124.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
gi|318038900|gb|ADV33450.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
Length = 363
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 120/358 (33%), Gaps = 2/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K L + L + L +I L + E YSI +P
Sbjct: 1 MHKILDMYIKKSILSSISIVFLILISLSSIIRLIDGLRNF-EKKTYSIIEIFFCTFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +ELVI + G+S +Q+ V S+ + I +++
Sbjct: 60 KDFELFLPISILLGGLLGLGVLEIRNELVIMKVFGLSYFQITFSVVKVSVFILILHIMLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + N I N + +
Sbjct: 120 EWLLPGSQYMLYIYQGHKEYNSYFFPEKNKNLWIIDNNGFVCIEYMPTTNNVFGVNLYYL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + I + + + ++ + + N + D
Sbjct: 180 TKDKKIEKIIYFKDATYINKSWFVSSAIELNFSDKTHIVNRTVFHYKWNTILTPDLLSII 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S ++ + + N N Y E F+ I+ PL + M +I+ S
Sbjct: 240 TTNPRVLSVSKLFSCIKYFNGINQNSQY-YELIFWNKILSPLTGMIMLIISLLYSFGPFS 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + +G GF+ Y + F + P+ ++IPV+L I ++I+I+ K
Sbjct: 299 KKKIGFRLFFGSIIGFLFYVLHQFFDVFCVMHNIYPLVGSIIPVLLFIVINIVIVFYK 356
>gi|225848308|ref|YP_002728471.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643577|gb|ACN98627.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 355
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 126/361 (34%), Gaps = 15/361 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY ++ L ++ ++L EI + + + ++P
Sbjct: 1 MKILDRYIYEKLTVYFLIVFPAFSLVSVFVELIEILRK---SKVQDFNLILIYILAKLPE 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+P ++ VV + ++ E+ GISI + V+ SI + VL +
Sbjct: 58 NFYYIVPISLIISAFVVANEIVKSREIYPILLNGISINYISTRIVIFSIFISFLQVLNLE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K+ ++ Q N + I + + FI E + ++
Sbjct: 118 VLMPKSNKVYVET-YQKLKNQPLEDEKAIAYNLWLRLDEKNFIYFDFFDLEKKVGKEIVL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
I++D+ +R +A+ + ++ + L + E I + + + + +
Sbjct: 177 ISMDENFLPTNRWEAESFKVESNSLTLLRGKEITVKSIEDVKVSKFDEKKVYVSVDPEKI 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K ++ S ++ K + + ++FY + + +T+ A
Sbjct: 237 KKLIKEKKPVSITQLYKVAKIAQNYG-YDASYFWSKFYQKLATVISPFILTVFAVGFIWR 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ I G S + + +I+ + G + +L +S+ ++ +
Sbjct: 296 KNK-----FITLAGFLSTVLYWYGTSIVSAIASVGNIPYYF-IFSFDVLFLSIGFYLMFK 349
Query: 358 K 358
Sbjct: 350 T 350
>gi|126739399|ref|ZP_01755092.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
gi|126719499|gb|EBA16208.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
Length = 376
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 114/356 (32%), Gaps = 9/356 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + +V + +++ S A +P +I+
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWVNRAVVLFDRLIG-DGQSALVFVEFTALTLPNLIRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P ++ V L SEL + RA G S WQ+ P +V ++ + + + +
Sbjct: 64 VLPVAVFASSVWVTNRLQSESELTVLRATGTSPWQMARPALVFGLVAALMMSALTHVLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW----EDFTS 181
+ ++ N + ++ + + ++ D S
Sbjct: 124 ASISQLEIREREVSRNVTARLLTEGNFLHPAKGITFYIRKIESDGTLKDVFLSDRRDPNS 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ +D + + ++ + + + + +I S
Sbjct: 184 SVTYTGSEAFLVRDGEKTHLIMVNGMAQRFTKDTRRLSTTNFSDFSYDISALARKSADRS 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFS 299
+ EI+ ++ + + + L+ V + LI S + FS
Sbjct: 244 RNIRAIPSLEILTAREQITNTDGYSAGALAEELHLRFARALVCVTVALIGFSALMLGTFS 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R R + + + + + K L P+ +P + + ++ L
Sbjct: 304 RFGVWRQALLAFLLLILVEGLRGVVSEPVLKDPTLWPLI--YLPAVTGLIIAAGFL 357
>gi|157368808|ref|YP_001476797.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
gi|157320572|gb|ABV39669.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
Length = 364
Score = 80.1 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 125/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L + + + + L A VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVD-GDVPTNLVLSLLALGVPKMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++ + + +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALFTSVIAAANVFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + K N + + +FIG K N+++
Sbjct: 121 GPWASRYQDVVVSEAKANPSIAGLAEGQFKTSQDGNAVLFIGNVKGSTFNNVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + + + ++ + ++ + +
Sbjct: 181 GNQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVT 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + A +F++ + + L +V M L+ +S+ R +
Sbjct: 241 VDGNQAEQM-----SMKTLLASDDPDARAEFHWRLTLVLSVVIMALLVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + + T ++S G G L P+ + ++++ +
Sbjct: 296 V-LSMLPAILLYLIFFLLQTSLRSNGGKGKLDPMVWLWVVNAAYFAIALAL 345
>gi|163853056|ref|YP_001641099.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218531866|ref|YP_002422682.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|254562993|ref|YP_003070088.1| permease [Methylobacterium extorquens DM4]
gi|163664661|gb|ABY32028.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218524169|gb|ACK84754.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|254270271|emb|CAX26267.1| putative permease [Methylobacterium extorquens DM4]
Length = 389
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 107/356 (30%), Gaps = 6/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAK-GQTLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PF + + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + D++ + + + + + N F ++
Sbjct: 123 PSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKREAG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKF 240
+ R V K + Q +++ +
Sbjct: 183 KAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDSET 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ RS ++ R + + + L +A+ IA + +
Sbjct: 243 VYKPRERSTMALL-FPDTGEGYYRLQKGRFRAELHDRLSAWLYPLALAFIAFAALGDPRT 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ Q R + G G + I S V A + I+LS L++
Sbjct: 302 TRQGRGLAVAGAVVGVIALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLIF 357
>gi|83746689|ref|ZP_00943738.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|207721411|ref|YP_002251852.1| permease protein [Ralstonia solanacearum MolK2]
gi|207742608|ref|YP_002259000.1| permease protein [Ralstonia solanacearum IPO1609]
gi|83726642|gb|EAP73771.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|206586570|emb|CAQ17157.1| permease protein [Ralstonia solanacearum MolK2]
gi|206594002|emb|CAQ60929.1| permease protein [Ralstonia solanacearum IPO1609]
Length = 387
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/350 (10%), Positives = 103/350 (29%), Gaps = 10/350 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + + I S + +L + ++
Sbjct: 22 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAAN-GEASPNDVLLLIGLATLGYLAILLC 80
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++V + SE+V+ G+S+ + P + S+ + L+
Sbjct: 81 ATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGWPWAN 140
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSITIDKK 187
+ +++ +++ ++ +FI G + +
Sbjct: 141 QQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEADKIG 200
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + + V L K Y+ +D + +
Sbjct: 201 VALAKTGEFKTMPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVDAN-- 258
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ K + + + + I +PL+ + LIA ++ R + +
Sbjct: 259 ----LPTKSRPTTELLSNPTPENLGELVWRIGLPLLALNFVLIAVPLAYVNPRLGRYTPM 314
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + ++ + +++ G + + A P+ L + ++L +
Sbjct: 315 IF-AVLIYLTYSNLLNLSQAWVAQGKINAMLA-WWPIHLLAFICAVLLFR 362
>gi|94500485|ref|ZP_01307016.1| predicted Permease [Oceanobacter sp. RED65]
gi|94427275|gb|EAT12254.1| predicted Permease [Oceanobacter sp. RED65]
Length = 340
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/312 (7%), Positives = 97/312 (31%), Gaps = 9/312 (2%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
P +Q I+P + ++V+ ++ +E+ + A G Q+
Sbjct: 13 IPPEAVFYTILYNSPGFLQLILPLGFYISILLVYGRMHSENEMTVLYATGFGPKQVFRIT 72
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ ++ + + +A + +Q+ + + + + + +
Sbjct: 73 MAPVTVMMLLIGFLSLYLAPTAADKLDRYLQEQQQESEFSFVTPGRFNALGKGGEKVS-Y 131
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
A+ + + + + + + ++L + + +
Sbjct: 132 AEDLSADRKQMQQVFMADGNVLLLAESGQQFVDPNSGSRYLELNNGKRFSGVPGDPNFEA 191
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ + + + A ++ + + + + ++ I + +++
Sbjct: 192 MSFDRYAVKIAEESDVAKKARYEAVSTMELLD-------REHRVYKARLHYRIGLFILVP 244
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ ++A +S R + ++ + + YT + + + + G
Sbjct: 245 IIVIMAFPLSHVKPRQGRYGKMLP-AVVLYMVYYTTLITARKWMEQGDTPEWLGLWWLHG 303
Query: 346 LTISLSILILLQ 357
+ +S+ ++++
Sbjct: 304 IFLSIGLMLMYW 315
>gi|194426540|ref|ZP_03059094.1| putative permease [Escherichia coli B171]
gi|300928087|ref|ZP_07143635.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|194415279|gb|EDX31547.1| putative permease [Escherichia coli B171]
gi|300463884|gb|EFK27377.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|323940179|gb|EGB36373.1| inner membrane protein yjgP [Escherichia coli E482]
Length = 366
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAINVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|74314740|ref|YP_313159.1| hypothetical protein SSON_4446 [Shigella sonnei Ss046]
gi|254037284|ref|ZP_04871361.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|300916357|ref|ZP_07133099.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300935933|ref|ZP_07150886.1| putative inner membrane protein [Escherichia coli MS 21-1]
gi|73858217|gb|AAZ90924.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|226840390|gb|EEH72392.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|284924431|emb|CBG37556.1| putative permease [Escherichia coli 042]
gi|300416317|gb|EFJ99627.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300458869|gb|EFK22362.1| putative inner membrane protein [Escherichia coli MS 21-1]
Length = 366
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 120/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ + +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVV 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ RA + + I + + M L+ +S+ R +
Sbjct: 241 LDPNDTDQM-----DMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|89891367|ref|ZP_01202873.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
gi|89516398|gb|EAS19059.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
Length = 481
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 1/163 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY ++KT L + M ++ + + + + + A +P+
Sbjct: 1 MKILDRYILTSFIKTFLSVFIVIMFILILQAIWLYIKDLAGK-DLDMITIAKFMMYTIPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P ++ +I+VF N+ E ++ GIS+ + + ++ LG+ + N
Sbjct: 60 IVPLALPLSIILASIMVFGNMAENYEFAAMKSNGISLQRAMRSLMIVVGTLGVTSFFFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+ G +L + ++ + + Q+ + +
Sbjct: 120 TVIPWGHFKQGNLRRNIVNSKPAMAIGVGNFNQLGDINIKVDQ 162
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/274 (7%), Positives = 62/274 (22%), Gaps = 6/274 (2%)
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+ + + + ++L + ++ ++ + D
Sbjct: 182 KRNGNYTVIKSKKGELKSSLKSNIIQLVLTDGNYYDDLFPENAQKRRSSPFVRSYFDTYT 241
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
N + E D + + H+
Sbjct: 242 LNVDVSGLNNTDLNKADVTDNHRMLKIHELQTSIDSFTTKFNDNLSFYHKGQHKKWAPEL 301
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
K ++ + + ++ +Q S + + S +
Sbjct: 302 MKSRITDTITPGNITDNFISELKIYDQRRTIENTINKLKQQRSALNNRLFQLSEESKR-- 359
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ E + V+ + + I A + R + + + I
Sbjct: 360 ---IAKHEIEIQKKFVLGAACIILFFIGAPLGA-IIRKGGMGLPLVIATLFFLTYHFINI 415
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G A + ++ L IL+ +
Sbjct: 416 FAEKSAVEGAFPTWLGAWMGTLIIFPLGILLTYR 449
>gi|82779327|ref|YP_405676.1| hypothetical protein SDY_4285 [Shigella dysenteriae Sd197]
gi|81243475|gb|ABB64185.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 366
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAIILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|323960302|gb|EGB55943.1| inner membrane protein yjgP [Escherichia coli H489]
Length = 366
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|325110017|ref|YP_004271085.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
gi|324970285|gb|ADY61063.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
Length = 392
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/392 (10%), Positives = 111/392 (28%), Gaps = 40/392 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L G +L+ + + + + +
Sbjct: 1 MKLLQRYITMELFRVFAMVLTGISVLLVFVGVFQQ----ASENGLGAMEVIQILPYVLYS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L+ VV+ + EL +RA GI++ L+ P ++ +L + +L+ +
Sbjct: 57 LLPITIPATMLLTVTVVYGRMAGDQELTAARAAGINLLSLIWPSLLMGAMLSVLALLLTD 116
Query: 122 PIATSGEKIGIDL----------------------------------IQQWKDNGDKQKS 147
+ + + + +
Sbjct: 117 QVIPWSIQKIQETVLVKMEKIFLDQLRADHQFVESNQGLAITVIDVQDKTLIKPTIRYTP 176
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
D I I ++ I + ++ I + + + + K
Sbjct: 177 DNGQIFTIQAESARIRFNIQERTAWIKIVGGYINMDDGHGAWIREEEYPFPLPMVDKQPK 236
Query: 208 LKK--VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ V E I + + ++ +
Sbjct: 237 ARHMAVKEISEELEEITATRRQQESHRVLARSSHLLTGHFEQLAMSSFVELVQQQHVDNQ 296
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
R T+++ + L+ + S+ ++ + F+ Y ++ +
Sbjct: 297 RVDRLSTEYHSRFALAGSCFFFVLVGSPFSIMQAKRQFLTSFFMVFMPIVFLYYPVVMLA 356
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ K+G++ P + I + T + I +L +
Sbjct: 357 MNQSKNGMVPPESVMWIANVATGVIGIYLLRR 388
>gi|75675869|ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
gi|74420739|gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
Length = 390
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 118/360 (32%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + +Y F+ L + + L+ ++++ + + +I + + +P+
Sbjct: 1 MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITSLAIPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 60 LVLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G + + + + + ++ I ++ P + F
Sbjct: 120 YLAPDGMRRLKQWDAEITADVLANVLQPGRF---AQLDPNLTIRIRERQPGGQLAGIFID 176
Query: 182 ITIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++ D + + L++ + + + ++
Sbjct: 177 DRRNSNERLSIIADHGTVMKNDQGSFLILEDGHLERFETGKREPAMVAFDRYAFDMSKFS 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ R +E+I + + + + P+ A
Sbjct: 237 NRGHDVVYGIRERYLWELIAP-DEKDPLVQQLRGQFRAELHDRFTAPIYPFAFAA-LTFA 294
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L R+ + + G ++ + + + P+AA L ++L ++ I +
Sbjct: 295 FLGSPRTTRQSRNFSMGAAIA-AVFGLRMAGFALSVMTVKSPMAALLQYLLLFGAIGISL 353
>gi|146313281|ref|YP_001178355.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
gi|145320157|gb|ABP62304.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
Length = 366
Score = 79.7 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/351 (14%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q S+ +FI + N ++
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQASDGSSVLFIESVDGSRFNDVFLAQIRTK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ LA + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAVVG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + ++ + + + M L+ +S+ R +
Sbjct: 236 HQNVALDPTDTEQMDMRTLINTDTNRARAELHWRLTLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + P+ L + L++++
Sbjct: 296 V-LSMLPAMLLYLVYFLLQTSIKSNGGKGKIDPMIWTWAVNGLYLLLAVVL 345
>gi|218692648|ref|YP_002400860.1| hypothetical protein ECED1_5114 [Escherichia coli ED1a]
gi|218430212|emb|CAR11213.2| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli ED1a]
gi|324005134|gb|EGB74353.1| putative inner membrane protein [Escherichia coli MS 57-2]
Length = 366
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 120/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMSTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|123440874|ref|YP_001004865.1| hypothetical protein YE0501 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160137|ref|YP_004296714.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122087835|emb|CAL10621.1| putative membrane protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607297|emb|CBY28795.1| putative permease [Yersinia enterocolitica subsp. palearctica Y11]
gi|325664367|gb|ADZ41011.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859699|emb|CBX70035.1| lipopolysaccharide export system permease protein lptF [Yersinia
enterocolitica W22703]
Length = 364
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/351 (11%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + +Y + ++ + Q
Sbjct: 181 GNQRPSVVVADSGYMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + ++ + H A +F++ + + + ++ M L+ +S+ R +
Sbjct: 241 QNNNAADQM-----TMKQLWRSHQPDARAEFHWRLTLIVSVIVMALLVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S SG L P ++L++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNASSGKLDPSIWMWAVNGAYLALAVIL 345
>gi|257095656|ref|YP_003169297.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048180|gb|ACV37368.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 359
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 40/356 (11%), Positives = 107/356 (30%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + ++ L + N+ + + A L +
Sbjct: 2 IFQRAVRREFAHAASGIFTALFAIMVTTQLIRLLNEAAQ-GGVAPDAVAALLGFASLNYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V ++ R SE+V+ + G+ + + P +V +I L + +
Sbjct: 61 PPLLSLSMFVAILLTLSRCYRDSEMVVWFSSGLPLTAWIRPVLVFAIPLVATIAALSFFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
+ + + D + + + S + +F G + + +
Sbjct: 121 SPWAVSQSAEYRGKLSIRKDAGEVSPGTFHESSAGDRVVFVEGIAEDTSQVRNVFVSETK 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ ++A + + L+ Y+ + ++
Sbjct: 181 EGRVGVTMAVTGHQEIAANGDRFIVLQDGRRYELAPASPEVRILEYVRYAVRLETKEARG 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + + + + + IP V M L+A +S R+
Sbjct: 241 ITPTPKSMPLRELL-------PVDLPAYRAELLWRLSIPCSAVVMALLAIPLSFVNPRAG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + I + ++TI + + SG + + +L +SL L+ +
Sbjct: 294 RSA-NMLLAILVYLIYNNLLTISQGWVASGKVSFPVGLMTVHLLMLSLLPLLFYHR 348
>gi|258544323|ref|ZP_05704557.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
gi|258520403|gb|EEV89262.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
Length = 352
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 14/359 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL+RY + L L L + ++ L+ + N ++S +L +
Sbjct: 1 MP-ILYRYLIRETLAVFLATNLILLAILLSFRLSTLL-AAAAAGNMALSAVWMLIGLQAV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R E+ + A GI+ + +I +G+ + +
Sbjct: 59 RFLVILMPLAFVLAAVMTLGRLYRDHEISAALACGIAPRHQTRALLACAIPIGLLLLTLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L QQ + + + I
Sbjct: 119 MSVLPRVYRGQEALRQQAQQEAGMILFTPNTY---RRLDDGTIVHTGSIEGGQLRDFFIA 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + +I + ++ + L D TTL D
Sbjct: 176 RDEPDGGHSLILAANGEMQGDEQQRHLLLHDGRRLAWNADHDPAHTTLFTYQHADLRLPG 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ A+ S ++ S + + +++ + L L ++ R
Sbjct: 236 ANTLAASS----DNRLRNLPTSELGTSPEHLSEWQSRSNPAVALFIYALALPLLARSQPR 291
Query: 301 SNQPRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + IV F F LY ++ ++ + + P+ + + L+++++ +
Sbjct: 292 QGRYQKIVPA--FIAFALYINLLDLITIAIRKQQIPPLPGSYW--LHGAVLALILICWQ 346
>gi|195940457|ref|ZP_03085839.1| permease YjgP/YjgQ family protein [Escherichia coli O157:H7 str.
EC4024]
Length = 366
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + Q ++ +FI + N ++
Sbjct: 121 GPTSSRHQDEVLAEAKANPGLAALAQGQFQQATDGNSVLFIESVDGNRFNDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ LA + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPTDTEQMDMRTLMNTDTDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + P+ + L + L++ +
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPMIWTWVVNGLYLLLAVGL 345
>gi|169634642|ref|YP_001708378.1| hypothetical protein ABSDF3307 [Acinetobacter baumannii SDF]
gi|169797503|ref|YP_001715296.1| hypothetical protein ABAYE3539 [Acinetobacter baumannii AYE]
gi|184156573|ref|YP_001844912.1| permease [Acinetobacter baumannii ACICU]
gi|213155683|ref|YP_002317728.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|239502071|ref|ZP_04661381.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB900]
gi|260556395|ref|ZP_05828614.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|301512956|ref|ZP_07238193.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB058]
gi|301594832|ref|ZP_07239840.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB059]
gi|169150430|emb|CAM88327.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|169153434|emb|CAP02576.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
gi|183208167|gb|ACC55565.1| predicted permease [Acinetobacter baumannii ACICU]
gi|193076099|gb|ABO10703.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|213054843|gb|ACJ39745.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|260410450|gb|EEX03749.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
Length = 366
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + +I K+A + ND + +V+ + I + T +
Sbjct: 181 EGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ +S S + ++ ++ + + P ++ +++ ++S R +
Sbjct: 239 KDVKFESGDVEALSTSKLFSKANDPVVRSELGWRLFGPFTIIIALMLSVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ G L A +L +++ + +K
Sbjct: 299 YYRLIP-SIFIFASLIVLMIAIKTRISKGELDIW--AYPVALLVYAIAAALFSRK 350
>gi|165976525|ref|YP_001652118.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165876626|gb|ABY69674.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 334
Score = 79.7 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 96/311 (30%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
L +P + Q ++P V ++ SE+ + RA GI L
Sbjct: 8 GKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTK 67
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
SI V + + +++ + K N +M
Sbjct: 68 VAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YV 123
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ + I E + D D++ K + +++ +
Sbjct: 124 LFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGT 183
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ D +Q + S +++++ F+ A+ + + + L
Sbjct: 184 ANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQS-NEAKAELQWRFALILA 242
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+A +S R + V + + + + + +KS G SG L +
Sbjct: 243 VPLMALLAVPMSSVNPRQGRFAK-VIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLV 301
Query: 344 VILTISLSILI 354
I L++++
Sbjct: 302 SIAFFILAMVM 312
>gi|188495933|ref|ZP_03003203.1| putative permease [Escherichia coli 53638]
gi|188491132|gb|EDU66235.1| putative permease [Escherichia coli 53638]
Length = 366
Score = 79.4 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 120/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + + I + + M L+ +S+ R +
Sbjct: 236 YQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|148261611|ref|YP_001235738.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|146403292|gb|ABQ31819.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
Length = 386
Score = 79.4 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 106/355 (29%), Gaps = 14/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L RY F+ L LG + LV++ + + S L VP
Sbjct: 19 PTRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQ-HGLSPVVFLHLTGLLVPS 77
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P +V + V+ L EL + RA G+S + P + ++L + +
Sbjct: 78 FVAVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNV 137
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S ++ + + I + I
Sbjct: 138 WLVPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDAR 197
Query: 182 ITIDK------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ ++I D ++ + + + + +N +L P +
Sbjct: 198 QKGEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVT 257
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
A+ + + + R + + I P +++ +IA
Sbjct: 258 RKLAPKTSEATMT----QLFHAGAAHVPPPVQRRWREEAWRRIASPFAVLSYAVIALLSV 313
Query: 296 LEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPVAAALIPVILT 347
L R + +F L + ++ ++G++ + A + L
Sbjct: 314 LRSPFRRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 368
>gi|50083532|ref|YP_045042.1| hypothetical protein ACIAD0254 [Acinetobacter sp. ADP1]
gi|49529508|emb|CAG67220.1| conserved hypothetical protein; putative permease [Acinetobacter
sp. ADP1]
Length = 366
Score = 79.4 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/350 (10%), Positives = 111/350 (31%), Gaps = 8/350 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGVLFSIIGYRMPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + GIS +L + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAQK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + +I K+A ++ N+ + +++ + I K + +
Sbjct: 181 EGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKY--SQAEFQRYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + ++ + S N +++ ++ + + P +V ++A ++ R +
Sbjct: 239 KSATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ ++ +I I + I
Sbjct: 299 YYRLIPAIFIFASLIVLLIAIRTRISRDE-----LGVWAYPAALAVYGIA 343
>gi|187929751|ref|YP_001900238.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|309781533|ref|ZP_07676269.1| membrane protein [Ralstonia sp. 5_7_47FAA]
gi|187726641|gb|ACD27806.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|308919946|gb|EFP65607.1| membrane protein [Ralstonia sp. 5_7_47FAA]
Length = 372
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/350 (10%), Positives = 103/350 (29%), Gaps = 10/350 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + + I + + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAAN-GEANPNDVLLLIGLATLGYLAILLC 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++V + SE+V+ GIS+ + P + S+ + L+
Sbjct: 66 ATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFIVLVALLALFGWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSITIDKK 187
+ +++ +++ ++ +FI G + +
Sbjct: 126 QQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDSGMKHARNLFVANAEQDKIG 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + + V L K Y+ +D D + +
Sbjct: 186 VAVAKTGEFKTMPNGDRFVVLDKGRRYEGTPGKLDYRIVEF------DKYGVKVANKPPQ 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + K + + + I +PL+ + LIA ++ R + +
Sbjct: 240 ADANLPTKSRSTKDLLADPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPM 299
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + ++ + +++ G + A P+ L + ++L +
Sbjct: 300 IF-AVLIYLTYSNLLNLSQAWVSQGKMNVFMA-WWPIHLAAFICAVLLFR 347
>gi|218702964|ref|YP_002410593.1| hypothetical protein ECIAI39_4734 [Escherichia coli IAI39]
gi|218372950|emb|CAR20831.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI39]
Length = 366
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-SDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|307129163|ref|YP_003881179.1| hypothetical protein Dda3937_01299 [Dickeya dadantii 3937]
gi|306526692|gb|ADM96622.1| conserved inner membrane protein [Dickeya dadantii 3937]
Length = 372
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL ++ S+L F + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKGVLLKAALLLSLLTASFAAANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + N + Q + +F+G ++
Sbjct: 121 SPWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKANGSDFERVFLAQLHPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + +Y + ++ +
Sbjct: 181 ENTRPSVVVADRGTVTARGDGSQVVTLSKGTRYEGTAMLRDFRITDFIDYQAIIGYQPVA 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + A +F++ + + L ++ M ++ +S+ R +
Sbjct: 241 LDPNNVDQM-----DMQTLWRSSDIAARAEFHWRLTLILSVLVMAIMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G L P+ + + +L+I +
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPLVWMWLTNLGYFALAIAL 345
>gi|218551558|ref|YP_002385350.1| hypothetical protein EFER_4343 [Escherichia fergusonii ATCC 35469]
gi|218359100|emb|CAQ91761.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia fergusonii ATCC 35469]
gi|324112114|gb|EGC06092.1| inner membrane protein yjgP [Escherichia fergusonii B253]
Length = 366
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 120/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVKAAMILALFTGIVAAINVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + RA + + + + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMTTLWNTDSDRARAELNWRLTLIFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I +
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIAL 345
>gi|149914658|ref|ZP_01903188.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
gi|149811451|gb|EDM71286.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
Length = 380
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/354 (12%), Positives = 108/354 (30%), Gaps = 10/354 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ A +P +I I+P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIG-DGQPAWVFLEFTALTLPGVIGVILP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S W+L+ P +V IL+ + L+ + + S
Sbjct: 60 MAAFAATVYVTNRLSTESELTVVQATGYSPWRLMRPVIVFGILIALMMSLLTHFLIPSSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ + ++++ + +
Sbjct: 120 SQLRLRQDEVSQNITAKLLTEGEFLHPAPGITFYIRDITPDGELHNVFMSDRRDSENTMT 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDGFQKFSEQ 243
+R K+ + + R N + +I + ++
Sbjct: 180 YTSNRAYLIQDPEGGTKLLMVDGLAQTVRRDGNRLFTTHFNDFSYDISALIASEATSLDK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEFSRS 301
+I + + + + PL+ + +I + + FSR
Sbjct: 240 VTFAHTLDIARDPRAVADRTLSTVSQVIFELNNRFSQPLLCIVAAVIGFASLLLGGFSRF 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I+ + + L P+ +P L ++ ++L
Sbjct: 300 GVWRQILLAFTLLIVIKLVESRVSGLVLAHSDLWPL--MYLPAALGALVTAVLL 351
>gi|157804140|ref|YP_001492689.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
gi|157785403|gb|ABV73904.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
Length = 333
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 68/332 (20%), Positives = 138/332 (41%), Gaps = 5/332 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ + ++ ++ + + S L ++P ++ Q+ I+ + NL + +E
Sbjct: 1 MIISNIFDLLQKFKNIY-VPFSFFWRLILYKIPYLLGQVSSLISFTAMLFFLSNLTKNNE 59
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN--GDKQ 145
L + + G+ IWQ+L + +++LGI ++NPI T G + L + D
Sbjct: 60 LTVILSSGVHIWQVLVSPCIVTLILGIVFTTILNPIGTIGLQKYELLEAKLTKKALSDGI 119
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
S S + I + I + T + +D N + R DA II N
Sbjct: 120 ISKSGLLFFESLNDANQIIQTQFINVAEKKLNNITVLFVDSNNSFLKRIDALYGIIENKM 179
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ L +V + N+ T+ + ++ + S + + K ++ S +
Sbjct: 180 LHLNRVKVFT-KEETKAYNTLTIQTNLSINSLVNKFSRPDMVSIWALPKLINELLNSGLP 238
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ +Y + P+M++A ++A+ R+N I+ G+FSGF+ Y++ I+
Sbjct: 239 AIN-YQIYYYKQLFKPIMMMATVILASCFISLKQRNNSQEKILILGLFSGFIAYSLSEIL 297
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQ 357
L +AA L+P +L +S I+L
Sbjct: 298 LKILAYNNLSLIAAILLPSMLIFFISNFIILH 329
>gi|188583150|ref|YP_001926595.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
gi|179346648|gb|ACB82060.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
Length = 389
Score = 79.4 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 109/356 (30%), Gaps = 6/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAK-GQTLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PFV ++ + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFVTLALAVSVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + D++ + + + + + N F ++
Sbjct: 123 PSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKREAG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKF 240
+ R V K + Q +++ +
Sbjct: 183 KAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDAET 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ RS ++ R + + + L +A+ IA + +
Sbjct: 243 VYKPRERSTLALL-FPDTGEGYYRLQKGRFRAELHDRLSAWLYPLALAFIAFAALGDPRT 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ Q R + G G + I S VAA + I+LS I+
Sbjct: 302 TRQGRGLAVAGAVLGVVALRIAGFAASSAAVRSPGAVAAVYAAPLGAIALSCFIIF 357
>gi|240140389|ref|YP_002964868.1| putative permease [Methylobacterium extorquens AM1]
gi|240010365|gb|ACS41591.1| putative permease [Methylobacterium extorquens AM1]
Length = 389
Score = 79.4 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 107/356 (30%), Gaps = 6/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAK-GQTLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PF + + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + D++ + + + + + N F ++
Sbjct: 123 PSSFQELRDVLTRVRGDFVANVLKEGQFTALDNGITFHFRERGADGSLQGLFIQDKREAG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKF 240
+ R V K + Q +++ +
Sbjct: 183 KAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDSET 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ RS ++ R + + + L +A+ IA + +
Sbjct: 243 VYKPRERSTMALL-FPDTGEGYYRLQKGRFRAELHDRLSAWLYPLALAFIAFAALGDPRT 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ Q R + G G + I S V A + I+LS L++
Sbjct: 302 TRQGRGLAVAGAVVGVIALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLIF 357
>gi|254473376|ref|ZP_05086773.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
gi|211957492|gb|EEA92695.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
Length = 415
Score = 79.4 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 40/322 (12%), Positives = 106/322 (32%), Gaps = 7/322 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + + L +V+ + + ++ + + A +P
Sbjct: 19 MKTIERYIIRRSFTAFIVTLAAMTGVVWSTQALRQLDLVTSK-GQTLLQFGYITALALPF 77
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + PF ++ I+V +++R SEL++ A G S W +L P + S+ + +
Sbjct: 78 LILIVAPFAMMLAFIIVLNSMSRDSELIVINASGASKWLVLRPIMTFSLCVTALMYFLSI 137
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ +G + + + + ++ I + D
Sbjct: 138 YLSPTGLAELRSELTRVRVDLVANIIKPGRFIPIEENLTFHIRNRSGDGVLEGLLLDDAR 197
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGF 237
A V L ++ + + S ++ +
Sbjct: 198 DPETSFTYTAETGRIIEAADKTLLVMLDGTIQRRPKGGQDMSIVSFESYGFDLSSMIPEA 257
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + + R ++++ + + H + +F+ + +PL +A LI +
Sbjct: 258 REPTFKASERPTFDLLSASPDDSYAA-KHWDKLIVEFHDRLSVPLYPIAFGLIIYAFLGS 316
Query: 298 FSRSNQ-PRIIVAYGIFSGFML 318
+ Q + + I +L
Sbjct: 317 PKTTRQDQGLAITTTIAVATLL 338
>gi|328675790|gb|AEB28465.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida 3523]
Length = 360
Score = 79.4 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/349 (10%), Positives = 101/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I A +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIAKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + I+ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDKKIIKAPDGKIIYISNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMDVNIYTKNSQN--SEYSHDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F+ I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKDNGTAFKAEFFGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + +G + +P I I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMTTGSMPVWIGFWLPHIFFIIFAV 346
>gi|114776266|ref|ZP_01451311.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
gi|114553096|gb|EAU55494.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
Length = 386
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/359 (11%), Positives = 109/359 (30%), Gaps = 12/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + +L L+ + ++ + ++ + + S L A +P +
Sbjct: 2 TLDRYMLRLWLGPFFGGLVFVLAVMLLARALKLLGTVSDTAEA-WSLIVDLLALTMPFFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L ++SE+ + R G+S ++ F + LL + +
Sbjct: 61 LQIVPMAFFLSLQNTITGLQQSSEMDVLRGSGLSYGRMFRVFFIVVPLLWLGLTYIAMVQ 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G+ +++ + + + + G + + +
Sbjct: 121 LPQGQLGFNNILAKIYAMKGAISFAPQRFTRGLDGITVYVDGEDSEGTYHGLILEDHRGG 180
Query: 184 IDKKNKIIHRKDADLAII---YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + + D+ ++ +P
Sbjct: 181 VSVIYTAKSARFDMGGEYLLLKLKDGVRLEGEGADQRMLAFDRYQVSIALPAGNRKILHS 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + E+ M S + +++P + + A +SL R
Sbjct: 241 NDHVTMMTVPELWHAMHNSQSGAAVAE------WNRRLLMPTTTLVLLFFALPLSLTQKR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
S + ++ GI M+Y + ++ G + + L + + + + E
Sbjct: 295 SGKAGSMIG-GIALLVMVYNLQLLLYQQVNQGGFPGW-SMWMGQALLLFTGMFLSKRAE 351
>gi|297250818|ref|ZP_06934295.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837906|gb|EFH21844.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 188
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 68/187 (36%), Gaps = 4/187 (2%)
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPI 232
DK + + + +LK + G ++ ++ + I +
Sbjct: 1 MGIKIWQRNDKNELTQAAEAESAVLNTDGSWQLKNIRRSILGEDKVEVSTAAEESWPISV 60
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K + + S E+ + ++N + ++ +V P+ M L+A
Sbjct: 61 KRNLMDVLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAF 119
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + +R + + GI G + + + G+ + P A ++P L L++
Sbjct: 120 AFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFAGQLYGVPPFLAGILPTALFALLAV 179
Query: 353 LILLQKE 359
++ ++E
Sbjct: 180 RLIRKQE 186
>gi|238755186|ref|ZP_04616532.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
gi|238706633|gb|EEP99004.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
Length = 364
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/356 (12%), Positives = 125/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRVLGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ L+ ++ S+L + +
Sbjct: 61 QLILPLSLFLGLLMTYGKLYTESEITVMHACGLGKRPLIIAALILSMLTSGLAAVNAIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + + +F+G+ ++ +
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALVEGQFQSSQDGNAVLFVGSVSGKEFQRVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ +A + L + Y+ R + T I Q
Sbjct: 181 DNQRPSVVVADKGHMAERPDGSQVVLLNQGTRYEGTALLRDFRITDFTDYQAVIGHQVAQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S + A +F++ + + + +V M ++ +S+
Sbjct: 241 QDNNIVEQMSMAALWHS----------SEQDARAEFHWRLTLIVSVVIMAMLVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G G L P+ + ++L++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSNGAKGKLDPMVWIWVVNGAYLALALVL 345
>gi|315223351|ref|ZP_07865210.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
gi|314946682|gb|EFS98671.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
Length = 495
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L L L +++ + +++ + +P
Sbjct: 1 MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ F E +A GIS+ +++ P ++ LL + T + N
Sbjct: 60 LIPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+ + L + I
Sbjct: 120 NVIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNI 153
Score = 56.6 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/236 (11%), Positives = 71/236 (30%), Gaps = 2/236 (0%)
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE-D 178
+ A E +++ N D + + + + ++ + ++ D
Sbjct: 223 NSYEAQQKEPFAKVYFKKYIINLDLSHLNNVNFNEKTDATTYRMMNVGQLNYAIDSLRTD 282
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
F D N + R +A + ++KK + + + +
Sbjct: 283 FKQNITDYGNNMFRRTGFSVAPSTSPSSEVKKQEKPKPAKEITSVRELFNKLNNTQKSMV 342
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ + ++ + + + + +AA + F
Sbjct: 343 LDMAINTNQAQLDNVEFRQSDLEYRYKLMNLHILNLSDKFALTVACFVLFFVAAPLGA-F 401
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + Y I MK+ ++ + P A IP ++ + L I +
Sbjct: 402 IRKGGIGMPLVIAMILFLAYYFIGMFMKNIAENNTINPALAPWIPALILLPLGIYL 457
>gi|153824249|ref|ZP_01976916.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
gi|126518229|gb|EAZ75454.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
Length = 155
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 1/144 (0%)
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ D + + S + + + ++ + R E
Sbjct: 12 DIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSLTGLSDYVHYLK-ASEQDSSRYELAL 70
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + P+ + M L+A S RS + G+ +GF Y L
Sbjct: 71 WRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGL 130
Query: 335 LPVAAALIPVILTISLSILILLQK 358
P+ AL P ++ +++++ +L +K
Sbjct: 131 PPLFGALAPSLVFLAIALGLLGRK 154
>gi|27379218|ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110]
gi|27352369|dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110]
Length = 389
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/363 (10%), Positives = 107/363 (29%), Gaps = 14/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + L+ ++++ + + +I + + VP
Sbjct: 1 MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITSLVVPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G S ++L PF + ++ + +
Sbjct: 60 LVLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G + + + + Q+ I+ D
Sbjct: 120 YLAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDKNLTIRIRERLPGGILAGIFIDDRR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYN----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ + + + + + L++ + + ++
Sbjct: 180 DPNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMSKFSGQG 239
Query: 238 QKFSEQFASRSFYEIIKKMS----FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + R +E+ + F + ++ + ++ + A
Sbjct: 240 RDVTLGIRERYLWELFSPSEDDPVYKQIPGQFRSALHDSLLAPIYPFAFAVLTFAFLGAP 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ SR+ + I + F L V V+ I + +
Sbjct: 300 RTTRQSRN----FSIGSSIVAVFGLRMAGFACSVMAVKSP-AAVLVQYAMVLGAIGVGMW 354
Query: 354 ILL 356
+++
Sbjct: 355 MIV 357
>gi|260551090|ref|ZP_05825294.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
gi|260405857|gb|EEW99345.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
Length = 366
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 121/355 (34%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + +I K+A + ND + +V+ + I + T + +
Sbjct: 181 EGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIYPGQPKYTQAEFQSYRLRLENDKD 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++ + S ++ ++ + + P ++ +++ ++S R +
Sbjct: 241 VKFESSD--VEALPTSKLLAKTNDPVIRSELGWRLFGPFTIIVALMMSVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ G L A +L +++ I +K
Sbjct: 299 YYRLIP-SIFIFASLIVLMIAIKTRISKGELDIW--AYPAALLVYAIAAAIFSRK 350
>gi|167470530|ref|ZP_02335234.1| putative permease [Yersinia pestis FV-1]
Length = 337
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/346 (14%), Positives = 116/346 (33%), Gaps = 17/346 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ ++ + + V L K Y+ R + I Q
Sbjct: 181 GNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S S E+ + A +F++ + + + +V M L+ +S+
Sbjct: 241 QSSNGADQMSMKELWRS----------QEPDARAEFHWRLTLIVSVVIMALLVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + + + + + + ++S G L P+
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSKAGKGQLDPLVWMWAVN 335
>gi|62260254|gb|AAX77892.1| unknown protein [synthetic construct]
Length = 395
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/349 (9%), Positives = 97/349 (27%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 28 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 87 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 147 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 206
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 207 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 264
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 265 YNHDRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 324
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 325 YAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAV 372
>gi|307946743|ref|ZP_07662078.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
gi|307770407|gb|EFO29633.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
Length = 395
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 117/366 (31%), Gaps = 10/366 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY FK + + +V+ + + +I + + +P
Sbjct: 1 MKTLERYIFKRAIGVFFMAMAAMAGVVWSTQALRQLDLVTSK-GQTIVQFIGITMLALPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + PF ++ ++V L+ SEL++ A G S + +L P ++ + + T +
Sbjct: 60 LLVIVAPFALMIALVLVLNALSGDSELIVIDATGGSRFLVLKPVLIFTAAVTALTATLSI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G + I + + + ++ + + +
Sbjct: 120 YVAPLGLGELREEITRVRADLVANIVKPGHFINMDAGLTFHIRNRSGNGTLDGLLLHDVR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGF 237
V ++ + + S ++ +
Sbjct: 180 DKDTAFTYQSDTGHIVEVADRTLLVMQNGTIQRKPKGAGEISIVRFQSYAFDLSNLIPEA 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS-- 295
+ + + RS ++ + + H + + + PL +A L+ +
Sbjct: 240 SEPVYKASERSTMNLLNPPPNDAYA-LQHPDKLLAELHERFSQPLYCLAFALVVFAFLGK 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + I + I + +L T + + SG + + I +++S+ +
Sbjct: 299 ARTTRQGR-GIAILGAITTCILLRTAGFGVTAIA-SGFTGLLLLLYVVPIAAMAVSVWSI 356
Query: 356 LQKEDG 361
+Q + G
Sbjct: 357 MQDDRG 362
>gi|16125408|ref|NP_419972.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
gi|221234151|ref|YP_002516587.1| hypothetical protein CCNA_01214 [Caulobacter crescentus NA1000]
gi|13422474|gb|AAK23140.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
gi|220963323|gb|ACL94679.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 406
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 6/343 (1%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
LG ++ +++ + + A LAA VP + +P V +V
Sbjct: 27 AACLGVTVIALLLERILRLLDVLSQSSARFGYVAQLAANLVPHYLGLALPVAFFVALFIV 86
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L+ SE+ A G S+ ++ PFV +LL +F+++V + ++
Sbjct: 87 IVKLSDGSEIDALLASGQSLERIAAPFVAVGVLLSVFSIIVFGYMQPYSRYAYRAVMHAA 146
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ G + ++ ++ ++ D +
Sbjct: 147 VNAGWNGRLAGGAFIDDKGSLLTADSADIAGQRLTRVFIRRLDAKGQEEIITAASADLKM 206
Query: 199 AIIYNDK-VKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
+ L+ + + T+L + + +
Sbjct: 207 DPDGKTITMDLRDGRRIAHDAYGTYRNLAFTSLTTQTPLSAAAVLLRDRGGDERELTMGE 266
Query: 256 MSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ KS + ++FY + L + L+A + L R N+ ++ G+
Sbjct: 267 LRREAKSPDPVVSKGTLLSEFYGRLARAAFLPFLPLLAFPLGLASKRGNRAPGLIMAGLL 326
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + K+G AA IP L +LS+ + +
Sbjct: 327 L-LAFQHSLLLGQGMAKAGKADAFAAIWIPFTLFAALSVWLFV 368
>gi|238798772|ref|ZP_04642243.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
gi|238717404|gb|EEQ09249.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
Length = 364
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 122/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALGTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ + + L K Y+ R + I Q
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + ++ + + A +F++ + + + +V M L+ +S
Sbjct: 241 QNSNVAEQMTMKQLWRS----------NEADARAEFHWRLTLIVSVVIMALLVVPLSAVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S +G L P+ +++++++
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLLWMWTVNGTYLAIAVIL 345
>gi|296122759|ref|YP_003630537.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
gi|296015099|gb|ADG68338.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
Length = 394
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/392 (12%), Positives = 116/392 (29%), Gaps = 41/392 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY LK G +L+ + + + + +P
Sbjct: 1 MMPLLQRYILVDLLKVFAVSAAGFTLLLVFAGVYVE----AKEHGLGPMQILQILPFIIP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ IP L+ VV+ L+ E++ ++A GI I +L P + ++L IFT+++
Sbjct: 57 TLLPFTIPTALLLTVCVVYGRLSGDQEIIAAKAAGIHIISVLWPAFLLGVVLSIFTLVIT 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-------ISNPQQDIFIGAKKILPEN 173
+ + K I ++ + I+
Sbjct: 117 DQMIPWSMKRIQRTIAMAVEDIFFDVLKAQNQLNLRDQGLSITVMDVRDRTLYMPTFRYM 176
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ T + + + +D + + + L + + N K
Sbjct: 177 RGNKPVTVQAKEARLRFDLDRDVVVMEFKDGYISLPDDANTRVRFRYDAREFPLPNRSQK 236
Query: 234 MDGFQKFSEQFASRS----------FYEIIKKMSFSNKSNIFHN---------------- 267
S + + + ++ + + S F
Sbjct: 237 AKSRDMTSREILAETRAMATGDATATRQLAIEAALILASGDFDRFGEKEFAVSRYQVDEE 296
Query: 268 ----YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ T+ + I + L+ A ++ +++ + + + Y +
Sbjct: 297 RNRSMKLTTELHNRISMAFGCFFFVLVGAPFAVYMAKNQFLTSFLFCFVPILVVYYPLSM 356
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ ++ K G + P A +P + I+
Sbjct: 357 MAQNLSKVGKVDPSWAVWLPNGALTLGFLYII 388
>gi|255264665|ref|ZP_05344007.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
gi|255107000|gb|EET49674.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
Length = 380
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/365 (14%), Positives = 125/365 (34%), Gaps = 15/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + +F L +++ +V + +Q+ S A +P +I+
Sbjct: 10 LDRYMLSQLMMLFGFFSLVLIMVYWVNRAVILFDQLI-ADGQSAGVFLEFTALSLPNVIR 68
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ V L+ SEL + +A G S +L P +V +L+ +++ + +
Sbjct: 69 LVLPLSAFAASVYVTNRLSTDSELTVMQATGHSAVRLARPVIVFGLLVTALMMVLTHVLV 128
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ D + +N + ++ NP I ++I + + F + T
Sbjct: 129 PTSLSRLNDREAEIAENVTARLLTEGTFL---NPASGITFYVREISASGELLDIFLTDTR 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K +I + + + +D +L + +T +I +D
Sbjct: 186 NPKRQITYTAEQSFLVRSDDGPQLVMINGLTQTLTLETQRLTTTTFADSTFDIGGLIDSG 245
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VS 295
+ + +++ + + + + L+ V L+ S +
Sbjct: 246 SRGRVNIREVATMDLLYPTQEIRDLTRRDDATLIHEGHGRFLQALLAVVAALVGFSTLLI 305
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR + IF + T+ ++ G P+ + + +S L
Sbjct: 306 GGFSRFG-ISKQIVIAIFLLIAIKTVESVAVG-AIRGQAHLWPIIYTPIAVGLVISAAQL 363
Query: 356 LQKED 360
+
Sbjct: 364 YWADH 368
>gi|134302362|ref|YP_001122331.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134050139|gb|ABO47210.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 351
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 4 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 62 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P N +
Sbjct: 122 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTNGKAYGIRKFMV 169
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 170 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPLPISV 229
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 230 AKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 289
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 290 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 349
Query: 360 D 360
+
Sbjct: 350 E 350
>gi|49475339|ref|YP_033380.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
gi|49238145|emb|CAF27353.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
Length = 396
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 111/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K L ++ A+ + + + + N ++ + + VP
Sbjct: 1 MRIIELYILKRILILFSAVMIAAIGISWTVQILARIN-FLTTSKQTLLTILQFSISLVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +IPF L+ +N+ SEL I A G + P ++ + + + + N
Sbjct: 60 VIFLVIPFALLIAITSTLSAMNQDSELAIISASGFPKSTVWRPILLIAFVASCASFFIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ ++ + + + I Q++ + +
Sbjct: 120 FVIPQARLNMRQMLATTHYDLINLFISEGSFQKLANNLYIEIGQRNPDGTLAHLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
K ++ K+ ++ N +++ + + +L I D
Sbjct: 180 DPKIDLFYYATKASVVSNKNGHFLVLNNGEIERINHQNDSVSIVQFSSYTFSLGEFIPND 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S+ + + + P++ + L AA +
Sbjct: 240 KTPTLYPKDRPLSYLRNPNPKDLYYQRKPLQYRAEFHRRLTEWLYPIVFSLIALAAAGDT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + I F++Y I KS + +IP+ ++I + ++L
Sbjct: 300 RSYRQVGNSAN--FSAIAFSFLVYWIGYFAAEKAKSDLAYVPLLYIIPIGVSILVFFMLL 357
>gi|256820290|ref|YP_003141569.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
gi|256581873|gb|ACU93008.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
Length = 495
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L L L +++ + +++ + +P
Sbjct: 1 MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ F E +A GIS+ +++ P ++ LL + T + N
Sbjct: 60 LIPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+ + L + I
Sbjct: 120 NVIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNI 153
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + + +AA + F R + + + Y I MK+ ++ +
Sbjct: 380 DKFALTVACFVLFFVAAPLGA-FIRKGGIGMPLVIAMILFLAYYFIGMFMKNIAENNTIN 438
Query: 336 PVAAALIPVILTISLSILI 354
P A IP ++ + L I +
Sbjct: 439 PALAPWIPALILLPLGIYL 457
>gi|238760356|ref|ZP_04621497.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
gi|238701416|gb|EEP93992.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
Length = 364
Score = 79.0 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 120/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V +I+ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALVLAIVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K D++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDDVLNDARANPSLAALAGGQFKSSTDGNAALFIGNVNGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + N + +Y + ++ + Q
Sbjct: 181 GNQRPSVVVADRGHMTERPNGSQVVVLNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + A +F++ + + + ++ M L+ +S R +
Sbjct: 241 QNNNVVEQM-----TMKQLWSSDEPEARAEFHWRLTLIVSVIIMALLVVPLSAVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S +G L P+ +++++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLIWMWAVNGTYLAIAVIL 345
>gi|228472915|ref|ZP_04057672.1| permease [Capnocytophaga gingivalis ATCC 33624]
gi|228275497|gb|EEK14274.1| permease [Capnocytophaga gingivalis ATCC 33624]
Length = 477
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 83/273 (30%), Gaps = 1/273 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY ++ + L M++ + +++ S A +P
Sbjct: 1 MKILDRYILSRFIFNFISSFLIIMVIFIFQTIWLYVDELVGR-GLSFLVVIKFIALMLPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ + EL +A G+S+ + ++ +LL I N
Sbjct: 60 LIPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKATRMLILFMVLLSIGVFFTFN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + L K+ + + + + + H
Sbjct: 120 NLQPWSNRKFVALRDSIKNKQPSLAISQGIFNNVQDFSIKVAKKTGENEQYLHDIVIHKV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+I K+ +L+ L+ +++ + + + + P F+
Sbjct: 180 GINGDTRTVIKAKNGELSGHKKGSDVLQLILKDGSYYEDVYNDKSDITFPFVKAKFETHV 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ I + + ++
Sbjct: 240 LNIDISALNADITYDENAERDYYKTMNISQLSH 272
Score = 52.0 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + + + I + + + +AA + R
Sbjct: 339 KDNIISLVNSLDNNKDNVEYQQKLINVYRLTLSDKIALAITCFVLFFVAAPLGA-IIRKG 397
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I Y + K+ +G + P A +P + L + +
Sbjct: 398 GIGMPLVVAIGLFLSYYFSGLLTKNMATNGNINPYIAPWVPTFFLLPLGVYL 449
>gi|261342656|ref|ZP_05970514.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
gi|288315304|gb|EFC54242.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
Length = 366
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 123/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L +I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVKILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + Q S+ +FI + N ++
Sbjct: 121 GPASSRHQDEVLAEAKANPGLAALAQGQFQQASDGNSVLFIESVDGNRFNDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L+ + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGQLSQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIVG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQTVALDPTDTEQMNMRTLIATDSDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G + P + L + L++ +
Sbjct: 296 V-LSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPAIWTWVVNGLYLLLAVGL 345
>gi|74316599|ref|YP_314339.1| hypothetical protein Tbd_0581 [Thiobacillus denitrificans ATCC
25259]
gi|74056094|gb|AAZ96534.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 359
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/350 (10%), Positives = 111/350 (31%), Gaps = 8/350 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + T L + + VI + + + + + +
Sbjct: 5 RALTREMGLATGAVLTVLIAIALVILFIRLLGDVA-RGELANEAVFAFLGFSLLYFLPVL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ ++ + R SE+VI G+S+ Q L P + ++ L + +L+ +
Sbjct: 64 MTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLNPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ D Q K + + + ++ ++ + L + F ID
Sbjct: 124 LQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYYVESLNPLTGI-VRNVFMQSRIDG 182
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ ++ ++ D + + L +Y P + + +
Sbjct: 183 QLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGGRD 242
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + + A + + + +PL + + ++A +S +R +
Sbjct: 243 TNIRQ-----KSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTR-ARRSY 296
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F+ ++++ +++ G P A ++ + + +
Sbjct: 297 GLVTALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGLFY 346
>gi|149907704|ref|ZP_01896451.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
gi|149809374|gb|EDM69303.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
Length = 361
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/347 (10%), Positives = 111/347 (31%), Gaps = 18/347 (5%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+K+ + L ++ + +++ + + +P + I+P +
Sbjct: 1 MKSQVAVLFILSLIFVSQQFVALLSKVMT-GALPANLVMEMLLYTMPALGTLILPVSLFI 59
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ L SE+VI A G + ++L ++ S + A + E+ +
Sbjct: 60 GILFAHGRLYAESEMVILTACGYTPSRILMSSLLLSSVTIGLVAFNAFIYAPTAEEGRVQ 119
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
L++ + + + +++ + S + + + I
Sbjct: 120 LLENVDADVGLATLKQGRFESLDGGLAVVYVESYDSDKSLRKIFIAKSPSQEGERPSIVL 179
Query: 194 KDADLAIIYND---KVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQFASR 247
D ++ +KL + + Y+ D + + + I+ + + +
Sbjct: 180 ADKGNVESDDNGSQWLKLSQGLRYEGELSQRDFRIVDFSEYRVFIQEQDVSERGRKTKAL 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
E+ + + + + + I + + +TL+ +++ R +
Sbjct: 240 PTSELWNS----------NEFEHKVELQWRIAQVVAIPLLTLLVVPLAMVNPRQGRYAK- 288
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + +++ +S L V I + + L+I
Sbjct: 289 LFPALLMFLTYFMLLSAARSAILDEKLPLVFGFWIVHLGVLILAIWF 335
>gi|33519520|ref|NP_878352.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
gi|33517183|emb|CAD83565.1| putative inner membrane protein; predicted permease [Candidatus
Blochmannia floridanus]
Length = 360
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 115/359 (32%), Gaps = 9/359 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY KY L L + L +I L + + YS+ +
Sbjct: 3 MSNILERYIKKYVLLNIFMIFLIFISLSSIIRLVDELRNF-QKQTYSVFEIFFCIFLNII 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + TL+ ++ L +EL+I + G+S Q+ + SI + + V+
Sbjct: 62 KDFELFLSLSTLLGGVLGLGILELRNELIIMKVFGLSNLQINLSVIKTSIFIVLLYVIYN 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + N + +
Sbjct: 122 IWLLPYSQYLLCSHQHYKQYNVYLFPEKNKN---LWLMDSGNSFIHVNYMLTTQDLLGIN 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDG 236
++ ++ + A ++ + + E ++ N S N +
Sbjct: 179 LYHFTEERQLKRIIYIEKATYIDNSWSVSNINELEFVDKMQFLNRKILSYEWNTTLTPAI 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S ++I + + + Y + F+ I P+ V M IA S
Sbjct: 239 LSMITVNPHFLSISKLICCIKYFDVLGQNSKY-YQLIFWDKIFSPIFGVMMLTIALLYSY 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + +G GF+ Y + I + + P+ ++I ++L + ++ + L
Sbjct: 298 GPFYKKKISFRLFFGGIIGFVFYVLHQIFEILSIVYNITPIVGSIILIMLFLMINTIFL 356
>gi|56708377|ref|YP_170273.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256770|ref|YP_514132.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|110670847|ref|YP_667404.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|115315161|ref|YP_763884.1| hypothetical protein FTH_1435 [Francisella tularensis subsp.
holarctica OSU18]
gi|167010911|ref|ZP_02275842.1| hypothetical protein Ftulh_09398 [Francisella tularensis subsp.
holarctica FSC200]
gi|187931970|ref|YP_001891955.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224457507|ref|ZP_03665980.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371000|ref|ZP_04987003.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875200|ref|ZP_05247910.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604869|emb|CAG45953.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144601|emb|CAJ79920.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|110321180|emb|CAL09336.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|115130060|gb|ABI83247.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|151569241|gb|EDN34895.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|187712879|gb|ACD31176.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254841199|gb|EET19635.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159996|gb|ADA79387.1| hypothetical protein NE061598_09765 [Francisella tularensis subsp.
tularensis NE061598]
Length = 353
Score = 78.6 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P N +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTNGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPLPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|254374089|ref|ZP_04989571.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
gi|151571809|gb|EDN37463.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
Length = 353
Score = 78.6 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 122/361 (33%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTKGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|254372627|ref|ZP_04988116.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570354|gb|EDN36008.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
Length = 353
Score = 78.6 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 122/361 (33%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNISNIEPTQGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|296114026|ref|YP_003627964.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|295921720|gb|ADG62071.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis RH4]
Length = 396
Score = 78.6 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 16 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 75 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 135 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTA 194
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 195 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 254
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 255 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 314
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V + + +I++ + K G L PV L +++ + +
Sbjct: 315 ATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVI-YLAALLMMMVV 372
Query: 351 SILILLQK 358
++ + +
Sbjct: 373 AMYLNYHQ 380
>gi|326405101|ref|YP_004285183.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
gi|325051963|dbj|BAJ82301.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
Length = 374
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 106/355 (29%), Gaps = 14/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L RY F+ L LG + LV++ + + S L VP
Sbjct: 7 PTRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQ-HGLSPVVFLHLTGLLVPS 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P +V + V+ L EL + RA G+S + P + ++L + +
Sbjct: 66 FVAVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNV 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S ++ + + I + I
Sbjct: 126 WLVPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDAR 185
Query: 182 ITIDK------KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ ++I D ++ + + + + +N +L P +
Sbjct: 186 QKGEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVT 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
A+ + + + R + + I P +++ +IA
Sbjct: 246 RKLAPKTSEATMT----QLFHAGAAHVPPPVQRRWREEAWRRIASPFAVLSYAVIALLSV 301
Query: 296 LEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPVAAALIPVILT 347
L R + +F L + ++ ++G++ + A + L
Sbjct: 302 LRSPFRRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 356
>gi|291060242|gb|ADD72977.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 372
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/353 (12%), Positives = 98/353 (27%), Gaps = 3/353 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y +L L+ A +++ ID+ Q Y S + +P
Sbjct: 1 MKILQVYMLDMFLPIFFLVLVCASMILDAIDILVNLTQFIS-NGYRFSSLVKIWYVSIPH 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L L +E + G+S + ++ P+ L I N
Sbjct: 60 YVLLCCPLSVLFAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++I + + + I +
Sbjct: 120 SVVVVSQSKKDEIIARTVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K+I A +K ++ + + + + ++ F
Sbjct: 180 NSNGTIQKLIEAHTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQD 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S +I + + ++ H +FY PL + M ++ ++ F +
Sbjct: 240 FLTKGMSIQKIKETLHTLKYASKPH-RELSIRFYKKFYFPLTMCIMLCLSF-LTGSFLKK 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + Y + + P PV+ + L +
Sbjct: 298 RSLIMYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYV 350
>gi|226227978|ref|YP_002762084.1| hypothetical protein GAU_2572 [Gemmatimonas aurantiaca T-27]
gi|226091169|dbj|BAH39614.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 578
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 49/142 (34%), Gaps = 1/142 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + ++ ++ L L+ + + + S +P
Sbjct: 1 MKLLTRYVIREHIGPLVFALSALTSLLMLQYVARQLANLAGK-GLPWSAIGQFFVLSLPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P LV + F + E+ +A G+ + ++ P + ++LL +F V +
Sbjct: 60 TVAMTLPMAVLVATLYAFGRMAAEHEITAFKASGVRVRTMMLPVLFCALLLSLFMVWFND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGD 143
+ + L +
Sbjct: 120 QVLPAANHRLSMLQRDIARTKP 141
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + + L ++L F R + + I + Y + ++ G L
Sbjct: 457 HKKFALSFACLVFVLFGPPIALRFPR-GGVGVTIGVSIIVFGLYYVCLMGGEALADKGRL 515
Query: 335 LPVAAALIPVILTISLSILILLQKE 359
A I ++ +++++L + E
Sbjct: 516 PAYVAMWIANVIFTLVALVMLWRVE 540
>gi|283834896|ref|ZP_06354637.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
gi|291069156|gb|EFE07265.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
Length = 366
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ K N + Q +N +FI + N ++
Sbjct: 121 GPWSSRHQDEVLADAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFNDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQMRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWKTDNDRARAELTWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G L PV +L ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWAVNLLYLALAIVL 345
>gi|118497254|ref|YP_898304.1| membrane protein of unknown function [Francisella tularensis subsp.
novicida U112]
gi|118423160|gb|ABK89550.1| conserved membrane protein of unknown function [Francisella
novicida U112]
Length = 353
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 122/361 (33%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTKGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|291279033|ref|YP_003495868.1| hypothetical protein DEFDS_0631 [Deferribacter desulfuricans SSM1]
gi|290753735|dbj|BAI80112.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 344
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 113/356 (31%), Gaps = 13/356 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +Y K + L L I + +ID +++ N A L +P
Sbjct: 1 MRITEKYVLKELVPVFLVGNL-FFIFILLIDKIVDLSELILAKNVPFFFVAELIIAYIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP TL+ ++V+ L+ SELV +++G + + P ++ + + +L+
Sbjct: 60 FLVITIPTSTLLSALIVYGRLSDDSELVAMKSLGADKYNIFKPSILLGFISLVLALLMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I+ + Q + K + +N
Sbjct: 120 YLMPKGNDFAIERLMQISKYVSINDFKENELYTEIP---GFVLYTDKRVDKNKFLGLIII 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + + + L V K + +
Sbjct: 177 NKKDHIVIQAKKGEIVNTTEGSLVFNLDNGVLIDTKGEIPSKLEFKSFVVNVP-IITEKK 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I ++ NKSN + + +P + M + A V F R
Sbjct: 236 FDVRNERLMSIRNLINHLNKSN-----IIKFELSKRFALPFASIIMAIFGAVVGSFFHR- 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ I + T++ + ++ +L P AA + I+ I L + +L +
Sbjct: 290 GGKAFGLSVSIIIVLIYNTLLLLSQNL--INMLNPYLAAWVANIIFIILLVYLLRR 343
>gi|315138812|dbj|BAJ45971.1| conserved inner membrane protein [Escherichia coli DH1]
Length = 366
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWCITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|34558361|ref|NP_908176.1| permease [Wolinella succinogenes DSM 1740]
gi|34484080|emb|CAE11076.1| conserved hypothetical protein-PREDICTED PEMEASE [Wolinella
succinogenes]
Length = 355
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 116/353 (32%), Gaps = 5/353 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+R+ YLK LL IDL + E S + + +
Sbjct: 5 FRFLGALYLKYFFILLLALETFFVGIDLL----KFAEELPPSANLVVLFVVYDALYALNF 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P ++ I++F L RT+EL +IG S Q+ P + ++L +++
Sbjct: 61 ILPIALVLAQILLFVVLLRTNELTALLSIGYSKRQITTPLLGIALLFTFGFIVLNATPFA 120
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ ++ Q K++ + + + K + + E
Sbjct: 121 YAKERVDTILDQGYVGNFKRELFVKYHDSYIYFDKIYPLLQKAEGVKVYRLEGDRVAQWI 180
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + + ++ + + + E+
Sbjct: 181 EAKEARFVDNHWRLNEAMVMTIPSELTLGGSPLEVEKVDFMEVLEGFRPRILDSIYERHG 240
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ S + I+ MS + + ++ + Y L++ P ++ A R
Sbjct: 241 AVSIIDAIESMSLLLEQQV-NSQKIRGILYSLVLFPFFAPLCMVLVAYYMPITMRYGNLA 299
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
IIV I + + + + SG + P + LIP+IL +L++ +
Sbjct: 300 IIVFAAILGVLLFWGLFFALSRLSMSGFIHPEVSLLIPMILWTALALFFWRRL 352
>gi|148255228|ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]
gi|146407401|gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1]
Length = 389
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 112/361 (31%), Gaps = 12/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + L+ ++++ + + +I + +P
Sbjct: 1 MGSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITGLVIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S +L PF + ++ I +
Sbjct: 60 LLGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G + + + + Q+ + I D
Sbjct: 120 FFAPDGLRRIKQWDAEITADVLANILQPGRFAQLDQNLTIRIRERQPGGELQGILIDDRR 179
Query: 182 ITIDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ I K+ D + + + L++ + + ++ +
Sbjct: 180 DPKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMSKFSNQG 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--S 295
+ + R +E++ + + + + + P+ A + + +
Sbjct: 240 RDVTLGIRERYLWELMAPAED-DPIYKQIPGQFRQELHDRFLAPIYPFAFAALTFAFLGA 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R ++ I + F + PVAA + ++L L + I
Sbjct: 299 PRTTRQSRN-FSFGSAILAVFGVRMAGFACSVMTVK---TPVAALVQYLMLFGVLGLSIW 354
Query: 356 L 356
+
Sbjct: 355 I 355
>gi|169656684|ref|YP_001428997.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|290954454|ref|ZP_06559075.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica URFT1]
gi|295312116|ref|ZP_06802927.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica URFT1]
gi|164551752|gb|ABU62041.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 353
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P N +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTNGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHINIVTNMTNAVWSNPLPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|254369661|ref|ZP_04985671.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122620|gb|EDO66749.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 353
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 19/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P N +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTNGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPLPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS+ + + G F GF + I I L P+ A P ++ + L I + ++ +
Sbjct: 292 RSSTLILKLLIGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351
Query: 360 D 360
+
Sbjct: 352 E 352
>gi|238761816|ref|ZP_04622790.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
gi|238699930|gb|EEP92673.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
Length = 364
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALITSALASVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + + +Y + ++ + Q
Sbjct: 181 GNQRPSVVVADSGHMIERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + + A +F++ + + + ++ M L+ +S+ R +
Sbjct: 241 QNNNVAEQM-----TMKQLWDSNKPDARAEFHWRLTLIVSVIIMALLVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G L P+ + +++++++
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNASGGKLDPLIWMWAVNGVYLAVAVIL 345
>gi|240850232|ref|YP_002971625.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
gi|240267355|gb|ACS50943.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
Length = 396
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 114/360 (31%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K L ++ A+ + + + + N ++ + + VP
Sbjct: 1 MRIIEFYILKRVLVLFSSVMIAAVGVSWTVQILARIN-FLTTSKQTLLTVLQFSLSLVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IPF ++ + +++ SEL + A G + P ++ +I+ + + N
Sbjct: 60 VVFLVIPFALVIAITTILSAMHQDSELAVINASGFPKSTVWKPILLLAIVASCISFSIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+ ++ + + + + I +++ +++ +
Sbjct: 120 FVVPQARLHMRQMLASAHFDLINLFINEGSFQKLANNLYIEIGERNPNGTLERLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I+ K+ ++ N +++ + + +L I D
Sbjct: 180 DPKTDLFYYATDASIVSNKNGSFLVLNNGEIERVNHQNNSVSIVQFSSYTFSLGEFIPSD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S S+ + + + + P++ + L AA
Sbjct: 240 KAPTLYPKDRSLSYLQNPDPKDPYYQRKPLQYKAEFHRRLTQWLYPIVFSLIALAAAGDV 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ I F++Y I K+ + ++P+ + + ++L
Sbjct: 300 CSHRQARHSAN--FSAIALSFLVYWIGYFFAEKAKNDLAYIPLLYIMPIGTSAFVFFMLL 357
>gi|153822424|ref|ZP_01975091.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|126520067|gb|EAZ77290.1| conserved hypothetical protein [Vibrio cholerae B33]
Length = 164
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 1/162 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
A +K+ D+ G W + +N I
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFI 161
>gi|34763637|ref|ZP_00144566.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886690|gb|EAA23834.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 191
Score = 78.2 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 4/164 (2%)
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
DK V Y + L + + +E + E+ K
Sbjct: 28 FDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSNFIRASAEDPRMLTIKELKKT 87
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+ + P + I S S ++ R + + + + +G
Sbjct: 88 IKEQKNIGE-DTRIYLAELAKRYSFPFASFIVAFIGLSASSKYVRGGRTTMNLVICVVAG 146
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ Y + ++ +GI+ P A+ IP IL + + I + + E
Sbjct: 147 YGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFMNRAE 190
>gi|157165310|ref|YP_001466458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
13826]
gi|112801662|gb|EAT99006.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
Length = 354
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 116/354 (32%), Gaps = 4/354 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY Y+K+ L L + IDL + N +
Sbjct: 1 MKLYARYVGWVYIKSFLIVFLALELFYVGIDLLTNLKDLPPSANLQ----LLYVGLTALS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++P + I++ N+ R++EL+ A+GIS +L+ P + + + IF V +
Sbjct: 57 AISYVLPLSLIFALIILHVNMVRSNELISFYALGISKNKLILPPFLIAFFVTIFYVGLNF 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + S + + ++ +
Sbjct: 117 TPFAYAHDYQKSIAKNTAFSKSTNDSFLKFEGKFIYIKELNSAKQRANDVRIFDINGTDL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ + + + + N + + + G + + K + +
Sbjct: 177 LSTTFADHAKFKDNEWVLEDVNQTFLPQNLELGENGFSKVKSENLDALRGFKPKSIESAA 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S+ + K+ A T FY L + P + LI R
Sbjct: 237 SVENSKFNIPDAINFIKTFKNEGIGLDSARTAFYNLAITPFFAPFLLLIFYYHLPVTGRF 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + +++ ++ I+ F ++ ++LP ++PVIL + +I ++
Sbjct: 297 FNLALSTFIFVVITLVVWGLLFILTKFAQTSVILPEIGMVVPVILLFAYAIYLI 350
>gi|91214820|ref|ZP_01251793.1| putative permease [Psychroflexus torquis ATCC 700755]
gi|91187247|gb|EAS73617.1| putative permease [Psychroflexus torquis ATCC 700755]
Length = 516
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 1/162 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY ++KT L M++ + + + + + + +P
Sbjct: 1 MKILDRYILVSFVKTFLSVFTILMLIFILQSVWRFIEEFAGK-DIDLEIISRFLLFLLPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++P L+ +I+ F + E ++ GIS+ + + +V +LLG T N
Sbjct: 60 LIPMVLPLTILLTSIMTFGSFAEQYEFAAMKSAGISLQRAMRSLIVFILLLGAVTFYFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ E +++ + + + N +
Sbjct: 120 TVIPYAEGKVLNMRKNIAQVKPSLAIIEGAFNDMGNINIKVN 161
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 1/142 (0%)
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+S P + + S I K + E +
Sbjct: 342 NVYKDFSIDSLFWEYPYRQRSQIFNVATNSVNSITPQIISKKNQFKRKEILLNKIEMAMH 401
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+P + + + A + R + + + + I + + G L
Sbjct: 402 SKYALPFACIILFFVGAPLGA-IIRKGGLGLPMVIAVIVFLTYHFIGLFAGNSAEGGSLS 460
Query: 336 PVAAALIPVILTISLSILILLQ 357
P + + I+ LSI + +
Sbjct: 461 PFLGSWLSTIILFPLSIYLTYR 482
>gi|317494176|ref|ZP_07952592.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917949|gb|EFV39292.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 366
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/351 (11%), Positives = 118/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + L VP +
Sbjct: 2 IIIRYLVRETFKSQIAILFILLLIFFCQKMVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+V+ A G+ L+ ++ + + G F ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEIVVMHACGLGKGVLIKTAMILAFITGAFALVNAFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + +F+G K +++
Sbjct: 121 SPWSSFHSDEVMAEAKANPGLASMVEGQFQPSKDGNYVLFVGDVKGKKFENVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + + ++ +Y + ++ + +
Sbjct: 181 GTQRPSVVVADTGHMEGRPDGSQQVVLDTGTRYEGTALLRDFRITDFVNYEAVIGHQAVV 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + +F++ I + + M L+ +S+ R +
Sbjct: 241 LNPSNADQ-----APMQALWDSNEKDFRAEFHWRITLVFSVFVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G + P + + L+I +
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNAAKGKIDPFIWVWVVNGFYLLLAIAL 345
>gi|330874292|gb|EGH08441.1| hypothetical protein Pgy4_05802 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 328
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/315 (13%), Positives = 102/315 (32%), Gaps = 16/315 (5%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
++ R+P +Q I+P + ++ + L SE+ + A G+S +LL + +
Sbjct: 1 MFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAT 60
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI------ 164
L+G+ + +A G LI + + + + + + +
Sbjct: 61 LVGLLVAWLSFSLAPQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSED 120
Query: 165 --GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
+ S + + ++ + + L+ Y D
Sbjct: 121 RSQLAGVFISEKRMSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAAD 180
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ M + SE+ R + + R+ + + I +PL
Sbjct: 181 YRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGN-------PAPRSVAELQWRISLPL 233
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ +TL+A +S R + + + I I+ ++S + G L
Sbjct: 234 SVFIVTLMAIPLSRVNPRQGRY-LKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW 292
Query: 343 PVILTISLSILILLQ 357
+ +S+ +L+
Sbjct: 293 VHGIYLSIGLLLFYW 307
>gi|326796829|ref|YP_004314649.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
gi|326547593|gb|ADZ92813.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
Length = 369
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/352 (13%), Positives = 107/352 (30%), Gaps = 5/352 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+RY K L +T L ++++ + E S ++ VP IQ
Sbjct: 3 LFRYLAKEVLVSTAGVTLILLLIILSGRFVNYLGRAAE-GKMSFEFLFIILGFHVPSFIQ 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P + ++ + L +E+ I + GIS +L + + LL + + V ++
Sbjct: 62 MILPLAFFLSLLLAYGRLYIENEMSILFSSGISKVKLTVYTLGIAGLLTLTSAFVNFWLS 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E Q+ + + + N+I+
Sbjct: 122 PYSEYQAELARQEQDQLTAFDFIQPGRFQGRGQQTTYVASFTPEEGWMNNIFLSDFVRKN 181
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + I + L ++ R + I + ++
Sbjct: 182 GRDIPVQTIAKNAEQIRLETEGGLNYLIFKDGVRYEGTPGAANYRIMEFDTYAIRLEDKA 241
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S N + + ++ I + +M+ + +I S+S R +
Sbjct: 242 PGTIDKAYAVPTTALFNS---DNPKYIAELHWRIALVIMIPILAIIGVSLSQVNPRQGR- 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ I + ++ K+ + G + ++ L+ L
Sbjct: 298 FFKMLPAILLMIVYLGLLIWGKTALEKGKIPLHLGLWWAHGTFAIIAYLLFL 349
>gi|297620918|ref|YP_003709055.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376219|gb|ADI38049.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 371
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/371 (15%), Positives = 129/371 (34%), Gaps = 14/371 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+WRY Y K + + ++ L+EI + P + + A ++P
Sbjct: 1 MFPIIWRYLLSQYFKVMGLCVAAFIAVLLTSRLDEIAHFAVLSP--TPALAAQFILLQIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ +IP L+ +I++ L+++ EL R+ GIS+ L P + S+L+ +I
Sbjct: 59 YILPIVIPVSCLISSILLVQRLSKSHELTAFRSCGISLKDFLTPILFSSVLVAFINFYII 118
Query: 121 NPIATSGEKIGIDLIQQWKD-------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ ++T I ++ + + + + IL
Sbjct: 119 SELSTYSHYQTIIWKEELRSTNPLHLLRNKHLMGAKGGFFNSLGDSKLGKNAGEVILALP 178
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---NI 230
+ + ++ + K+ + + + + + + TL
Sbjct: 179 NKNQSRITLFLAKELISDDNFFEGTDVTMITAMPSGDPDSFDHLLVENAAKTKTLTDDFS 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ K + + +N ++ ++ + + TL+
Sbjct: 239 QLMKQKQWKIGNDYLTMEQLLAKLYEEQANGFSVNDINCCYSEIIRRFSLGFSAFSFTLM 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + SR++ + + + T + I KS G++ L IP +L ISL
Sbjct: 299 GLAFGISISRTHSL-KKILWVVLLAGGYITTLFIGKSAGQNLSLSLALYT-IPHLLIISL 356
Query: 351 SILILLQKEDG 361
S +L + G
Sbjct: 357 SAAVLYRVNHG 367
>gi|149927923|ref|ZP_01916173.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
gi|149823362|gb|EDM82595.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
Length = 379
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/351 (9%), Positives = 98/351 (27%), Gaps = 10/351 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K + +T + ++ L Q + L + +
Sbjct: 7 FRKDFAQTAGATFVALFTIIVTTVLVRTLGQAAG-GKVDNAEVFTLILLGGLQYLPAALV 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + V + E+ A G+S++ L+ P + ++ L + ++ + +
Sbjct: 66 ITVFIAVMGVVSRAFKEQEMTAWFASGVSLFSLVRPVLRFAVPLTVLALVCSVWLTPWAK 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKK 187
++ D K + + + F ++ + S +
Sbjct: 126 AELDAAKDRFAKRSDVSKVSAGQFRESGEGNRVFFVERQSEVTKQVENVFVVDSKGDTRT 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
R ++ + L ST +
Sbjct: 186 VVSAARGSVEVDASGQPYLVLSGGRRATLDGTGERFTSTEFETYGLAIDNTLGAAPSFQL 245
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ ++ + + + + +P+ + + L+A ++ R
Sbjct: 246 QHRRVDLLIADFSPAAQGELL-------WRVSLPMSALVLGLLAIPLAFVNPRGGNSLNQ 298
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + I+++ +S L A ++P + + L+++++
Sbjct: 299 LF-ALLIYLTYSNIVSVTQSMVTKETLDFWVALVLPHASVLLMFYLLMVKR 348
>gi|146340304|ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS278]
gi|146193110|emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS278]
Length = 389
Score = 77.8 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 118/361 (32%), Gaps = 12/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + L+ ++++ + + +I + +P
Sbjct: 1 MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITGLVIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S +L PF + ++ + L+ +
Sbjct: 60 LLGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLAS 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA G + + + + Q+ + +I D
Sbjct: 120 YIAPDGLRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIGERQPGGELKNILIDDRR 179
Query: 182 ITIDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ I K+AD + + + L++ + + ++ +
Sbjct: 180 DPKERITIIAEKGTVVKNADGSFLVLEDGNLERFEIGKREPAMVAFARYAFDMSKFSNQG 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--S 295
+ + R +E++ + + + + + P+ A + + +
Sbjct: 240 RDVTLGIRERYVWELMAPAED-DPIYKQIPGQFRQELHDRFLAPIYPFAFAALTFAFLGA 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R ++ I + F + P+AA + V+L L++ I
Sbjct: 299 PRTTRQSRN-FSFGSAILAVFGVRMAGFACSVMTVK---TPIAALIQYVMLFGVLALSIW 354
Query: 356 L 356
+
Sbjct: 355 I 355
>gi|260062764|ref|YP_003195844.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
HTCC2501]
gi|88784332|gb|EAR15502.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
HTCC2501]
Length = 559
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 75/276 (27%), Gaps = 6/276 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L + M +F+ + I +P
Sbjct: 1 MRILDQYILKRFLTNFFSSFVILMF-IFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++++P L+ +I+ F E +A GIS+ + + P +V LLG T N
Sbjct: 60 LTEKVLPLTVLLSSILTFGAFAENYEFAAMKASGISLQRSMLPLIVFVSLLGFVTFYFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ +L + + + +K + E+
Sbjct: 120 TVIPISEQKIYNLRRNIATLKPAAVITEGVFSDFEGKNIKVD---RKYGENDRFLENVVI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ A + + + +++ T + + +
Sbjct: 177 HEKSNLQRNTTVIKAATGELISGEG--SDIIQLVLRDGHYYHEMTQASGSNQRTHPFAKA 234
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ + M R +
Sbjct: 235 DFDTYIMNIALPDNMEDLEADRNVETDRMKNVSRLR 270
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ R + + L + + + A + R + + I Y
Sbjct: 434 SYKRYNRHILSLHNKFALALSCIILFFVGAPLGA-IIRKGGLGLPMVVAIVLFLAYYFFG 492
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ K G + PV A +P ++ + L + + +
Sbjct: 493 VFSNNYAKEGNIPPVLGAWLPTMIMLPLGVWLTRR 527
>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 13/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +Y ++LKT L ++L + D + + SI P
Sbjct: 1 MKKIHKYITIFFLKTFFISLAFFVLLFVLSDFFSNLSDIVG-NGVSIKYIISYYVYYTPF 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II +PFI + ++V L+ +E+++ R+ G+SI+++ P + SI++ +
Sbjct: 60 IIYFSLPFIFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASKE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G + + + N + + + +
Sbjct: 120 LIVNYGLEKASFVKHYYFKNKQFKLGWTKVGNMFIKVNGLNVTNNMAYNVTAYRVDKDFN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I + + + K+ + F
Sbjct: 180 RVEAIITAKRVKFKPKEIIFIDGC-----------SFNMPNFSQGRCFKDFKIKTNKSFY 228
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE-FSR 300
F+S F E K + + + V P + +TLI+ L+ R
Sbjct: 229 SLFSSSKFKEPSIKSLVFSYKHSLDKDYYLSLIIHRFVYPFSCIILTLISFVFVLKTNPR 288
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
V + + ++ S G+ ++ P + +I ++ +S+S+ LL+
Sbjct: 289 RGGFVKNVFSSSLVFLVYIGSLELISSMGRYSMVDPNISIVIFILFWLSVSVYNLLKL 346
>gi|317051998|ref|YP_004113114.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
gi|316947082|gb|ADU66558.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
Length = 342
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/357 (10%), Positives = 110/357 (30%), Gaps = 21/357 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + L +++ L + + E S+ A L +P
Sbjct: 1 MLSTWQRYLLRECFFYFFAALASLSLIMASNSLIRMGSSTLEK-GISLMSLAQLTLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ + + LNR++E+VI + GIS + ++ + S ++ +
Sbjct: 60 STAFITIPVSALIAAMALSSALNRSNEMVILYSAGISPFGIMKVILFASTVITGIAIANS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A K + +N + + ++ + + ++ + + +
Sbjct: 120 FVLAPLASKQIQHVYADMAENVSYRVILPGVFNKLGDTTLFYYHLGREGFHDVMVAQGDL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + + L + V ++ + + + +D +
Sbjct: 180 VLSARSGSLVQGDESMVLLLRDGTIVDARQGQSFT------RFAVHEIPLETAVDSLRLS 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ ++ + + + + + ++ + R
Sbjct: 234 YSMMSVEQLRQLKGSKAILEI-------------HKRYALSVSTLLFGVLGFMLGARGGR 280
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S + V + Y I I +G++ P I + ++++ + +
Sbjct: 281 SGK-GASVLTSLMVVLAFYLIRAIGVHSMDAGLIAPQQVEWIGPGVMAAVTVFVYFR 336
>gi|88810918|ref|ZP_01126174.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88791457|gb|EAR22568.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 358
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/356 (9%), Positives = 103/356 (28%), Gaps = 8/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + + ++ + + A++ A R +
Sbjct: 1 MLLIERYLIAEVRRPLVAVVGVLSLIFASYSVARYLADALSET-LGMQAVALMVALRTLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP ++ L E+ + A+GIS ++ ++ ++ + + +
Sbjct: 60 ALEVLIPVALYASVVIGLGRLYNDQEMTVLGAVGISSARVYWAILLLALPVALAVGALSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + S + I
Sbjct: 120 FGRPWAYQQAYQAEAHAHVEIPLDRLRAGHFYVESQTGRMILAQEVDDQRGLLHGVLIYQ 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ R+ L D+ +L + + +D+ + I + +
Sbjct: 180 RAGEATYLTKARQARQLPTEQADEARL---ILHDGVTYLLDQAGSHDRILRFGELSLRLQ 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + +S + + + PL V + L +S R
Sbjct: 237 QPQPVVGYKRKAAPTAALARSGNPAEL---AELQWRLSRPLTTVLLALFGVPLSRTAPRR 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I+ + ++Y+ + K++ + G++ V + + + ++
Sbjct: 294 GRFSKILLAALVYA-LIYSASGLAKTWVEHGVVGAVPGIWWINAVMFVVLVALISH 348
>gi|83953614|ref|ZP_00962335.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
gi|83841559|gb|EAP80728.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
Length = 376
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/363 (9%), Positives = 107/363 (29%), Gaps = 15/363 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY +L +F L + + ++ + +++ + +P +I
Sbjct: 4 FDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIG-DGQTALVFLEFTVLGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T ++ V + SEL + +A G S W+L P V + + I ++ + +
Sbjct: 63 TVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHLLL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK------ILPENHIWED 178
+ + N + ++ ++ + + D
Sbjct: 123 PLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRNPD 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I + +I D I+ + +++ + +I + +
Sbjct: 183 ESVIYTASEAYLIRNGDGTTLIMVDGMA--QRLEMAGKRLSTAKFRDFSFDISSLVSSDK 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
++ + + E+ + + + +I A++ L
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGDIAEELAQRFSSAAFCMIAAMIGYATLVLG 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK--SGILLPVAAALIPVILTISLSILIL 355
+ L + + + + + +P ++ + I ++
Sbjct: 301 GFSRFGVWREIVIAFGLLIALDGLRGTLVDTVRDDASRWPLL---FLPSLIGAVIVIGMI 357
Query: 356 LQK 358
Q
Sbjct: 358 WQT 360
>gi|294637821|ref|ZP_06716093.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
gi|291089020|gb|EFE21581.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
Length = 366
Score = 77.8 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/341 (11%), Positives = 114/341 (33%), Gaps = 7/341 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V + G + +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKSVLIKAAMVLAFFTGALALANAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + +F+G K + ++ +
Sbjct: 121 SPWSSLHSDEVMAEAKANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHDVFLAQLRPS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ L + + K+ +Y + ++ + S
Sbjct: 181 GSQRPSVVVADSGHLVEMKDGGQKVVLDSGTRYEGTAMLRDFRITDFVDYSALIGHKSTM 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + +F++ + + ++ M L+ +S+ R +
Sbjct: 241 LDPNNADQ-----ASMSALWHSDEPSFRAEFHWRLTLVFSVLVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + + + + + + ++S G G L P+
Sbjct: 296 V-LSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPMIWMWAVN 335
>gi|226329629|ref|ZP_03805147.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
gi|225202815|gb|EEG85169.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
Length = 343
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/330 (12%), Positives = 114/330 (34%), Gaps = 7/330 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ F L EI N + L +P + Q I+P + ++ + L
Sbjct: 1 MLIFFSQKLVEILG-AAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYV 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + A GI L+ ++ S+L + + +++ K N
Sbjct: 60 ESEITVMNACGIGKKALVQAALLLSLLTSALAAGNVIWLIPWSSVHQEQVLEDAKANPSL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ S+ +++G+ K ++ T D++ ++ + N
Sbjct: 120 AALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQDQRPSVVVADKGYTKELPNG 179
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+ +Y + ++ + + + ++
Sbjct: 180 NQIVVLSEGTRYEGTAVLRDFRITDFNDYQAVIGHRES-----TINRNRVEQKTMSELWH 234
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ + +F++ + + +V M ++ +S R + + + + + + + +
Sbjct: 235 SNETESIAEFHWRLTLIFSVVIMAVMVVPLSEVNPRQGRV-LSMLPAMLLYLVFFLLQSS 293
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILI 354
+ S G+ G + P+ A + ++L+IL+
Sbjct: 294 LHSNGEKGKVDPLIAMWSVNGVYLALAILL 323
>gi|163868028|ref|YP_001609232.1| hypothetical protein Btr_0827 [Bartonella tribocorum CIP 105476]
gi|161017679|emb|CAK01237.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 396
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/360 (12%), Positives = 109/360 (30%), Gaps = 9/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K L+ A+ + + + + N ++ + + VP
Sbjct: 1 MRIIEFYILKRVFFLFSSVLIAAVGVSWTVQILARIN-FLTTSKQTLLTVLQFSLSLVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +IPF ++ +N+ SEL + A G + P ++ +I+ + + N
Sbjct: 60 VIFLVIPFALVIAVTTTLSAMNQESELAVINASGFPKSTVWKPVLLLAIVASCISFSIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + Q I IG +
Sbjct: 120 FVVPQARLHMRQMLASAHFDLINLFISEGSF-QKLANNLYIEIGERNPNGTLERLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDG 236
K + ++ + L + ++ T ++ +
Sbjct: 179 RDPKTDLFYYATKASIVSNKNGRFLILNNGEIERVNHENNSVSIVQFSAYTFSLGEFIPS 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + RS + + + + +F+ + L + +LIA + +
Sbjct: 239 DKTPTLYPKDRSLSYLQNP-DPKDPYYQRKPLQYKAEFHRRLTQWLYPIVFSLIALAAAG 297
Query: 297 EFSRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
Q R I F++Y I K+ + + P+ ++ + ++L
Sbjct: 298 NVGSHRQARYCANFSAIALSFLVYWIGYFFAEKAKNDLAYVPLLYITPIGTSLFVFFMLL 357
>gi|56708376|ref|YP_170272.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670846|ref|YP_667403.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134302361|ref|YP_001122330.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
WY96-3418]
gi|224457506|ref|ZP_03665979.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370999|ref|ZP_04987002.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875199|ref|ZP_05247909.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604868|emb|CAG45952.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321179|emb|CAL09335.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134050138|gb|ABO47209.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569240|gb|EDN34894.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254841198|gb|EET19634.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159995|gb|ADA79386.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. tularensis NE061598]
Length = 360
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/349 (9%), Positives = 97/349 (27%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAV 346
>gi|49474101|ref|YP_032143.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
gi|49239605|emb|CAF25962.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
Length = 396
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/361 (13%), Positives = 113/361 (31%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K L ++ A+ + + + + N ++ + + VP
Sbjct: 1 MRIIELYILKRILILFSAVMIAAISISWTVQILARIN-FLTTSRQTLLTVLQFSLSLVPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +IPF ++ +N+ SEL I A G + P ++ +++ + L+ N
Sbjct: 60 VIFLVIPFALVIAITSTLSAMNQDSELAIISAAGFPKSTVWKPILLLALIASCASFLIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ + + + Q I IG +
Sbjct: 120 FVAPQARFHMRQMLANAHSDLINLFINEGSF-QKLANNLYIEIGERNPDGTLGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K + ++ + + L + + + +F
Sbjct: 179 RDPKIDFFYYATKASIVSNKSGNFLVLNNGEIERINHQNDSVSIVQFSFYTF--SLSEFI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + +S+ + Y + +F+ + L + +LIA + +
Sbjct: 237 PNDKTPTIYPKDRPLSYLLNPDPKDPYYQRRPLQYRAEFHRRLTEWLYSIVFSLIALAAA 296
Query: 296 L-EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S I ++Y I KS + + P+ ++I + ++
Sbjct: 297 RDARSYRKTRNFANFSAIAFSLLVYWIGHFFAEKAKSDLAYVPLLYITPIGVSILVFFML 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 369
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 66/360 (18%), Positives = 126/360 (35%), Gaps = 22/360 (6%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
K +++T L L L+ ++ L E + S + +P I +IPF
Sbjct: 11 IKDFVRTFLVLLFSMSCLLSIVGLIEKIDDFMPYK-PSTTFFIEYGLYSIPRYIFYLIPF 69
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+TLV ++ +F R+ E +I G + LL PF++ I++ I + + K
Sbjct: 70 VTLVTSLFIFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFGEFLQPEFTK 129
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+I++ G + +D + + D I I K +
Sbjct: 130 KLNFMIEELTQKGKSSIQKE-----LFVRAKDGTVIKIGKFSQQQKKADEVKIFIIKNDA 184
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ--KFSEQFASR 247
+I R D+ A I D+ KLK + Y + ++K K ++
Sbjct: 185 LIKRIDSQEAEIEQDQWKLKNSIVYDFVAGKVEKYDLMDYPLNLKISIAAFKDIKKIEEF 244
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
E+I+K K N + +T + + M ++ S+ L
Sbjct: 245 GIAELIQKRKELKKVG-LSNPKIDTDISSRLSYNFVTFFMMILGMSLPLGAYEKFNFLFS 303
Query: 308 -------------VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V G+ + + + ++ G S IL P + I ++ +SI +
Sbjct: 304 KGKGGSAAGGIITVGIGLVITIIYWLVYSLFMFMGYSKILPPFISPWITPLIFGFVSIKL 363
>gi|83942394|ref|ZP_00954855.1| membrane protein, putative [Sulfitobacter sp. EE-36]
gi|83846487|gb|EAP84363.1| membrane protein, putative [Sulfitobacter sp. EE-36]
Length = 376
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 106/363 (29%), Gaps = 15/363 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY +L +F L + + ++ + +++ + +P +I
Sbjct: 4 FDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIG-DGQTALVFLEFTVLGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T ++ V + SEL + +A G S W+L P V + + I ++ + +
Sbjct: 63 TVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHLLL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK------ILPENHIWED 178
+ + N + ++ ++ + + D
Sbjct: 123 PLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRNPD 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
I + +I D I+ + +++ + +I + +
Sbjct: 183 EGVIYTASEAYLIRNGDGTTLIMVDGMA--QRLEMAGKRLSTAKFRDFSFDISALVSSDK 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
++ + + E+ + + + +I A++ L
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGEIAEELTARFASAAFCMIAAMIGYATLVLG 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK--SGILLPVAAALIPVILTISLSILIL 355
+ + + + + + + +P ++ + I ++
Sbjct: 301 GFSRFGVWREIVIAFGLLIAIDGLRGTLVETVRDDASRWPLL---FLPSLIGAVIVIGMI 357
Query: 356 LQK 358
Q
Sbjct: 358 WQT 360
>gi|156502931|ref|YP_001428996.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|156253534|gb|ABU62040.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 360
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/349 (9%), Positives = 97/349 (27%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + I+ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIHIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 239 YNHNRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAV 346
>gi|92117863|ref|YP_577592.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
gi|91800757|gb|ABE63132.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
Length = 389
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/361 (9%), Positives = 121/361 (33%), Gaps = 16/361 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + +Y F+ L + + L+ ++++ + + +I + + +P+
Sbjct: 1 MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGID-LMTSQGQTILTFLGITSLAIPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 60 LVLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVVVALLVAFIAA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHI 175
+A G + + + + + I ++ I ++
Sbjct: 120 YLAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRVRERQPGGLLVGIFIDDRR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + ++ + I+ + ++ + + + + +N+ ++ +
Sbjct: 180 NPNERLSIVADHGTVMKNDNGSFLILEDGHLERLEAGKREPNMVAFRRNAFDMSKFS--N 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV- 294
R +E+I ++ + + + P+ A + +
Sbjct: 238 RGHDVVYGIRERYLWELIAP-EPTDPLVQQLPGQFRAELHDRFTAPIYPFAFAALTFAFL 296
Query: 295 -SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ +R ++ + I + F L + P+ L +L ++ +
Sbjct: 297 GTPRTTRQSRN-FSMGAAIVTVFGLRMAGFALSVMAVKSPTAPLLQYL---LLFAAIGVS 352
Query: 354 I 354
+
Sbjct: 353 L 353
>gi|89256769|ref|YP_514131.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115315160|ref|YP_763883.1| hypothetical protein FTH_1434 [Francisella tularensis subsp.
holarctica OSU18]
gi|167010910|ref|ZP_02275841.1| hypothetical protein Ftulh_09393 [Francisella tularensis subsp.
holarctica FSC200]
gi|254368060|ref|ZP_04984080.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
holarctica 257]
gi|254369660|ref|ZP_04985670.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
gi|89144600|emb|CAJ79919.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115130059|gb|ABI83246.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|134253870|gb|EBA52964.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
holarctica 257]
gi|157122619|gb|EDO66748.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 360
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/349 (9%), Positives = 97/349 (27%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + I+ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 239 YNHNRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAV 346
>gi|163856081|ref|YP_001630380.1| hypothetical protein Bpet1772 [Bordetella petrii DSM 12804]
gi|163259809|emb|CAP42110.1| putative membrane protein [Bordetella petrii]
Length = 397
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/317 (12%), Positives = 106/317 (33%), Gaps = 4/317 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
LAA + ++ + + R SE+V+ A G+S+ L
Sbjct: 72 GTIGADVVLGLAAFSTITALPTVLAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 131
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P + +I + ++ + + + ++++ D K + S Q +F
Sbjct: 132 PVLRVAIPVAGLVAVLTLVASPWAYRQIAEYRERFEQRSDLSKVTAGQF-AESGEGQRVF 190
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ + + F T + + ++ A + N L ++Y P
Sbjct: 191 FAEEPTQASDELGNVFARETGPEWHSVMTASSARIETEPNGDRFLVLGRGHRYDLKPGTP 250
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY--FLIVIP 281
++ + S + + + + + + + + +P
Sbjct: 251 EIRLVDFAKYGVRLESKSGDPIAEARAAAERSSKARPTMQLVADDTDSSWSQIMWRVSMP 310
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L + + L+A + R + ++ G+ G + +I + +++ SG L
Sbjct: 311 LAALNLALLAIPLGAVNPRLGRSGDLLIAGL-VGLLYMNVINLSRAWISSGKLPFGIGVW 369
Query: 342 IPVILTISLSILILLQK 358
+ ++L+ +L+++
Sbjct: 370 AVHAVVLALAGYLLMRR 386
>gi|257454352|ref|ZP_05619615.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
gi|257448255|gb|EEV23235.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
Length = 385
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 111/356 (31%), Gaps = 8/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + T LL M L+ L + + + +P +
Sbjct: 10 ILRRYMTQQVAANTAIVLLFLMALMLGGRLIRYFG-IAAEGRLDVGLLFAIIGYNIPTFL 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++V + E+ + A GIS +L + L IF + +
Sbjct: 69 ELILPLSFFIALMLVLGRMYVDQEMSVLFASGISRGRLTRLMIPLITGLFIFQMGISLLA 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW---EDFT 180
G + Q ++ N + K+ +++ +
Sbjct: 129 KPWGLSNSKQIWQTQSLGSLLDLVRPKTFISSGNYHLYVDEFNKEKRELKNLYVVQQQTD 188
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
KN +I + D ++ +Q R + N+ N
Sbjct: 189 KSGKIAKNDVIITATRAYQVPSKDTDSSMQLDLFQGRRYELGTNNAKYNQASFEKYRITL 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + ++ + + + + + +P +++ ++A ++ R
Sbjct: 249 EKPASETITETNVETQTTAKLLAHTQKPEVKAELGYRFTMPWLIIIAAMLATPLAQVRPR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ ++ + +II++ + GK + A ++ ++ +LL
Sbjct: 309 QGRWLRLLPSVLIFASCAISIISLRTAIGK-ERISEYAYIW---LIVGFIAFALLL 360
>gi|260914418|ref|ZP_05920887.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
gi|260631519|gb|EEX49701.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
Length = 368
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 115/351 (32%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLIKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVLSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVMLLSLLTASIATYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++Q+ K N ++ ++ + +FI ++ D
Sbjct: 121 TPWAINKQSEILQEAKANPTMGALAAGQFISTNSNEFVLFI----DKIVDNQINDVYLFQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + +++ + + D +Q +
Sbjct: 177 TRERGNLKPAVLVAERGELKSLPNGDQILTLENSERVEGSAALPDFRITHFDEYQAYLGH 236
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +++S + N A+ + + + + L + M LIA +S R +
Sbjct: 237 QDINNEKNEAEELSVNELLNSTSPA-AKAELNWRVSLVLAVPLMALIAVPLSRVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + ++ ++G SG L ++ L +L+
Sbjct: 296 FAKVLPALLLYLIYFLLQSSLKSAWG-SGKLDGAFLMPFVNLVFFMLGLLL 345
>gi|88800547|ref|ZP_01116109.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
gi|88776692|gb|EAR07905.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
Length = 353
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/355 (12%), Positives = 123/355 (34%), Gaps = 13/355 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K LL L+FV + + + Y++ + + + + + I
Sbjct: 7 YLVKQTSLMVSIVLLAIAGLLFVTGIADEAAR-RMTDTYTLQSAVIYKFSTLSAEVYEYI 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
I ++ ++ + N+ EL I + S LL ++ +++L + A S
Sbjct: 66 GVIVMLGTLITVASFNKHQELTIIQLSAASAPALLLRLLLPALILLPIVYGIGEFAAPSW 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ G+K + W + +N ++ + + T ++ +
Sbjct: 126 QNNAEQARA--LLRGEKNPTLRGQWYKANNEYVNV-----EFISNETELTGITRFQMNPQ 178
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----PIKMDGFQKFSEQ 243
+++ + A+ + L +E + ++ + ++ + + + +
Sbjct: 179 KQLMAASYSKRAVYSDGSWVLINTIEVKRTERGFERKTMGISSWENAVFTPELVRNLALE 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + E+ ++ F ++ E + ++ PL + + +A + + R
Sbjct: 239 SSNLTLPELWTQVRFRAEAGTLTPA-LERTLWNRVLFPLQYIGLMFVALAFAFGSFRQKT 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ G + +I + + + AA L+ L L+ +L ++
Sbjct: 298 IGDAAFKALVLGVISGLLIDTLSASLMVLAMPAFAAVLVSNSLFTGLAFYLLKRR 352
>gi|237729198|ref|ZP_04559679.1| YjgP [Citrobacter sp. 30_2]
gi|226908927|gb|EEH94845.1| YjgP [Citrobacter sp. 30_2]
Length = 366
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 119/351 (33%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQMRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + + I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMNMRTLWTTDTDRARAELTWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G L PV + ++L+I++
Sbjct: 296 V-LSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWTVNLAYLALAIVL 345
>gi|319788014|ref|YP_004147489.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
gi|317466526|gb|ADV28258.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
Length = 361
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/362 (11%), Positives = 121/362 (33%), Gaps = 12/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++++ L L+ + + L ++ ++ + ++
Sbjct: 1 MPK-LDRYLLRDFVQSFLATLIVLLTVSLGGVLVDVLGEIAD-GGLPARLLLSQLGLQLL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + ++P ++ ++ L R SE+ + A+G+ +LL P ++ + + + +
Sbjct: 59 VYLPLVLPLALMLGLMLAVARLYRDSEMAVLNAVGVGPKRLLRPLLMAVVPVVVAVGMCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDF 179
+ ++ ++I+Q + + + + N ++I G +
Sbjct: 119 LWLGPWAQRTAANMIEQANRSLIVAGLEPGRFTSLPNGGGIVYIDGMSEDGRTLQGVFLQ 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + ++L + L+ + +
Sbjct: 179 RERDGRVDVVTARTGSLEFGGDRDRFLRLADGRRLEGPLEQG------LDFRLMRYAVNE 232
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++ + A + + + PLM +A L+ ++
Sbjct: 233 VALPDRAEERADDDPAIAPTLSLFNDGRPAAIAELHGRLTPPLMALAFALLTVPLARSSP 292
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + + G + + ++ I G L + ++L+I + L+
Sbjct: 293 RQQRYG-RLMLGFLAYLVGLNLMFIGVRMLADGKLPAPVGLWWLTLPLMALAIWLYLR-- 349
Query: 360 DG 361
DG
Sbjct: 350 DG 351
>gi|113460662|ref|YP_718728.1| permease [Haemophilus somnus 129PT]
gi|112822705|gb|ABI24794.1| conserved permease [Haemophilus somnus 129PT]
Length = 367
Score = 77.4 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 125/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K ++ + L ++L F L + + L + +P +
Sbjct: 2 ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSAS-VGKIPADLVFALLSLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I LI K N ++ + N +FI K I+
Sbjct: 121 SPWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEIKNNQIQDIYVFQMENK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++K + + L ++ N L+ + + D T + ++
Sbjct: 181 KNQKPSVTVAETGQLKVLPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTD 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + ++ + + + + ++ + + + M LIA +S R
Sbjct: 241 KDTSETEILSLKELINSKSPAA-------KAELHWRLTLIFAVPIMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + +KS G SG + + I + L++L+
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFLAVLL 345
>gi|121602513|ref|YP_988823.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
gi|120614690|gb|ABM45291.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
KC583]
Length = 396
Score = 77.4 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/364 (12%), Positives = 111/364 (30%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K + + +++ + + N + ++ +P
Sbjct: 1 MRILELYILKRIFILFSAVITATVCIIWTVQILARIN-FLTTSGQTFLTALYFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +IPF ++ I +N+ SEL I A GI + P + +IL + + N
Sbjct: 60 VISLVIPFALMIAIITTLSRMNQDSELTIISASGIPKTTIWKPILFLAILASCASFFITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +++ + + Q I IG +
Sbjct: 120 FVAPQARLHMREMLASAHSDLINLFIHEGSF-QKLTNNLYIGIGERYPDGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDG 236
K A ++ + + L + +S T N+ +
Sbjct: 179 RDPKIDLLYYATKGAIVSNKSGNILVLNNGEIKRLNHQNDSVSIIKFSSYTFNLSEFIPN 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS- 295
+ + R + + + + + + +F+ + L + LIA + +
Sbjct: 239 DRIPTIYPKDRPLSYLYRP-DPDDPNYQRQPLQYKAEFHRRLTEWLYPIVFALIAVAAAG 297
Query: 296 -LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + I ++Y + ++ + + P+ +I + +
Sbjct: 298 DARSYRQARISTTFF-AIIFSLLIYLVRYFFVEKTENNLAYIPLLYITPLGTSILIFFRL 356
Query: 355 LLQK 358
L+ +
Sbjct: 357 LINR 360
>gi|319408320|emb|CBI81973.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 396
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 113/362 (31%), Gaps = 13/362 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y K ++ A+ + + + + + ++ VP
Sbjct: 1 MRIIELYILKRVFILFSAVMVAAIGISLTVQVLARID-FLTTSGQTFLTVLYFSSLLVPP 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I IIPF ++ + +N+ SEL I A G S +L P ++ +I + + N
Sbjct: 60 VISLIIPFALVIAITTILSTMNQDSELAIISASGFSKNTVLKPILLLAIFTACTSFSIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ + + + I IG +
Sbjct: 120 FVAPQARLNMRQMLANTHSDLINLFIREGSFQAL-TNNLYIEIGERYPDGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+K A ++ + + L + + N +F
Sbjct: 179 RDSKIDLLYYAKKGAIVSNKNGNFLVLNDGEIERVNYQNDSVSIIKFNSYTF--SLSEFI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVS 295
+ Y + +S+ + + Y + + +F+ + L + LIA + +
Sbjct: 237 PNNGVPTIYPKDRPLSYLLHPDPYDPYYQRNPLQYKAEFHRRLTEWLYPIVFALIAVAAA 296
Query: 296 --LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R IV I ++Y I K+ + + P+ +++ + +
Sbjct: 297 GDARSHRQAHTSAIVFT-ITFSLLIYWIEYFFAEKTKNDLTYVPLLYITPIGVSVLIFFM 355
Query: 354 IL 355
+L
Sbjct: 356 LL 357
>gi|115379865|ref|ZP_01466928.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
gi|115363124|gb|EAU62296.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
Length = 315
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/281 (13%), Positives = 96/281 (34%), Gaps = 9/281 (3%)
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+ E+ RA+ L P ++ + + + + ++ Q +
Sbjct: 24 KRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDERVVAQASRRVDEITTQRFNRWG 83
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ P + F+ + + D +T+ K+ R DAD +
Sbjct: 84 DWRLYYTPKQWFRRGEHVFFLRSGSAQEG---FRDVAILTLTADFKLARRLDADTMVPLE 140
Query: 204 DKVK-LKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
L VVE + ++ + F + E+ +++S
Sbjct: 141 GNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLIRPGRPEQMRLPELREQISA 200
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ + + E Y P+ + L+A ++L +R + + G+ +
Sbjct: 201 RTEVG-LDSRQYELALYNRFAYPMAGLPAALVAVGLALRPNRKGHLTVAIVEGLLIAMAM 259
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ +I + K+ + + P AA +P + + ++ ++ L++E
Sbjct: 260 WGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWLRRE 300
>gi|299771880|ref|YP_003733906.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
gi|298701968|gb|ADI92533.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
Length = 366
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 122/355 (34%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRATK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + +I K+A + ND + +V+ + I + T +
Sbjct: 181 EDKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ +S + + ++ ++ + + P ++ +++ ++S R +
Sbjct: 239 KDVKFESGDVEALSTTKLFSKTNDPVIRSELGWRLFGPFTIIIALMLSVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ L A V++ ++ + +K
Sbjct: 299 YYRLIP-AIFIFSSLIVLMIAIKTRISKEELDIW--AYPAVLVVYGVAAALFSRK 350
>gi|255321867|ref|ZP_05363017.1| tRNA-I [Campylobacter showae RM3277]
gi|255300971|gb|EET80238.1| tRNA-I [Campylobacter showae RM3277]
Length = 353
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/348 (13%), Positives = 107/348 (30%), Gaps = 5/348 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY Y K + + + ID+ M N + + +
Sbjct: 6 RYVGWLYFKYFVILFIALTLFYVGIDILTNLKDMPASANLK----LLYFGLTSLTAVNYV 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I F++ R++ELV A+GI +L+ P ++ + + V +
Sbjct: 62 LPLALIFALITSKFSMIRSNELVSFYALGIDKNRLIKPPFYIALAITLIYVGLNFTPFAY 121
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ G ++++ + + + I + + +
Sbjct: 122 AYEYGRNIVKLSNLSRTSSDIFLKFEGKFVYMDSLNPISGEAKDVRIFDIDSSNLRSATF 181
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
DA L + + + G + K + S + ++
Sbjct: 182 GESGKFIDDAWLLKEAKIVNLPQNIKLGEKGLDIKTPSGLKTLEGFKPKTIESASAENSA 241
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + + + I N +T Y L P M LI R +
Sbjct: 242 ITISDAVDYILAFKDEGIGLNS-TKTTLYNLAFAPFFAPFMVLIIYYFLPVTGRFFNLAL 300
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + +M F ++G++ P L+P+IL + + +
Sbjct: 301 KSFIFTIASLCVWGALFVMMRFARNGVVSPEIGVLLPIILLGAYAFYL 348
>gi|213963082|ref|ZP_03391340.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
gi|213954166|gb|EEB65490.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
Length = 508
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 73/253 (28%), Gaps = 1/253 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY +LK L L +++ + +++ + +P
Sbjct: 1 MKIIDRYIITQFLKNFLGALSILILIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ F + + E +A GIS+ +++ P ++ LL I T + N
Sbjct: 60 LIPIIMPLAVVIASIMTFGSFAESYEFAAMKASGISLMRVMRPLIILMALLSIGTFFLAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L + I +
Sbjct: 120 NVIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKSGDNDQFLESVLIHK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T D+ N+ + +++ K +T F
Sbjct: 180 KTPDRVNRTVINAKRGELKSAKSNPNFLQLILEDGTYYEDIKTNTYETQQKMPFAKVHFK 239
Query: 242 EQFASRSFYEIIK 254
+ + +
Sbjct: 240 KYVINLDLSHLNN 252
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+ + + +AA + R + + + + Y I MK
Sbjct: 373 MNLHIMNLSDKFALTIACFVLFFVAAPLGA-LIRKGGIGLPLVFAMILFLSYYFIGMFMK 431
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ ++ + P A IP ++ + L I + +
Sbjct: 432 NIAENNTINPALAPWIPALILMPLGIYLTARI 463
>gi|238787644|ref|ZP_04631442.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
gi|238724431|gb|EEQ16073.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
Length = 364
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 121/356 (33%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDEVLTDARANPSLAALAGGQFKSSTDGNSALFIGNVSGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQ---YGRIPIDKNSTTLNIPIKMDGFQ 238
+++ ++ + + L K Y+ R + I Q
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQTIIGHQEVQ 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + ++ A +F++ + + + +V M L+ +S+
Sbjct: 241 QDNSVAEQMTMRQLWHATE----------PDARAEFHWRLTLIVSVVIMALLVVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T ++S G L P+ ++L++L+
Sbjct: 291 PRQGRV-LSMLPAMLLYLIFFLLQTSLRSNASKGKLDPLVWLWAVNGAYLALAVLL 345
>gi|170718034|ref|YP_001785074.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
gi|168826163|gb|ACA31534.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
Length = 367
Score = 77.0 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K ++ + L ++L F L + + L + +P +
Sbjct: 2 ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSAS-VGKIPADLVFALLSLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I LI K N ++ + N +FI K I+
Sbjct: 121 SPWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEIKNNQIQDIYVFQMENK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++K + + L + N L+ + + D T + ++
Sbjct: 181 KNQKPSVTVAETGQLKALPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTD 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + ++ + + + + ++ + + + M LIA +S R
Sbjct: 241 KDTSETEILSLKELINSKSPAA-------KAELHWRLTLIFAVPIMALIAVPLSRVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + +KS G SG + + I + L++L+
Sbjct: 294 GRFAK-ILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFLAVLL 345
>gi|291296718|ref|YP_003508116.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471677|gb|ADD29096.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 346
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/343 (13%), Positives = 109/343 (31%), Gaps = 13/343 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY K + L L ++ + L E+ + + A RVP
Sbjct: 1 MSVLDRYLIKEVGASVLGALAVVVLALLGGALYEVLAPLLAR-GADPWVVSQYLAFRVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P L ++V + SEL A G+S ++L P ++ LL + + +
Sbjct: 60 ALVRGAPLAFLFALLLVLSRMGEESELKAMLAGGVSKLRVLFPLLLLGTLLFVICLAAAD 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + G ++++Q + I + + I +
Sbjct: 120 SLVPRSLQQGQNVLRQAVLQKPRALLQPGT----RLVDAYGRIVYVGEVSDAGIGQVRVI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ R + ++ P ++ +
Sbjct: 176 TAEEILVAEQGRFEQGTLVLSQGMRVTYGG------ARPRTVARFERATVPLVELSLEPP 229
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S + E+ ++++ + ++ T + P + + + A ++ F
Sbjct: 230 GGLFSLTVAELRQRIAQYRAQGLPYHAE-LTALHRKWAEPAAVYSFAIFAVGLAF-FLLG 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + + F+ Y ++ + G+ G+L P+ AA P
Sbjct: 288 GSRSLGMLGVVVLTFIYYATWSVGRIMGEQGVLHPILAAWGPN 330
>gi|293610039|ref|ZP_06692340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827271|gb|EFF85635.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 366
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 123/355 (34%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ +F +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + +I K+A + ND + +V+ + I + T +
Sbjct: 181 EDKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ +S + + ++ ++ + + P +V +++ ++S R +
Sbjct: 239 KDVKFESGDVEALSTTKLFSKTNDPVIRSELGWRLFGPFTIVIALMLSVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ L A V++ ++ + +K
Sbjct: 299 YYRLIP-AIFIFSSLIVLMIAIKTRISKEELDIW--AYPAVLVVYGVAAALFSRK 350
>gi|262370181|ref|ZP_06063508.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315220|gb|EEY96260.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 366
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 119/355 (33%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLGRLLIPMTVVFLAVQAVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G + L ++ ++ I+ +
Sbjct: 121 APWGVRQFEQLTTSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAEA 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K + +I K+A I ND + +V+ + I + +
Sbjct: 181 EGKPDVMILAKEATRVEIENDPANVVDLVQGRRYEIYP--GQPRYSQAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ ++ +S + ++ ++ + I +P +V L+A ++S R +
Sbjct: 239 KEAKFESADVEALSTMKLWDNRNDPVVASELGWRIFVPFAIVVALLLAVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + ++ ++ I K + A +++ +++ + +K
Sbjct: 299 YLKLFPALLIFASLIVALMAIKTRVSKEEV---GIGAYPLILVIYAIAAALFSRK 350
>gi|262280663|ref|ZP_06058446.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257563|gb|EEY76298.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 366
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 121/355 (34%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPITLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ ++ I+ +
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + +I K+A + ND + +V+ + I + T +
Sbjct: 181 ADKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ +S + + ++ ++ + + P ++ +++ ++S R +
Sbjct: 239 KDVKFESGDVEALSTTKLFSKTNDPVVRSELGWRLFGPFTIIIALMLSVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ L A V++ ++ + +K
Sbjct: 299 YYRLIP-AIFIFSSLIVLMIAIKTRISKEELDIW--AYPAVLVVYGIAAALFSRK 350
>gi|296104924|ref|YP_003615070.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059383|gb|ADF64121.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 359
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/344 (13%), Positives = 118/344 (34%), Gaps = 7/344 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ LK+ L L +++ F L +I + + L +P + Q I+P
Sbjct: 2 RETLKSQLAILFILLLIFFCQKLVKILGAAVD-GEIPTNLVLSLLGLGIPEMAQLILPLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ ++ L SE+ + A G+S L+ ++ ++ GI + + +
Sbjct: 61 LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAAVNVMWAGPMSSRH 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+++ + K N + Q ++ +FI + N ++ + + +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATDGNSVLFIESVDGSKFNDVFLAQLRTKGNARPSV 180
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
+ LA + + ++ + ++ + + +
Sbjct: 181 VVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIG-----HQAVALD 235
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ RA +F++ I + + M LI +S+ R + + +
Sbjct: 236 PTDTEQMDMRTLWNTDTDRARAEFHWRITLVFTVFMMALIVVPLSVVNPRQGRV-LSMLP 294
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + T ++S G G L P+ L I L++ +
Sbjct: 295 AMLLYLIYFLLQTSIRSNGAKGKLDPMVWTWFVNSLYILLALGL 338
>gi|126640322|ref|YP_001083306.1| hypothetical protein A1S_0229 [Acinetobacter baumannii ATCC 17978]
Length = 266
Score = 76.7 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 84/267 (31%), Gaps = 3/267 (1%)
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
R++GIS+W+++ + ++LL + + + + + + +
Sbjct: 1 MRSVGISLWRIVGWVMRSALLLIVLSFALSEWVVPYTNEKAQSVKS--HRSVAALGEVKG 58
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
W + I + + DF + + + + +
Sbjct: 59 YWSREGQRFIYIDYANSQGNLRDIQVVDFNKDYHLQSLINAEQGKFIQDGQWTLQKASQM 118
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ I + + +L + ++ + S ++I M + ++ +
Sbjct: 119 DILTDGNSILNNHDQQSLGLALQPKYVHMVTLDPEDLSPSQLISFMRYMDEYSQVPKT-Y 177
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ F+ + P L+ + L+A S R + +F G Y + +
Sbjct: 178 QLAFWQKVASPFSLITLVLVACSFIFGPLRQQSMGFRLVIALFIGLGFYYLQDFLGYASL 237
Query: 331 SGILLPVAAALIPVILTISLSILILLQ 357
P L+P+IL +L +
Sbjct: 238 VYAPSPAWFVLMPIILMFGAGSYLLYR 264
>gi|325292487|ref|YP_004278351.1| permease protein [Agrobacterium sp. H13-3]
gi|325060340|gb|ADY64031.1| putative permease protein [Agrobacterium sp. H13-3]
Length = 389
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 113/356 (31%), Gaps = 4/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ I + + N + + S+ LA +P
Sbjct: 1 MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDT-GQSMGSFMALATMILPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++PF ++ F +N SEL I A G S + P ++ + +L + + N
Sbjct: 60 LIPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRPVIILAAVLSALSFTITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I ++ + + + + + + + + D
Sbjct: 120 FIEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDGLYVQIAQRQGRILKGLFVADRRD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + + + + S ++ +
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDGKVSIVKFLSYAFDLSTMSEKQTSEP 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS--LEFS 299
+ + +N S ++ + + + A LI+ ++
Sbjct: 240 SLSPGDASLGFLLSPDENNASYKRSPESFRSELHKRLSDWMFAFAFALISLVIAADARSH 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +VA + + + + + +S +P+ A +P + + + +++
Sbjct: 300 REARMHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYA-VPGLSGAAAAFILI 354
>gi|223038562|ref|ZP_03608855.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
gi|222879964|gb|EEF15052.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
Length = 353
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/348 (13%), Positives = 103/348 (29%), Gaps = 5/348 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY Y K + + + ID+ M N + + +
Sbjct: 6 RYVGWLYFKYFVILFVALTLFYVGIDILTNLKSMPASANLK----LLYFGLTSLTAVNYV 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I F++ R++ELV A+GI +L+ P ++ + V +
Sbjct: 62 LPLSLIFALIASEFSMIRSNELVSFYALGIDKNRLIKPPFYIALTITFVYVGLNFTPFAY 121
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ G ++++ + + + I + +
Sbjct: 122 AYEYGRNIVKLSNLSRTSSDIFLKFEGKFVYMDSLNPISGEAKDVRIFDINGSNLRSATF 181
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
D L + + + G K + + + ++
Sbjct: 182 GLSARFVDDLWLVKQAKIVNLPQNIKLGEKGLDIKRLGELKTLENFKPKTIENAAAESSA 241
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + + + I N +T Y L P M LI R +
Sbjct: 242 ITISDAVDYIQAFKNEGIGLNS-VKTTLYNLAFSPFFAPFMVLIIYYFLPVTGRFFNLAL 300
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + +M F ++G++ P L+PVIL + + +
Sbjct: 301 KSFIFTIASLCVWGALFVMMRFARNGVISPEIGVLLPVILLGTYAFYL 348
>gi|89094618|ref|ZP_01167555.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
gi|89081088|gb|EAR60323.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
Length = 358
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/341 (11%), Positives = 111/341 (32%), Gaps = 9/341 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
++++ + ++ S + A R+P ++ I+P + +
Sbjct: 1 MFAVSAVLLVIIMSGRFVKYLSRAA-AGELDPSVLFSIMAYRLPGFLELILPLGLFLGFL 59
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ + L SE+ + A G+S +L++ + +I + + + ++ G +
Sbjct: 60 LGYGRLYLESEMTVLEATGMSQKRLVSYSMGPAIFVAVIVGSLSLFVSPYGASETNKIFD 119
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ + + + + N + + K + ++ +I +
Sbjct: 120 DQEGRSELESLVPGRFQKNKNTGRVTYTDEVKDDGTLGLVFMADRNHSTQRLQITVAETG 179
Query: 197 DLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
I + + L Y+Y P + + ++ +++ +
Sbjct: 180 STLIDQDKGQRFLVLEEGYRYEGEPGQSDYVEVEFKRYGSEVERRNQEIRYDKVEALPT- 238
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+ Q + + +P++ + +TL+A +S R + + I
Sbjct: 239 ----AMLWGSEEPSHQAQLNWRLSLPVLALVVTLLAVPLSRVNPRQGRFA-RLVPSILIY 293
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
TI++ S G P I + + ++ ++L
Sbjct: 294 LTYITILSNTTSNVSEGETSP-LTIWIVHFVFAAFALNMIL 333
>gi|23008753|ref|ZP_00050063.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 339
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/317 (13%), Positives = 94/317 (29%), Gaps = 6/317 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAK-GQTLLVFLFITGLSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PFV ++ + + T + +
Sbjct: 63 VIAPVALFIACVYALNRLNGDSELIVMSAAGMPPRQLLRPFVTLALAISVVTAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + D++ + + + + + + F ++
Sbjct: 123 PSSFQELRDVLTRVRGDFVANVVKEGQFTALDSGITFHFRERGADGSLQGLFIQDKREAG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKF 240
+ R V K + Q +++ +
Sbjct: 183 KAVVYLAERGRVTEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDSET 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ RS ++ + R + + + + IA +
Sbjct: 243 VYKPRERSTLALL-FPDTREGYYVLQKGRFWAELDERLSAWFYPLVLAFIAFDRLGDPRT 301
Query: 301 SNQPRIIVAYGIFSGFM 317
+ Q R + G G +
Sbjct: 302 TRQGRGMAVAGAVLGVV 318
>gi|222148153|ref|YP_002549110.1| hypothetical protein Avi_1543 [Agrobacterium vitis S4]
gi|221735141|gb|ACM36104.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 399
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 125/361 (34%), Gaps = 9/361 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + N + + SI A LA +P
Sbjct: 6 MKLLESYILRRVAQMFLTALLPVLAIIWTTQVLARINLVTDT-GQSIGSFATLATLILPT 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G S +L P ++ ++ + + T+++ N
Sbjct: 65 IIPIVMPFALVIGITQSLTAMNNDSELAVIDAAGASRAVILRPILLFALAISVITLVITN 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +I + + + + + I +
Sbjct: 125 EVQPKVKVAARQMIANAYADLLSTVIEEKTF-RKVEDGLYVQISQRLAGRVLKGLFVADY 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNIPIKMDGFQK 239
R+ A + +V + +S ++ + K
Sbjct: 184 RDPAYSLIYYAREGAVDETGTALIMHDGEVQRKAPGGTVSIVRFDSYAFDLSDLTETRGK 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + RS ++ ++ H + + + L+ A LI+ +++ +
Sbjct: 244 AKMRPSDRSLSFLLNP-DTNDDDYKDHPGEYRAELHKRMTEWLLPFAFALISLAIA-GDA 301
Query: 300 RSNQPRII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS++ + + + +L + + +S V + + +++ L+L++
Sbjct: 302 RSHREARLHPMVSALTLALVLRWLTFYAANKSESNAAFIVL-MYATPLASAAIATLMLMR 360
Query: 358 K 358
+
Sbjct: 361 Q 361
>gi|291614865|ref|YP_003525022.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
gi|291584977|gb|ADE12635.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
Length = 377
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/357 (9%), Positives = 110/357 (30%), Gaps = 10/357 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GI + + + T L + +V L + + ++ +
Sbjct: 19 GIFYWALVREFASTGLLVSSILLGIVVFTQLIRLLGE-SVSGMLAVDGVLAMLGFTSLNY 77
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ + ++ R SE+V+ GI + + + P + +I + + L+
Sbjct: 78 LPVLLSISLFLSVLLTLSRSYRDSEMVVWFTSGIGLTRWIRPVLGYAIPVTLLIALLSLV 137
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTS 181
++ + ++ D + + + + F+ + ++
Sbjct: 138 LSPWALSKADEFKRRLDSRDDVSAATPGVFRESKQADRVFFLEDVDSQKKRVGNIFVQST 197
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + A + + + Y+ D +
Sbjct: 198 QNGKEGTMVAKEGYQETAPNGDRFLVMLNGTRYEGIPGRADFRIVEFERYAMRIEPAELR 257
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + + + ++ + I +PL + ++L+A +S R+
Sbjct: 258 EDLPHLQAFSTLYLLQN-------PTAWNLSELEWRIGLPLSALILSLLAIPLSYVNPRA 310
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + + +I++ S+ G + P A L +L + +++ +
Sbjct: 311 GR-SLNLIAAMVIYMFYNNMISVTNSWVARGKISPSAGLLGIHLLMFGVMLVLFYHR 366
>gi|262373934|ref|ZP_06067211.1| permease [Acinetobacter junii SH205]
gi|262310945|gb|EEY92032.1| permease [Acinetobacter junii SH205]
Length = 366
Score = 76.7 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 54/355 (15%), Positives = 127/355 (35%), Gaps = 6/355 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L +++ L +I + + + A R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQ-GRLDAGVLLSIIAYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + + + + ++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLAKLLLPMTFVYLLVQSFLMFWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++SG + L+Q ++ ++ I+ +
Sbjct: 121 SSSGIRAYESLMQTQAVRAGFDLVRPKEFISSGPYTIYAGSLSEDRKNLKDIFYYQKAER 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + +I K+A + ND + +V+ + I ++ T +
Sbjct: 181 EDKPDVMILAKEATRVEMANDTANVVDLVQGRRYEIYPNQPRYT--QAEFQSYRLRLEND 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + ++ +S S + ++ + I P +++ L+A ++S R +
Sbjct: 239 KDIKFESDDVEALSMSKLWQKRDDSVVRSELGWRIFGPFVILVALLLAVALSEVSPRQGR 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ IF L ++ +K+ L A V+L +++ I +K
Sbjct: 299 YYRLIP-AIFIFASLIVLMIAIKTRISKEELDIW--AYPVVLLVYAIAAAIFARK 350
>gi|221639315|ref|YP_002525577.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
gi|221160096|gb|ACM01076.1| Permease YjgP/YjgQ family protein [Rhodobacter sphaeroides KD131]
Length = 364
Score = 76.3 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/346 (11%), Positives = 108/346 (31%), Gaps = 9/346 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+F L +++ ++ + + + S + +P +I+ ++P I
Sbjct: 4 FGFFSLVLVLVYWINRAVGLFDDLIS-DGQSALVFLEFSLLALPNVIRLVLPLSAFAATI 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V L++ SELV+ +A G S ++L P + +++ + ++++N + +
Sbjct: 63 YVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSA 122
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ N + ++ ++ + + R
Sbjct: 123 EISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRALL 182
Query: 197 DLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ + + + T ++ M G +
Sbjct: 183 VRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTMTL 242
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFSRSNQPRIIVAYG 311
+ + + A + + I P + A +LI A++ L + +
Sbjct: 243 LAPTADVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSRFGLWWQILFA 302
Query: 312 IFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
+ ++ TI G + L P+ A + ++ IL+L
Sbjct: 303 VLLLIVVQTINVAASGVGVTDEQLWPL--AYAAPVTGFAIGILLLW 346
>gi|332558334|ref|ZP_08412656.1| permease [Rhodobacter sphaeroides WS8N]
gi|332276046|gb|EGJ21361.1| permease [Rhodobacter sphaeroides WS8N]
Length = 364
Score = 76.3 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/346 (11%), Positives = 108/346 (31%), Gaps = 9/346 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+F L +++ ++ + + + S + +P +I+ ++P I
Sbjct: 4 FGFFSLVLVLVYWINRAVGLFDDLIS-DGQSALVFLEFSLLALPNVIRLVLPLSAFAATI 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V L++ SELV+ +A G S ++L P + +++ + ++++N + +
Sbjct: 63 YVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSA 122
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ N + ++ ++ + + R
Sbjct: 123 EISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRALL 182
Query: 197 DLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ + + + T ++ M G +
Sbjct: 183 VRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTMTL 242
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFSRSNQPRIIVAYG 311
+ + + A + + I P + A +LI A++ L + +
Sbjct: 243 LAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSRFGLWWQILFA 302
Query: 312 IFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
+ ++ TI G + L P+ A + ++ IL+L
Sbjct: 303 VLLLIVVQTINVAASGVGVTDEQLWPL--AYAAPVTGFAIGILLLW 346
>gi|152998004|ref|YP_001342839.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
gi|150838928|gb|ABR72904.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
Length = 371
Score = 76.3 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 112/361 (31%), Gaps = 18/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY K L +T L ++++ + ++ + + V+ VP
Sbjct: 1 MTLRLFRYLAKEVLVSTAGVTLILLLVILSGRFSFYLGRIAD-GKMTFEFLFVILGYHVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q I+P + ++ F L +E+ + + GIS +L + + L+G+ + +
Sbjct: 60 SFVQMILPLAFFLALLLSFGRLYIENEMSVLFSSGISKVKLAGYTLGIAFLVGLVSASIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + Q + I K+ D
Sbjct: 120 FWLAPYSEYKAAEASQAQNQLSAFDFLIPGRFEGSGQRTTYIDSFTKEGWMNQIFLSDVV 179
Query: 181 SITIDKKNKIIHRKDADL----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP--IKM 234
+A+ + + + K Y+ + T +
Sbjct: 180 RKKDTNIPIQTFAANAEQIRISSEDNQNYLVFKNGTRYEGKPGTANYRITQFDTYAIRME 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +++ +I + + + I + L++ + +I S+
Sbjct: 240 SKDESIIDDPYTQNTLSLINSDKLLE----------KVELQWRISLVLIIPILAIIGLSL 289
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + I + ++ ++ + G L + I ++ L+
Sbjct: 290 SQVNPRQGR-FFKMLPAILLMILYIALLIWGRTSLEKGKLPIQLGLWWIHGIFILIAALL 348
Query: 355 L 355
Sbjct: 349 F 349
>gi|289806566|ref|ZP_06537195.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 219
Score = 75.9 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 1/163 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+A GE++ + Q G + W + N I
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIER 165
>gi|187931969|ref|YP_001891954.1| hypothetical protein FTM_1332 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712878|gb|ACD31175.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 360
Score = 75.9 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/349 (9%), Positives = 98/349 (28%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNILSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANRSVPVWIGFWLPHIFFTIFAV 346
>gi|242240955|ref|YP_002989136.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
gi|242133012|gb|ACS87314.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
Length = 366
Score = 75.9 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/351 (10%), Positives = 122/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ LL ++ ++L + ++ + +
Sbjct: 61 QLILPLSLFLGLLMTYGKLYAESEITVMHACGLGKSVLLKASLLLAVLTVLLAMVNVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + N + Q + +F+G I+
Sbjct: 121 SPWSSRHQDEVLAEARANPGVASMVEGQFQQTQDGNSVLFVGNVSGQDFERIFMAQLHPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ + + + +Y + ++ +
Sbjct: 181 ENTRPSVVVADRGHIVARNDGAQIVTLNKGVRYEGTAMLRDFRITDFVNYQAVMGHQDVA 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + A +F++ + + L ++ M ++ +S+ R +
Sbjct: 241 IDPTNVEQM-----DMKTLWSSPDIAARAEFHWRLTLVLSVLIMAVMVVPLSVINPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + ++S G L P+ + ++ +++ +
Sbjct: 296 V-LSMLPAMLLYLVFFLLQSSLRSNASKGKLDPLMWMWLTNLVYFGIAVAL 345
>gi|296120596|ref|YP_003628374.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
gi|296012936|gb|ADG66175.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
Length = 373
Score = 75.9 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/368 (12%), Positives = 114/368 (30%), Gaps = 22/368 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS-----ISRGAVLAATR 58
+Y K + + A LV IDL E ++ + +
Sbjct: 3 TFDQYLLKNFFYVFFVCFVAAFGLVVTIDLLENLDEFMLNNQSGGALSLLVSIGTYYGYQ 62
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ + + ++ +VV R+ EL A G+ ++++L ++G +L+ V
Sbjct: 63 AIFFLDRGGASLMVIAVMVVLVLFQRSGELHPMLAAGVPMYRVLRALMIGPVLVTAVLVA 122
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ G + + +IS + + + ++ +
Sbjct: 123 NQELVVPVIAHAAHGGRGIQTGEGGQVEPIYDYSTKISINGEKVSLADSQLEGAQFVLPA 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV-----------VEYQYGRIPIDKNSTT 227
+ + A D + + R
Sbjct: 183 PLIVHDLTIIRGTTAIFRKAAGQRPDGWVIFGAAPQFEELALTPRGQEIVRKVGRSGELF 242
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ P+ D K S E++ ++ + + TQ + + PL+ +
Sbjct: 243 IASPVSCDQLFKRKSSSNYLSTSELLGRIR-NEAYGPLAVQKFVTQVHGRLTQPLINLIA 301
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGF--MLYTIITIMKSFGKSGILLPVAAALIPVI 345
L++ + + R +++ G+ + +L+ ++ + SGI+ AA PV
Sbjct: 302 VLLSLPLLV---RRESAGLVMDSGVCAVAQGILFGMMQLSAYLSTSGIIAADLAAWFPVF 358
Query: 346 LTISLSIL 353
+ +++
Sbjct: 359 IGGAMAAW 366
>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
Length = 400
Score = 75.9 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 119/359 (33%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L L+ + +V+ + + + + S+ +AA +P
Sbjct: 1 MKVVERYIMRRAFVVFLAALVWTLAIVWTTQVLAKIDLVTDSGQSSL-TFFEVAALILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF +V +N SELV+ A G S W ++ P ++ ++ +F+ V N
Sbjct: 60 IIPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAASVFSFAVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + L+ Q + + + +I + IG + S
Sbjct: 120 GIDPYARQKNRALVAQSRADLLSLIIQEGTFRKI-EDGLFLQIGERLPDNRLGGIFVADS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + V ++ + M F +
Sbjct: 179 REEGVNLVYYAKTGSVVERGGEKVLMMNDGVIHRKTLTGDLSVIRFTSYAFDMSAFMAAA 238
Query: 242 EQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + ++K + + L + LIA +V+
Sbjct: 239 SEVTLLPKDQTTQYLLNPNVNDKLYQQAPQQYRAEIDQRFSEWLYSMVFALIALAVA-GD 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLSILILL 356
+RS++ + L+ + K+ + I+ +++I ++
Sbjct: 298 ARSHREARVNPLITAITISLFVRWLGFFAASKADEVPQYAYMVYGVPIVASAVAIWFIV 356
>gi|126725340|ref|ZP_01741182.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
gi|126704544|gb|EBA03635.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
Length = 367
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 110/354 (31%), Gaps = 9/354 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
T +F + + +V + + + + A +P +I ++P
Sbjct: 1 MLSQLTVTFGFFAFILVAVYWVNRAIVLFEDLISDGH-TALVFLEFTALALPNVILLVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V +I V L SE+V+ ++ G S +L+ P ++ + + + ++ + +
Sbjct: 60 VAGFVASIYVANRLISESEMVVMQSAGHSAKRLMVPALIFGVGIFVMMSILSHILVPISR 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + + Q + ++ SN + I +
Sbjct: 120 TALAEREGELSQDVTTQFLNAGRFVHPSNDLTIYVREFSETGELRDILLTDDRSANIQTI 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVE----YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+R V L + + T ++ + ++
Sbjct: 180 YTANRAFLIKTETGPRLVMLSGQTQTLNRTTDRLSFVTFTELTYDLSALIPSSKERVLNM 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSN 302
+++ + Q + PL+ + + L+ +V L F+R
Sbjct: 240 RELFTPALLRGDQADLDRTNSTTAIFKAQAHGRFSKPLLGMILPLLGVAVMLVGGFNRMG 299
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R I+A + + + + + P+ +P++ ++L ++L
Sbjct: 300 VSRQILASAVIIILVQMLFNAGENAAISNPTMWPMI--YLPIVFAVALLWMLLF 351
>gi|304392005|ref|ZP_07373947.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
gi|303296234|gb|EFL90592.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
Length = 402
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 113/361 (31%), Gaps = 15/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY FK L L G + +++V+ + + + I + VP +I
Sbjct: 5 LLERYVFKKALVMVATALAGLVGVIWVVRAVQEVDVIMSK-GQGIMTYLTITTLGVPSLI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + LN SE+V+ A G S W L PF+ + L+ I +
Sbjct: 64 AAVAPLALMIGMVRTISALNDESEMVVMHASGASRWSLARPFLWLAGLMAIMIYFLSLYG 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWE 177
+ + + + + + + K + + E
Sbjct: 124 GPHSLTKMRETVNTMRADLISVVVKDGEFQQLGGGLMFHIATRLPGGELKGVFITDTRDE 183
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + I + ++ +V+ V I D + L+ G
Sbjct: 184 NEHLTYLADSGTISKIGEDAYLVLRQGQVQRTTVKTNNSSFIDFDSYAFNLSTFSGGTGD 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
K + R+ + H +R E F + M I V +
Sbjct: 244 GKSRSRGELRTSELFSPDPADEMFKRAPHRFRVEFHTRFTSG---LYAFMVAIVILVCMG 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PVAAALIPVILTISLSILI 354
+S++ + V I S +L ++ ++ + A +L I S +
Sbjct: 301 NPQSHRQGLTVL--ITSTVVLVILLRGAGILVENNLKATPLLWVAVWGIPLLAIGNSFRL 358
Query: 355 L 355
L
Sbjct: 359 L 359
>gi|45658408|ref|YP_002494.1| hypothetical protein LIC12569 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601651|gb|AAS71131.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 631
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 52/188 (27%), Gaps = 1/188 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L ++ V+ L ++ R + +
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGK-GVDPFRLLDYFGYLLANTL 189
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + + +
Sbjct: 190 PMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYL 249
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + +
Sbjct: 250 SPENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGV 309
Query: 184 IDKKNKII 191
++ +I
Sbjct: 310 QIREWEIF 317
Score = 59.7 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
++ + + + I +P+ + I+ + L RS + + +
Sbjct: 485 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 543
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 544 LMIYFTFFTLGSTISYNDKIPDWIGPWSANILIALLSINIMIKRTD 589
>gi|300023217|ref|YP_003755828.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525038|gb|ADJ23507.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 398
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/367 (13%), Positives = 125/367 (34%), Gaps = 15/367 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +Y F+ + ++ +V++ N + + + VP
Sbjct: 1 MRIFSKYVFRQAAGSFALIMVSLTGIVWIALALRQFN-VVTSQGQDTWMLIKMTSLAVPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I PF L+ + LN SEL++ A G +W P ++ ++L+ IF V +
Sbjct: 60 LMAVIAPFSFLIAALHTLNRLNTDSELIVISASGAKVWTAARPLLLLALLVSIFLAFVSH 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ D + Q + + Q + ++P+ + + +
Sbjct: 120 FAQPWSMRQLRDYMVQVRSDLLTQVIQPGRF---TSPETGLMFHIRDRDANGELLGLVMH 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T DK + + + + L V + R + + + +F
Sbjct: 177 DTRDKAQSQSYLAEHGTLVKQDGTAYLVMTVGHIIRRTDANGPPQIVAFDKYIVDLDRFE 236
Query: 242 EQFASRSFYEIIKKM-------SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q + ++ + S + ++ + V PL +A + +
Sbjct: 237 PQDGGPGDLKPRERYFSELINPDPESSSYKNQPGQFRSELHERFVTPLYPLAFAFLIIAF 296
Query: 295 S--LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ +R+++ + +V + + + I + ++ + A +P+ I S+
Sbjct: 297 VGQAQSTRTSRMQSLVVTFVIAATCRLAGLAITNAMVRNPSM-VAVAYGLPIGA-IVYSL 354
Query: 353 LILLQKE 359
++L + E
Sbjct: 355 IVLKRSE 361
>gi|39936124|ref|NP_948400.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
gi|192291842|ref|YP_001992447.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
gi|39649978|emb|CAE28502.1| possible permease [Rhodopseudomonas palustris CGA009]
gi|192285591|gb|ACF01972.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
Length = 388
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 108/361 (29%), Gaps = 13/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + + ++++ + + +I L VP+
Sbjct: 1 MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGID-LMTSQGQTIITFLGLTGLAVPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S +L PF ++++ +++
Sbjct: 60 LVLVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVIIIGA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA G + + + + + +Q + I ++ P + F
Sbjct: 120 YIAPDGLRRIARWDSEITADVLANVLQPGRF---AQLEQGLTIRVRERQPGGLLVGVFID 176
Query: 182 ITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MD 235
++ D + + + L+ ++ + +
Sbjct: 177 DARAPNERVSIIADHGTVVKNDKGSFLVLEDGHLERFQTGKQEPALVAFSRYAFDMSKFS 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + R +E++ L+ + A +
Sbjct: 237 RARDVAYGIRERYLWELLWPAENDPLLARLPTEFRSEMHDRLLAPIYPFFFAAVAFAFLG 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L + +A + F++ + P A L ++L ++ +
Sbjct: 297 LARTTRQSRNFSMAGAVLVAFVVRLAGFALSVIANK---TPYVAGLQYLLLFVATGTCLW 353
Query: 356 L 356
L
Sbjct: 354 L 354
>gi|85374865|ref|YP_458927.1| permease [Erythrobacter litoralis HTCC2594]
gi|84787948|gb|ABC64130.1| predicted permease [Erythrobacter litoralis HTCC2594]
Length = 437
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/358 (12%), Positives = 115/358 (32%), Gaps = 7/358 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + + + A L+ + + + + + I + +P
Sbjct: 32 IDRYIFRLTIVPMMAVFVLAASLLLLDKMLRLFDFVAVEGG-PIGVVFKMLGALIPEYAS 90
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ + F L +SEL + RA+G+ +LL + + +L V ++ I
Sbjct: 91 LAIPLGLLLGILFAFRKLATSSELDVLRAVGMGYGRLLRVPYIITAILVAVNVALVFYIQ 150
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +++ ++ S
Sbjct: 151 PISRYYYEQLEYELRSGALGASIKVGEFTTLADRMALRIEESEDNGRNLKGIFARVSNDK 210
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ I R+ + LA + + ++ + + ++ L+ + +
Sbjct: 211 GQVLSISAREGSFLATTDSSDTIILRLTDGTIVQDTGNQTPRVLSFTRHDLPIDLPAIEQ 270
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQF---YFLIVIPLMLVAMTLIAASVSLE---F 298
+ + + S + + +E + L+ V M + ++L
Sbjct: 271 FRQRGDAEREYILPELLSIGWSDTESEAKRDASQASFNFRLVEVVMMWLLPLLALSLAIP 330
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + V I + + + G + P+ A P +L +L + +
Sbjct: 331 PKRSTSALGVFVSIVMVVSYHKVNQYGEDVAALGRVDPIVALWGPFVLFAALILWMFW 388
>gi|145641036|ref|ZP_01796617.1| predicted permease [Haemophilus influenzae R3021]
gi|145274197|gb|EDK14062.1| predicted permease [Haemophilus influenzae 22.4-21]
Length = 336
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/317 (14%), Positives = 110/317 (34%), Gaps = 10/317 (3%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
N L +P + Q ++P + ++ F L SE+ + RA G+
Sbjct: 6 AAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQR 65
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
L+ ++ S+L ++ + +++++ K N ++ +N
Sbjct: 66 ILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNN 125
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYG 217
+FI K +++ + K +I + +L + N LK +
Sbjct: 126 VVLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGT 185
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ D T + G+Q + + + + + S + + ++
Sbjct: 186 SVLPDFRITHFDEYQAYLGYQSAENTNDEVAELTLSQLIDLDSSSA-------KAELHWR 238
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
I + L + M LIA +S R + + + + + + + KS G +G L
Sbjct: 239 ITLILAVPLMALIAVPLSRVNPRQGRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAE 297
Query: 338 AAALIPVILTISLSILI 354
+ I L++++
Sbjct: 298 LLIPLVNIGFFLLAVVL 314
>gi|319955107|ref|YP_004166374.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
gi|319423767|gb|ADV50876.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
Length = 493
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/259 (11%), Positives = 79/259 (30%), Gaps = 1/259 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L M L+FV + + +P
Sbjct: 1 MRILDRYLLSRFLYNFFSSFAILM-LIFVFQTIWLFIDDLAGRGLDVMIILKFLFYIMPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++++++P L+ +I+ F ++ E +A GIS+ + + P ++ +LG+ N
Sbjct: 60 LMEKVLPLTVLLASILTFGSIAENYEFAAMKASGISLQRSMRPLIIFVCILGVVVFYFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + E+ +L + + + ++ + K + +
Sbjct: 120 SVIPASEQKIYNLRKNIGQVKPSTAIVEGAFSDLEGTNMNMKVDRKYGDNDRFLENVIIH 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D K ++ ++ + K+V + F
Sbjct: 180 RKSDNSINNTVIKAKTGELVSSEGSDILKLVLRDGHYYEDITKKKSTENRKYPFAKSSFE 239
Query: 242 EQFASRSFYEIIKKMSFSN 260
++ ++ +
Sbjct: 240 IYTINQDISKLDVNLEEDR 258
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 36/125 (28%), Gaps = 1/125 (0%)
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P + + + + I+ + + L + +
Sbjct: 338 YPEYQKSQILNAAKNTTTNILASIRSKKDELDKRYKIYNMHIVSLHKKFALGLSCIVLFF 397
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ A + R + + I Y I +++ K G + P+ A ++ +
Sbjct: 398 VGAPLGA-IIRKGGLGVPMVVAILLFLTYYFIGVFSENYAKDGNMSPIIGAWTSTLIMLP 456
Query: 350 LSILI 354
L + +
Sbjct: 457 LGVFL 461
>gi|227821476|ref|YP_002825446.1| putative permease protein [Sinorhizobium fredii NGR234]
gi|227340475|gb|ACP24693.1| putative permease protein [Sinorhizobium fredii NGR234]
Length = 390
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 12/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L LL + +V+ N + + SI LA +P
Sbjct: 1 MKLIERYIFRRATIMFLATLLPLLGIVWTTQALSNVNLVTD-SGQSIFAFLKLATLILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+PF L+ +N SEL + A G S ++ P + ++ L + + ++ N
Sbjct: 60 VVPIILPFALLIGVTQTLSVMNTDSELTVLNAAGSSRMSVIRPVIYLAVGLSVLSFVIDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + +I++ + + I+
Sbjct: 120 FVEPYSRVAVRKMIATAHADLLSSVVQENAFRRITDGLYVQVAARRSGGVLHGIFVAD-- 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGF 237
+ + ++++ + +K ++ I +S ++
Sbjct: 178 -SRNPNFELVYYAREGAVDEERSALVMKDGEVHRKLPDGGVSVIKFDSYAFDLTDMTRTA 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS-- 295
+ + + R + +I ++ S + + + + LIA VS
Sbjct: 237 GEATIRAKDRDLFYLIDP-DPNDPSYKRSPLAFTAELHRRLSEWTYPLLFGLIALVVSSD 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
R + ++ + + ++ + + + I L+P++
Sbjct: 296 ARSHREARVHPTIS-AVGAALVIRWMTFYAGNSAEDSIWFVPLMYLVPLMTGALA 349
>gi|297565137|ref|YP_003684109.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296849586|gb|ADH62601.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 337
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 91/354 (25%), Gaps = 20/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L +L + + DL + + N +S L R+P +
Sbjct: 2 LQRYLLRETLGLYTVGILIFVG-LLTTDLLSSLSGVLLRQNTPLSDVLQLVVYRLPYTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL + A GI LL P ++ +++ + +
Sbjct: 61 IALPLGLVFSLLVTLSRWIRQSELKAAYAGGIPPRSLLWPALLLGVVVSGVALWNEGWVK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + +
Sbjct: 121 PEAQARFDAVQYRIYYGSQLSGVLSDKVYAPEGLGVYYAQRIYPDREGARLEGVRVIEPG 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
AD +L+ + L P + Q S
Sbjct: 181 GA------IWSADRGRWLEKSWQLQNAYRVDPDGKVTQVSLQPLPFPARFVP-QSSSSGA 233
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ ++ + + L + + +A V L S
Sbjct: 234 LTLRLPDL--------HAAARVDPSVRFTLARTYANALGALVLAWLAIVVGLSLRESAWA 285
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I + + F Y + T F K + A +P ++ L+ ++
Sbjct: 286 FISI---VGLIFGYYVLWTASAQFAKFNVWGAY-GAWLPNLVYGLLAAWGTVRL 335
>gi|300703337|ref|YP_003744939.1| permease [Ralstonia solanacearum CFBP2957]
gi|299071000|emb|CBJ42309.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CFBP2957]
Length = 372
Score = 75.5 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/344 (10%), Positives = 104/344 (30%), Gaps = 13/344 (3%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
LL M+ VI + M S + +L + ++ +
Sbjct: 16 GAVFLVLLTFMLTTLVIRILG----MAANGEASPNDVLLLIGLATLGYLAILLCATLFIS 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 72 VLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGWPWANQQSALF 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+++ +++ ++ +F G + + +
Sbjct: 132 RDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEADKIGVALAKT 191
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
+ + + V L K Y+ +D + + +
Sbjct: 192 GEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVDAN------LP 245
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K + + + + I +PL+ + LIA ++ R + ++ +
Sbjct: 246 TKSRPTTELLSNPTPENLGELVWRIGLPLLALNFVLIAVPLAYVNPRLGRYTPMIF-AVL 304
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + +++ G + + A P+ L + ++L +
Sbjct: 305 IYLTYSNLLNLSQAWVAQGKMNAMLA-WWPIHLLAFVCAVLLFR 347
>gi|254453241|ref|ZP_05066678.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
gi|198267647|gb|EDY91917.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
Length = 372
Score = 75.1 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/359 (10%), Positives = 108/359 (30%), Gaps = 16/359 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
L +F L +++ ++ + +++ S L + +P +I+ ++P
Sbjct: 1 MLGQLLVFFGFFSLILVLIYWINRAVRLFDRLI-ADGQSAWVFLELTSLSLPSLIRIVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V + V ++ SEL + +A G S ++L P +V +++ + ++ N +
Sbjct: 60 LSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPVIVFGVIVAVLMSILTNILVPLST 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ I + + ++ ++ I+ ++ +
Sbjct: 120 ERLITRQAEIAQTMTARLLTPGEFLTPTDDVTFYIRELPPGGEMLDIFISESTSPTQRTT 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R V + + + + N+ M+
Sbjct: 180 YTASRAYLVRTENGPQLVMVDGLTQTLNLETSRLLTTRFEDFVYNVSALMNDDPVRKTSV 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFSRSNQ 303
S +++ + + + + + + I + L+ S + +
Sbjct: 240 NGLSTMALLRPSAETIADTNQTGDQLKLRGHDRIAQAALGFVAGLVGFSALVVGGFSRFG 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI----LILLQK 358
+ + + +L + S + AAL P + + +LL
Sbjct: 300 LWRNIIFAVGLVILLKLLEGTGTSIATTN------AALWPFVYLAGIGGVVISAMLLHI 352
>gi|226940338|ref|YP_002795412.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
gi|226715265|gb|ACO74403.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
Length = 363
Score = 75.1 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/356 (10%), Positives = 105/356 (29%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R + + ++ V + ++ ++ L A
Sbjct: 2 IFYRSVIRELTAVAFAVFSVLLAIMVVTQVVKLFDKAAS-GALPADAIVALIAFSTLGYF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + IVV + R E+ + G+S + + P + ++ L + V +
Sbjct: 61 GTLLSITLFISVIVVLTRIWRDHEMAVWLTSGLSPNRWIRPVLAFAVPLTLLIATVSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSI 182
+ G + + + + + + + +
Sbjct: 121 GPWAARKGSEYTDILRQQDEISAVAPGVFKESRDGSKVYFVENYSGEAGSATNLFVRSIE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ L Y+ D K
Sbjct: 181 NGKTSLVFAREGIVRTEPNGERYLYLTDGRRYEGEAGAADWKVVEFRKY-------KVKI 233
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
R+ + K S+ + + A + + + +P+ + + L+A +S RS
Sbjct: 234 NQNIRTTVDTRTKSVPSSMLWLANTPDARAELAWRVSLPIASLILALLAIPLSYYNPRSG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
Q + IF + Y ++ +++S+ G L + + + + +L+++++
Sbjct: 294 QT-FNLLIAIFVYQLYYNLMGVVQSWISKGELSVWSMVWLHLTMLGLFVLLMVMRR 348
>gi|15602061|ref|NP_245133.1| hypothetical protein PM0196 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720419|gb|AAK02280.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 368
Score = 75.1 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 108/310 (34%), Gaps = 16/310 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K LK+ L L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVLKSQLAILFILLLIFFCQQLVRVLGSAAS-GKVPADLVMSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQKILVRVVLILSLFTASIAAYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++++ K N ++ +N + +FI + K + ++ T
Sbjct: 121 TPWAIQKQSEILEGAKANPTMGALASGQFINTNNNEFVLFIDSIKDNTIHDVYVFQTRER 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLK-----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K ++ + +L + N LK +V + +
Sbjct: 181 GNLKPSVLVAEKGELQALPNGDQILKLENSQRVEGSSAFPDFRITHFEEYQAYLGYQDKN 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ F++++K H A+ + + + + L + M LIA +S
Sbjct: 241 NDEQETEELGFWDLMK----------THTPAAKAELNWRLSLILAVPLMALIAVPLSRVN 290
Query: 299 SRSNQPRIIV 308
R + ++
Sbjct: 291 PRQGRFAKVL 300
>gi|84500989|ref|ZP_00999224.1| Predicted permease [Oceanicola batsensis HTCC2597]
gi|84391056|gb|EAQ03474.1| Predicted permease [Oceanicola batsensis HTCC2597]
Length = 385
Score = 75.1 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/362 (10%), Positives = 101/362 (27%), Gaps = 13/362 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
RY ++ +F L + + ++ + + + + A +P +I+
Sbjct: 4 FDRYLLSQFMVLFGFFSLVLVSIYWINQAVRLFDALIG-DGQTAWVFLEFTALTLPNVIR 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V L+ SELV+ ++ G S W+L P + +++G+ ++ + +
Sbjct: 63 IVLPMATFAAVVYVTNRLSSESELVVMQSTGFSPWRLARPVLWFGVIVGLIMSVMSHFLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + ++ ++
Sbjct: 123 PVSISRLQERQDDLRQDLTARLLTEGSFLHPVAGITFYIRQIDADGTLRDVFFSDRRDAR 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVK--------LKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ R ++ + + T +I
Sbjct: 183 SPQTFTAARAYLIEGGGDDEGGAKLVMLDGLAQTLRAEDQRLFTTYFEDFTYDIGRLFGD 242
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--V 294
+ + + + L+ +A LI S +
Sbjct: 243 RGLPHVHIRHLPTLRLFAHPEQVATLTGSSPGQIAEEAHGRFAQALLCLAAALIGFSTLL 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ FSR + IV + + + L P+ + + I + ++
Sbjct: 303 TGGFSRFGVWQQIVVAIVLVMIVKSIEGVASDPVRRDPSLWPLI--YVAPLSGIGIGCVM 360
Query: 355 LL 356
L
Sbjct: 361 LW 362
>gi|114569777|ref|YP_756457.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
gi|114340239|gb|ABI65519.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
Length = 373
Score = 75.1 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/358 (13%), Positives = 118/358 (32%), Gaps = 13/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYFF L + + L + + + + + A +P + +
Sbjct: 6 RYFFNQLLWPFMTAIAAFAGLALLTQSLSNVDLVSGYSE-TALTFIKVTALALPHLTALL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V + L SELVI+ A G+S + LL+P + + + I + V +
Sbjct: 65 VPIALFVAVLSSLNRLTGDSELVIASAAGVSRFGLLSPIMRLGVYVLIANLAVNLLLQPV 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + + + I ++ + IL + D
Sbjct: 125 AYREMRRSLHTLRSDVAASLVTPGAFSQLGQGVTIYARERGRDGRMQDILIHDSRGTDGA 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S ++ ++ D ++ + ++ + + ++ +
Sbjct: 185 STYSAREGVVVRSGDRSAMVLIDGNLQQID---SAGELYYANFDRYEFDLGEFVGPADAM 241
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFS 299
+ + R +E++ + + + RA + ++ + PL +A LIAA+
Sbjct: 242 FFKESDRYLHELLWPSA-AEVARTGGPERAWAEAHYRLSAPLYNLAFALIAAACFLAGDH 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + +G L + M+S + A + + + ++ ++
Sbjct: 301 SRMGYGRRVMIAVGAGLTLRLVGFAMQS-ASADDAAMNVAQYLVPVFGMVGAVAVIYW 357
>gi|224586302|ref|YP_002640101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470830|gb|ACN48660.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 359
Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/344 (14%), Positives = 119/344 (34%), Gaps = 7/344 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ LK+ L L +++ F L I + + + L VP + Q I+P
Sbjct: 2 RETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMAQLILPLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ ++ L SE+ + A G+S L+ +V ++ GI + + K
Sbjct: 61 LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+++ + K N + Q +N +FI + + ++ + + +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSV 180
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
+ L + + + ++ + ++ + + +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG-----HQAVALD 235
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
N RA + ++ I + + M L+ +S+ R + + +
Sbjct: 236 PNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLP 294
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + I T +KS G G L PV ++ ++L+I +
Sbjct: 295 AMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 338
>gi|154148833|ref|YP_001406853.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
gi|153804842|gb|ABS51849.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
Length = 353
Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 109/356 (30%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +Y Y K + + ID+ + N + A
Sbjct: 1 MKIFQKYIGWTYFKYFVILFVALEFFYVGIDVLTNLKDFPQSANLG----LLYIAITAVA 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P + I+ FN+ R +E + A+G+ L+ P + ++ + + + N
Sbjct: 57 AITYTLPLSLVFALIIAKFNMIRNNEFISFFALGVPKNSLIIPPFLIALFITFGYISLNN 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I K ++ N + + +
Sbjct: 117 TIFVKAVKFQKNITNFASLNENADDLLLKYDGNFIYMSKLNPKEKTAKDVIFLETNGTNL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I+ K ++ L N + + + G + + + +
Sbjct: 177 ISKAISKKGVYNDKKWLFSDVNTTFLPQNLRLGEQGLTYKFEKNAQKLNNFDPNTIKNVY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + YE IK + I + + + +I PL M LI SR
Sbjct: 237 DSSQTYTIYEAIKSIKTFKNQGI-NVQTLKANLFVMIFFPLFAPFMVLILYYYLPVISRF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ ++ I+ ++ F +G+++P ++P+ + + + L+
Sbjct: 296 FNLALLSFAFFIITLCVWGILFVLVRFSLNGVIIPEIGIILPIFVMFCYACYLFLK 351
>gi|24213806|ref|NP_711287.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
str. 56601]
gi|24194638|gb|AAN48305.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
str. 56601]
Length = 631
Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 52/188 (27%), Gaps = 1/188 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L ++ V+ L ++ R + +
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGK-GVDPFRLLDYFGYLLANTL 189
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + + +
Sbjct: 190 PMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYL 249
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + +
Sbjct: 250 SPENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGV 309
Query: 184 IDKKNKII 191
++ +I
Sbjct: 310 QIREWEIF 317
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
++ + + + I +P+ + I+ + L RS + + +
Sbjct: 485 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 543
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 544 LMIYFTFFTLGSTISYNDKIPDWIGPWSANILIALLSINIMIKRTD 589
>gi|296272453|ref|YP_003655084.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
gi|296096627|gb|ADG92577.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
Length = 356
Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 122/357 (34%), Gaps = 5/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + +++ + L+ I ID + +++ N + +
Sbjct: 1 MRIITKYLLRKFIRNFVIVLISLQIFFVGIDFLQNFDEVPNSANLQLLYILYNSFF---- 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + I+ + +T+E+V S ++G+ Q+ P V SI+L + +
Sbjct: 57 TLTLTLPLSLVFGWIITIVIMVKTNEMVASFSLGVGNRQIFMPVVNVSIILIVLLIGFQM 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +++ K + ++ + + D
Sbjct: 117 TPLAYSYEYKEKILKNTYFTSSKSDIFVKYNDYFVYFKKLYPLQKYAEDIHIYKVVDDDI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K + + + K K + + K
Sbjct: 177 EEGIVAKKAYFQNNRWYVLDARITKKPKVIDWNNSKIEIHHEKFLYTLEGFKPKILDSVY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E +S S + I ++ N + + Y+ IV PL V + ++ S + SR
Sbjct: 237 ESTSSFSILDAITALTLLNDQ-EVNTSKIRASLYYEIVAPLYFVPLIILIFSYTSFNSRF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I + +++ + ++ F G++ P + L+P+ L ++ +++ ++
Sbjct: 296 FNIGKFTSFSIAATLVIWGVFFMLHKFSSGGVINPEISILLPIFLWYIITYILIKKQ 352
>gi|300690719|ref|YP_003751714.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
gi|299077779|emb|CBJ50417.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum PSI07]
Length = 372
Score = 75.1 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/344 (11%), Positives = 104/344 (30%), Gaps = 13/344 (3%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
LL M+ VI + M S + +L + ++ +
Sbjct: 16 GAVFLVLLTFMLTTLVIRILG----MAANGEASPNDVLLLIGLATLGYLAILLCATLFIS 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
++V + SE+V+ GIS+ + P + S+ + L+ +
Sbjct: 72 VLLVLTRWYKDSEMVVWFTAGISLTDFIRPVLRFSLPFVVLVALLALFGWPWANQQSALF 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+++ +++ ++ +F G + + +
Sbjct: 132 RDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAAQDKIGVALAKT 191
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
+ + + V L K Y+ +D + + +
Sbjct: 192 GEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQADAN------LP 245
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K + + + + I +PL+ + LIA ++ R + ++ +
Sbjct: 246 TKSRPTTELLANPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIF-AVL 304
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + +++ G + + A P+ L + ++L +
Sbjct: 305 IYLTYSNLLNLSQAWVAQGKMNAMLA-WWPIHLAAFVCAMLLFR 347
>gi|326561253|gb|EGE11612.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 437
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 104/368 (28%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 176 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSDDYHLYVGEMGANREFLKDVIIIQMHTA 235
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 355
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V I ++ +K G L PV L +++ + +
Sbjct: 356 ATPLSYVRPRQGRWYKLVP-AILIYVAGVLVVISLKDTITKGKLSPVI-YLAALLMMMVV 413
Query: 351 SILILLQK 358
++ + +
Sbjct: 414 AMYLNYHQ 421
>gi|89054305|ref|YP_509756.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
gi|88863854|gb|ABD54731.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
Length = 371
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/327 (13%), Positives = 106/327 (32%), Gaps = 7/327 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + +F L + + +V + +++ +I +A +P I+Q
Sbjct: 5 DRYILRQLVALFGFFSLVLVSVYWVNQAARLFDRLI-ADGQNIGVFLEFSALTLPWIVQL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P V + +F + SELV+ + G+S +LL P V LL I +++N +A
Sbjct: 64 ILPVSAFVATLYIFNRMISESELVVLQTAGLSALRLLRPVFVFGCLLAILLAVLVNILAP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + +D+ + ++ ++I L E + T
Sbjct: 124 TARGQFTQRQAEVQDDLTGRFLRAGEFIH-PAAGLTVYIREISELGEFRDLFLQDASTPG 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDGFQKFS 241
+ + ++ + V ++ + + + G
Sbjct: 183 VEVTYTANTALLVRSDTGPRLVMFDGVAQTLDLDTGRLSTISFSDFTYSVGTLGGTGARQ 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI-AASVSLEFSR 300
+++ + + + + L ++ + LI AAS+ L
Sbjct: 243 IDVRELPTPLLLRANQQIAGALNLPLSHLVFEGHDRLAQSLFVLFVPLIAAASLMLGSFS 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + + ++
Sbjct: 303 RFGVWKQILIAVALVLPMQIVRNASEA 329
>gi|319407069|emb|CBI80706.1| putative permease, YjgP/YjgQ family [Bartonella sp. 1-1C]
Length = 382
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 109/361 (30%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K LLGA+ + + + + N + ++ +P
Sbjct: 1 MRILELYILKRIFILFSAVLLGAVGISWTVQILARIN-FLTTNGQTFLTIVYFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IIPF +V + +N+ SEL + A GIS + P ++ ++L + + N
Sbjct: 60 VTSLIIPFALVVAITTILSTMNQDSELAVISASGISKNIVWKPILLLAVLASFTSFSITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA ++ + + Q I IG +
Sbjct: 120 FIAPHARLNMRQILASSHSDLISLFIREGSF-QELTKNLYIEIGERNANGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K A + + L + + + + +F
Sbjct: 179 RDPQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTF--SLSEFI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + +S+ N ++ + + + L + LI +++
Sbjct: 237 PNKKTPNIYPKDRPLSYLFNPNPNDSHYQRKPLQYRAELHRRFTECLYPIVFALIVIAIA 296
Query: 296 L-EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S I ++Y + ++ +IP+ +++ + ++
Sbjct: 297 GDAHSYRQARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYIIPIGISLLIFFML 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|326568200|gb|EGE18282.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC8]
Length = 442
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 62 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 120
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 121 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 180
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 181 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTA 240
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 241 EPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 300
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 301 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 360
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V + + +I++ + K G L PV L +++ + +
Sbjct: 361 ATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVI-YLAALLMMMVV 418
Query: 351 SILILLQK 358
++ + +
Sbjct: 419 AMYLNYHQ 426
>gi|17547135|ref|NP_520537.1| hypothetical protein RSc2416 [Ralstonia solanacearum GMI1000]
gi|17429437|emb|CAD16123.1| putative permease transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 372
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/350 (10%), Positives = 104/350 (29%), Gaps = 10/350 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + + I S + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAAN-GEASPNDVLLLIGLAALGYLAILLC 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++V + SE+V+ G+S+ + P + S+ + L+
Sbjct: 66 ATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSITIDKK 187
+ +++ +++ ++ +FI G + +
Sbjct: 126 QQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQDKIG 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + + V L K Y+ +D D + +
Sbjct: 186 VALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEF------DRYGVKVANKPPQ 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + K + + + + I +PL+ + LIA ++ R + +
Sbjct: 240 ADANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPM 299
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + ++ + +++ G + + A P+ L + +L +
Sbjct: 300 IF-AVLIYLTYSNLLNLSQAWVAQGKMSAMLA-WWPIHLAAFVCAGLLFR 347
>gi|145637643|ref|ZP_01793298.1| predicted permease [Haemophilus influenzae PittHH]
gi|145269166|gb|EDK09114.1| predicted permease [Haemophilus influenzae PittHH]
Length = 195
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKN--- 224
+ ++ +D T D+++ +I K A+ A D K L++V + I
Sbjct: 1 MTDDTKLDDIYIYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHL 60
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
S T + D S + S S + +SF ++ R E F+ I P+ +
Sbjct: 61 SETWETSLTPDKLGAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSV 119
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M L+A S RS + GI GF+ Y + I+ + + ALIP
Sbjct: 120 GVMMLLALSFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPS 179
Query: 345 ILTISLSILILLQKED 360
+L I + +L +K D
Sbjct: 180 LLFIVMIWWLLSRKRD 195
>gi|186476977|ref|YP_001858447.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
gi|184193436|gb|ACC71401.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
Length = 370
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 100/354 (28%), Gaps = 11/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ A G+S+ + + P V + + I +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLASGVSLARFIRPIGVFATPIIILIAFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + + + + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 NGKVNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVS 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGTPTLDLF--------RDPTRQNLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ I + + ++ +++S+ + G + + IL + + I
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVGLHILVALIVVFIFW 345
>gi|170692022|ref|ZP_02883186.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
gi|170143306|gb|EDT11470.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
Length = 365
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/356 (10%), Positives = 104/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ + + P + + + I +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTRFIKPIGMFATPIIILICFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + S+ + ++
Sbjct: 121 WPWSNQQSKMIRARFQQRDEVSLLAPGQFRESASSHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y+ D Q
Sbjct: 181 NGKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGT--------PTLTLLRNPTQVNLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA-ALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + ++ VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFALGLVILHVIVAAIVAFIFWLR 347
>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 441
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL+RY K ++ L+ + + ++ + + ++ + A L + +V
Sbjct: 1 MKILYRYILKEHIGPFLFSFITILFILTLQFVTRFFDRFAGK-DLGFIVIAELISLQVAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P LV ++ F NL +SE+ + RA G+S+++L+ P +V + LL N
Sbjct: 60 MVVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALLTGILERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L++ +
Sbjct: 120 IVLPEANYQAKVLLRDITRAKPTFGLTENAF 150
Score = 59.7 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 8/96 (8%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
+ + +F+ + + L+ A + + R I + + + +
Sbjct: 337 QSQGMYNKYMVEFHKKYALSFACIVFVLVGAPLGVLAKR-GGFGIGAGLSLLFFILYWAL 395
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + G+L P + + + + + + +++
Sbjct: 396 LIMGEKLSDRGLLDPGISMWLANAVMLLIGFIAMIR 431
>gi|326565140|gb|EGE15331.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 103P14B1]
gi|326572841|gb|EGE22826.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis CO72]
gi|326573713|gb|EGE23671.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis O35E]
Length = 437
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 176 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTA 235
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 355
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V + + +I++ + K G L PV L +++ + +
Sbjct: 356 ATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVI-YLAALLMMMVV 413
Query: 351 SILILLQK 358
++ + +
Sbjct: 414 AMYLNYHQ 421
>gi|288940756|ref|YP_003442996.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
gi|288896128|gb|ADC61964.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
Length = 380
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/347 (10%), Positives = 106/347 (30%), Gaps = 8/347 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ + L +L ++++ + ++ L + + ++ I ++P
Sbjct: 17 REAAQVFLAIVLVLVLILASLMFLRTLEEV-NLGGLGVDVVFRYLSLQIQRDISSLLPPA 75
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ +V R SEL+ +A G+ +L F++ ++ + T V +
Sbjct: 76 FFLAILVTLARFARDSELIAMQACGVGPPRLYRTFLLLAVPVAFVTGWVALDLKPHAAAG 135
Query: 131 GIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ QQ + + + ++IG +
Sbjct: 136 IQQIRLQQKEQAAQIAGLQAGRFYVEEQGKVVVYIGEIDQHKLLGDVFVLDRRGEKTRLV 195
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
+ + D + V Q R S I + ++ ++
Sbjct: 196 VSDSGRHRIEESTGDHL----VTLTQGHRFDGQAGSGAYLIGDFERYEIRLADAGSAPHA 251
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + + + + + PL ++ + ++A + R +
Sbjct: 252 FNKRATIPTPDLMHSDELADRVELEH-RLAAPLSILTLAVLAIPLVDPSPRQRTTG-RML 309
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F + + + +S+ +G+ +L + + L+LL
Sbjct: 310 LALLAYFSFFNLQRLAESWMAAGVTPAWLGSLWYQLAILVFVHLMLL 356
>gi|326559485|gb|EGE09908.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 7169]
gi|326566095|gb|EGE16252.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC1]
gi|326567798|gb|EGE17902.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 12P80B1]
gi|326572163|gb|EGE22159.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC7]
Length = 437
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 176 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTA 235
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 236 EPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 355
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V + + +I++ + K G L PV L +++ + +
Sbjct: 356 ATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVI-YLAALLMMMVV 413
Query: 351 SILILLQK 358
++ + +
Sbjct: 414 AMYLNYHQ 421
>gi|87121690|ref|ZP_01077577.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
gi|86162941|gb|EAQ64219.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
Length = 368
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/352 (9%), Positives = 104/352 (29%), Gaps = 17/352 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K L +T+ ++++ + E + ++ +P +Q IIP
Sbjct: 1 MAKEVLVSTMAVSFILLLIIASGRFVSYLGRAAE-GKMTFEFLFIILGFHIPSFLQIIIP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + L +E+ I A GIS +L + +++ + + +A + E
Sbjct: 60 LSFFLALLLAYGRLYIENEMSILFACGISKVKLTFYTLGIALIATLVNASISLWLAPTSE 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK---KILPENHIWEDFTSITID 185
+ + + +
Sbjct: 120 YQSQLAKAEQDQLTVFDFLQPGRFQGKGFNTTYVAEITPEEGWMKDVFISNTSKVEGKNI 179
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQKFSEQ 243
+ + + + K ++ +D T + + + + E
Sbjct: 180 PTQTLASHAEQIQLEGGDTYLVFKNGTRFEGVPGQLDYRITQFDTYAVLLDEKGELSIED 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+++ EI + + ++ + + I + +M+ + +I S+S R +
Sbjct: 240 PSTKPSSEIWRSDDLNEQAE----------WQWRISLVIMIPILAIIGTSLSQVNPRQGR 289
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + ++ ++ + G + IL ++ +
Sbjct: 290 -FFKMLPAILLMILYLGLLIWGRTSLEKGRIPSSFGLWWVHILFGLIAAFLF 340
>gi|54113843|gb|AAV29555.1| NT02FT0414 [synthetic construct]
Length = 360
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/349 (9%), Positives = 96/349 (27%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNIDIVNTFTSITLFIISIVSANLLIRLFQE-AYSQGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + ++ F +E+ ++ A GI+ Q++ + + L I T++ + +
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ + + + T
Sbjct: 121 NPLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K + + + + + S F
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + N ++ + + +F I + ++ +L+A ++ R N+
Sbjct: 239 YNHDRVDRLYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQNK 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + + + + + +P I ++
Sbjct: 299 YAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAV 346
>gi|316933708|ref|YP_004108690.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
gi|315601422|gb|ADU43957.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
Length = 388
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/363 (11%), Positives = 104/363 (28%), Gaps = 13/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY F+ L + + ++++ + + +I L VP+
Sbjct: 1 MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGID-LMTSQGQTIITFLGLTGLAVPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S +L PF ++++ ++
Sbjct: 60 LVLVIAPIALMIAVAHTLNRLAVDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVTVIGA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA G + + + + Q+ + ++ D
Sbjct: 120 YIAPDGLRRIARWDSEITADVLANVLQPGRFAQLEPGLTIRVRERQPGGILVGVFIDDAR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ + I + V +E M F +
Sbjct: 180 DPNERISIIADHGTVLKNEKGSFLVLEDGHLERFQAGKQEPTLVAFSRYAFDMSKFSRAR 239
Query: 242 EQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIPLML-----VAMTLIAASV 294
+ + + + ++ + ++ P+ VA +
Sbjct: 240 DVSYGIRERYLWELLFPPADDPLLARLPTEFRSEMHDRLLAPIYPFFFATVAFAFLGLPR 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ SR+ V + + I L + A + I++ + +
Sbjct: 300 TTRQSRNFSMIGAVLVAFVVRLAGFALSVIANKTPYVAGLQYLLLA-----VAIAICLWL 354
Query: 355 LLQ 357
+ +
Sbjct: 355 IKR 357
>gi|157736891|ref|YP_001489574.1| hypothetical protein Abu_0640 [Arcobacter butzleri RM4018]
gi|157698745|gb|ABV66905.1| conserved hypothetical membrane protein [Arcobacter butzleri
RM4018]
Length = 355
Score = 74.7 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/353 (13%), Positives = 112/353 (31%), Gaps = 5/353 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K YL + L+ + ID + + N + +
Sbjct: 1 MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIPASANLQLLYILYNSFFT--- 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + IV + +E V A+G + + P V+ SI L I + +
Sbjct: 58 -LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQM 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + K + Q+ + + K + +
Sbjct: 117 TPLAYSYEQKRKILNDEYFSNTKSDIFLKYNEYYVYFQKLLPLEKKAENIHIYKVKGDNL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K + D + K + + + K
Sbjct: 177 VETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFKPKILDNVY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + S + + + + + + T Y ++IP ++ + ++ S + SR
Sbjct: 237 ESKSDFSIMDAVSALILLKDQGM-NTQKIRTILYNQLIIPFFVIPILILVYSFASLNSRF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V++ IF +++ ++ SG ++P + L+ + + + SI
Sbjct: 296 FNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTVIPEISMLLTMFIWVIFSIYF 348
>gi|325282729|ref|YP_004255270.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314538|gb|ADY25653.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 347
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 97/354 (27%), Gaps = 11/354 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY LK + L ++L D+ + N + + +P ++
Sbjct: 4 LTRYILLDVLKWYVMGFLLFVVLQMT-DVLSLTAGAFLDYNATPQQALSTLLYNLPTLLN 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ + ++ F + SE+ A G+ L+ P + +L+G T +A
Sbjct: 63 RSLVLAVPFAVLLSFGRMQGDSEIKAMYAAGVRPLSLVWPLALPFLLVGALTFWNSGWVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
D + + + A P+ +
Sbjct: 123 PWANARWYDAWYDIYGMTPEPPTREMYAYSEGETLFYAGRVASGEEPQQALLSGVMVQRG 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + D+ L + G P + S ++ D +
Sbjct: 183 GE----VITADSGTWNTATQTWTLTGAWVTRPGETP--QPSAEPLTFVQKDTLAPPRPEA 236
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E+ +++ T + L + A + L
Sbjct: 237 DQLSRAELRAELADPTLQGA----ERRTLEHQLAGRTADSFTAVIFALAAGLLGLLMPGR 292
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
A + + Y T+ G L P A +P ++ I L+ + +
Sbjct: 293 AWAFAAVLLVVVVYYVPWTLGPQLAAGGALTPALVAWLPNLIFIVLAAALAWRL 346
>gi|315636068|ref|ZP_07891325.1| conserved hypothetical protein [Arcobacter butzleri JV22]
gi|315479637|gb|EFU70313.1| conserved hypothetical protein [Arcobacter butzleri JV22]
Length = 355
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/353 (13%), Positives = 112/353 (31%), Gaps = 5/353 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K YL + L+ + ID + + N + +
Sbjct: 1 MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIPASANLQLLYILYNSFFT--- 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + IV + +E V A+G + + P V+ SI L I + +
Sbjct: 58 -LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQM 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + K + Q+ + + K + +
Sbjct: 117 TPLAYSYEQKRKILNDEYFSNTKSDIFLKYNEYYVYFQKLLPLEKKAENIHIYKVKGDNL 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K + D + K + + + K
Sbjct: 177 VETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFKPKILDNVY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + S + + + + + + T Y ++IP ++ + ++ S + SR
Sbjct: 237 ESKSDFSIMDAVSALILLKDQGM-NTQKIRTILYNQLIIPFFVIPILILVYSFASLNSRF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V++ IF +++ ++ SG ++P + L+ + + + SI
Sbjct: 296 FNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTIIPEISMLLTMFIWMVFSIYF 348
>gi|225849792|ref|YP_002730026.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
gi|225646703|gb|ACO04889.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
Length = 356
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 119/361 (32%), Gaps = 14/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +K L L + + +L E+ + + I ++ ++P
Sbjct: 1 MRILDRYLYKKLTVYLLVVLPSFSFVAVLAELIEVLRKAKQ---LDIYYLSLYILYQLPE 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P ++ I++ +L + E+ GIS+ L + + L ++ +
Sbjct: 58 KVYYILPISAVIAFILLAKDLIESKEIYPILLNGISLKSLATKLFIFPLFLSFLQIINLE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + +K + K+ +++ + + + ++ + + +D
Sbjct: 118 LIMPTAKKEVEKVYSILKNRPPEEEKYLFAYNRWITLDSKSYMYFRFLDFNKREGKDLIF 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGF 237
I D+ + R + + I + ++ + + + + +
Sbjct: 178 IQFDENYNPVLRIEGNRFKIKGRSILIQNGKIIDLSDIFSFNYRRFKTFDFPVAVDIKNL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K + S ++ + + K Y Y + + ++++
Sbjct: 238 KKLVKVKKPVSILQLYRSAVIAEKFGYPAGYYWSKF-YSKLATVFSALILSIVVFPFLWS 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + S + + + S +SG + P L ++ + + + L +
Sbjct: 297 RKKDK-----LFIAFASIIVYWYGTAFIASMAESGAV-PYITVLFVDLVYLMVGLFFLSK 350
Query: 358 K 358
Sbjct: 351 L 351
>gi|319784423|ref|YP_004143899.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170311|gb|ADV13849.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 400
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/359 (12%), Positives = 115/359 (32%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + L+ + +V+ + + + + S +AA +P
Sbjct: 1 MKVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTD-SGQSALTFFEVAALILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF +V +N SEL + A G S W ++ P ++ ++ +F+ V N
Sbjct: 60 IIPIVVPFALVVAVAQTLSVMNSDSELAVVNAAGASRWTIVRPIMLLALAAAVFSFAVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + L+ + + + +I + + +G + S
Sbjct: 120 GIDPYARQKNRALVASSRADLLSLIIQEGTFRKI-DDGLFLQVGERLPNNRLGGIFVADS 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + V ++ + M F +
Sbjct: 179 REEGVNLVYYAKTGSIIERGGEKVLMMNDGVIHRKTLTGDLSVIRFTSYAFDMSAFMAAA 238
Query: 242 EQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + S ++K Y + + LIA +V+
Sbjct: 239 SAVTLLPKDQTTQYLLNPSANDKYYQQSPYEYRAEVNQRFSEWTYSMVFALIALAVA-GD 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLSILILL 356
+RS++ + L+ + K+ + I+ +++I ++
Sbjct: 298 ARSHREARVNPLITAITISLFVRWLGFFAASKADEIPQYAYMVYGVPIVASAVAIWFIV 356
>gi|241663806|ref|YP_002982166.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
gi|240865833|gb|ACS63494.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
Length = 372
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/344 (10%), Positives = 103/344 (29%), Gaps = 13/344 (3%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
LL M+ VI + M + + +L + ++ +
Sbjct: 16 GAVFLVLLTFMLTTLVIRILG----MAANGEANPNDVLLLIGLATLGYLAILLCATLFIS 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
++V + SE+V+ GIS+ + P + S+ + L+ +
Sbjct: 72 VLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFILLVALLALFGWPWANQQSALF 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+++ +++ ++ +F G + + +
Sbjct: 132 RDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDNGMKHARNVFVANAEQDKIGVAMAKT 191
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
+ + + L K Y+ +D D + ++ +
Sbjct: 192 GEFKTMPNGDRFIVLDKGRRYEGTPGKLDYRIVEF------DKYGVKVANKPPQADANLP 245
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K + + + I +PL+ + LIA ++ R + ++ +
Sbjct: 246 TKSRSTKDLLANPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIF-AVL 304
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + +++ G + A P+ L + ++L +
Sbjct: 305 IYLTYSNLLNLSQAWVSQGKMNVFMA-WWPIHLAAFICAVLLFR 347
>gi|270265132|ref|ZP_06193395.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
gi|270041066|gb|EFA14167.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
Length = 364
Score = 74.4 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L ++ + N + L A VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFCQNLVKVLGDAVD-GNVPTNLVLSLLALGVPKMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALITSAVAAVNVFWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +I + K N + + +FIG K N ++
Sbjct: 121 GPVASRYQDVVISEAKANPSIAGLAEGQFKPSQDGNAVLFIGNVKGSTFNDVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ +LK + T L ++ F +
Sbjct: 181 GNQRPSVVVA-------ERGKINQLKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAV 233
Query: 244 FASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R+ + + + A +F++ + + L + M L+ +S+ R
Sbjct: 234 VGHRAVAIDGNQAEQMSMQALWQSDDPDARAEFHWRLTLVLSVAIMALLVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + I + + + T ++S G G L P+ + ++++ +
Sbjct: 294 GRV-LSMLPAILLYLIFFLLQTSLRSNGGKGKLDPMIWLWVVNAAYFAIALAL 345
>gi|326574663|gb|EGE24599.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 101P30B1]
Length = 437
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/368 (12%), Positives = 107/368 (29%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ Q+ ++ + + +
Sbjct: 176 KPWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTA 235
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D I ++ + Q + +
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295
Query: 243 QFASRSFYEIIKKMSFS------------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S E + S + A + + + +P +++ L+
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELLSIIQGHSKRDNPQEAYAELGYRLSMPWLILLAILL 355
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + +V + + +I++ + K G L PV L +++ + +
Sbjct: 356 ATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVI-YLAALLMMMVV 413
Query: 351 SILILLQK 358
++ + +
Sbjct: 414 AMYLNYHQ 421
>gi|209519258|ref|ZP_03268060.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
gi|209500338|gb|EEA00392.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
Length = 365
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/356 (9%), Positives = 102/356 (28%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ + + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLARFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-PQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESPTTHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 GGKVNVVVSKNGHIETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGLP--------TMTLLRNPTNENLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA-ALIPVILTISLSILILLQ 357
+ I + + ++ +++++ + G + ++ VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGVGLVILHVIVLGIVAFIFWLR 347
>gi|332876989|ref|ZP_08444742.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332685097|gb|EGJ57941.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 491
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L L L +++ + +++ + +P
Sbjct: 1 MKILDRYILTQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIGKFLIYFIPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ F E +A GIS+ +++ P +V LL I T + N
Sbjct: 60 LIPIIMPLAVVISSIMTFGAFAENYEFAAMKASGISLMRVMLPLIVLMALLSIGTFFLAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+ + L + I
Sbjct: 120 NVIPVAYREVYTLRSNIAKVKPAMAISEGVFSNI 153
Score = 52.8 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + + +AA + F R + + + Y I MK+ ++ +
Sbjct: 378 DKFALTVACFVLFFVAAPLGA-FIRKGGIGLPLVVAMIVFLAYYFIGMFMKNIAENNTIN 436
Query: 336 PVAAALIPVILTISLSILI 354
P A IP ++ + + +
Sbjct: 437 PALAPWIPALILLPFGVYL 455
>gi|193212373|ref|YP_001998326.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
gi|193085850|gb|ACF11126.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
Length = 440
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY K +L T + + M + + + + ++ A + +
Sbjct: 1 MKIFDRYILKTHLGTFFFAFVTIMSVFILSFVTKFLERLIGK-GLDFGIIAEVVLLQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P LV ++ F L +SEL + RA GISI++L+ P ++ ++ L + N
Sbjct: 60 MVGFAVPMAVLVTTVMAFGVLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERYNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L D +
Sbjct: 120 VLMPEANYRANALFADITRLKPALGLDKNAF 150
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 9/99 (9%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ + + +++ + + ++ A + + +R A +F + +
Sbjct: 334 MQQHREDYRKYMIEYHKKYSLAFACLVFAMVGAPLGV-MARRGGFGAGAALSLFFFVLYW 392
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + G+L P + +P + + +L +
Sbjct: 393 VLMIGGEKIADQGLLSPAVSVWLPNAILTCAGLFMLYRL 431
>gi|167645643|ref|YP_001683306.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348073|gb|ABZ70808.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 409
Score = 74.4 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/360 (13%), Positives = 119/360 (33%), Gaps = 7/360 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + + L ++ +++ + + LAA VP
Sbjct: 14 FRLIDAYLLRLLVWPIVGCLGV-TVIALLLERVLRLLDVLSQSSARFGYVTSLAANLVPH 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V +V L+ SE+ A G S+ ++ PFV + L +F+++V
Sbjct: 73 YLGLALPVAFFVALFIVITKLSDGSEIDALLASGQSLTRIAAPFVSVGVFLMVFSLIVFG 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + G K + ++ ++
Sbjct: 133 YMQPYSRYAYRAVMHEAINAGWNGKLNGGSFIDEPKLLMTADDADAAGQQLKRVFIRRLD 192
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK-----VVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ +++ D L + V+ + + + T +P+
Sbjct: 193 VNGNEEVITAATADLRADHDAKSVTMLLRNGQRIGVDARGAYRTLMFDQLTTQVPLAGAA 252
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ R + +++ + Y + L L + L+A + L
Sbjct: 253 ALLRARGGDERELTLGELARQANTPNSVVPRATLLAELYGRLARALFLPFLPLLAFPLGL 312
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R N+ ++ G+ + + +S +SG +P+AA P ++ LS+ + +
Sbjct: 313 AAKRGNRTPGLIIAGVLL-LAFQHSLQLGQSLAESGKAMPLAAIGTPWLIFTGLSLWMFI 371
>gi|91977434|ref|YP_570093.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
gi|91683890|gb|ABE40192.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
Length = 388
Score = 74.0 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/364 (10%), Positives = 111/364 (30%), Gaps = 21/364 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y F+ L + + ++++ + + +I L VP++I
Sbjct: 4 IDSYIFRTTLTSFAVVMASLTGVIWITQALRGID-LMTSQGQTIVTFLGLTGLAVPVLIL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P ++ L SE+++ A G+S +L PFV +I + + L+ IA
Sbjct: 63 VIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFVYATIAVAVLVTLIGAYIA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWED 178
G + + + + + I ++ + ++ +
Sbjct: 123 PDGLRRIARWDSEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRDPN 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
I ++ D ++ + ++ + + + + + + ++ +
Sbjct: 183 DRVSIIADHGTVVKNSDGSFLVLEDGHLERFQAGKQEPALVAFSRYAFDMSKFSRARDVT 242
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-----VAMTLIAAS 293
+ K + + + + ++ P+ V +
Sbjct: 243 YGIREHYLWELIWPDPK----DPLLAQVPTQFRAEMHDRLLAPIYPFFFAAVTFAFLGMP 298
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ SR+ VA + + + + + A + I +S+
Sbjct: 299 RTTRQSRNFSMVGAVACAFVVRLAGFALSVVANHTPYIAGIQYLLLA-----VAIGVSLW 353
Query: 354 ILLQ 357
++ +
Sbjct: 354 LIRR 357
>gi|157147734|ref|YP_001455052.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
gi|157084939|gb|ABV14617.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
Length = 366
Score = 74.0 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/351 (13%), Positives = 121/351 (34%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ G+ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSRAVLVKAAMVLALFTGVVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L + + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + RA + ++ I + + M L+ +S+ R +
Sbjct: 236 HQAVALDPNDTDQMDMRTLWQTDTNRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + T +KS G G L PV ++ ++L++ +
Sbjct: 296 V-LSMLPAMLLYLLFFLLQTSLKSNGGKGKLDPVIWMWAVNLIYLALAVGL 345
>gi|260466946|ref|ZP_05813128.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
gi|259029243|gb|EEW30537.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
Length = 400
Score = 74.0 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 116/354 (32%), Gaps = 7/354 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + L+ + +V+ + + + + S +A+ +P II +
Sbjct: 6 RYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTD-SGQSALTFFEVASLILPSIIPIV 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF +V +N SEL + A G S W ++ P ++ ++ +F+ V N I
Sbjct: 65 VPFALVVAVAQTLSVMNSDSELAVVNASGASRWTIVRPIMLLALAASVFSFAVDNGIDPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ L+ + + + + +I + IG + + S
Sbjct: 125 ARQKNRALVAESRSDLLSLIIQEGTFRKI-EDGLFLQIGERLPDNKLGGIFVADSREEGV 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + + + + V ++ + M F + Q
Sbjct: 184 NLVYYAKTGSIIERGGEKVLMMNDGVIHRKTLTGDLSVIRFTSYAFDMSAFMSAANQVTL 243
Query: 247 RSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + S ++K+ + + + LIA +V+ +RS++
Sbjct: 244 LPKDQTTQYLLNPSANDKNYQQNPQEYRAEIDQRFSEWTYSMVFALIALAVA-GDARSHR 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV-AAALIPVILTISLSILILL 356
+ L+ + K+ + I+ +++I ++
Sbjct: 303 EARVNPLITAIAISLFVRWLGFFAASKADEIPQYGYMVYGVPIVASAVAIWFIV 356
>gi|313674336|ref|YP_004052332.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
gi|312941034|gb|ADR20224.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
Length = 549
Score = 74.0 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 64/231 (27%), Gaps = 5/231 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + + ++ L + ++ + + + + S A L A
Sbjct: 1 MKKI-DKLILRSFIGPFLITFFVVVFILLTQYMLKYFDDFVGK-DLGFSVFAELIAYFSI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ +++ F NL EL ++ GIS+ ++L P V + L
Sbjct: 59 NMTPIAFPLAVLLSSLMTFGNLGEHFELTAIKSAGISLVRVLRPLFVFVVCLSAVVYYSN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I L+ K + +
Sbjct: 119 NFIVPKANLEAYSLLYDIKQKKPSIDIKEGAFYGGIPGYSIKANKKYDDDKSLGDLIIYN 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK---VKLKKVVEYQYGRIPIDKNSTTL 228
+II A + I DK ++L Y + +
Sbjct: 179 HSDRKGNTEIILADSALMYTILGDKYLVMELFDGKSYTEEEANKPQEPSNY 229
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 11/164 (6%)
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
+ K + +D+ S +D R+ ++ K F+
Sbjct: 357 PDQLSKYDDQRTLKNTPKKLDRESIVEYDQNLIDRADSAFNSITRRTPSNLVDKPRFAKN 416
Query: 262 SNIFHNYRAETQFYF----------LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
N R E + + + + + M LI A + + V
Sbjct: 417 RLKGENRRIENRKFEINVYSIEANSKLSQAVACIVMFLIGAPLGAIIKK-GGLGFPVIVS 475
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + Y I T G++G + A + + + L
Sbjct: 476 ILFFIVSYVINTTGIKLGRAGDISNFWAVWASNFVLLPFGLFFL 519
>gi|260596296|ref|YP_003208867.1| lipopolysaccharide ABC transporter permease LptF [Cronobacter
turicensis z3032]
gi|260215473|emb|CBA27590.1| Lipopolysaccharide export system permease protein lptF [Cronobacter
turicensis z3032]
Length = 370
Score = 74.0 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/339 (13%), Positives = 118/339 (34%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLALLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++L GI + +
Sbjct: 61 QLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q ++ +FI + ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ +L+ + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYQAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + + A +F++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVALDPDDAEQMDMQTLWQADSKSARAEFHWRLTLVFAVIVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + T ++S G G L P+
Sbjct: 296 V-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWA 333
>gi|329850877|ref|ZP_08265722.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
gi|328841192|gb|EGF90763.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
Length = 385
Score = 74.0 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/355 (10%), Positives = 106/355 (29%), Gaps = 10/355 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+ + + + + E S + +PL+ I P
Sbjct: 1 MIVPVAGAVAALTAIALISQSLTQFELVVER-GQSAWTFIRVTLLSMPLLSGLIFPIALF 59
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
V +V L E + A G+S+ Q+ +P + + +F++ + +
Sbjct: 60 VGTLVALTRLQGEHEFTAAFASGMSLRQVSSPIIRIGVYFLLFSLASNLFLQPWSARSMR 119
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
+ + + K++ + + + I+ + +
Sbjct: 120 EELFKVKNDLVSTLVKEGEFSTSPSGLTIYVQRIDQNSLLRQIYIRIPATEGGADRTYVA 179
Query: 193 RKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
R+ + + L+ I + T++ I + + + R
Sbjct: 180 REGKITQVGTESLLILRNGSTQWVSGGELDHITFDETSIPISDYFASDDSLNFKESERYL 239
Query: 250 YEIIKKMSFSNKSNIFHNYRA----ETQFYFLIVIPLMLVAMTLIAASVSLEFSR-SNQP 304
+E+ + + + + + PL ++ L+A L
Sbjct: 240 HELFFPNLALPGDGGNYERKNVGKLMAEGHARLASPLYNLSFVLLAIMAVLGGGFSRGGY 299
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+A + +M++ G +L + L+P ++ I + + +L +++
Sbjct: 300 TQRIAIAAGVAVTARLLGVVMQTIGAEAAILNILQYLVP-LIPIIMCVRLLNKRD 353
>gi|124006213|ref|ZP_01691048.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
gi|123988137|gb|EAY27795.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
Length = 491
Score = 74.0 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 73/273 (26%), Gaps = 6/273 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + + + + L + + V L + ++ S A L
Sbjct: 1 MKKI-DKLVLQSFFGPFILTLSVLVFIFLVQQLLQYLDEFMGK-GLSYLVFAELVFYFSL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II ++P TL+ +++ F NL EL ++ GIS+ ++L P + + + +
Sbjct: 59 HIIPMVLPLATLLASLITFGNLGEHHELTAMKSSGISLIRVLTPLFMVVVCFAVVSFWFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I L+ + + +
Sbjct: 119 NSIVPKANLDAYSLLYDIRQTKPALDIKEGAFYGGIPNYSIKVNHKFPDGRTLKDVIIYD 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKV----KLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++I + K V ++ + S
Sbjct: 179 HSGRRGNKQVILADSGQMYTFDKGNFLAFELFKGVRYHELPTREGARPSEEFLKSKFKHS 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
FS + + + S N+ +
Sbjct: 239 KMIFSLESFNMDTTDKNLFKSNKIMRNVTELNK 271
Score = 39.7 bits (90), Expect = 0.81, Method: Composition-based stats.
Identities = 17/230 (7%), Positives = 53/230 (23%), Gaps = 9/230 (3%)
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
S K + N D ++ +I ++ + + E I
Sbjct: 233 SKFKHSKMIFSLESFNMDTTDKNLFKSNKIMRNVTELNKDIDSLTRKRKDLEARVLKYIS 292
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
R ++ + + ++ + I +
Sbjct: 293 PYYLYHMRDRTIDTLLNEGTKVVSLLKTWKKELDTTRYKKSQAVIYKDAFNRASNVKTVV 352
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + + + + + + M LI A + +
Sbjct: 353 VNRTKQWQQTIK--------DRNIFAIEKHRKYTNAVACIIMFLIGAPLGAIIKK-GGLG 403
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + I + Y + + + K ++ + + + L
Sbjct: 404 MPIIISIIFFIIFYLLSMTGEKWAKDSMVPVAYGMWGANFILFWVGLFFL 453
>gi|15888448|ref|NP_354129.1| hypothetical protein Atu1108 [Agrobacterium tumefaciens str. C58]
gi|15156140|gb|AAK86914.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 389
Score = 74.0 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 116/356 (32%), Gaps = 4/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ I + + N + + S+ LA +P
Sbjct: 1 MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDT-GQSMGSFMALATMILPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++PF ++ +F +N SEL I A G + P ++ + +L +F+ + N
Sbjct: 60 LIPVVLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I ++ + + + I + + + + D
Sbjct: 120 FIEPPARNSARQMVAAAYADLLSSVIEEKTFRTIQDGLYVQIAQRQGRILKGLFVADRRD 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + + + + S ++ +
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDGKVSIVKFLSYAFDLSTMSEKQDSEP 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFS 299
+ + +N S ++ + + + + LI+ +++
Sbjct: 240 SLSPGDASLGFLLSPDENNASYKRSPETFRSELHKRLSDWMFAFSFALISLAIAADSRSH 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +VA + + + + + +S +P+ A +P + + + +++
Sbjct: 300 REARLHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYA-VPGLSGAAAAFVLM 354
>gi|156935580|ref|YP_001439496.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
gi|156935598|ref|YP_001439514.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
gi|156533834|gb|ABU78660.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
gi|156533852|gb|ABU78678.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
Length = 370
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 7/339 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++L GI + +
Sbjct: 61 QLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q ++ +FI + N ++
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVNGSKFNDVFLAQLRPK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ +L+ + + ++ + ++ +
Sbjct: 181 GNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + ++ A +F++ + + ++ M L+ +S+ R +
Sbjct: 236 HQAVALDPDDAEQMDMKTLWQANSKSARAEFHWRLTLVFAVIVMALMVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + T ++S G G L P+
Sbjct: 296 V-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWA 333
>gi|292493019|ref|YP_003528458.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
gi|291581614|gb|ADE16071.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
Length = 374
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/346 (11%), Positives = 99/346 (28%), Gaps = 9/346 (2%)
Query: 1 MPG--ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I+ RY K L +++ I Q E L+
Sbjct: 4 MFKFRIVDRYILKELSLNVTAITLVLLLIFGGIRFIRFLGQATE-GKVPGETILALSTYE 62
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ ++P + I+V + SE+V+ A GIS LL + ++L I
Sbjct: 63 AIGALVLLLPLAAFLAVILVLGRMANDSEIVVLFACGISRGHLLRVVLAFGLVLAIGVGC 122
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + G L Q+ + + + Q + +
Sbjct: 123 ISLYLGPLASAEGYRLKQEAILAAETSGLVAGNFKKTKGGQWVFYAESLTEDRLGMRNVF 182
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+K + L Y+Y + D + +
Sbjct: 183 IQVREPTQKILFRSSRGRLQTDGITGDKHLILEEGYRYDLVGNDVG----IRISRFERHG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ ++ F K + + + + + + +P+ + + ++A ++
Sbjct: 239 ILVKKGGAQEFRIRHKTLPTLTLWEMG-APKDIAEVQWRVSMPIATLLLVMLAVPLARLE 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + + + + ++ I +++ + ++
Sbjct: 298 PRQGRYA-GLVPAVLVYVIYSNMLGISRNWVEHEVIPASLGLWWVH 342
>gi|218659050|ref|ZP_03514980.1| putative permease protein [Rhizobium etli IE4771]
Length = 272
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 88/244 (36%), Positives = 135/244 (55%), Gaps = 2/244 (0%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R+PL +QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T
Sbjct: 1 MRLPLNLQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLT 60
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI 175
+NP+A G++ + + W+ + IPW++ + + D+ IGA+ +
Sbjct: 61 TTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTK 120
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D I D ++I R+DA A + + +L VVE + G IP+ K S L +K D
Sbjct: 121 LVDAVLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQD 180
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + F+++ +++ + I ETQF L+ PL+LVAMTLIAA+VS
Sbjct: 181 FVQERLTAPETIGFFDLSNRIAAAKSFGI-STKALETQFNSLLSQPLLLVAMTLIAATVS 239
Query: 296 LEFS 299
L+FS
Sbjct: 240 LKFS 243
>gi|268678855|ref|YP_003303286.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
gi|268616886|gb|ACZ11251.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
Length = 353
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 118/357 (33%), Gaps = 5/357 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ Y K YLK L +G + +DL + + N I + A +
Sbjct: 1 MKLFETYIIKNYLKNFLVIFIGLDLFYVGVDLLTNYKNIPDSANLQI----LYALFQAMS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I ++P + IV +F + +T+EL+ A I+ L+ P +++L + + +
Sbjct: 57 AINYVLPLSIVFAMIVTYFAMLKTNELICMYASSITKKALVRPLFGVALVLSLLHIGLNY 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +L + + + + I Q ++ + E
Sbjct: 117 TEFAYAYEYGSNLKKYNRISNSSEDLFIKHDQQYVYFKKLDPLKQVAYDVTIFDVESADV 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I + KD K G + + K
Sbjct: 177 KRIIRAKMASFVKDVWWLKEVEITHKPSITSLDDKGFWIEKQETLQAMKNFKPKIMDNVY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + I + F + + T FY L ++ + L R
Sbjct: 237 QSDFSLSIRDGIDALRFFETQGVNTSKIKSTLFYQLFFPFFAPFLSVILFYNAPL-MGRY 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + F ++++ + ++ + +L+P A +P+++ +++ +++
Sbjct: 296 FNTALVASSFAFVTLLVWSSLFLLSRLAINSVLIPEIAIFLPIVMLAFIALYFYVKR 352
>gi|291060243|gb|ADD72978.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 365
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/363 (11%), Positives = 115/363 (31%), Gaps = 11/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+ Y + K L +L ++ FV ++ + Q + S + L +P +
Sbjct: 2 LFVYVCEVVFKHILVGVLCFFLVFFVNNVL-LFAQTLLTKHVSAADVVRLLLYSIPAALI 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ PF LV +++ L EL+ + +G+S L+ P + + +F + + +
Sbjct: 61 YVTPFAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVV 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + + + + ++ + I + S ++
Sbjct: 121 PASFIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSL 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ ++ +++ R + ++
Sbjct: 181 KVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPE 240
Query: 245 ASR-------SFYEIIKKM--SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + +++ K N H + +F P+ +V ++ +S
Sbjct: 241 YFMGLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLS 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
S + G+ + I + ++P A IP ++++
Sbjct: 301 -TLSNISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTALILS 359
Query: 356 LQK 358
++K
Sbjct: 360 MRK 362
>gi|311104770|ref|YP_003977623.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
gi|310759459|gb|ADP14908.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
Length = 367
Score = 73.6 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 6/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R +I+ + L + + N VLAA + I
Sbjct: 6 RSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAG-GNIGADVVVVLAALSTITALPTI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + + R SE+V+ A G+S+ L P + +I + + + A
Sbjct: 65 LAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVALAVAGLTLVAAPW 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + ++++ D K + S+ +F + P + + F +
Sbjct: 125 AYRQIGEYHERFEQRSDLSKVTAGQF-AESSGGNRVFFAEDPLTPSDELGNVFARENGPE 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
++ A + N L ++Y P ++ + S
Sbjct: 184 WLSVLTASKAHSETMPNGDRFLVLGEGHRYDLKPGTPEIRLVHFDKYGLRLESKSGGDPV 243
Query: 247 RSFYEIIKKMSFSNKSNIF---HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + + + + + +Q + I +PL + + L+A + R +
Sbjct: 244 AEARANAERSAKARTTPQLIADNTNSSWSQVMWRISLPLAALNLALLAIPLGAVNPRLGR 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ G+ G + +I + +++ +G L +L++ +L+++
Sbjct: 304 SGDLLIAGL-VGLLYMNLINLSRAWISNGKLSFGLGVWAIHAAVAALTVFLLMRR 357
>gi|208435366|ref|YP_002267032.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
gi|208433295|gb|ACI28166.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
Length = 355
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPSSFELGNNALNTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|15639869|ref|NP_219319.1| hypothetical protein TP0884 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026107|ref|YP_001933879.1| hypothetical protein TPASS_0884 [Treponema pallidum subsp. pallidum
SS14]
gi|3323201|gb|AAC26574.1| conserved hypothetical integral membrane protein [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018682|gb|ACD71300.1| hypothetical integral membrane protein [Treponema pallidum subsp.
pallidum SS14]
Length = 362
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/360 (11%), Positives = 113/360 (31%), Gaps = 11/360 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L +L ++ FV ++ + Q + S + L +P + +
Sbjct: 2 YVCEVVFKHILVGVLCFFLVFFVNNVL-LFAQTLLTKHVSAADVVRLLLYSIPAALIYVT 60
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF LV +++ L EL+ + +G+S L+ P + + +F + + + +
Sbjct: 61 PFAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPAS 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + + + + + ++ + I + S ++
Sbjct: 121 FIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSLKVV 180
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ ++ +++ R + ++
Sbjct: 181 SSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM 240
Query: 248 -------SFYEIIKKM--SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + +++ K N H + +F P+ +V ++ +S
Sbjct: 241 GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLS-TL 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ + I + ++P A IP ++++ ++K
Sbjct: 300 SNISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRK 359
>gi|317181181|dbj|BAJ58967.1| hypothetical protein HPF32_1385 [Helicobacter pylori F32]
Length = 355
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + K + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNTTHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P ++ ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFLVFLALSLWYFKKL 351
>gi|54113817|gb|AAV29542.1| NT02FT0415 [synthetic construct]
Length = 353
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/346 (15%), Positives = 114/346 (32%), Gaps = 19/346 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 6 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 64 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + K+ F+ I P N +
Sbjct: 124 PILQRQVDTNMVTYNTHDLWFKTPDG------------FMNIANIEPTNGKAYGIRKFMV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R I + + + + + K+ +
Sbjct: 172 QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPLPISV 231
Query: 245 ASRSFYEIIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A ++FS SN +F+ + PL L+ + L+A +S+ +
Sbjct: 232 AKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGST 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
RS+ + + G F GF + I I L P+ A P +
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTV 337
>gi|109948225|ref|YP_665453.1| hypothetical protein Hac_1758 [Helicobacter acinonychis str.
Sheeba]
gi|109715446|emb|CAK00454.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 355
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 111/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L P S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQVLKPIFFISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYDDDYVYFGKIDPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ N+ + + + +
Sbjct: 179 AEANEAFFEGKHWTLHDATIYSLPLNFDLGNNALSAMHLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + +++ A S +R
Sbjct: 239 PAVSIMDALFSLHAL-VRQKADTKKVRSFLYVFAILPFFVPFLSVFIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L+P L + +S+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPELGVLLPFFLFLIISLWYFKKL 351
>gi|213423382|ref|ZP_03356370.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 207
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 1/163 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+A GE++ + Q G + W + N I
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIER 165
>gi|108563840|ref|YP_628156.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
gi|107837613|gb|ABF85482.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
Length = 355
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDRTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + K + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLKFELGTNALNATRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351
>gi|110634108|ref|YP_674316.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
gi|110285092|gb|ABG63151.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
Length = 416
Score = 73.6 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/335 (13%), Positives = 106/335 (31%), Gaps = 20/335 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L L +++V+ + + + S + +A +P
Sbjct: 24 MKVIERYILRRTLAIFAASLAWLLVIVWTTQVLNRLD-LVTSSGQSAATFFTVAFLTLPS 82
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+PF+ + +N SELV+ A G ++ P ++ +I+ I + N
Sbjct: 83 VVPVIMPFVIGIAVAQTLATMNADSELVVISAAGSPRSTIIWPILIIAIIASIAAFAINN 142
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + ++ + IF+ + LP + F
Sbjct: 143 TLEPYSRQKMRTILANANADLITTVLREGSFRKVVD---GIFVQISERLPNGELGGIFVI 199
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKL--------KKVVEYQYGRIPIDKNSTTLNIPIK 233
+ D K+ +R + + + L ++V I D + L+
Sbjct: 200 DSRDPNLKLAYRAERGATVKRDGGNILVLLEGEVQRQVANGDVSVIRFDSYAFDLSQFTN 259
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+G + S N + + L + LI +
Sbjct: 260 GEGVPTLFPKDRYLSELLEPDPNDKFFAKNPQS---FRAELHTRFSEWLYPIVFALIGIA 316
Query: 294 V-----SLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
V S +R + + G+ + +
Sbjct: 317 VAGDARSFRETRLHPMVTTLTIGLLVRWAGFYASN 351
>gi|83945296|ref|ZP_00957645.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
HTCC2633]
gi|83851466|gb|EAP89322.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
HTCC2633]
Length = 375
Score = 73.2 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/330 (12%), Positives = 110/330 (33%), Gaps = 9/330 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F+ L L + L + + M E + + +P +I +
Sbjct: 6 RYTFRQALWPFLGAMAALTGLAVLTQSLSNLDLMAERGE-TALVLITITVLAMPQVIALL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + L SEL ++ A G+S +Q ++PF+ +I + + +++ + +
Sbjct: 65 LPIAVFLAVAIALNRLTSDSELTVAAAAGMSRFQRVSPFLRLAIYVVLVNLVINLFVQPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + + + ++ + Q F + +
Sbjct: 125 SFRLMRQQLFEIRTDLAASFMREGEFVPL--GDQVTFYVREISDDSVLNDVFIMDDRTGQ 182
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGFQKFSE 242
R+ A + L+ V Q + + +ST + + + +D
Sbjct: 183 SAAYAARRGRIAATDRGPVMLLEDGVRTQVDQSGVLTNLSFDSTKVELTLFVDNTASLFF 242
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-VAMTLIAASVSLEFSRS 301
+ + + E+++ ++ + R + ++ + PL + A+ R
Sbjct: 243 KESDKYLPELLRPT-PADIARAGGKGRLYAEGHYRLSAPLYNLAFALIALAAYMSGEHRR 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ S +L +++ +S
Sbjct: 302 IGYGRNLIIAGASAVVLRLTGFAIQAAAES 331
>gi|323525104|ref|YP_004227257.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
gi|323382106|gb|ADX54197.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
Length = 365
Score = 73.2 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/356 (10%), Positives = 104/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIVILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + S + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESASTHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y+ D Q
Sbjct: 181 NGKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGT--------PTLTLLRNPTNENLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA-ALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + ++ VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLR 347
>gi|327396302|dbj|BAK13724.1| inner membrane protein YjgP [Pantoea ananatis AJ13355]
Length = 308
Score = 73.2 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 94/293 (32%), Gaps = 6/293 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q I+P + ++ L SE+ + A G+S L+ +V + + + +
Sbjct: 1 MAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVI 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + Q K N + S+ +F+ K H++
Sbjct: 61 WLGPWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLR 120
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + ++ + ++ +
Sbjct: 121 PKGNARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQ 180
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + ++ I + ++ M L+ +S+ R
Sbjct: 181 ATLDPNDVDQ-----ATFATLLSNKTPEFRAELHWRITLVFAVLVMALMVVPLSVVNPRQ 235
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G G L P + I ++L+I++
Sbjct: 236 GRV-LSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLALAIVL 287
>gi|307638154|gb|ADN80604.1| Permease [Helicobacter pylori 908]
gi|325996753|gb|ADZ52158.1| Permease [Helicobacter pylori 2018]
gi|325998348|gb|ADZ50556.1| hypothetical protein hp2017_1432 [Helicobacter pylori 2017]
Length = 355
Score = 73.2 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 114/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|110598486|ref|ZP_01386757.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
gi|110339936|gb|EAT58440.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
Length = 435
Score = 73.2 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/423 (8%), Positives = 109/423 (25%), Gaps = 71/423 (16%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-------NYSISRGAVL 54
I+ RY K ++ L+ + + ++ + ++ I + A +
Sbjct: 1 MKIIDRYILKSHVGPFLFAFITILFVLILQFFASFADRFIGRGIAFSAIVELIILQSAWM 60
Query: 55 AATRVPLIIQQIIPFIT--------------------------LVVNIVVFFNLNRTSEL 88
P+ + + L V +++ + R + +
Sbjct: 61 VGLAAPMAVLIAVVMAFGSLTTNSEMTVLRASGISLYRLMFPVLCVALLLSLCVERFNNI 120
Query: 89 VISRAI-GISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
V+ A + + L + + + D ++ + +S
Sbjct: 121 VLPLANYHAKSLMVDIARAKPAFGLKENAFSTLVDGYSILVREADDQSKEIRGVVIYDRS 180
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+ + I + + +++ +
Sbjct: 181 RPNFTTMETAERGTIEFSGDFQYLVMTLLDGEIHQVKQPAHQVYRNLSFKKYRFVFESSG 240
Query: 208 LKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-------- 256
D L+I + SE+ + S + +++
Sbjct: 241 FGFARTSANRLRTGDSELSARELLSIGDEFQKRIAASEKRINLSLESMNRQIAGTGSGGS 300
Query: 257 -------------------------SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
S +N R ++ + L L+
Sbjct: 301 ADESRKKEIAAEGYVDRQLAALDAERQSISANRSMYNRYMAAYHKKYSLSLACFVFVLVG 360
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A + + +R + + + + ++ ++ + G+L P+ + + I+ ++
Sbjct: 361 APLGV-LARRGGFGVGAGMSLLFFVLYWMLMISGETIAERGLLDPMLSMWLGNIVISAIG 419
Query: 352 ILI 354
IL+
Sbjct: 420 ILL 422
>gi|308183601|ref|YP_003927728.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
gi|308065786|gb|ADO07678.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
Length = 355
Score = 73.2 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 116/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + + +
Sbjct: 179 AEAKEAFFKDKYWILHDTTIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|119899193|ref|YP_934406.1| hypothetical protein azo2903 [Azoarcus sp. BH72]
gi|119671606|emb|CAL95519.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
Length = 359
Score = 73.2 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 114/356 (32%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + +T + ++ I L + Q L +
Sbjct: 2 IFRRALLREFSQTAAAVFVALFAILVTIVLIRLLGQAAG-GGVPSDAVLALIGFGALTEM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V ++ R SE+V+ A G+ + + P + ++ + + +
Sbjct: 61 PVVLTLTLFVAVLLTLSRSYRDSEMVVWFASGVPLTAWIGPVLRFALPVVAVIAGMTLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + D Q+ + + + ++ F+ +
Sbjct: 121 SPWAHMKNAEYRERLESRDDTQRVAPGVFRESAGSRRVFFVEVGAGEDGRVRNVFVSDEN 180
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D+ + I + N V L+K Y + + ++ +
Sbjct: 181 GDRLSVIAAAEGYLKTDEEGNRFVVLEKGRRYDGKPGTPEYRVMSFERYSVQIEAKQAAA 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
Q + + + + R + + PL + + L+A +S R+
Sbjct: 241 QPQ-------RSRARPTEELLRSPDDRNLGELAGRVGTPLAALLLALLAIPLSFVNPRAG 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + I + + ITI +++ G L A L+P ++ + L L+ ++
Sbjct: 294 RTN-NLLVAILTYLIYSNAITIGQAWVAQGRLRFELAVLLPHLVVLGLLALMFYKR 348
>gi|188997596|ref|YP_001931847.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932663|gb|ACD67293.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 356
Score = 73.2 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 55/358 (15%), Positives = 138/358 (38%), Gaps = 14/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y +K L I+ +I+L EI + S + T++P
Sbjct: 1 MRILDAYIYKKLFVYLLIIFPSFSIVSALIELIEILKKAKT---IEFSTLTLYILTKLPE 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IIP +V + + + ++ E+ GIS+ + ++ SIL+ I V+ +
Sbjct: 58 NAYYIIPISLIVASFMFINDSIKSREIYPVILNGISLNYISIRIIIFSILVVILQVINLE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I L + K+ + +K I + ++ F+ + + +
Sbjct: 118 TVMPKTNQIYQTLYLKLKNQQEDEKVKGIAYKMWLKIGENQFLYFDFFDLNSKVGKKLIF 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
I+ DK+ I+R +A+ + DK+++ + + + L+I I ++
Sbjct: 178 ISFDKEFNPIYRLEAEDFKVSLDKIEVSNGRLIKINSLDNIIVEKFDKKILDINIDVENI 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K S E+ K++ +++ + +Y ++FY + + +T+
Sbjct: 238 KKIILAKKPVSISELY-KIASISQAYGYESYYFWSKFYEKLATVIAPFVLTVFILGFIWT 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ + + G + + +++ + + G + P + ++ + + +L
Sbjct: 297 NNK-----LYITSGFLATVFYWYGTSLISAVAEVGNI-PYFSIFFFDVVFLVIGFYML 348
>gi|121595375|ref|YP_987271.1| permease [Acidovorax sp. JS42]
gi|120607455|gb|ABM43195.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 396
Score = 73.2 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/352 (15%), Positives = 118/352 (33%), Gaps = 4/352 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + L L ++ + L + + + SI+ +LAA VP +
Sbjct: 9 LDRYAVRLFAVPLLTALATMLLATMLQRLLRLFD-IAASTGASIASVLLLAADLVPHYLG 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + + SEL A G SI ++ P+ + ++ + +F + + +
Sbjct: 68 LALPVAFTAAIFMAAARMGDDSELDAMLATGRSIARIAAPYFILALFVCVFNLYLFGRLQ 127
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ K + ++ I + I
Sbjct: 128 PLARYDYHVKMDAVLQTNWDAKIEENRFIDI-AHGFSFSADRVEDGGRRFIGVFMERRQN 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + K++LK + + P +TT + ++ F K +
Sbjct: 187 GIEEITTAVRGQLESNPDTRKMRLKLEDGLRVRQTPDGAIATTRFVDGYVEDFSKTRAPY 246
Query: 245 ASRSFYEIIKKMSFSNKSNIFH-NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + + + + +F+ + L+ + + L+A + + R +
Sbjct: 247 RDRGETATERTLPELWLAMCKTCDPDSAAEFHSRLARALLPLLLPLLALPLGMASKRGRR 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+V + + +T+ KS +SG L A P +L LS+ I
Sbjct: 307 TPGVVFASLALLLLNHTLQ-FGKSLAESGRLPAALAVWTPFLLFALLSLWIF 357
>gi|321222551|gb|EFX47623.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 335
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 106/311 (34%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V ++ GI + + K +++ + K N + Q +N +F
Sbjct: 70 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + N RA + ++ I +
Sbjct: 190 DFRITDFQNYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L PV
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAV 303
Query: 344 VILTISLSILI 354
++ ++L+I +
Sbjct: 304 NLIYLALAIGL 314
>gi|207091759|ref|ZP_03239546.1| hypothetical protein HpylHP_01146 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 355
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 117/354 (33%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + K + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNATRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351
>gi|317014913|gb|ADU82349.1| hypothetical protein HPGAM_07880 [Helicobacter pylori Gambia94/24]
Length = 355
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 112/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDRTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALFSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|33597808|ref|NP_885451.1| putative integral membrane protein [Bordetella parapertussis 12822]
gi|33574237|emb|CAE38569.1| putative integral membrane protein [Bordetella parapertussis]
Length = 370
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/318 (12%), Positives = 108/318 (33%), Gaps = 5/318 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + ++++ D K + + + F
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFF 161
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ P + + F + ++ +A + N L ++Y P
Sbjct: 162 A-EDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTP 220
Query: 224 NSTTLNIPIK---MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+N ++ +R+ E K + + + + +Q + + +
Sbjct: 221 EIRLVNFDQYGVRLESKAGEDPMAEARAAAERFSKARSTMQLVQDNTDSSWSQIMWRVAM 280
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + + L+A + R + ++ G+ G + +I + +++ SG +
Sbjct: 281 PLAALNLALLAIPLGAVNPRLGRSGDLLIAGL-VGLLYMNMINLSRAWISSGKISFSIGV 339
Query: 341 LIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 340 WAVHAVVALLAAYLLMRR 357
>gi|313205632|ref|YP_004044809.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
15868]
gi|312444948|gb|ADQ81303.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
15868]
gi|315022637|gb|EFT35662.1| hypothetical protein RAYM_03529 [Riemerella anatipestifer RA-YM]
gi|325334940|gb|ADZ11214.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
Length = 484
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/269 (13%), Positives = 78/269 (28%), Gaps = 1/269 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + L+ + V + Q S L
Sbjct: 1 MLKKLDRYIIKTFFGPFLFIFSVLFFIFLVNIIWIKLYQFTGK-GLSPFEIGKLLFYMGV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P L+ +I+ F EL +A GIS+++++ P + LL I +
Sbjct: 60 SVVNMVLPLTVLLSSIMTFGAFGERYELAAMKAAGISLFRIMRPLIFVVTLLSIILFIFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + + +++ ++ F EN
Sbjct: 120 NNVIPDFNRKAKNMLYNIAVTKPALNFTAGQFIGAIPGASVKFDKISGENGENLEGIIIH 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + ++ LK ++ Y + + + + KF
Sbjct: 180 KEVNGNNPQQTIIAPKGKFVPAQNRNYLKLILYKGYVYEDENTSYNYNERTKQPNKSIKF 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
A E++ K K + ++
Sbjct: 240 DSLVAHFDVSELVNKAIEEEKITENYQFQ 268
Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/346 (13%), Positives = 106/346 (30%), Gaps = 12/346 (3%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ LL ++ +F ++ N+ + Y+I+ A IP ++ +
Sbjct: 106 FVVTLLSIILFIFSNNVIPDFNRKAKNMLYNIA-VTKPALNFTAGQFIGAIPGASVKFDK 164
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ N ++I + + + Q G + + + D
Sbjct: 165 ISGENGENLEGIIIHKEVNGNNPQQTIIAPKGKFVPAQN--RNYLKLILYKGYVYEDENT 222
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ N ++ + D+ K + E I E++ T N I + +
Sbjct: 223 SYNYNERTKQPNKSIKFDSLVAHFDVSELVNKAIEEEKITENYQFQTYLDINGSIAQLEK 282
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
+ +++ Y + P K+D +K + + Y+ I +
Sbjct: 283 EQKTRFDNISNELVAQNNFYVNYLDKSKNKKATQPFKIDTLKKEKKIEILYNAYQKINTL 342
Query: 257 SFSNKSNI--------FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
KSN + ++ + + LI +S+ R V
Sbjct: 343 KEDKKSNKDPELYEMLKQRSKMIMYQQRILSFSITCIIFFLIGSSLG-SIIRKGGIGFPV 401
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + Y + +++ G L P AA +P ++ L I
Sbjct: 402 VIAIVIFIIFYVLNLTVENLSWKGKLNPYLAAWLPNLILAPLGIWF 447
>gi|33602710|ref|NP_890270.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
gi|33577152|emb|CAE35709.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
Length = 370
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/318 (12%), Positives = 108/318 (33%), Gaps = 5/318 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + ++++ D K + S +F
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRERFEQRSDLSKVTAGQF-AESGRGDRVF 160
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ P + + F + ++ +A + N L ++Y P
Sbjct: 161 FAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTP 220
Query: 224 NSTTLNIPIK---MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+N ++ +R+ E K + + + + +Q + + +
Sbjct: 221 EIRLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAM 280
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + + L+A + R + ++ G+ G + +I + +++ SG +
Sbjct: 281 PLAALNLALLAIPLGAVNPRLGRSGDLLIAGL-VGLLYMNMINLSRAWISSGKISFSIGV 339
Query: 341 LIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 340 WAVHAVVALLAAYLLMRR 357
>gi|319898731|ref|YP_004158824.1| permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
gi|319402695|emb|CBI76241.1| putative permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
Length = 385
Score = 72.8 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/359 (11%), Positives = 111/359 (30%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K ++GA+ + + + + N + ++ +P
Sbjct: 1 MRILELYILKRIFLLFSAVMIGAIGISWTVQILARIN-FLTTSGQTFLTVLHFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++PF ++ ++ +N+ SEL + A GI + P ++ +IL + + + N
Sbjct: 60 VTSLVMPFGLVIAITIILSTMNQDSELAVISASGIPKNIIWKPILLLAILTSLTSFSITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + ++ + + Q I IG
Sbjct: 120 FIAPNARLNMRQMLANTHSDLINLFIREGSF-QELTKNLYIEIGETNTNGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----MDGF 237
+K + + + L + + + +
Sbjct: 179 RDRQFGLFYYAKKGIIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFITN 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + ++ + +F+ + L + LIA +++ +
Sbjct: 239 KRTPNIYPKDRPLSYLSNPDPNDPHYQRKPLQYRAEFHRRLTECLYPIVFALIAVAIAGD 298
Query: 298 FSRSNQPRIIVAYGIF-SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
Q I + + ++Y + ++ + +IP+ ++I ++L
Sbjct: 299 ARSYRQTHISSTFSVISFSLLIYWLGYFFAKKTENNPVYIPLLYIIPIGISILTFFMLL 357
>gi|297623245|ref|YP_003704679.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297164425|gb|ADI14136.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 374
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 105/360 (29%), Gaps = 24/360 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L+ LL L + ++ + + A ++P I
Sbjct: 3 LDRYLLRECLPALLFSLLLYSGLAVT---SANFPRLQWIIGTPLWGMLGWLALQLPTAIV 59
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ F L +EL+ +A G+++ +L P + +L + + +
Sbjct: 60 QTLPIALLLAVLLTFGRLAAANELLAVQAGGVALRRLSAPMLALGLLAAGCALAMNQWVL 119
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + G + + ++ + +
Sbjct: 120 PRANVRVGALWWELTSGGSGLFRLERQSIPLGEFSLSFAATDRRTDDLFGVRLEAWRGRQ 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVK-----------------LKKVVEYQYGRIPIDKNSTT 227
+ + + + + + R P
Sbjct: 180 LSVVLAERARFVEGGLELYGYQNAVLDVGSLRDGAGTPEAQLQALVRLHNRAPSPDAPLR 239
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ--FYFLIVIPLMLV 285
+ +D + + + +N ++ R F+ + P +
Sbjct: 240 ITFAEDVDELITRFSGGGFEDTRSVTRTLRDANDPSLSAAERRAAAVLFHRKLAEPFANL 299
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ +A +++ +RS ++ + + Y ++T+ + ++G+L
Sbjct: 300 TLLAVALPLAVLHARSRSVAFGLSLAVTLAW--YLLLTLGQLLAQAGVLPVWLGLWFGNA 357
>gi|254780008|ref|YP_003058115.1| putative permease; putative membrane protein [Helicobacter pylori
B38]
gi|254001921|emb|CAX30174.1| Putative permease; putative membrane protein [Helicobacter pylori
B38]
Length = 355
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 116/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|15964907|ref|NP_385260.1| hypothetical protein SMc00584 [Sinorhizobium meliloti 1021]
gi|307300977|ref|ZP_07580746.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
gi|307317712|ref|ZP_07597150.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|15074086|emb|CAC45733.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306896474|gb|EFN27222.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|306903932|gb|EFN34518.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
Length = 390
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 111/354 (31%), Gaps = 10/354 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L LL M +V+ N + + SI LA +P
Sbjct: 1 MKLIERYIFRRATIMFLATLLPLMGIVWTTQALTNVNLVTD-SGQSIIAFLKLATLILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+PF ++ +N SEL + A G S ++ P + + L + + + N
Sbjct: 60 VVPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFAIDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + +I++ + I+
Sbjct: 120 FVEPYSRVAVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLQGIFVAD-- 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D ++++ + +K ++ + + + +
Sbjct: 178 -ARDPNFELVYYAREGAVDEERSALVMKDGEVHRKLPDGDVSIIKFDSYAFDLTDLTRMA 236
Query: 242 EQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ R+ + + +++ + + + LIA VS
Sbjct: 237 GEANIRAKDRDLFYLLDPDPDDEAYKRAPLAFTAELHRRFTEWTFPLLFGLIALVVS-SD 295
Query: 299 SRSNQPRII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+RS++ + + + + ++ + + + + L+P++
Sbjct: 296 ARSHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLVPLVTGALA 349
>gi|332674268|gb|AEE71085.1| conserved hypothetical protein [Helicobacter pylori 83]
Length = 355
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|150395989|ref|YP_001326456.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
gi|150027504|gb|ABR59621.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
Length = 390
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 111/354 (31%), Gaps = 10/354 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L LL M +V+ N + + SI LA +P
Sbjct: 1 MKLIERYIFRRATIMFLATLLPLMGIVWTTQALANVNLVTD-SGQSIIAFLKLATLILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+PF ++ +N SEL + A G S ++ P + + L + + + N
Sbjct: 60 VVPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFTIDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + +I++ + + I+
Sbjct: 120 FVEPYSRVSVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLHGIFVAD-- 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D ++++ + +K ++ + + + +
Sbjct: 178 -ARDPNFELVYYAREGAVDEGRSALVMKDGEVHRKLPDGDVSIIKFDSYAFDLTDLTRMT 236
Query: 242 EQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ R+ + + +++ + + + LIA V+
Sbjct: 237 GEANIRAKDRDLFYLLDPDPDDEAYKRAPRAFAAELHRRFTEWTFPLLFGLIAL-VASSD 295
Query: 299 SRSNQPRII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+RS++ + + + + ++ + + + + LIP+
Sbjct: 296 ARSHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLIPLATGALA 349
>gi|15612456|ref|NP_224109.1| hypothetical protein jhp1391 [Helicobacter pylori J99]
gi|4156011|gb|AAD06972.1| putative [Helicobacter pylori J99]
Length = 355
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|86749600|ref|YP_486096.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
gi|86572628|gb|ABD07185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
Length = 388
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/363 (12%), Positives = 107/363 (29%), Gaps = 13/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + Y F+ L + + ++++ + + +I L VP+
Sbjct: 1 MGSIDSYIFRTTLTSFAVVMASLTGVIWITQALRGID-LMTSQGQTIVTFLGLTGLAVPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I P ++ L SE+++ A G+S +L PFV +I + L+ +
Sbjct: 60 LILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLFRPFVYATIFVAALVTLIGS 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA G + + + + Q+ + ++ D
Sbjct: 120 YIAPDGLRRIARWDAEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D+ + I + V +E G M F +
Sbjct: 180 DPADRVSIIADHGTVLKNKDGSFLVLEDGHLERFQGGKQEPTLVAFSRYAFDMSKFSRAR 239
Query: 242 EQFASRSFYEIIKKM--SFSNKSNIFHNYRAETQFYFLIVIPLML-----VAMTLIAASV 294
+ + + + + + + ++ + ++ P+ V +
Sbjct: 240 DVAYGIREHYLWELIWPDPKDPLLAQLPTQFRSEMHDRLLAPIYPFFFAAVTFAFLGMPR 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ SR+ V + + + L + A + I+ S+ +
Sbjct: 300 TTRQSRNFSMIGAVLCAFVVRLAGFALSVVANHTPYIAGLQYLLLA-----VAIAASVWL 354
Query: 355 LLQ 357
+ +
Sbjct: 355 IRR 357
>gi|326626150|gb|EGE32495.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 335
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 106/311 (34%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V ++ GI + + K +++ + K N + Q +N +F
Sbjct: 70 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + N RA + ++ I +
Sbjct: 190 DFRITDFQNYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L PV
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAV 303
Query: 344 VILTISLSILI 354
++ ++L+I +
Sbjct: 304 NLIYLALAIGL 314
>gi|317011633|gb|ADU85380.1| putative permease; putative membrane protein [Helicobacter pylori
SouthAfrica7]
Length = 355
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTMRLETFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALFSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|158425949|ref|YP_001527241.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
gi|158332838|dbj|BAF90323.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
Length = 387
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 117/359 (32%), Gaps = 6/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L RY F + L +++ + + +I + + +P
Sbjct: 1 MGRLDRYIFSTSAVAFVGVTLVLTGMIWATQALRQLD-LVTSQGQTILAFLAITSLTLPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I P + LN SE+V+ A G+S W++L ++ ++L +F +
Sbjct: 60 LIMVIAPAALFIATSYTLLKLNGDSEIVVMAAAGMSPWRVLRSLMLLAVLASVFCSALSI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D + + + + + ++ ++ K + ++ +
Sbjct: 120 HIVPASLRSFRDQVSRVRADVVSFVAQPGRFVNLAPGLVFHVRDRAKNGVMSGVFINDAR 179
Query: 182 ITIDKKN-----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+I+ + ++ N + + G + + + G
Sbjct: 180 EKEVSTYVADRGQIVEADNGIFLVLENGSIHRRVPGAASNGSVVEFQRYAFDLSALTPGG 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ + + I + I R +++ + L +A IAA+
Sbjct: 240 SQSGADIRPNERSFAYISNPPKDDPYMIVQPGRFREEYHKRLSAGLYPLAFFAIAAAAMA 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + R + I I + V A + +LTI +S L+L
Sbjct: 300 RPRTTRESRGLALAAIVPIMTALQIANFAVAGQLRTAAWAVPAIYLIPLLTIIVSALVL 358
>gi|307728896|ref|YP_003906120.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
gi|307583431|gb|ADN56829.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
Length = 365
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/356 (10%), Positives = 104/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + + + + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 NGKLNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVRIESQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGT--------PTLTLLRNPTKENLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA-ALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + ++ VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLR 347
>gi|56698597|ref|YP_168974.1| hypothetical protein SPO3780 [Ruegeria pomeroyi DSS-3]
gi|56680334|gb|AAV97000.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
Length = 375
Score = 72.8 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/365 (12%), Positives = 110/365 (30%), Gaps = 18/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M YF + L +F + + ++ + +++ + A +P
Sbjct: 1 MSK-FDGYFLRQLLVLCGFFAFVLVGVFWISKAVSLFDRLIS-SGQTAMVALEFTALTLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ ++P + V LNR SE+ + A G S ++L P ++ ++ +
Sbjct: 59 TLVRTVMPMAAFCATVYVTNRLNRESEMTVMLATGSSPFRLARPVILFGLVCAAMLATIT 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + Q + +M + + KI + + + +
Sbjct: 119 LYLRPAAMLRLEARQAEVAGDMTAQLLNDGQFMHPVK---GVTVYIGKIDRDGTLNDVYL 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-------KNSTTLNIPIK 233
S + + + +++ L V + +I
Sbjct: 176 SDRRAPERVVTYTSSKAFLARSGEQIALVMVEGTALQMETGRRTLSTTVFRDFSYDISAL 235
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + + + + + VA+TLI S
Sbjct: 236 AKRDIERRQDIRGMPTLALATAFDGEGLAETYSRGEISEELQERLSWIGVSVAVTLIGFS 295
Query: 294 -VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVILTISL 350
+ L + L + + +F S G+ A P + I+L
Sbjct: 296 TLMLGTFSRFGLWPQLIAAFAGLIALEGMRSTATAFVGSHPGLWWVQHA---PALGGIAL 352
Query: 351 SILIL 355
SIL L
Sbjct: 353 SILFL 357
>gi|21673570|ref|NP_661635.1| hypothetical protein CT0740 [Chlorobium tepidum TLS]
gi|21646682|gb|AAM71977.1| membrane protein, putative [Chlorobium tepidum TLS]
Length = 452
Score = 72.4 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY K +L T + + M + + L + ++ + A +
Sbjct: 11 MKIFDRYILKEHLGTFFFAFVTIMFVFILTFLTQFLERLIGK-GLDFRIILEVVALQSAW 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P LV ++ F +L +SEL + RA GISI++L+ P ++ ++ L + N
Sbjct: 70 MVGLAVPMAVLVSTVMAFSSLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERFNN 129
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L D +
Sbjct: 130 VLMPEANYKANALFADITRMKPGLGIDKNAF 160
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ N Y +++ + V +I A + + +R A +F + +
Sbjct: 346 MRENRESFYNYMIEYHKKYSLAFACVVFAMIGAPLGV-MARHGGFGAGAALSLFFFVLYW 404
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + + G+LLP + +P ++ + ++ +
Sbjct: 405 VLLIGGEKIAERGLLLPAISVWLPNVVLAVTGLFMIYRL 443
>gi|308185268|ref|YP_003929401.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
gi|308061188|gb|ADO03084.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
Length = 355
Score = 72.4 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILNPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|218296646|ref|ZP_03497364.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218242959|gb|EED09492.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 368
Score = 72.4 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/369 (11%), Positives = 104/369 (28%), Gaps = 20/369 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+R+ K L LL + L I + + VP ++
Sbjct: 2 TLYRHLLKESLPVLFLTLLFLTAIFLFGFFYAGAR---WLEGVPIPKILRWLSYHVPGVL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P + ++VF L + G+ +W+ P + LL + + + +
Sbjct: 59 VQAFPIALVTTTVLVFGRLAAEGAQFALLSGGVPLWRAALPLLWLGALLSVAALYLQEYV 118
Query: 124 AT-SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + G + I + F E +
Sbjct: 119 VPEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGRSLYFEDFDMERKEMVGVRIVSFQ 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST--------------TL 228
R D +I + +V + + ++ L
Sbjct: 179 GEVGTFLFAERGTWDDRLITLRGYRFYRVDFREVPGLEGARDLLAQVRRVFRAVSRGEVL 238
Query: 229 NIPIKMDGFQKFSEQFASRSFYE--IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ + + ++ + SF + + + + + R + F + L L
Sbjct: 239 EVESDLSRARAIADYADTFSFGQNSLSQAWRKARDPFLPPLERDRARLEFHSKLALPLAN 298
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ L+ + ++ + + + Y + ++ G + P A +L
Sbjct: 299 LVLVLLAAAMALRYGRSTGLALGLSVVLALGYYGAFFLGRALAGVGAIPPELGAWGANLL 358
Query: 347 TISLSILIL 355
L + L
Sbjct: 359 FFLLGVRAL 367
>gi|326408706|gb|ADZ65771.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
gi|326538430|gb|ADZ86645.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
Length = 388
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/345 (11%), Positives = 107/345 (31%), Gaps = 9/345 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
L A+ + + + + + N + ++ +P I ++PF ++
Sbjct: 2 FFAVLGAAVGITWTVQVLQRIN-FLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAIT 60
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+N+ SELV+ A G ++ P ++ + + + + L+ N + +I
Sbjct: 61 QTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIA 120
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI------TIDKKNKI 190
+ + ++++ + ++ + I
Sbjct: 121 NASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLDLIYYAADGAI 180
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
D+ ++ N +V+ + V + I D + LN + ++
Sbjct: 181 ASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYL 240
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
++ + + + PL+ AM +A + R +
Sbjct: 241 LNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI-FAMIALAIAGDSRSHREARVSAS-FS 298
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + ++Y + L+P+++ + ++L
Sbjct: 299 AISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 343
>gi|297380647|gb|ADI35534.1| Hypothetical protein HPV225_1517 [Helicobacter pylori v225d]
gi|308064258|gb|ADO06145.1| hypothetical protein HPSAT_07215 [Helicobacter pylori Sat464]
Length = 355
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|295675785|ref|YP_003604309.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
gi|295435628|gb|ADG14798.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
Length = 365
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/356 (9%), Positives = 102/356 (28%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESPSTHRVFFIEKMSPDQGHVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 GGKVNVVVSKNGHVETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGLP--------TMTLLRNPTNENLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA-ALIPVILTISLSILILLQ 357
+ I + + ++ +++++ + G + ++ VI+ ++ + ++
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGIGLVILHVIVLGIVAFIFWMR 347
>gi|78186598|ref|YP_374641.1| hypothetical protein Plut_0723 [Chlorobium luteolum DSM 273]
gi|78166500|gb|ABB23598.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 442
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 1/164 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K + L M ++ + ++ L A +
Sbjct: 1 MKIIDRYILKSLVGPFFLAFLTIMFVLILQFFANFADRFIGR-GIDFMSLIELLALQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ F +L TSE+ + RA G+S+++L+ P V+ LL + N
Sbjct: 60 MVGLAAPMAVLIGVVMAFGSLTTTSEMTVFRASGLSLYRLMLPVVIVGFLLSLLVERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ + L+ + + + +
Sbjct: 120 VVQPQVKYKARSLMSDIAKAKPTFGITENAFSPLVDGYSILVQH 163
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
N R +++ + LI A + + +R I + + + +
Sbjct: 338 MNQMLYNRYMAEYHKKYALAFACFVFVLIGAPLGV-LARRGGFGIGAVLSLLFFVLYWVL 396
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + G+L P A + ++ + +
Sbjct: 397 MITGENMAEWGVLPPAVAIWMADVVIAVIGSTL 429
>gi|322834556|ref|YP_004214583.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
gi|321169757|gb|ADW75456.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
Length = 364
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 124/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L +++ F L + + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQFAILFILLLIFFCQKLVRVLGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++ +F + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTDSEITVMHACGLGKRSLVIAALVLALFTSVFAGVNAIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K +++ + K N + Q N +F+G+ K ++++
Sbjct: 121 SPWSSKHQDEVLAEAKANPSMAAMVEGQFQQAQNGNAVLFVGSVKGKEFHNVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+++ ++ + + ++ +Y + ++ + +
Sbjct: 181 GNQRPSVVVADKGHMLQRADGSQQVMLDKGTRYEGTALLRDFRVTDFTDYLAVIG----- 235
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + + A + + + + + + M L+ +S+ R +
Sbjct: 236 HQAVQLDPNQSDQMTMTQLWNSNEPEARAELNWRLTLIVSVFIMALLVVPLSVVNPRQGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + + T ++S G G L P+ +L +L++++
Sbjct: 296 V-LSMLPAILLYLIFFLLQTSLRSNGAKGKLDPMLWMWGTNLLYFALALVL 345
>gi|188528269|ref|YP_001910956.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
gi|188144509|gb|ACD48926.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
gi|308062762|gb|ADO04650.1| hypothetical protein HPCU_07550 [Helicobacter pylori Cuz20]
Length = 355
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|210135665|ref|YP_002302104.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
gi|210133633|gb|ACJ08624.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
Length = 355
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351
>gi|15639868|ref|NP_219318.1| hypothetical protein TP0883 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026106|ref|YP_001933878.1| hypothetical protein TPASS_0883 [Treponema pallidum subsp. pallidum
SS14]
gi|3323200|gb|AAC26573.1| conserved hypothetical integral membrane protein [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018681|gb|ACD71299.1| hypothetical integral membrane protein [Treponema pallidum subsp.
pallidum SS14]
Length = 365
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/342 (11%), Positives = 95/342 (27%), Gaps = 3/342 (0%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+L L+ A +++ ID+ Q Y S + +P + P L
Sbjct: 5 FLPIFFLVLVCASMILDAIDILVNLTQFIS-NGYRFSSLVKIWYVSIPHYVLLCCPLSVL 63
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
L +E + G+S + ++ P+ L I N + +
Sbjct: 64 FAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNSVVVVSQSKKD 123
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
++I + + + I + + K+I
Sbjct: 124 EIIARTVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMKNSNGTIQKLIE 183
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
A +K ++ + + + + ++ F S +I
Sbjct: 184 AHTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQDFLTKGMSIQKI 243
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ + ++ H +FY PL + M ++ ++ F + + + +
Sbjct: 244 KETLHTLKYASKPH-RELSIRFYKKFYFPLTMCIMLCLSF-LTGSFLKKRSLIMYIFCSV 301
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
Y + + P PV+ + L +
Sbjct: 302 VLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYV 343
>gi|317010128|gb|ADU80708.1| hypothetical protein HPIN_07620 [Helicobacter pylori India7]
Length = 355
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|217033870|ref|ZP_03439294.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
gi|216943633|gb|EEC23078.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
Length = 355
Score = 72.4 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 114/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMHQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|90419502|ref|ZP_01227412.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
gi|90336439|gb|EAS50180.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
Length = 392
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 114/356 (32%), Gaps = 8/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY FK L +++V+++ + + + S +A +P +
Sbjct: 3 ILERYIFKRAFVYAASSLTSLVLIVWIVQALSRIDVVKTSASA-ASNIFWIALMLLPDLF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ I +LN SE + A G S + P V +L G+ +L+ N +
Sbjct: 62 AGVLPFALLIGAIQALNSLNSDSERAVISAAGASQAVIARPIVALGLLGGLIMLLIGNVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I+ + + + +
Sbjct: 122 GPASMSAFQNGIRSINADMITLFLKPGRF--EQVQDGIVISIGDVNGATVESLVIADTRD 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-IKMDGFQKFSE 242
R+ + + + L ++ + + + ++
Sbjct: 180 PASDLTYFAREAKIIDEDASSLLLLFDGQLHRRNTADNSVSVIQFQTYAFDLAALRPATD 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY---FLIVIPLMLVAMTLIAASVSLEFS 299
R+ + + + ++ + R + + L +A L A V+ + S
Sbjct: 240 NSWVRASERSTAALIWPDPNDGLYQERPHSFTEELTDRMTNWLFAIAFVLWAIVVAGQPS 299
Query: 300 -RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ G+ G +L + S + G+ V + L+P+ + S+LI
Sbjct: 300 TNRQGTGPAMTVGLCGGLVLKAAGFVTLSQIEQGVFWVVISYLLPLAAIVLNSVLI 355
>gi|317182703|dbj|BAJ60487.1| hypothetical protein HPF57_1413 [Helicobacter pylori F57]
Length = 355
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|91782195|ref|YP_557401.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
gi|91686149|gb|ABE29349.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
LB400]
Length = 365
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/356 (10%), Positives = 105/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + ++ + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 NGKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGT--------PTLTLLRNPTDDNLAEFAWRAGLPLIALNLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + PV + VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLR 347
>gi|90423816|ref|YP_532186.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
gi|90105830|gb|ABD87867.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
Length = 388
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/359 (11%), Positives = 109/359 (30%), Gaps = 5/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + Y F+ L + L ++++ + + +I L VP+
Sbjct: 1 MGSIDSYIFRTTLTSFAVILASLTGVIWITQALRGID-LMTSQGQTILTFLGLTGMAVPV 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P ++ L SE+++ A G+S +L+ PF+ S+++ I +
Sbjct: 60 LVLVIAPIALMIAVAHTLNRLANDSEIIVMNAAGLSPLRLVRPFMFASVVVAILVGFISA 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A G + + + + Q+ + ++ D
Sbjct: 120 YVAPEGLRRINRWDSEITADILANILQPGRFSQLETNLTIRVRERQPGGVLVGVFIDDRR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
++ + I L + L+ ++ D M F +
Sbjct: 180 DPNERISIIAD-HGTVLKNNDGSFLVLEDGTLQRFESGKRDPALVAFGRYAFDMSKFSRA 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + ++ + + + ++ P+ + +
Sbjct: 239 RDVSYGIRERYLWELLWPEPDDALYARLPNQFRAEMHDRVLAPIYPFVFAALTFAFLGLP 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Q R G + + + S S A + + ++ S+ ++ +
Sbjct: 299 RTTRQSRNFSMAGAIAAVFVVRLAGFACSIVASSTPAVAIAQYLLLAAALAGSLWVIAR 357
>gi|110807999|ref|YP_691519.1| hypothetical protein SFV_4232 [Shigella flexneri 5 str. 8401]
gi|110617547|gb|ABF06214.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 345
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/331 (12%), Positives = 109/331 (32%), Gaps = 7/331 (2%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
+++ F L I + + + L VP + Q I+P + ++ L
Sbjct: 1 MLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY 59
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
SE+ + A G+S L+ ++ ++ I + + + +++ + K N
Sbjct: 60 TESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPG 119
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ Q +N +FI + ++ + + ++ L + +
Sbjct: 120 MAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRD 179
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
+ ++ + ++ + + +
Sbjct: 180 GSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLW 234
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
RA + + I + + M L+ +S+ R + + + + + + I T
Sbjct: 235 NTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQT 293
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILI 354
+KS G G L P ++ ++L+I++
Sbjct: 294 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 324
>gi|317178203|dbj|BAJ55992.1| hypothetical protein HPF16_1395 [Helicobacter pylori F16]
Length = 355
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|187922984|ref|YP_001894626.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|187714178|gb|ACD15402.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
Length = 365
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/356 (10%), Positives = 106/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + ++ + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSADQARVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 NGKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
++ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPSTTGT--------PTLTLLRNPTNDNLAEFAWRAGLPLIAINLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + PV + VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLR 347
>gi|313668051|ref|YP_004048335.1| hypothetical protein NLA_7130 [Neisseria lactamica ST-640]
gi|313005513|emb|CBN86949.1| conserved hypothetical integral membrane protein [Neisseria
lactamica 020-06]
Length = 392
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/352 (9%), Positives = 106/352 (30%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 23 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 82 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 142 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 200
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + N+ + ++ + K + + +
Sbjct: 201 QDKNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPK 260
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + L V L+L + + + +
Sbjct: 261 LIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPR----GG 316
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ ++G + L I+ ++++++L
Sbjct: 317 HTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILL 368
>gi|331674536|ref|ZP_08375296.1| putative permease [Escherichia coli TA280]
gi|331068630|gb|EGI40025.1| putative permease [Escherichia coli TA280]
Length = 356
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/345 (11%), Positives = 98/345 (28%), Gaps = 12/345 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ ++ + ++ + ++ +G + + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVPV 334
>gi|239815707|ref|YP_002944617.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
gi|239802284|gb|ACS19351.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
Length = 379
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/348 (11%), Positives = 113/348 (32%), Gaps = 7/348 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K ++ L+ + +V + L + + + S ++ A V + I+
Sbjct: 7 LRKELSRSFGATLVVLVTIVMTMMLIRTLG-LASKGSVNPSEVFLVMAYTVLGYMPTILS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + + R SE+VI + G + + P + + + ++
Sbjct: 66 LSLFIAIVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLVLIAVMALLGWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
I + Q++ D ++ + + S + FI ++ +
Sbjct: 126 SQTIGMRAQYEGRSDIERVTPGEFRESSGRMRVFFIDKDTPDGATATNVFIWAVERGLQI 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
R + N + L + +P + + + + + + S
Sbjct: 186 TTSARSGRIENVGNNRFLMLSNGQRLERPLLPTAGLKIS-----EFETYGTRAGGTSDFS 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + + + + I + L + L+A +VS R + +
Sbjct: 241 ADNTPARAKPTLQLLREPGDASHGELAWRIGMLLAAINFVLLALTVSSVNPRVGRSG-NL 299
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ +F+ + Y ++ + +S+ SG + L+ + + + LL
Sbjct: 300 LFALFAFVVYYNMLNLGQSWISSGRFSMGSFMLLLHGGVLLIGVAWLL 347
>gi|323144743|ref|ZP_08079320.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
gi|322415494|gb|EFY06251.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
Length = 336
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/323 (13%), Positives = 99/323 (30%), Gaps = 14/323 (4%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ + ++ + + LAA VP I ++P + ++ + SE+V+ R
Sbjct: 1 MIRLISRAA-VGTVPVDIITNLAAYAVPEIAMIMLPLTLFLACLITLGRICSDSEMVVMR 59
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+IG S ++ ++ + I T + L++Q ++N + +
Sbjct: 60 SIGFSPANVMTIAMILAFFTSIVTAFNCIYLVPWASNAKETLMKQTENNPQFLPIESGKF 119
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK----NKIIHRKDADLAIIYNDKVKL 208
+ I +K E +I F + I ++L
Sbjct: 120 SSMGGYNIYIENVEEKSDGEKNIANVFVMESPFANVGNSMTIADNGYLVHDENGVLWLEL 179
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K ++ N + G ++ S S + + ++ K I
Sbjct: 180 DKGSRFEVLTKDGTSNKAIFDKFRAPVAGSNSELQEDDSISSRDTFELLNSGEKRGIVEA 239
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + +T IA +S+ R + + I Y + ++
Sbjct: 240 -------QWRLSPIFAVFILTFIAIPLSMVNPRQGRFA-RLMPAILIYASYYMFLLSCRN 291
Query: 328 FGKSGILLPVAAALIPVILTISL 350
SG I ++ +
Sbjct: 292 MINSGSWPLYPGLFIVPVVFLFF 314
>gi|33593405|ref|NP_881049.1| putative integral membrane protein [Bordetella pertussis Tohama I]
gi|33572761|emb|CAE42691.1| putative integral membrane protein [Bordetella pertussis Tohama I]
gi|332382814|gb|AEE67661.1| putative integral membrane protein [Bordetella pertussis CS]
Length = 370
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/318 (12%), Positives = 107/318 (33%), Gaps = 5/318 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + + ++ D K + + + F
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVFF 161
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ P + + F + ++ +A + N L ++Y P
Sbjct: 162 A-EDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTP 220
Query: 224 NSTTLNIPIK---MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+N ++ +R+ E K + + + + +Q + + +
Sbjct: 221 EIRLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAM 280
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + + L+A + R + ++ G+ G + +I + +++ SG +
Sbjct: 281 PLAALNLALLAIPLGAVNPRLGRSGDLLIAGL-VGLLYMNMINLSRAWISSGKISFSIGV 339
Query: 341 LIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 340 WAVHAVVALLAAYLLMRR 357
>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
3519-10]
gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
Length = 484
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 1/255 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +L L+ + V + Q S L A
Sbjct: 1 MIKKLDGYVIKSFLGPFLFIFSVLFFIFVVNIIWIQLAQFTGK-GLSYWEILKLLAYLSV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q ++P L+ +I+ F + EL +A GIS+ +++ P V SI L F L
Sbjct: 60 KVVQLVLPLTILLSSIMTFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + ++ +++ ++Q F EN
Sbjct: 120 NNVIPDFQRKAKNMLYNIAATKPALNFSPGQFIQQIPGYSVKFDEITGENGENLTGVFIH 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +N+ + + +++ LK V+ + N + D KF
Sbjct: 180 KMANSYENQQSIVAEKGKFVQADNRNYLKLVLYNGHIFEENIGNVDYNQRIKQPDQAIKF 239
Query: 241 SEQFASRSFYEIIKK 255
+ + EII K
Sbjct: 240 DTLVSHFNISEIINK 254
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 1/109 (0%)
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
E+ + K +N R + + + LI +S+ R + V
Sbjct: 343 LKELNEGKKPQIKDLHSYNSRIIMYQQRIFAYSMTCLIFFLIGSSLG-SIIRKGGLGLPV 401
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I + Y + +++ +G + P A+ +P ++ + +
Sbjct: 402 VIAIMVFIIFYILNLTVENMAWAGEMNPYLASWLPNMVLFPFGAWLTYK 450
>gi|153877760|ref|ZP_02004356.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
gi|152065776|gb|EDN65644.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
Length = 215
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/214 (10%), Positives = 62/214 (28%), Gaps = 1/214 (0%)
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ I + + + + + + A
Sbjct: 1 MVFSTRYGFWARDGHDFINVRTIFPDGGFGTISLYEFDDEQRLQALTYARTAYYQEGKWL 60
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
++K + + T + +K + + S + + + ++
Sbjct: 61 LKGVEKNILSANQVTRQFLENVTWDAILKPELIKMVVISPYKLSSLGLYNYIEYRQQNGQ 120
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ E + + PL+ V M L+A R+ + G G + +
Sbjct: 121 R-TAQYELALWTRLSYPLVGVTMILLAIPFVFGSLRTVSIGQRILVGALLGVGFHMLNQA 179
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G L P +A +P + + L+I+++
Sbjct: 180 VSNMGLVYGLHPAISAFLPPLAFLMLAIVMMRHL 213
>gi|218296306|ref|ZP_03497062.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218243378|gb|EED09908.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 336
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 94/335 (28%), Gaps = 19/335 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L + M L DL + + +L R+P +
Sbjct: 2 LGRYVLKEVLLPYGVGVFLFMAL-LTFDLLSSLSGVFLSRGAGAEAILLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P ++ S+L+ + + + +
Sbjct: 61 LALPLGLVFAILVGLSRLIRHSELKAAYAAGVPPLALLKPLLLLSLLVALVNLYNLAEVR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + Q + + +
Sbjct: 121 PRALEAYDRALARLLYGEGGPSGVLRRQVYALEGQGVYYAEEVVPEVGQNRLYGLRVVDE 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ D L++ + I + + +
Sbjct: 181 KGRIYSAKEGVWDREGWQFLGYVLEEGKLKPFQGI------LPFPALFRPKESLGSKDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S + E+ ++ + + + L + AA++ L +
Sbjct: 235 DSSTLEELWQRARVEPAA--------RFALHRRLADALGGFFLGFAAAALGLSLREAAWA 286
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+ V + F Y + T+ + + P+ A
Sbjct: 287 FLGV---VLLIFGYYVLWTLSAQLAR-YDVSPLLA 317
>gi|296162276|ref|ZP_06845070.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
gi|295887430|gb|EFG67254.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
Length = 365
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/356 (10%), Positives = 105/356 (29%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + ++ + ++
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + V L+ Y D Q
Sbjct: 181 NGKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + +PL+ + + L+A ++ + R +
Sbjct: 241 TPTTTGT--------PTLTLLRNPTNDNLAEFAWRAGLPLIALNLMLLAIPLAHQNPRRS 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLSILILLQ 357
+ I + + ++ +++S+ + G + PV + VI+ ++ + L+
Sbjct: 293 RT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLR 347
>gi|15646107|ref|NP_208289.1| hypothetical protein HP1498 [Helicobacter pylori 26695]
gi|2314682|gb|AAD08544.1| predicted coding region HP1498 [Helicobacter pylori 26695]
Length = 355
Score = 72.0 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351
>gi|315585885|gb|ADU40266.1| conserved hypothetical protein [Helicobacter pylori 35A]
Length = 355
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 116/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ + V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTVVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|319405494|emb|CBI79113.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
Length = 382
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 107/361 (29%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K +LGA+ + + + + N + ++ +P
Sbjct: 1 MRILELYILKRIFILFSAVMLGAIGISWTVQILARIN-FLTTSGQTFLTILYFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IPF ++ ++ +N+ +EL + A GIS + P ++ +IL + + N
Sbjct: 60 VTSLVIPFALVIAITIILSTMNQDTELAVISASGISKNIVWKPILLLAILASFTSFSITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA ++ + + Q I IG +
Sbjct: 120 FIAPHARLNMRQMLANAHSDLISLFIREGSF-QELAKNLYIEIGERNANGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K A + + + L + + + + +F
Sbjct: 179 RDHQLGLFYYAAKGAIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSYTF--SLSEFI 236
Query: 242 EQFASRSFYEIIKKMSFS------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + +S+ + ++ +F+ L + LIA +
Sbjct: 237 PNKKTPNIYPKDRPLSYLSNPSPNDPHYQRKPFQYRAEFHRRFTECLYPIVFALIAIVIV 296
Query: 296 LEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S I ++Y + ++ +IP+ + ++
Sbjct: 297 GNARSYRQAHIFETFSTITFSLLIYWLGYFFAQKAENNPSYIPLLYIIPIGICSLTFFML 356
Query: 355 L 355
+
Sbjct: 357 I 357
>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 443
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 1/149 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + + + + L+ + + + + L A + ++
Sbjct: 3 ILDRYILKKQIAPFFFAFITIVALLQLQFFSTFAERFIGK-GITFVAIVELLALQSAWMV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P LV ++ F L TSE+ + RA GIS+++++ P +V S+LL N +
Sbjct: 62 SFALPMAVLVAVVMSFGTLTTTSEMTVCRASGISLYRVMVPVIVVSLLLSFTVERFNNVL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
L+ + + +
Sbjct: 122 LPQANYQAKSLMAEIARSKPAFGLTEQAF 150
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
R ++ + L V L+ A + + +R + A + + + ++ +
Sbjct: 344 YNRYMAAYHKKYSLSLACVVFVLVGAPLGV-LARRGGFGVGAAISLLFFVLYWMLMISGE 402
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ G+L P+ A + + + + ++ +
Sbjct: 403 KMAERGVLDPMIAMWMADGVMALIGVGLVTKL 434
>gi|217031844|ref|ZP_03437347.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
gi|298735532|ref|YP_003728053.1| hypothetical protein HPB8_32 [Helicobacter pylori B8]
gi|216946496|gb|EEC25098.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
gi|298354717|emb|CBI65589.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 355
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 114/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDEINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L +SLS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLSLSLWYFKKL 351
>gi|82523966|emb|CAI78777.1| predicted permease YjgP/YjgQ family [uncultured epsilon
proteobacterium]
Length = 356
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 111/348 (31%), Gaps = 6/348 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +Y+K L L+ M+ + D E + N + + I
Sbjct: 4 FKYISFHYIKYFLIILIALMLFLVGFDYMENAGDLSSSANL----VLIYLVYKAFFAIDM 59
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + + L R++ LV ++G S +L PFVV S + + + + +
Sbjct: 60 LLPLSLVFAMVSTKIFLIRSNALVSFYSLGYSRVDVLRPFVVVSTSIIVIFISLHALPSF 119
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTSITI 184
S + I++ + + + + ++ + + +
Sbjct: 120 SRADEYSNNIRKNAEYLSPTRDLFFTYKDQYVYFSKMLPLQERAEGIRVFSVINNSLQEV 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++R D + K + G + + + E
Sbjct: 180 LVAKSAVYRDDYWHIKQADIIRKPIDLSFESSGIRVTSVEDMKILEGFRPKILDQVYEGK 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + + I + F K+ + Y + V P + + +I R
Sbjct: 240 VNFTITDAIDAI-FLLKNQNISVSTIKGALYKIFVYPFFVPCLVIIIFFFVPISPRFLNV 298
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + +++ I+ ++ + + + P+++ +S+
Sbjct: 299 SLFSFGAILATLLVWGILFMLIELSNNKTIPSEIGVVAPIVILFLISM 346
>gi|323978945|gb|EGB74025.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
Length = 356
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 98/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSVQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|299065988|emb|CBJ37169.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CMR15]
Length = 372
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/344 (11%), Positives = 104/344 (30%), Gaps = 13/344 (3%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
LL M+ VI + M S + +L + ++ +
Sbjct: 16 GAVFLVLLTFMLTTLVIRILG----MAANGEASPNDVLLLIGLAALGYLAILLCATLFIS 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 72 VLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQQSALF 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+++ +++ ++ +F G + + +
Sbjct: 132 RDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQDKIGVALAKT 191
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
+ + V L K Y+ +D D + ++ +
Sbjct: 192 GEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEF------DRYGVKVANKPPQADANLP 245
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K + + + + I +PL+ + LIA ++ R + ++ +
Sbjct: 246 TKSRPTTELLSNPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIF-AVL 304
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + +++ G + + A P+ L + +L +
Sbjct: 305 IYLTYSNLLNLSQAWVAQGKMSAMLA-WWPIHLAAFVCAALLFR 347
>gi|116330556|ref|YP_800274.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
gi|116124245|gb|ABJ75516.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
Length = 606
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 1/188 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY L L L ++ V+ L ++ R + +
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGK-GVDPLRLLDYFGYLLANTL 164
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + + +
Sbjct: 165 PMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYL 224
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + +
Sbjct: 225 SPENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGV 284
Query: 184 IDKKNKII 191
++ +I
Sbjct: 285 QIREWEIF 292
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
++ + + + I +P+ + I+ + L RS + + +
Sbjct: 460 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 518
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 519 LMIYFTFFTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKRTD 564
>gi|88803032|ref|ZP_01118559.1| putative permease [Polaribacter irgensii 23-P]
gi|88781890|gb|EAR13068.1| putative permease [Polaribacter irgensii 23-P]
Length = 482
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 74/273 (27%), Gaps = 7/273 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L L L + ++ + L + + S S
Sbjct: 1 MKILDKYILKTFLGPFLATFLIVLFVLVMQLLWQTFENIAGK-GISFSFILKFLYYTSLS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q +P L+ +I+ +L E +++ GIS+ +L+ P + ++LL L +N
Sbjct: 60 IVPQAMPIAVLLSSIMALGSLGENYEFAAAKSSGISLQRLVRPLIFLTLLLSGINFLFLN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I +L K + K + ++
Sbjct: 120 NIFPYAILKQQNLYYNIKKKKPALALIPGSFNSDLPG------YQIKFDEKYGEEKNLLK 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + +
Sbjct: 174 NVLIYDLSSSKGNQKIITAKRGKIISEEGSRYMTFILYDGYYYEDHTKTTRSYSKKKNMP 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
A+ YE +S R + +
Sbjct: 234 ASQATFKEYEFNIDISDLVGDGALDEERFKNSY 266
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
++++Y I + + + I A + R + + I + T+ K+
Sbjct: 366 FDSEYYGRIALSFSCLILFFIGAPLG-SIIRKGGFGLPMILAIAIYVTYFFGNTMGKNLA 424
Query: 330 KSGILLPVAAALIPVILTISLSILILLQ 357
+ + V + I ++ I I + +
Sbjct: 425 EESSISAVLGSWISAMVMIPFGIFLTRR 452
>gi|94311740|ref|YP_584950.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
gi|93355592|gb|ABF09681.1| predicted permease [Cupriavidus metallidurans CH34]
Length = 372
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/354 (8%), Positives = 109/354 (30%), Gaps = 15/354 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + + I S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILGMAAN-GKASPNDVLMLIGLATIGYLSILLS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++V + SE+V+ + G+S+ L+ P + + + +L+
Sbjct: 66 ATLFISTLIVLTRWYKDSEMVVWFSSGVSLRDLIKPVLQFAAPFFVMALLLGLFAWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +++ G +++ +N + + I + + +
Sbjct: 126 QQSALFRDRFEQRGVLSMIASGRFIEPANGNYVL--FIEGIDADMKHARNVFVANAESGK 183
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ + +L + + + + + ++ D + + +
Sbjct: 184 IGVALAHQGQFETMPNGDRLVVMEHGRRYAGIPGQLNYRI---VEFDKYAVKVDNKPQDA 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
++ K + + + I +P++ +IA ++ R + +V
Sbjct: 241 AADLPTKSRDTIDLIRDPTRENLGELLWRISLPILAFNFVMIAIPLAYVNPRLGRYTPLV 300
Query: 309 AYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++Y +I + +++ +SG + A + ++++ +
Sbjct: 301 F-----AVLIYLTYSNLINLAQAWVRSGAMSFWMAIWPIHLAVFLCALVMFRYR 349
>gi|300931864|ref|ZP_07147161.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|300460287|gb|EFK23780.1| conserved hypothetical protein [Escherichia coli MS 187-1]
Length = 353
Score = 71.7 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/343 (11%), Positives = 92/343 (26%), Gaps = 13/343 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D V L Y D N
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLPLDQSPNV 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +K + + + L + M L+A S+S R
Sbjct: 240 K-----------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQ 288
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 289 GRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 330
>gi|326562956|gb|EGE13238.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 267
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 80/268 (29%), Gaps = 16/268 (5%)
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ +++ ++ V + + + + + W +
Sbjct: 1 WAMLPAVIFVAISLGVNQFVLPTANQYATAIRADTIYDKLITID--GYWSVNHDGDSQDV 58
Query: 164 IGAKKILPENHIWEDFTSITIDKK-------------NKIIHRKDADLAIIYNDKVKLKK 210
+ E + E D + + +A A + +
Sbjct: 59 VYISYADNEGGLGEVKRYQLKDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDE 118
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ L +PI +++ S + R
Sbjct: 119 IGIGTSQVQQAHSEGKILTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL-RH 177
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
E F+ ++ P ++++ L+A+S RS + V + +G + + +
Sbjct: 178 ELAFWQKLLSPFAVLSLVLVASSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVAL 237
Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358
+ L P+ AL+P++L+ + +L +K
Sbjct: 238 ATGLSPLLMALVPIVLSAMAGMYLLNRK 265
>gi|261838772|gb|ACX98538.1| hypothetical protein KHP_1349 [Helicobacter pylori 51]
Length = 355
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNTTHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|46198338|ref|YP_004005.1| hypothetical protein TTC0030 [Thermus thermophilus HB27]
gi|46195960|gb|AAS80378.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
Length = 336
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 106/355 (29%), Gaps = 22/355 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L DL + + +L R+P +
Sbjct: 2 LGRYVLREVLVPYLVGVFLFAAL-LTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P V+ ++ + + +L + +
Sbjct: 61 LALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ L+ + + + F PE + +
Sbjct: 121 PRSQEAYDRLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVVDE 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R + +++++ K + + + + + +
Sbjct: 181 RG------RVYSAEEGLWDEEGWRLKGYVVEGEEVRPFEGVLPFPARFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E+ + ++ + R L L+ + + S +
Sbjct: 235 DSTPLEELWARAQVEPEARFAFHRR------------LADALGGLVLGAAAAALGLSLRE 282
Query: 305 RIIVAYG-IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G + F Y + T+ + + P+ A +P + +L+ + +
Sbjct: 283 AAWAFLGVVLLIFGYYVLWTLAAQLAR-YDVSPLLA-YLPDLFYGALAGALAWRL 335
>gi|90021020|ref|YP_526847.1| queuine tRNA-ribosyltransferase [Saccharophagus degradans 2-40]
gi|89950620|gb|ABD80635.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
Length = 360
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/320 (10%), Positives = 97/320 (30%), Gaps = 16/320 (5%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
L R+P ++ I+P + ++ + L SE+ + A G+S +L+
Sbjct: 29 GELDGGVLLTLMTYRLPAYLELILPLGLFLGILMAYGRLYLESEMTVLHACGLSQGKLIG 88
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V + ++ + + G + L+ + ++ D + + ++
Sbjct: 89 FTMVSTFVVACVVGVFSLYLGPEGVRASEKLLAEQRNRTDFETLKPARFHELDGGSGIS- 147
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRK--------DADLAIIYNDKVKLKKVVEYQ 215
A+ I + + + + A + LK Y
Sbjct: 148 -YAESISDDKQKLQKVFMAKLAPDSVDDDLTVLTAESGETVVDAETGVKYLLLKNGRRYV 206
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
++ ++ + + + + + A
Sbjct: 207 GRPGEVNYKVVEFKTFSQILPEPDYEAVKPKKETDGL-----STAQLFERDTLAARAALQ 261
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + +P++++ + L+A +S R + ++ I + + + G
Sbjct: 262 WRLSLPVLVMVVGLLAVPLSRTQPRQGRYAKMLP-AILLYIFYLVCVNGARGAIEDGSAP 320
Query: 336 PVAAALIPVILTISLSILIL 355
+ + L++L++
Sbjct: 321 FIGLLWVVHGAFFCLALLLI 340
>gi|116327644|ref|YP_797364.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116120388|gb|ABJ78431.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
Length = 606
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 1/188 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY L L L ++ V+ L ++ R + +
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGK-GVDPLRLLDYFGYLLANTL 164
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + + +
Sbjct: 165 PMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYL 224
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + +
Sbjct: 225 SPENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGV 284
Query: 184 IDKKNKII 191
++ +I
Sbjct: 285 QIREWEIF 292
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
++ + + + I +P+ + I+ + L RS + + +
Sbjct: 460 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 518
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 519 LMIYFTFFTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKRTD 564
>gi|317179675|dbj|BAJ57463.1| hypothetical protein HPF30_1366 [Helicobacter pylori F30]
Length = 355
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 113/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNATHLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P L ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYFKKL 351
>gi|121591520|ref|ZP_01678785.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
gi|121546628|gb|EAX56818.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
Length = 277
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 3/233 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ D+ + + + L Y+ +D T + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGL 233
>gi|13236182|gb|AAK16078.1|AF288080_5 YacA [Photorhabdus luminescens]
Length = 146
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 1/134 (0%)
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
S + + + S + + + + ++ + + I P +
Sbjct: 13 SADWKTRLTPQKLGVVALDPDALSISGLYQYIKYLKQTEQESGX-YQLNMWKKIFAPFSV 71
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M L+A S R+ + + GI GF+ Y + I + V AAL+P
Sbjct: 72 AVMMLMALSFIFGPLRTVLMGVRIITGISFGFLFYVLNEIFGPLSLVYSMPAVLAALLPS 131
Query: 345 ILTISLSILILLQK 358
L +++SI +LL++
Sbjct: 132 FLFLTVSIYLLLKR 145
>gi|307312964|ref|ZP_07592592.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|306907132|gb|EFN37639.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315063568|gb|ADT77895.1| conserved inner membrane protein [Escherichia coli W]
Length = 359
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/344 (13%), Positives = 115/344 (33%), Gaps = 7/344 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ LK+ L L +++ F L I + + + L VP + Q I+P
Sbjct: 2 RETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMAQLILPLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ ++ L SE+ + A G+S L+ ++ ++ I + + +
Sbjct: 61 LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+++ + K N + Q +N +FI + ++ + + +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
+ L + + + ++ + ++ + + +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG-----HQAVALD 235
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
RA + + I + + M L+ +S+ R + + +
Sbjct: 236 PNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLP 294
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + I T +KS G G L P ++ ++L+I++
Sbjct: 295 AMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 338
>gi|114799726|ref|YP_760969.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114739900|gb|ABI78025.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 380
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/360 (11%), Positives = 119/360 (33%), Gaps = 13/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + + L+ L + +++ + + + E S + P
Sbjct: 1 MTKI-QLHLLRQVLQAVLIIVGSLVMVALLAQGLSRTDVILENR-QSAITYFYIVMLGSP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I ++P V + +++ SE+V+++A G++ WQ+ +P + +++ + + V
Sbjct: 59 QVIALLLPLALFVAGVWSLNRIHKDSEIVVAQAAGMTRWQVASPVLRLAMVCLVVHLGVN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + + + + + + D T
Sbjct: 119 LWVQPMSQRAMREAVAEARADLAAALFRAGQFTSNGERLTFYARDQVGGELRGVLISDMT 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDG 236
I+ R A +++ + L+ + Q + + ++ M
Sbjct: 179 DPEFPMD--ILARSAALVSVDGQPTLLLRDALSQQLDENQQLSVLEFDQYMFDLSDFMKE 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--ASV 294
+ + + + +E+I + N + + P++ + M L+A A +
Sbjct: 237 DSELVLKASDKFLHELI-FLDRKNYFENKEADSFLAEANARLTSPMLNIVMALLAIFAVL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+FSR + G + ++ + + A + IL + I
Sbjct: 296 GGDFSRQG-YAKRIGLATG-GAIFVLVLHLALQSAAADDPALNIALWVVPILAGIILGWI 353
>gi|319404056|emb|CBI77644.1| putative permease, YjgP/YjgQ family [Bartonella rochalimae ATCC
BAA-1498]
Length = 382
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 107/361 (29%), Gaps = 11/361 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I Y K LLGA+ + + + + N + ++ +P
Sbjct: 1 MRIFELYILKRIFILFSAVLLGAVGISWTVQILARVN-FLTTNGQTFLTILYFSSLLIPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+PF +V + +N+ SEL + A GIS + P ++ +IL + + N
Sbjct: 60 VTSLIMPFALVVAITTILLTMNQDSELAVISASGISKNIVWKPILLLAILASFTSFSITN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA ++ + + Q I IG +
Sbjct: 120 FIAPHARLNMRQILASSHSDLISLFIREGSF-QELTKNLYIEIGERNANGTIGRLFIADQ 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K A + + L + + + + +F
Sbjct: 179 RDPQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTF--SLSEFI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + +S+ N + + + + L + LIA +++
Sbjct: 237 PNKKTPNIYPKDRPLSYLFNPNPSDPHYQRKPLQYRAELHRRFTECLYPIVFALIAIAIA 296
Query: 296 L-EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S I ++Y + ++ +IP+ +++ ++
Sbjct: 297 GDAHSYRQARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYVIPIGISLLTFFML 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|83952306|ref|ZP_00961038.1| Predicted permease [Roseovarius nubinhibens ISM]
gi|83837312|gb|EAP76609.1| Predicted permease [Roseovarius nubinhibens ISM]
Length = 372
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 116/357 (32%), Gaps = 15/357 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ S L A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLISDGQSSF-VFLELTALTLPGVIAVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S W+L P ++ +++ L+ + + +
Sbjct: 60 IAGFAGAVYVTNRLSTESELTVMQATGYSPWRLARPVLIYGVIVAAMMSLLTHVLVPTSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ P + ++I PE + + F S D +
Sbjct: 120 HRLETRKAEVSRNVTAKLLTEGEFLH---PAGGVTFYIREITPEGELRDVFLSDRRDIQA 176
Query: 189 KIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+I+ + KL V + +I +
Sbjct: 177 PVIYTSKMAYLVQEGGGTKLVMVNGLAQTAQTKGNRLFTTFFTDFSYDISGLISDDVINL 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEFS 299
S ++ + + + + + + LM V LI + + +S
Sbjct: 237 THARYASTPALMTRAAEIAQISGVSEGVVTLELHNRFAQALMCVVAALIGFATLLLGTYS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R R I+ + + T+ + L P+ A P + L +L+L
Sbjct: 297 RFGVWRQILLAFLLLVAVKLVEGTLTSPILSAPELWPL--AYAPPAMGFVLVVLLLY 351
>gi|110643219|ref|YP_670949.1| putative permease [Escherichia coli 536]
gi|170683865|ref|YP_001745245.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
gi|194436786|ref|ZP_03068886.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|218706607|ref|YP_002414126.1| hypothetical protein ECUMN_3464 [Escherichia coli UMN026]
gi|256024434|ref|ZP_05438299.1| hypothetical protein E4_13749 [Escherichia sp. 4_1_40B]
gi|293406597|ref|ZP_06650523.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298382336|ref|ZP_06991933.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300900317|ref|ZP_07118496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|312968688|ref|ZP_07782897.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331684626|ref|ZP_08385218.1| putative permease [Escherichia coli H299]
gi|110344811|gb|ABG71048.1| putative permease [Escherichia coli 536]
gi|170521583|gb|ACB19761.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
gi|194424268|gb|EDX40255.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|218433704|emb|CAR14621.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli UMN026]
gi|291426603|gb|EFE99635.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298277476|gb|EFI18992.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300356207|gb|EFJ72077.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|312286906|gb|EFR14817.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331078241|gb|EGI49447.1| putative permease [Escherichia coli H299]
Length = 356
Score = 71.3 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|215488306|ref|YP_002330737.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
gi|215266378|emb|CAS10815.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
Length = 356
Score = 71.3 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKQFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|317013268|gb|ADU83876.1| hypothetical protein HPLT_07455 [Helicobacter pylori Lithuania75]
Length = 355
Score = 71.3 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 115/354 (32%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+++ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFKFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + +D T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEYKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + N + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + ++LS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKL 351
>gi|301325676|ref|ZP_07219137.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|300847531|gb|EFK75291.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|323966511|gb|EGB61944.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
gi|327251764|gb|EGE63450.1| hypothetical protein ECSTEC7V_3616 [Escherichia coli STEC_7v]
Length = 356
Score = 71.3 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|148651872|ref|YP_001278965.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
gi|148570956|gb|ABQ93015.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
Length = 449
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 61/164 (37%), Gaps = 1/164 (0%)
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
D + +D+ + Q +++ +N+PI + + S ++ +
Sbjct: 286 DTQATSVDSDQSGQAMALTSQPLVAKQAESTDVINLPISPSSVYLLTRRAEDLSLTQLYE 345
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ E F+ ++ P ++++ ++A S R++ + + I
Sbjct: 346 HKRFNASQGTRSL-EHEVAFWQKLLSPFSVLSLVIVACSFVFGSLRTHSLGLRIVVAIIF 404
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G + I + + P+ L+P+I + L ++ ++
Sbjct: 405 GLLFSYIQDLTSFVSLATGAPPLLMVLLPIIGSGLLGFYLIRRQ 448
Score = 69.3 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 5/219 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K L L+ +LG L V + + Y+ R P +
Sbjct: 20 IISRYVKKNALFAMLFAVLGLWALQMVFAYLAELEDISDA--YTYVDALTYIFYRSPYFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ +P L+ +V L SEL++ RA G+SI++++ + + + I +L+ I
Sbjct: 78 QQFMPTGALLGAVVGLGLLANNSELIVMRAAGLSIYRIVGWVLQPAFIFVILALLINQFI 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + S W + P + K + + I
Sbjct: 138 LPQSNVKASQIRK---PDTALLASVNGYWTLQNAPTEAGSTTDNKEGLSSEQAHNIIFID 194
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
N I N+ + K Y
Sbjct: 195 YADANGNIGEVKRWHLDADNNLTAVSKATGGTYVPSLQQ 233
>gi|300824070|ref|ZP_07104191.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669797|ref|ZP_08370642.1| putative permease [Escherichia coli TA271]
gi|331679054|ref|ZP_08379726.1| putative permease [Escherichia coli H591]
gi|300523460|gb|EFK44529.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|324119792|gb|EGC13672.1| permease YjgP/YjgQ family protein [Escherichia coli E1167]
gi|331062710|gb|EGI34624.1| putative permease [Escherichia coli TA271]
gi|331073119|gb|EGI44442.1| putative permease [Escherichia coli H591]
Length = 356
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|329118130|ref|ZP_08246842.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
gi|327465790|gb|EGF12063.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
Length = 431
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/348 (11%), Positives = 110/348 (31%), Gaps = 7/348 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I + F K T + + + ++ + + + + A L
Sbjct: 67 PMIYRQNFIKELTYTAVGIFVVILAVLVSTQAVNLLGRAAD-GRVAADAVAALIGFWTLG 125
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+S+ Q L P + ++ +
Sbjct: 126 MTPLLLVLTAYISVLTVLTRFWRDSEMAVWLSCGLSLKQWLRPVLAFALPFAALVAAMQL 185
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + F
Sbjct: 186 AVLPWAELRSREFAELLKQKQELSLVEAGEFRTLGKRNGRVYFVETFDTESGVMKNLFLR 245
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + + + + K L+ Y+YG IP + + +
Sbjct: 246 EQDDKGRENVVFAKEGRFALTDHKRTLELTQGYRYGGIPGEADYNRVGFEHLSLVISTTP 305
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I N + + + + +PL V + ++A +S R+
Sbjct: 306 KIVNPVDHRRTIPTARLIG----SDNPQYRAELMWRVSLPLAAVILAILAVPLSYFNPRT 361
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ + I + +T++++ ++G + A +P+ + +
Sbjct: 362 GHT-YNILFAIGFFLVYQNGLTLLRNAIENGKIG-FWAGFLPLHILML 407
>gi|26249548|ref|NP_755588.1| hypothetical protein c3717 [Escherichia coli CFT073]
gi|170018761|ref|YP_001723715.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|254162934|ref|YP_003046042.1| hypothetical protein ECB_02856 [Escherichia coli B str. REL606]
gi|300916913|ref|ZP_07133616.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300923637|ref|ZP_07139665.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
gi|300950816|ref|ZP_07164702.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300958361|ref|ZP_07170502.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
gi|301643654|ref|ZP_07243695.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|307139670|ref|ZP_07499026.1| hypothetical protein EcolH7_16283 [Escherichia coli H736]
gi|312972759|ref|ZP_07786932.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643681|ref|ZP_08344812.1| putative permease [Escherichia coli H736]
gi|26109956|gb|AAN82161.1|AE016766_249 Hypothetical protein c3717 [Escherichia coli CFT073]
gi|169753689|gb|ACA76388.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|242378536|emb|CAQ33322.1| ybl136 [Escherichia coli BL21(DE3)]
gi|253974835|gb|ACT40506.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253978990|gb|ACT44660.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|284923007|emb|CBG36099.1| putative permease [Escherichia coli 042]
gi|300314945|gb|EFJ64729.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
gi|300415883|gb|EFJ99193.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300420078|gb|EFK03389.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
gi|300449911|gb|EFK13531.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|301078038|gb|EFK92844.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|309703416|emb|CBJ02755.1| putative permease [Escherichia coli ETEC H10407]
gi|310332701|gb|EFP99914.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|323936015|gb|EGB32310.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
gi|323941918|gb|EGB38097.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
gi|331037152|gb|EGI09376.1| putative permease [Escherichia coli H736]
gi|332344939|gb|AEE58273.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 356
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLIDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|313683045|ref|YP_004060783.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
16994]
gi|313155905|gb|ADR34583.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
16994]
Length = 362
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/347 (11%), Positives = 107/347 (30%), Gaps = 5/347 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL+ L+ + DL E +++ N + + + ++P
Sbjct: 7 LSSLYLRYFSIVLIALSSFMVGFDLMENASELPHSANL----VLIYIMYKYFYAVDMMLP 62
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
I L R++ LV +IG S ++L PF+ + LL + +
Sbjct: 63 ISLTFAMIASLVELVRSNALVAYFSIGYSKARILAPFLTMTTLLISIYIGLHATNFARAN 122
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +L + + + +E +
Sbjct: 123 EFADNLRDSSEFIRPTSNLFFTHEGNYIYFGNLYPLSKRAEDIRIFTFEKGQLKEALSAS 182
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ ++R + + G + DK + + K + E + +
Sbjct: 183 EAVYRNGFWNIEKAHMLRPPEDFDLKGLGIVTEDKENLKVLRDFKPKILDQVYEGKVNFT 242
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ ++ ++ N+ + + Y + + P + +I + + SR +
Sbjct: 243 ITDGLEALTLLKNQNV-DVAKIMSGMYRMFITPWFAPLLMVIFFTYTPVSSRFLNLSLFS 301
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + M++ ++ + + + P ++P+ L + + L
Sbjct: 302 FGAILATLMVWGLLFMFGELSNNKTISPEIGIILPIGLLFIVMVWRL 348
>gi|331648771|ref|ZP_08349859.1| putative permease [Escherichia coli M605]
gi|330909041|gb|EGH37555.1| permease Ygh-P1, YjgP/YjgQ family [Escherichia coli AA86]
gi|331042518|gb|EGI14660.1| putative permease [Escherichia coli M605]
Length = 356
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|149200566|ref|ZP_01877574.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
gi|149136338|gb|EDM24783.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
Length = 329
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/325 (16%), Positives = 116/325 (35%), Gaps = 28/325 (8%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+P I+ IP +LV +VF ++ +E+ RA GIS+WQ++NP ++ +++
Sbjct: 1 MLLPKILAYAIPIASLVSVTLVFSRMSAENEITAMRASGISLWQIVNPAILLALVSSACL 60
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM---------------------QI 155
+ E +++ + + ++
Sbjct: 61 FYLNMFAVPHLEATRKSMMKGELLSNPSTFLRGGTTIDLGKLSVEIGEKKEDGTLKDLRV 120
Query: 156 SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
+ I + ++L ++ + T + + + D + + NDK + K + +
Sbjct: 121 IEVDKATDIVSNQLLAQSGKIINTTENSFTIEFIDVIILDNNWEFLKNDKGENKSLSGVK 180
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF- 274
R+P + T +++ ++ + E+I +++ R E
Sbjct: 181 VTRLPNANTTYTFYTNDELNS-GNLRKRAKYLNIKEMIARLAVLKNKEQTKTVRREHTDL 239
Query: 275 ----YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ + +A L+A L SRS I + + Y I I +F K
Sbjct: 240 LYNLNKNLALSFSPLAFLLMALPFGLRSSRSE-TSIGLLISLIVMMTYYATILITGAFDK 298
Query: 331 SGILLPVAAALIPVILTISLSILIL 355
+ P +P I+ SL + ++
Sbjct: 299 HTAMHPEILVWLPNIIFQSLGLGMI 323
>gi|55980367|ref|YP_143664.1| hypothetical protein TTHA0398 [Thermus thermophilus HB8]
gi|55771780|dbj|BAD70221.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 336
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 106/355 (29%), Gaps = 22/355 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L DL + + +L R+P +
Sbjct: 2 LGRYVLREVLVPYLVGVFLFAAL-LTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P V+ ++ + + +L + +
Sbjct: 61 LALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ L+ + + + F PE + +
Sbjct: 121 PRSQEAYDGLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVVDE 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R + +++++ K + + + + + +
Sbjct: 181 RG------RVYSAEEGLWDEEGWRLKGYVVEGEEVRPFEGVLPFPARFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E+ + ++ + R L L+ + + S +
Sbjct: 235 DSTPLEELWARAQVEPEARFAFHRR------------LADALGGLVLGAAAAALGLSLRE 282
Query: 305 RIIVAYG-IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G + F Y + T+ + + P+ A +P + +L+ + +
Sbjct: 283 AAWAFLGVVLLIFGYYVLWTLAAQLAR-YDVSPLLA-YLPDLFYGALAGALAWRL 335
>gi|157162460|ref|YP_001459778.1| YjgP/YjgQ permease [Escherichia coli HS]
gi|157068140|gb|ABV07395.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
Length = 356
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTKDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|24114288|ref|NP_708798.1| hypothetical protein SF3027 [Shigella flexneri 2a str. 301]
gi|30064335|ref|NP_838506.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
gi|24053444|gb|AAN44505.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042592|gb|AAP18316.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
gi|281602371|gb|ADA75355.1| putative permease [Shigella flexneri 2002017]
gi|313648098|gb|EFS12544.1| hypothetical protein SF2457T_3698 [Shigella flexneri 2a str. 2457T]
gi|332752656|gb|EGJ83041.1| hypothetical protein SFK671_3614 [Shigella flexneri K-671]
gi|332753042|gb|EGJ83426.1| hypothetical protein SF434370_3221 [Shigella flexneri 4343-70]
gi|332765462|gb|EGJ95680.1| hypothetical protein SF293071_3544 [Shigella flexneri 2930-71]
gi|332999939|gb|EGK19522.1| hypothetical protein SFK218_4003 [Shigella flexneri K-218]
gi|333014895|gb|EGK34240.1| hypothetical protein SFK304_3820 [Shigella flexneri K-304]
Length = 356
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRAGSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|304413752|ref|ZP_07395196.1| inner membrane component LptF of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
gi|304283843|gb|EFL92237.1| inner membrane component LptF of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
Length = 367
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/356 (11%), Positives = 122/356 (34%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K K+ + L +++ L I ++ +P +
Sbjct: 2 IITKYIIKKTFKSQMAILFILLLIFISQKLIAILSE-TVNGEIPTHLILSFLGLGLPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ + ++ E+ + A G S L+ ++ ++ +
Sbjct: 61 QLVLPLSLFLGLLITYGKMHTEREITVMHACGFSQNSLILVALILAMGTAALAAINTLWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ ++ N + + + +F+GA +HI+
Sbjct: 121 MPWSVTYQGKILNDFRANPTLAALIEGQFQSSMDGKTVLFVGAVDGKKFDHIFLAQLQPD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
++ I+ ++ +A + + +Y R + + I
Sbjct: 181 GSRRPSIVIAENGYIAERPDGSQIVTLDKGTRYEGTALLRDFRITDFKNYQVTINPQSIT 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S + + A ++F++ + + ++ M L+A +S+
Sbjct: 241 QNTNTSEQMSIRSLWHS----------SHPDARSEFHWRLTLITSVIIMALLAVPLSVVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R ++ + + I + + + + ++S G L P+ + ++L+I++
Sbjct: 291 PRQSRT-LNMLPAILLYLIFFLLQSSLRSSTAQGKLDPLLWLWMVNGAYLALAIVL 345
>gi|310816137|ref|YP_003964101.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
Y25]
gi|308754872|gb|ADO42801.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
Y25]
Length = 379
Score = 70.9 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/359 (10%), Positives = 107/359 (29%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G RY + +F L +++ +V + +Q+ + A +P
Sbjct: 1 MGRFDRYLLSQLMTLFGFFSLVLIMVYWVNRAVALFDQLIS-DGQGMWVFVEFTALSLPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+ ++P V ++ V L+ SELV+ ++ G S +++ +V ++ + ++ +
Sbjct: 60 IIKLVLPLSAFVASVYVANRLSGESELVVVQSTGFSPARVMRAVMVFGLIAVVMVQILAH 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + +M ++ +
Sbjct: 120 VLVPLSNQRLNIRQAEVTQTATARILRAGEFMTPIAGVTLYIRSITPEGELQDVFLSDSR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ R V ++ + + ++ +
Sbjct: 180 ASLADTIYTASRAYIVRTERAPQLVMVDGSIQNLSHQTERMSFTTFSDFAYDLSSILPSV 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + +++ N R E + ++ + A +
Sbjct: 240 DPAALSLRNATTLQLLLARDEMTLLFGADNIRTEIHDRLSEPLLGLIGPLLGFATLLIGG 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
FSR +A + ++ I + + +P + + ++ L+L
Sbjct: 300 FSRFG-LSRQIAAAVGLVILVKMIESTATGAIRRDA-GLWWTLYLPAVFGLGITGLLLF 356
>gi|329907053|ref|ZP_08274545.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547110|gb|EGF31984.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
IMCC9480]
Length = 376
Score = 70.5 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/353 (13%), Positives = 111/353 (31%), Gaps = 8/353 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + T + + L +I Q + L +
Sbjct: 2 IFQRALRRELISTAGAVFTTLFTITITVMLIKILGQAAG-GKVASEDVLALIGFAALNYM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ T + ++V + SE+V+ A G+S+ + + + + + + L+
Sbjct: 61 PVILILTTFISVLLVVTRSYQDSEMVVWFASGLSLTRWIPTVLSCGLPVVLVIALLSFYA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ D K + Q S +F ++ F +
Sbjct: 121 TPWANRSSSEFRERFEKRADIAKVAPGKF-QESASSNRVFFVEGVTGDAMNVRNVFVNTV 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D K+ I+ K+ + N L +Y +++ +
Sbjct: 180 RDGKSSIVVSKEGRTEVDANGDKFLVLSNGRRYEGTLDERDFQLMEFESYGVLISSAVPG 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + M+ + F+ + + +PLM + + L+A + R +
Sbjct: 240 LMADLSSRSMSTMALLANPDGFNQGELL----WRLSLPLMCLFLMLLAIPLGFVNPRGGR 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + +I++M++ L A PV + I +L
Sbjct: 296 SA-NLIIALLLFVFYSNMISLMQAAVAQNRLGVWLA-WWPVHVLAMAVIALLF 346
>gi|293416425|ref|ZP_06659064.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
gi|291431781|gb|EFF04764.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
Length = 356
Score = 70.5 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|291284363|ref|YP_003501181.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|301017325|ref|ZP_07182089.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|331654591|ref|ZP_08355591.1| putative permease [Escherichia coli M718]
gi|331664594|ref|ZP_08365500.1| putative permease [Escherichia coli TA143]
gi|290764236|gb|ADD58197.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|300400298|gb|EFJ83836.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|320656364|gb|EFX24271.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661735|gb|EFX29143.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. USDA 5905]
gi|320666886|gb|EFX33862.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O157:H7 str. LSU-61]
gi|331047973|gb|EGI20050.1| putative permease [Escherichia coli M718]
gi|331058525|gb|EGI30506.1| putative permease [Escherichia coli TA143]
Length = 356
Score = 70.5 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|261840174|gb|ACX99939.1| hypothetical protein HPKB_1402 [Helicobacter pylori 52]
Length = 355
Score = 70.5 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 112/354 (31%), Gaps = 5/354 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + N + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSAN----MIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI + + + + + K + + T +
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKGKTLESY 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + + +
Sbjct: 179 AEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + + Y ++P + ++++ A S +R
Sbjct: 239 PAVSITDALLSLHAL-VRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + + F SGIL+P L P + +SLS+ +
Sbjct: 298 ALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLSLSLWYFKKL 351
>gi|193067274|ref|ZP_03048242.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|209920456|ref|YP_002294540.1| hypothetical protein ECSE_3265 [Escherichia coli SE11]
gi|218555554|ref|YP_002388467.1| hypothetical protein ECIAI1_3129 [Escherichia coli IAI1]
gi|218696689|ref|YP_002404356.1| hypothetical protein EC55989_3396 [Escherichia coli 55989]
gi|260857120|ref|YP_003231011.1| hypothetical protein ECO26_4088 [Escherichia coli O26:H11 str.
11368]
gi|260869742|ref|YP_003236144.1| hypothetical protein ECO111_3809 [Escherichia coli O111:H- str.
11128]
gi|293449328|ref|ZP_06663749.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
gi|300815538|ref|ZP_07095762.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|192959231|gb|EDV89666.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|209913715|dbj|BAG78789.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218353421|emb|CAU99487.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli 55989]
gi|218362322|emb|CAQ99944.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI1]
gi|257755769|dbj|BAI27271.1| conserved predicted membrane protein [Escherichia coli O26:H11 str.
11368]
gi|257766098|dbj|BAI37593.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
11128]
gi|291322418|gb|EFE61847.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
gi|300531467|gb|EFK52529.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|320201894|gb|EFW76469.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli EC4100B]
gi|323173775|gb|EFZ59404.1| hypothetical protein ECLT68_2093 [Escherichia coli LT-68]
gi|323178689|gb|EFZ64265.1| hypothetical protein ECOK1180_2421 [Escherichia coli 1180]
gi|323183569|gb|EFZ68966.1| hypothetical protein ECOK1357_3349 [Escherichia coli 1357]
gi|323946693|gb|EGB42714.1| YjgP/YjgQ permease [Escherichia coli H120]
gi|324018177|gb|EGB87396.1| hypothetical protein HMPREF9542_03232 [Escherichia coli MS 117-3]
Length = 356
Score = 70.5 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|326335584|ref|ZP_08201771.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325692350|gb|EGD34302.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 481
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/273 (12%), Positives = 83/273 (30%), Gaps = 1/273 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY ++ + L +++ + +++ SI A +P
Sbjct: 1 MKILDRYILSRFIFNFVSSFLIIILIFIFQTIWLYIDELAGK-GLSIFIIIKFVALMLPN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I+P ++ +I+ + EL +A G+S+ + ++ +LL I N
Sbjct: 60 LIPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKGTRTLILFMLLLSIGVFFTFN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + L K+ + + + + + H
Sbjct: 120 NLQPWSNRKAVALRDSIKNKQPSLAISQGIFNNVQDFSIKVEKKTGENGEFLHDIVIHKL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+I K+ +L+ L+ +++ + ++ + P FQ +
Sbjct: 180 GVDGLSRTVIKAKEGELSGHKKGSNVLQLILKDGTYYEDVKSANSDITFPFVKAKFQVHT 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
S + + +
Sbjct: 240 LNIDISSLNTEVSYDESGERDYYKTMNINQLSH 272
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 2/114 (1%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + + + F I + + + +AA + R +
Sbjct: 347 SLINNLDNNKDNVEYQQKLINIYRLTFSDKIALAITCFVLFFVAAPLGA-IIRKGGIGMP 405
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI-LLQKED 360
+ I Y + K+ +G + P A IP + L I + +L ED
Sbjct: 406 LVVAIGLFLTYYFSGLLTKNMATNGNINPYIAPWIPTFFLLPLGIYLTILVNED 459
>gi|293412358|ref|ZP_06655081.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469129|gb|EFF11620.1| conserved hypothetical protein [Escherichia coli B354]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 94/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI-KMDGFQKF 240
+ D V L Y D N ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRHLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|222034703|emb|CAP77445.1| hypothetical protein LF82_488 [Escherichia coli LF82]
gi|312947541|gb|ADR28368.1| hypothetical protein NRG857_14790 [Escherichia coli O83:H1 str. NRG
857C]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|256829583|ref|YP_003158311.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
gi|256578759|gb|ACU89895.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
Length = 392
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/361 (12%), Positives = 120/361 (33%), Gaps = 10/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L R FK L G + L+ + L ++++ + L P +
Sbjct: 6 LLQRELFKEMGIVASISLGGFLSLILLGRLLQLRDLFMG-QGVTFFDLVKLFTYLSPFFL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP ++ + F + EL+ RA G+S+W LL ++ +L TV +
Sbjct: 65 IMLIPVSCMLGVFLTFLRMGADRELISLRAGGVSLWPLLPAPLLLCLLCSALTVWISLSG 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-------KILPENHIW 176
+ G + + + N + + + +
Sbjct: 125 ISWGMDNFRNTVVELARNKTSVNVQPGVFNTSFPGLTVYARQSDPGSGALLDVFVLDSSR 184
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + +I + + + + + + I + +L++ + G
Sbjct: 185 SKTRATIVAPLGRIESDSERGQVFVRLEDGHVYREQGGELSVISFESYILSLDMTRLLGG 244
Query: 237 FQKFSEQFASRSFYEIIKKMSFS-NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F+ + S+ ++ ++ R + + + +P + + A ++
Sbjct: 245 FELKDKAPKEMSWDDLRTLKGDGFEDRSVNFQRRVDIELHKRFSLPAACIVLGFFALPLA 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F + + + + F+ Y ++ + + GI+ P A +P ++ + + + +
Sbjct: 305 FFFQGMKRQ-FGLIACLGTFFLYYVFLSGGMALAEGGIIAPALALWLPNVVFMLAAGIGM 363
Query: 356 L 356
Sbjct: 364 W 364
>gi|190572727|ref|YP_001970572.1| putative transmembrane permease [Stenotrophomonas maltophilia
K279a]
gi|190010649|emb|CAQ44258.1| putative transmembrane permease protein [Stenotrophomonas
maltophilia K279a]
Length = 360
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/365 (11%), Positives = 111/365 (30%), Gaps = 19/365 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY ++++ L L+ +++ L +I + + +
Sbjct: 1 MLK-LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ +LL P ++ + +
Sbjct: 59 AYLPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPRRLLRPLLMLVVPVVALVGACS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ +I + + + + Q+ N +
Sbjct: 119 LWLGPWAGRVAEQMIIEANRSVLMAGLEPGRFTQLPNGGVVYLSSISPDGTQLGRVFLQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF 237
+ ++L + + + + N DG
Sbjct: 179 QKDDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGLDYRLATFARNDVALPDGA 238
Query: 238 QKFSEQFAS-RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q + ++ A+ Q + + PL+ +A L+ +
Sbjct: 239 QTRTGDDPELMPTTQLF----------GDDRPEAQAQLHRRLAPPLIALAFALLTVPLGR 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++ + + + ++ I + +G + P + ++L+I +
Sbjct: 289 SSPRQQRYGRMM-LALMAYMVGTNLMFIGSGWIANGKIPPALGLWWLTLPLLALAIWM-- 345
Query: 357 QKEDG 361
DG
Sbjct: 346 YARDG 350
>gi|188494208|ref|ZP_03001478.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|188489407|gb|EDU64510.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|213421645|ref|ZP_03354711.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 128
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D + + S + + + S R + + I PL + M L+A S
Sbjct: 4 PDKLGVVALDPDALSISGLHNYVKYLKSSGQ-DAGRYQFNMWSKIFQPLSVAVMMLMALS 62
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 63 FIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLW 122
Query: 354 ILLQK 358
++L+K
Sbjct: 123 LMLRK 127
>gi|300973446|ref|ZP_07172202.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|300410788|gb|EFJ94326.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|315291260|gb|EFU50620.1| conserved hypothetical protein [Escherichia coli MS 153-1]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|91212394|ref|YP_542380.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
gi|117625286|ref|YP_854458.1| putative permease [Escherichia coli APEC O1]
gi|218560055|ref|YP_002392968.1| hypothetical protein ECS88_3362 [Escherichia coli S88]
gi|218691271|ref|YP_002399483.1| hypothetical protein ECED1_3630 [Escherichia coli ED1a]
gi|237706273|ref|ZP_04536754.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91073968|gb|ABE08849.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
gi|115514410|gb|ABJ02485.1| putative permease [Escherichia coli APEC O1]
gi|218366824|emb|CAR04594.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|218428835|emb|CAR09636.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
gi|226899313|gb|EEH85572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294492595|gb|ADE91351.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
gi|307625416|gb|ADN69720.1| hypothetical protein UM146_01455 [Escherichia coli UM146]
gi|315288787|gb|EFU48185.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|323951497|gb|EGB47372.1| permease YjgP/YjgQ family protein [Escherichia coli H252]
gi|323957869|gb|EGB53583.1| permease YjgP/YjgQ family protein [Escherichia coli H263]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|115525294|ref|YP_782205.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
gi|115519241|gb|ABJ07225.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
BisA53]
Length = 388
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 11/356 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
Y F+ L + L ++++ + + +I L + VP++I
Sbjct: 5 DSYIFRTTLASFAVILASLTGVIWITQALRGID-LMTSQGQTILTFLGLTSMAVPVLILV 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I P ++ L SE+++ A G+S +L+ PF+ + ++ + + +A
Sbjct: 64 IAPLALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLMRPFMYAAAVVALLVGFIGAYVAP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
G + + + + + Q+ + ++ D
Sbjct: 124 EGLRRINNWDSEITADILANILQPGRFAQLEQNLTIRVRERQPGGLLVGVFIDDR-RDPK 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKFSEQF 244
++ II L + L+ ++ D M F K +
Sbjct: 183 ERVSIIADHGTVLKNADGSFLVLEDGTLQRFELGKRDPALVAFGRYAFDMSKFSKARDVT 242
Query: 245 ASRSFYEIIKKM--SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--SLEFSR 300
+ + + + + + + ++ P+ A + + +R
Sbjct: 243 YGIRERYLWELIWPQPGDPLVARLPNQFRAEMHDRLMAPIYPFAFAALTFAFLGMPRTTR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ VA I + F+L + P AAL ++L ++++ + +
Sbjct: 303 QSRN-FSVAGAIAAVFLLRLAGFACSIMTNT---NPWFAALQYLLLAGAIALGMWI 354
>gi|332754457|gb|EGJ84823.1| hypothetical protein SF274771_3587 [Shigella flexneri 2747-71]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRAGSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYGC-DVCRTLVANGAIPLIPGLWLVP 333
>gi|307721571|ref|YP_003892711.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
gi|306979664|gb|ADN09699.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
Length = 358
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/349 (11%), Positives = 109/349 (31%), Gaps = 5/349 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +Y+K L L ++ V D ++ + S + + + I
Sbjct: 4 FKYISLHYIKYFLIILTALVLFVVGFDYMGSAEELSKS---SANLILIYLVYKSFSAIDI 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + I L R++ LV ++G S +L PFV S + I + +
Sbjct: 61 LLPVALVFAMISTKIYLIRSNALVSFFSLGYSRVDVLRPFVFVSTAVIILFIALHAWSNF 120
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTSITI 184
+ + I++ + + + + E+ + +
Sbjct: 121 ARSEEFSRNIKKNAQYLSPTRDLFFAYKGKYIYFSKLLPLQESAKNIRVFSVENESLKEV 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + K + G + + + E
Sbjct: 181 VVAKSARYIDNYWFIKRADIITKPDDLSLVSPGITVTKAKDLRILEGFRPKMLDQVYEGK 240
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + + + + +K NI + + Y + + P + + +I R
Sbjct: 241 VNFTIKDAVDAIRLLDKQNI-NTDNIKAALYKIFIYPFFVPCLIVIIFFFVPMSVRFLNV 299
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ I + + + I+ + + ++ ++PV++ L+ L
Sbjct: 300 SLFTFGAILATLLTWGILFFLIKLANNKVISSEIGIIVPVVILAVLAFL 348
>gi|323188590|gb|EFZ73875.1| hypothetical protein ECRN5871_3009 [Escherichia coli RN587/1]
gi|324005417|gb|EGB74636.1| hypothetical protein HMPREF9532_04927 [Escherichia coli MS 57-2]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|260845740|ref|YP_003223518.1| hypothetical protein ECO103_3664 [Escherichia coli O103:H2 str.
12009]
gi|257760887|dbj|BAI32384.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
12009]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALYVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|193062108|ref|ZP_03043204.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|192932328|gb|EDV84926.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
Length = 356
Score = 70.5 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|300905893|ref|ZP_07123626.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
gi|301304161|ref|ZP_07210277.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
gi|307310385|ref|ZP_07590033.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|300402362|gb|EFJ85900.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
gi|300840574|gb|EFK68334.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
gi|306909280|gb|EFN39775.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315062299|gb|ADT76626.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315256879|gb|EFU36847.1| putative permease [Escherichia coli MS 85-1]
gi|323377116|gb|ADX49384.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
Length = 356
Score = 70.1 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/343 (11%), Positives = 92/343 (26%), Gaps = 10/343 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D V L Y D N
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQ--------L 231
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +K + + + L + M L+A S+S R
Sbjct: 232 HLNPLVQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQ 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 292 GRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|224438054|ref|ZP_03658993.1| hypothetical protein HcinC1_08770 [Helicobacter cinaedi CCUG 18818]
gi|313144499|ref|ZP_07806692.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129530|gb|EFR47147.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 358
Score = 70.1 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 115/359 (32%), Gaps = 8/359 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ YYLK L LG ID + ++ + N + +
Sbjct: 2 LIRFVGFYYLKYFLIIFLGLEGFFLAIDTLKYIEELPDSANL----LILFLFYDGVFALT 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P ++ +I+ + ++S+L A+G S Q+L P ++ S LL + +
Sbjct: 58 YTLPISLVLCSIMFYMAFLKSSQLTALMALGYSKRQILAPLLLISSLLTAGFIGLNATPF 117
Query: 125 TSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ +I Q N KS + + + E+
Sbjct: 118 AYAKEYAESIIYQNAQNIRENLLLKSGNQYIFLRKLYPLFNGEARAEGIKVFTLDENSNL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + N+ K+ + + K + + +
Sbjct: 178 VAYHEANEAFFEKNIWVLKKAKSVDITNSPTLGEKALDISLKEELEILKGFSSKVLETIA 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + + + + N+ + + Y L+VIP + I A R
Sbjct: 238 QDKPIASIVDAFASLKIAKRQNV-SSDKIRGILYGLLVIPFFVPLCIAIIAYYIPSLPRY 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+I I ++ + + +G++ P L+P+ + ++ + + ++
Sbjct: 297 GNLTLISFVSIIVALAIWGVFYSLSQLSVAGLVYPEVGLLLPMGILCAVFMWHIWHIDE 355
>gi|298369121|ref|ZP_06980439.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298283124|gb|EFI24611.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 371
Score = 70.1 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 111/354 (31%), Gaps = 10/354 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + ++ A L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAVDAVAALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW--MQISNPQQDIFIGAKKILPENHIWEDFTS 181
E + + K + + + + + +
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRSDRVYFVETFDTESGIMKNLFLREL 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
N I ++ ++L+ Y D N + + S
Sbjct: 181 DKNGNDNIIFAKEGNFALTDNKRTLELRNGYRYSGKPGRADYNQVSFEHLSMI-----IS 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + N + + + + + +P+ ++ ++++A +S R+
Sbjct: 236 TTPKIVDPIAHRRTIPTAKLFGS-DNPQYQAELMWRLSLPISVLLLSMLAVPLSYFNPRT 294
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T ++ + G + L IL I +++++L
Sbjct: 295 GHT-YNILIAIGMFLIYQNGLTFLRDAVEDGKIHFWFGMLPMHILMIVIAVVLL 347
>gi|157156628|ref|YP_001464444.1| YjgP/YjgQ permease [Escherichia coli E24377A]
gi|256019096|ref|ZP_05432961.1| hypothetical protein ShiD9_09279 [Shigella sp. D9]
gi|332280199|ref|ZP_08392612.1| YjgP/YjgQ permease [Shigella sp. D9]
gi|157078658|gb|ABV18366.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
gi|332102551|gb|EGJ05897.1| YjgP/YjgQ permease [Shigella sp. D9]
Length = 356
Score = 70.1 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + + +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLKPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRIKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|306816677|ref|ZP_07450809.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
gi|305850242|gb|EFM50701.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
Length = 356
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +K + + + L + M L+A S+S R
Sbjct: 240 ANVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|299135068|ref|ZP_07028259.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
gi|298590045|gb|EFI50249.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
Length = 381
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/306 (11%), Positives = 93/306 (30%), Gaps = 10/306 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ L + L L+ +++V + + ++ + +P++ I P
Sbjct: 3 RLTLLSFLIVLVSLTGVIWVTQALRGID-LMTAQGQTVLVFLGITGLAIPVLALIIAPLA 61
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L+ L+ SE+++ A G+S W+ L PF+V ++++ + +A +
Sbjct: 62 MLLAVTHTLNRLSADSEVIVMNAAGLSPWRFLRPFMVSTVIVACLISFLAIFLAPECLRA 121
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+ + ++++ + + +D + I
Sbjct: 122 LRRWHTEIGADVLANVLQPGQFIRLDKLVLRVQERRPGGVLVGVFIDDQRNPAERIN--I 179
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGFQKFSEQFA 245
+ + L ++ D S ++ Q ++
Sbjct: 180 TAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQTYNYNAR 239
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
R E+I + + + + ++ L ++A + L R+ +
Sbjct: 240 ERFIGELISPPKDDAVA-QRSLGQFRAELHDRLLAGLYPFVFVILAFAF-LGPPRTTRQG 297
Query: 306 IIVAYG 311
A
Sbjct: 298 RNFAVS 303
>gi|294670275|ref|ZP_06735168.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308012|gb|EFE49255.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 370
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/349 (11%), Positives = 114/349 (32%), Gaps = 7/349 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K T + + + ++ + + + ++ A L + ++
Sbjct: 7 FVKELTFTAIGIFVVILAVLVSTQAINLLGRAAD-GRVAVDAVAALIGFWTLGMTPLLLV 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + V R SE+ + + G+S+ Q + P + ++ + + E
Sbjct: 66 LTAYISTLTVLTRFWRDSEMSVWLSCGLSLRQWVRPVLSFALPFAALVAAMQLSVLPWAE 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + K + + + + ++ + F DK
Sbjct: 126 LRSREFAEILKQKQELSMVEAGEFRTLGKKNGRVYFVGTFDTGSGIMKNLFLREQDDKGR 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ I + ++K L+ Y+YG IP + + ++ +
Sbjct: 186 ENIIFAKEGRFSLTDNKRTLELTQGYRYGGIPGEADYNQVSFEHLNLIISATPKIINPID 245
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
I N + + + + +PL + ++++A +S R+ +
Sbjct: 246 HRRTIPTAKLIG----SDNPQHRAELMWRLSLPLAALILSILAVPLSYFNPRTGHT-YNI 300
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I + +T +++ ++ L +P+ + + + +ILL+
Sbjct: 301 LFAIGFFLIYQNGLTFLRNAIENSKLG-FWTGFLPIHIIMLAAAVILLR 348
>gi|281180021|dbj|BAI56351.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 356
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +K + + + L + M L+A S+S R
Sbjct: 240 ANVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|261416539|ref|YP_003250222.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372995|gb|ACX75740.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326800|gb|ADL26001.1| putative membrane protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 478
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 1/166 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + L L G L V L +I + + S + + ++
Sbjct: 2 ILVRYVLKELIGPFLASLFGITFLFVVDFLVKILDNVLSK-GLPTSTVLEIFVLNLAWML 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP LV +++ F ++ E+ +A GIS L+ P ++ ++LL + V+ N +
Sbjct: 61 SLSIPMAVLVASLMTFGRMSGDQEITAVKAAGISPLSLMRPVLLVALLLSVLMVVFNNWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
++L+ D + Q +
Sbjct: 121 LPEANHRSVELMNAVSRKKPHVFIDAGRLITQFPGVQLWVNRIDPV 166
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + + LI A + + +R + Y + + + + ++
Sbjct: 348 QYMVEIHKKFSTAFACFIFVLIGAPLGI-MARKGGIGTGILYSLAFFVIYWICLIGGENL 406
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
I+ P A I I+ ++ IL+
Sbjct: 407 ADRLIVSPELAMWISNIIIGAVGILL 432
>gi|126663513|ref|ZP_01734510.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
gi|126624461|gb|EAZ95152.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
Length = 132
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 1/128 (0%)
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
++ + D + + ++ ++ + FY +P+ +
Sbjct: 1 MSYNFEPDDLTPVVYVAETMTIGQLNSFINKERARGNGNINTYLVVFYKKFSLPISAFIL 60
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
T+IA +VS R I +A GI F + + + + P A P I+
Sbjct: 61 TIIAVAVS-SMKRRGGMGINLAIGIVIAFTFIFFDKVFGTLAEKSSIPPFLAVWFPNIVF 119
Query: 348 ISLSILIL 355
L+ +L
Sbjct: 120 GILAAYLL 127
>gi|194426331|ref|ZP_03058886.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|194415639|gb|EDX31906.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|195183223|dbj|BAG66768.1| putative permease [Escherichia coli O111:H-]
Length = 356
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILLQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|190891136|ref|YP_001977678.1| permease [Rhizobium etli CIAT 652]
gi|190696415|gb|ACE90500.1| putative permease protein [Rhizobium etli CIAT 652]
Length = 403
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/363 (13%), Positives = 131/363 (36%), Gaps = 12/363 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 11 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 70 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILVRPILLLAAVISVFSFFVDN 129
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + +I + + + + +I + +++ K L + F +
Sbjct: 130 IVEPRAKTVARQMIAETYADLLSSVIEEKTFRKI---DEGLYVQISKRLAGRMLKGLFVA 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
D ++I+ + + ++ + +S + ++ +
Sbjct: 187 DERDPAYELIYYAKEGAVDDSGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTESR 246
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + R + + ++K + + + ++ V L + +++
Sbjct: 247 GQATLKASDRDLWFLFNP-DPNDKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-G 304
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL--IPVILTISLSILIL 355
+RS++ + + + + A L +P++ +I I +
Sbjct: 305 DARSHREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLYGLPIVSSIVSIIFLS 364
Query: 356 LQK 358
L K
Sbjct: 365 LHK 367
>gi|118474677|ref|YP_891476.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
gi|118413903|gb|ABK82323.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
Length = 353
Score = 69.7 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 112/352 (31%), Gaps = 5/352 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +Y YLK + + + ID + N + +
Sbjct: 1 MKLFSKYTGLVYLKYFIIIFMALELFYIGIDTLTNLKDFPKSANLQ----LIYLSLTALT 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + IV N+ R++ELV ++GIS L+ + S+++ + + +
Sbjct: 57 AVNYVLPISLVFALIVSKINMIRSNELVSFYSLGISKNTLILSPFIISLIITCLYIYLSS 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
LI N + + + + + +D
Sbjct: 117 TSFAYARDYQKSLINFQGFNKSSNSIFLKYENKFIYIDELYPAIGEANKIKIFETQDGDI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I K ++ + ++ G I + + K +
Sbjct: 177 IGQITAKKAKFEDNSWKLFDVDIISLPPRLELNATGYIENTQKELLILSGFKPRTIENIY 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ ++ S + I + I + + ++ Y LI PL M LI R
Sbjct: 237 QTNSNYSITDAIDSLRTLKNEGI-NLNKIKSTLYSLIFFPLFAPLMVLILYYYLPITGRF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + ++ ++ ++ F +G+++P ++P+I+ S +
Sbjct: 296 FNLALASFIYVIVTLCIWGVLFVLIRFSLNGVIIPEIGVILPIIILASFAGF 347
>gi|224825295|ref|ZP_03698400.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
gi|224602216|gb|EEG08394.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
Length = 366
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/356 (11%), Positives = 108/356 (30%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ + + T + + + ++ + + E + A L +
Sbjct: 2 VFQKSLTRELTFTAVSVFVVLLAILVTTQTINLLGRAAEGRIAN-EAVAALIGFWTLGLF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + +VV L R E+ + A G+S+ + P + ++ L I + I
Sbjct: 61 PLLLILTVFISVLVVLTRLWRDHEMAVWLASGVSLKDWVKPVLRFAVPLAILVGISSLLI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSI 182
E+ + + K + D + + + ++
Sbjct: 121 GPWAEQRSHEYAEILKQHEDVSAISPGIFKESHSSRRVYFVENFSGKNGSAANIFMQDMS 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + L+ Y D + Q
Sbjct: 181 KGKVASIFAKSGRIVTNEQGERLLLLENGRRYVGNPGEADYEVAEFARYSVVINDQPQFI 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ ++ S+K+ + + + + +P+ V + L+A +S RS
Sbjct: 241 PSGNSRQTMTSAALALSDKAGD------KAELGWRVSMPISTVVLALLAIPLSYFNPRSG 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + F+ +T+ +++ L A L P +L + +++ +L +
Sbjct: 295 HTYNLLLAL-LAYFVYQNALTLCRNWVLQDRLSAY-AMLAPHMLMLLVALGMLAYR 348
>gi|149178410|ref|ZP_01857000.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
gi|148842727|gb|EDL57100.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
Length = 392
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/394 (11%), Positives = 112/394 (28%), Gaps = 44/394 (11%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY L+ + +L+ + + + + VP
Sbjct: 1 MRLLQRYVLFELLRVFTLMITVLTVLLVFVGAFQQ----ATSQGLGVILVLKILPFIVPS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L+ VV+ + E+ ++A GI++ LL P + L + ++++ +
Sbjct: 57 MLPFTIPATLLLTVCVVYGRIAGDQEITAAKAAGINVLSLLWPSFILGGFLSLGSLILSD 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I EK + I + +K + I + + + + F
Sbjct: 117 QIIPWAEKNIENTIACELETIFLEKLRSQNQIHDPTSGISITV--MGVRNKTLLVPTFRY 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+KK + ++A L ++ + + + + + Q
Sbjct: 175 SPPNKKPVHLQAEEATLEFDLTNQQVILHISKGHIDFPGKPRFFVEKDTFPFPLPSQTTM 234
Query: 242 EQFASRSFYEIIKKMSFS--------------------------------------NKSN 263
+ S I ++ N+
Sbjct: 235 AKPRHMSVKSIKSELVDLSEKKNEFEFQRDIEVAMLLALGDFEHFQSPEVNTDLPQNQFQ 294
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ +T + L+ S+ +R + Y I+
Sbjct: 295 EKRQNKLKTALSSRFALSCSCFFFVLVGCPFSIAQARRQFLTSFFLVFLPILLFYYPIVL 354
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K G + P + + ++I +L +
Sbjct: 355 LAINLAKQGKIEPTWSLWAGNAGLLIVAIHMLRK 388
>gi|86357092|ref|YP_468984.1| putative permease protein [Rhizobium etli CFN 42]
gi|86281194|gb|ABC90257.1| putative permease protein [Rhizobium etli CFN 42]
Length = 393
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/359 (12%), Positives = 128/359 (35%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 1 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 60 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRTILVRPILLLAAVISVFSFFVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + +I + + + + + +++ + L + F +
Sbjct: 120 IVEPRAKTVARQMIAETYADLLSSVIEEKTF---RKLDEGLYVQISQRLAGRMLKGLFVA 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
D ++I+ + + ++ + +S + ++ +
Sbjct: 177 DERDPAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTESR 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + R + + ++K + + + ++ V L + +++
Sbjct: 237 GQATLKASDRDLWFLFNP-DPNDKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-G 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP-VILTISLSILIL 355
+RS++ + G+ + + A L I++ +SI+ L
Sbjct: 295 DARSHREARLHPMVSALGYAFALRWAAFYAANQIDTDPEYIAVLYALPIVSSIVSIIFL 353
>gi|71891828|ref|YP_277557.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71795934|gb|AAZ40685.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 373
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 126/351 (35%), Gaps = 2/351 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +Y K + L L ++ F L ++ + + + SI + +P
Sbjct: 2 IFTKYILKEIFRNQLIILTLLFLVCFCQKLIKMLSLVID-SGISIYLIFLCLGLNMPESG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IPF + +V F+ L+ +E++ + + + + S ++ T++ I+ +
Sbjct: 61 KLLIPFSVFLSVLVTFYRLHAHNEIIAMYSCAVDKYIFIRSIFFFSGIVATCTMINISWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L+ + K+N + + ++ +F + + +++ T+
Sbjct: 121 SPYCSSYQSKLLYKIKENINLVILSEKKFQPLATKYLILFSDSIQGNKLKNVFLSKTNPD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D II D D +L + + Y I + +Q
Sbjct: 181 KDNSMFIIITSDQGSVCRNPDGSRLIILKKGTYYEIYNKCELCQDVLITDFSQYQMLINS 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+FYE + + ++ + ++E + + L++ + + L S
Sbjct: 241 TIK-TFYEKNESVDHMFMHQLWRSNKSEMRAELHWRLTLLVSIFLMPMITTLLITVVSYN 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + +F + + +++S + P+ + + +S+ +L+
Sbjct: 300 YLINLLVTVFLYIIFFIFHILLRSCVLLDNINPIVWMWVINSIYLSIVLLL 350
>gi|218701755|ref|YP_002409384.1| hypothetical protein ECIAI39_3475 [Escherichia coli IAI39]
gi|227887687|ref|ZP_04005492.1| inner membrane protein [Escherichia coli 83972]
gi|301019930|ref|ZP_07184065.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|218371741|emb|CAR19592.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI39]
gi|227835083|gb|EEJ45549.1| inner membrane protein [Escherichia coli 83972]
gi|299882028|gb|EFI90239.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|307555075|gb|ADN47850.1| putative permease [Escherichia coli ABU 83972]
Length = 356
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G + +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGNPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|84622418|ref|YP_449790.1| hypothetical protein XOO_0761 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188578607|ref|YP_001915536.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425052|gb|AAW74089.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84366358|dbj|BAE67516.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188523059|gb|ACD61004.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 360
Score = 69.7 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S+
Sbjct: 119 LWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYMQTISADGKGLGKIFLQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + + L + + +
Sbjct: 179 QQNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A ++ +S
Sbjct: 239 TRLHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFAMLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|145637644|ref|ZP_01793299.1| predicted permease [Haemophilus influenzae PittHH]
gi|145269167|gb|EDK09115.1| predicted permease [Haemophilus influenzae PittHH]
Length = 161
Score = 69.3 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FTV++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTVIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI 149
E+ D+ + G
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKN 148
>gi|325971216|ref|YP_004247407.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
gi|324026454|gb|ADY13213.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
Length = 420
Score = 69.3 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/409 (11%), Positives = 117/409 (28%), Gaps = 60/409 (14%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+R+ + YL + L + F+ + I ++ L L +P +
Sbjct: 11 YRHIGREYLLSFLVAFFFFFFIFFINQILLIAQRIL-LKQVDYFSVLQLVLLSIPQFLLY 69
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
PF +L + +V +L+ +E++ R+ GIS+ + P ++ S+ + T L +
Sbjct: 70 TFPFSSLTASSMVIGDLSGNNEILAIRSSGISLKHVFIPIIIISLAFSMLTFLTADKALP 129
Query: 126 SGEKIGIDLIQQWKDNGD------KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
K +L + + I + ++ + + + + +
Sbjct: 130 WSTKKYRELYTDLMRDLPTLELMANSTNTIANTVMVNKGVEGNTVHDIILFETSSVRGGQ 189
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + + + ++ + LK + + + LN ++
Sbjct: 190 ILSAPKAEVSLYDLQSFIYQLELDNPLILKSETQGGWALSKAESAQFFLNFSGQIASIAS 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV-------------------- 279
S E+ + + + R + + L +
Sbjct: 250 ALPSQ--LSIKELQQNIQEHKIALQAEKKRYQEKVQTLELSLAELVDKAKTDAEVSVSHI 307
Query: 280 ------------------------------IPLMLVAMTLIAASVSLEFSR-SNQPRIIV 308
L L+ + SL F R + I
Sbjct: 308 EELEVQLKQLKDQKPINFYYQYYRAELHKKYALSAACFMLVFLTFSLSFFRVKHGRLIGF 367
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + ++ + S + P P +L +L LL
Sbjct: 368 GLSMLVAVVYWYLLFFAQMQIFSLSISPALLIWSPNLLMFFGGLLFLLH 416
>gi|320539289|ref|ZP_08038959.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
gi|320030681|gb|EFW12690.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
Length = 396
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/351 (11%), Positives = 124/351 (35%), Gaps = 7/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y + LK+ + L +++ F +L + + + + + L VP +
Sbjct: 34 IIIKYLVRETLKSQIAILFILLLIFFCQNLVRVLGDVVD-GDVPTNLVLSLLLLGVPKMA 92
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ +IL + +
Sbjct: 93 QLILPLSLFLGLLMTFGRLYTESEITVMHACGLGKRTLIIAAMILAILTSAVAAVNVFWA 152
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + K N + + +FIG K N+++
Sbjct: 153 NPIASSYQDVVVSEAKANPSIAGLVEGQFKPSQDGNAVVFIGNVKGSTFNNVFLAQLRTN 212
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ ++ + ++ + + ++ + ++ + +
Sbjct: 213 GTQRPSVVVAEHGNINPQKDGSQVVTLDKGTRFEGTALLRDFRITDFNNYKAVIGHRAVA 272
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ + A +F++ + + + +V M L+ +S+ R +
Sbjct: 273 VDNTQSEQM-----SMKTLWQSDDPDARAEFHWRLTLVVSVVLMALLVVPLSVVNPRQGR 327
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + + T ++S G L P+ + ++++ +
Sbjct: 328 V-LSMLPAILLYLIFFLLQTALRSNAGKGKLDPIIWLWGVNVAYFAIALAL 377
>gi|332976301|gb|EGK13158.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
Length = 455
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 56/148 (37%), Gaps = 1/148 (0%)
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
V++ + + +++PI + + + S ++ F+
Sbjct: 308 VLDNEPLVAKQTQAEDVISLPISPNSVYLLTRRAEDLSLTQLYDHKQFNASQGTRSL-EH 366
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
E F+ ++ P ++++ ++A S R++ + + + G + I +
Sbjct: 367 EVAFWQKLLSPFAILSLVIVACSFVFGSLRTHSLGLRIVVALIFGLLFSYIQDLTSFVSL 426
Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358
+ P+ L+P+I + L ++ ++
Sbjct: 427 ATGASPLLMVLLPIIASALLGFYLIKRQ 454
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY L L+ +LG L V + + +Y+ + P
Sbjct: 19 KIISRYVKTNALFAMLFAVLGLWALQIVFAYLAELEDISD--SYTYFDALTYILYKSPYF 76
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++Q P L+ ++ L SEL++ RA G+SI+++++ + + + I + +
Sbjct: 77 LEQFTPTGALLGAVIGLGLLANNSELIVMRAAGLSIYRIVSWVLQPAFIFVILALGINQY 136
Query: 123 IATSGEKIGIDLIQ 136
+ + + +
Sbjct: 137 VLPETNLMANQIRK 150
>gi|32266995|ref|NP_861027.1| hypothetical protein HH1496 [Helicobacter hepaticus ATCC 51449]
gi|32263047|gb|AAP78093.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 359
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 122/363 (33%), Gaps = 19/363 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++R+ YYLK LG ID+ + +++ + N + +
Sbjct: 2 IFRFVGVYYLKYFFIIFLGLEGFFLAIDMLKYVDELPDSANL----LILFLFYNGIFALT 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P ++ +I+ + ++S+L A+G S Q+L P +V S + + +
Sbjct: 58 YTLPISLVLCSILFYMAFLKSSQLTALMALGYSKRQILAPLLVISSVFIGGFIGLNTTSF 117
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ +I Q ++ + S+ Q +L E E T+
Sbjct: 118 AYAKEYAESIIYQQNTQNARE-----NLLLKSDNQYIFIRKLYPLLNEQARAEGIKVFTL 172
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---------IPIDKNSTTLNIPIKMD 235
D ++K+ + +A A N+ LK V + +
Sbjct: 173 DGEHKLKNYHEAQEAFFENNVWILKNVKSLEIASSLTLGEKALKITTSGEIEILKDFSSK 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ + S + I + + + + + Y L+VIP + I +
Sbjct: 233 VLETIAQDKPTASVIDAIASLRIA-HKQNVSSDKIRSILYALLVIPFFVPLCIAIISYYI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I I ++ + + +G++ P L+P+ + + + +
Sbjct: 292 PSLPRYGNLTFISFVCIIGALAVWGLFFSLSQLSVAGLIYPEIGLLLPMGILFVVFLWHI 351
Query: 356 LQK 358
Sbjct: 352 RYL 354
>gi|222824356|ref|YP_002575930.1| hypothetical protein Cla_1363 [Campylobacter lari RM2100]
gi|222539577|gb|ACM64678.1| conserved hypothetical integral membrane protein [Campylobacter
lari RM2100]
Length = 353
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/356 (13%), Positives = 111/356 (31%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +RY YLK+ ID N++ + N + L
Sbjct: 1 MNVFFRYISSLYLKSFFILFFSLTFFFVAIDFLVNFNKIPKSANLELLYILFLT----CS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + I+ FN+ R++E V A+G+S Q++ + ++ + +
Sbjct: 57 AVSYILPLAIVFALILCVFNMIRSNEFVSLYALGLSKNQVIFYPFLWALFFCFVYIGLNF 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++I+ + + I + ++ + + D
Sbjct: 117 TPFAYANEYKSNIIKTGLVSREGGNVLIKYDNKFVYIEKTSTNSLYNVKIFDVKNLDIKQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+T KK + + + + V + N K+
Sbjct: 177 LTQAKKAQFNGQSWELIDVKTIKVPDKLIVSQEGLKIKDFKSIKGLENFSPKILERISLV 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E S S + ++ + T Y L+ IP + L+ +R
Sbjct: 237 ESDPSYSISDALESI-LIFAKQDISTNTLRTSLYSLVFIPFFAPFLMLVIYYYFPITARF 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ S + ++ ++ ++ ILLP ++P+ + I + +
Sbjct: 296 FNLAFLAFVFFISVLSAWGLLFLLTRLSENEILLPEFGIMLPIFILICMGSWFYYK 351
>gi|260450919|gb|ACX41341.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
Length = 359
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/344 (13%), Positives = 115/344 (33%), Gaps = 7/344 (2%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ LK+ L L +++ F L I + + + L VP + Q I+P
Sbjct: 2 RETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMAQLILPLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ ++ L SE+ + A G+S L+ ++ ++ I + + +
Sbjct: 61 LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+++ + K N + Q +N +FI + ++ + + +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
+ L + + + ++ + ++ + + +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIG-----HQAVALD 235
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
RA + + I + + M L+ +S+ R + + +
Sbjct: 236 PNDTDQMDMRTLWNTDTDRARAELNWCITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLP 294
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + I T +KS G G L P ++ ++L+I++
Sbjct: 295 AMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 338
>gi|284799560|ref|ZP_06390217.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797388|gb|EFC52735.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 181
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 2/176 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGAKLGQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 60 RAYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+A + + ++ NG + W++ I +
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLKEKTASSTCAKCCPTIPCWASKFG 174
>gi|293604027|ref|ZP_06686440.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292817631|gb|EFF76699.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 369
Score = 69.3 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 119/355 (33%), Gaps = 6/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R +I+ + L + + N VLAA + I
Sbjct: 6 RSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAG-GNIGADVVLVLAALSTITALPTI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + + R SE+V+ A G+S+ L P + ++ + + + A
Sbjct: 65 LAVSIFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVALAVAGLTLVAAPW 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + ++++ D K + S+ +F + P + + F T +
Sbjct: 125 AYRQIGEYHERFEQRSDLSKVTAGQF-AESSGGSRVFFSEDPVTPTDELGNVFARETGPE 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK---MDGFQKFSEQ 243
++ A + N L ++Y P ++ ++
Sbjct: 184 WLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFNKYGLRLESKAGGDPI 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+R+ E K + + + + +Q + I +PL + + L+A + R +
Sbjct: 244 AEARAAAERSSKARTTMQLVEDNTDSSWSQVMWRISLPLAALNLALLAIPLGAVNPRLGR 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ G+ G + +I + +++ +G L L++ +L+++
Sbjct: 304 SGDLLIAGL-VGLLYMNLINLSRAWISNGKLSFGVGVWAIHGAVALLTVFLLMRR 357
>gi|320449377|ref|YP_004201473.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
gi|320149546|gb|ADW20924.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
Length = 368
Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/369 (11%), Positives = 102/369 (27%), Gaps = 20/369 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+R+ K L L LL + L + + A + VP ++
Sbjct: 2 TLYRHLLKESLPVLLLALLFLTAVYLFGFFYAGAR---WLEGVPLWKVARWLSYHVPGVL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P + ++VF L+ + G+ +W+ P V LL + + +
Sbjct: 59 VQVFPIALVTTTVLVFGRLSAEGAQFALLSGGVPLWRAALPLVGIGALLSGVALYLQERL 118
Query: 124 AT---------SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
++I ++ G + + + + +
Sbjct: 119 VPHYNEKVRVAWWDEIHTQGAGLFRLKGLQIPIGKGRNLYFEDFDMEKKEMVGVRIASFQ 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK--------VVEYQYGRIPIDKNST 226
E + D D ++ + + R+
Sbjct: 179 GEEGTFLFAERGSWEDKRITLRDYRFFRIDFQEIPRLETASDLLAQTRKVFRVVSQGKIM 238
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ + S + + + + + + + F + L L
Sbjct: 239 EVESDLSRARAIADYADTFSFGQDSLSEAWAKMRDPFLAPLEKWQARLEFHSKLALPLAN 298
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ L+ +V++ + + + Y + + +S G L P A +L
Sbjct: 299 LVLVLLAVAMALKYGRSTGLALGLSVVLALGYYGVFFLGRSLAGIGALPPEVGAWGANLL 358
Query: 347 TISLSILIL 355
+ L I L
Sbjct: 359 FLLLGIRAL 367
>gi|320195130|gb|EFW69759.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli WV_060327]
Length = 356
Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V+ + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVMLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLEHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|331659262|ref|ZP_08360204.1| putative permease [Escherichia coli TA206]
gi|315297643|gb|EFU56920.1| conserved hypothetical protein [Escherichia coli MS 16-3]
gi|331053844|gb|EGI25873.1| putative permease [Escherichia coli TA206]
Length = 356
Score = 69.3 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDLSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +K + + + L + M L+A S+S R
Sbjct: 240 ANVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|297624271|ref|YP_003705705.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297165451|gb|ADI15162.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 359
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 90/299 (30%), Gaps = 3/299 (1%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ A +P +P L ++ L++ SE+ +G+S Q L P
Sbjct: 46 GVGPALVARFLLYSIPSAAAMGLPLALLFAALLGITRLSQDSEIKAGLLLGLSPRQFLTP 105
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ +L+ + + +A + + ++ + + + + +
Sbjct: 106 ILLLGLLVSTVSFINNELLAPWSYRRAQEALKDILVQSPETLIEAGSFFTDALGRSVYLG 165
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ T I R ++ + +L + +Y + +
Sbjct: 166 SIAPGGVVRDVTVIQPGGTAGPSEVI--RAESGVLDEAAGVWRLNGIRMLRYRDGRVVLD 223
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ + + G S + + + + +N T + P
Sbjct: 224 APADEALLPVRGLSASSSTPPELTRLPLRELFARLRGTNPQDAPAEWTALHRKFAEPSAA 283
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
A L A S+ L R + + +F F+ Y ++ G G L A +P
Sbjct: 284 FAFALFALSIGLYSFRR-NFGLGLVSVLFLTFIYYATWSVSNLLGAQGTLPAAVAGWLP 341
>gi|269213540|ref|ZP_06158031.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146392|gb|EEZ72810.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 181
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 2/171 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFAIATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
IA + ++ NG + W++ + I
Sbjct: 120 WIAPVLSQKAENIKSTAI-NGKISTGNTGLWLKEKTASSTCAKCCQTIPCW 169
>gi|87306756|ref|ZP_01088903.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
3645]
gi|87290935|gb|EAQ82822.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
3645]
Length = 380
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/370 (11%), Positives = 113/370 (30%), Gaps = 30/370 (8%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ Y K LL ++L+ V G S + VP
Sbjct: 1 MRTIQTYVVWEVFKIFFLCLLATVLLMVVGGGVNE----GLKKGLPPSIILGMMPYFVPE 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++ IP L VF ++ ++E+V ++ GI+ +++ P +V + L T + +
Sbjct: 57 MLRFTIPGCLLFSICTVFGRMSASNEIVALKSAGINPIEIIWPVLVATYALSFVTFGLYD 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-------------QQDIFIGAKK 168
A +I Q D+ + + I +
Sbjct: 117 VCAGWSRPNMHRIIIQSLDDTAYSMLRTQKSFSMQGFSVRVKGVDDRRLIEPFITVQTPN 176
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--------QYGRIP 220
PE + + + + + + + + Y D +V + +
Sbjct: 177 GGPEFTLTAEEAELESNPETGALQVVCRNSFMEYGDGTNFSQVEPFVHQITQLGTLDQDL 236
Query: 221 IDKNSTTLNIPIKMDGFQK----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ L + + + + + ++++ + + +R + +
Sbjct: 237 NSASPAALTLRHIPAQIAREAKLLEDTINALHIGGDPEAIAYAAEGHQKRLWRLQAERQR 296
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ L + V++ S+ + + Y ++ ++ + G+L P
Sbjct: 297 RLSNGLGCFCFACVGIPVAMWRRTSDNVTTFFLCFLPILGVYYPLLVTGETMARDGVLAP 356
Query: 337 VAAALIPVIL 346
+ + ++
Sbjct: 357 Y-SVWLADVV 365
>gi|191172497|ref|ZP_03034037.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|300993119|ref|ZP_07180205.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
gi|190907165|gb|EDV66764.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|300305134|gb|EFJ59654.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
gi|324011925|gb|EGB81144.1| hypothetical protein HMPREF9533_04083 [Escherichia coli MS 60-1]
Length = 356
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/344 (11%), Positives = 97/344 (28%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +K + + + L + M L+A S+S R
Sbjct: 240 ANVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRLKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + ++ + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|301028100|ref|ZP_07191378.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|312965942|ref|ZP_07780168.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|299878817|gb|EFI87028.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|312289185|gb|EFR17079.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313646462|gb|EFS10924.1| hypothetical protein SF2457T_5377 [Shigella flexneri 2a str. 2457T]
gi|323171707|gb|EFZ57353.1| hypothetical protein ECLT68_3916 [Escherichia coli LT-68]
gi|323176176|gb|EFZ61768.1| hypothetical protein ECOK1180_4866 [Escherichia coli 1180]
gi|323181995|gb|EFZ67406.1| hypothetical protein ECOK1357_4673 [Escherichia coli 1357]
gi|323189857|gb|EFZ75135.1| hypothetical protein ECRN5871_1644 [Escherichia coli RN587/1]
gi|327250207|gb|EGE61926.1| hypothetical protein ECSTEC7V_5011 [Escherichia coli STEC_7v]
gi|332083262|gb|EGI88493.1| hypothetical protein SB521682_5141 [Shigella boydii 5216-82]
gi|332083699|gb|EGI88917.1| hypothetical protein SD15574_5322 [Shigella dysenteriae 155-74]
gi|332087092|gb|EGI92226.1| hypothetical protein SB359474_4825 [Shigella boydii 3594-74]
gi|332748941|gb|EGJ79364.1| hypothetical protein SFK671_4980 [Shigella flexneri K-671]
gi|332749216|gb|EGJ79637.1| hypothetical protein SF434370_4579 [Shigella flexneri 4343-70]
gi|332749777|gb|EGJ80190.1| hypothetical protein SF274771_5047 [Shigella flexneri 2747-71]
gi|332763114|gb|EGJ93357.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Shigella flexneri 2930-71]
gi|333009259|gb|EGK28715.1| hypothetical protein SFK218_0006 [Shigella flexneri K-218]
gi|333011251|gb|EGK30665.1| hypothetical protein SFK272_0204 [Shigella flexneri K-272]
gi|333011932|gb|EGK31317.1| hypothetical protein SFK304_5276 [Shigella flexneri K-304]
gi|333012148|gb|EGK31530.1| hypothetical protein SFK227_5241 [Shigella flexneri K-227]
Length = 335
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|222085453|ref|YP_002543983.1| permease protein [Agrobacterium radiobacter K84]
gi|221722901|gb|ACM26057.1| permease protein [Agrobacterium radiobacter K84]
Length = 391
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/363 (11%), Positives = 116/363 (31%), Gaps = 15/363 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ Y + L LL + +++ + + N + + SI A LA +P
Sbjct: 1 MKLFETYIVRRVGMMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATLILPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G ++ P ++ +I + +F+ V N
Sbjct: 60 IIPVVLPFALVIGITQTLTAMNSDSELTVMEAAGARRSIIIRPIMILAIAISVFSFFVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + + + +I + ++
Sbjct: 120 MVEPKARVAARQMVAEAYADLLSTVIEEKNFRRIEDGLYVQITQRMSGRILKGLF---VV 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGF 237
+ D +I+ + ++ ++ +S + ++
Sbjct: 177 DSRDPAFDLIYYAKEGAVDASGSSLLMRDGEVHRKTSDGDVSVIKFDSYSFDLSDMTQSR 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + RS ++ ++ ++ + + + LI+ ++
Sbjct: 237 GQATLRAGDRSLGFLLNP-DPNDADYKAKPSGYRSELHRRLTDWALPAIFALISLVIA-G 294
Query: 298 FSRSNQPRII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILI 354
+RS++ + + + F L + + I ++I +
Sbjct: 295 DARSHREARLHPMVSALTIAFALRWADFYAAN--QIETAPYFVGILYGINIAATLIAIFL 352
Query: 355 LLQ 357
L +
Sbjct: 353 LFR 355
>gi|323157530|gb|EFZ43639.1| hypothetical protein ECEPECA14_0587 [Escherichia coli EPECa14]
Length = 335
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMCTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|312973921|ref|ZP_07788092.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|310331455|gb|EFP98711.1| conserved hypothetical protein [Escherichia coli 1827-70]
Length = 335
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQNYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|88810478|ref|ZP_01125735.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88792108|gb|EAR23218.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 357
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/317 (8%), Positives = 84/317 (26%), Gaps = 16/317 (5%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
L + + L + + ++P + ++ L R SE+
Sbjct: 24 RLIRFLADAAS-GDIPANLLFTLLGLKALANLGTVLPASFFLAIVMAMGRLYRDSEMAAL 82
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
A G+ +L ++ ++ L + + E ++ + + + Q
Sbjct: 83 AACGVGPRELCRALLLLAVPLALLVGYLSLVFGPWAEGTAQRIVAEAQQSNRLQGVRPGR 142
Query: 152 WMQISNPQQDIFIGAKKILPENH-IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
++ + ++ + H I+ + + L
Sbjct: 143 FLDLGAGSAVAYVASIDAEGIMHGIFARAEQDGQPVLIAAARARREVDPETGARFLVLLN 202
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKM---DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
YQ +FS + +++ + + +
Sbjct: 203 GQRYQGVPGQRAWRVIRFGQHGLSLGGSEPAQFSAARDGLTSWQLWHSEDRAAWAQL--- 259
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + +PL+ + +TL A +S R + + + + + ++ + +
Sbjct: 260 -------QWRLSMPLVTLVLTLFALPLSKSAPRDGRYAK-LLSAVLVYVLYFNLLKVAQG 311
Query: 328 FGKSGILLPVAAALIPV 344
G
Sbjct: 312 LLSQGRYPVGLGLWWVH 328
>gi|297182283|gb|ADI18452.1| predicted permeases [uncultured Oceanospirillales bacterium
HF4000_13G19]
Length = 354
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/350 (11%), Positives = 113/350 (32%), Gaps = 18/350 (5%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
TT+ ++++ + + + ++ A R+P +Q I+P +
Sbjct: 2 TTVLVTFILVMVLVSGRFIKYLAEAAAGQ-IAADALFLVMAFRLPEFLQMILPLSLYIAI 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++V ++ +E+V+ RA G +++ +V +++ L + G+ +
Sbjct: 61 LLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIF 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK------ 189
++ K + + + A+ + E + E+ ++
Sbjct: 121 EEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLENVFVADASFSSEEAGRLL 180
Query: 190 -IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ R + ++L +YQ D G ++ S +
Sbjct: 181 TVWARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVR 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + + + L + M L A +S R + + +
Sbjct: 241 GRSTLDLIDDGGNQAMAELA-------WRWSLVLTVPIMCLAAVPLSRVNPRQGR-FLRM 292
Query: 309 AYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVILTISLSILILL 356
+ + ++ M+S+ G P +++ + L ++ +L
Sbjct: 293 IPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFMLY 342
>gi|255020899|ref|ZP_05292955.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
gi|254969690|gb|EET27196.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
Length = 372
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 104/305 (34%), Gaps = 3/305 (0%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ L+ ++ L + ++ + L+++ +Q+ + L P ++ ++P
Sbjct: 8 ILRDLLRVFVFGCLLVLGILAIGQLSQLLSQVAS-GQLPLGVTLQLLGLATPTLLVTVLP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+VF NL R++E++ R+ G+S+ LL + +++ + L+ + + +
Sbjct: 67 LAFFFALYLVFSNLYRSNEMMAIRSAGLSLLDLLRALALPILVIALLEALLSLSWSPAAQ 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + + + + +I +++G E+ E F + +
Sbjct: 127 RQLQAESLRLANAAAEALIQPGSFARI-AGGHILYVGQSAPGSEHRYREIFVDLGGKGEP 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
I ++ + + L + ++Y P L+
Sbjct: 186 DIATAAFGEIRKDQDGGIALVLIQGHRYLGQPGTAGFKILSFVHYRIALAAPQGSSDQGI 245
Query: 249 FYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + R + + ++ PL++ + L+A ++ R
Sbjct: 246 HWAALDLPQVLQALREPRYARHALAELEWRLIWPLLIPVLALLAIPLAFGGPRGAGRASG 305
Query: 308 VAYGI 312
GI
Sbjct: 306 ALLGI 310
>gi|261401002|ref|ZP_05987127.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|269209119|gb|EEZ75574.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
Length = 371
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/352 (9%), Positives = 106/352 (30%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNDNKRTLELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + L V L+L + + + +
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPR----GG 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ ++G + L I+ ++++++L
Sbjct: 296 HTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILL 347
>gi|86151428|ref|ZP_01069643.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153749|ref|ZP_01071952.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|315123881|ref|YP_004065885.1| hypothetical protein ICDCCJ07001_285 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841775|gb|EAQ59022.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842710|gb|EAQ59922.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|307747250|gb|ADN90520.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
gi|315017603|gb|ADT65696.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 352
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 101/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKLQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|146329237|ref|YP_001210036.1| hypothetical protein DNO_1152 [Dichelobacter nodosus VCS1703A]
gi|146232707|gb|ABQ13685.1| conserved hypothetical membrane protein [Dichelobacter nodosus
VCS1703A]
Length = 349
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/347 (8%), Positives = 95/347 (27%), Gaps = 13/347 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +RY + L + + ++ + + ++ + + S++ L + I+
Sbjct: 5 IFYRYMMREISALFLAITMILLTIIISFRFSSLLSRALD-GSVSLAAIGQLLIFQTANIV 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P ++ +++ L E+ A G S L+ P + + L + V+ +
Sbjct: 64 VILLPVAFILASVMTLSRLYGDCEINALFAGGCSKKHLMQPILYLVLPLAVILVINTLYL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L+ Q + + ++ + I +
Sbjct: 124 LPHVFERWDQLMAQSRQEALYSFFTPNQFQHLNAHNTLYTGDKINNGFQPFIIIQNDNNE 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + + +
Sbjct: 184 YSMLWSKRGEIQKNQPEHFLHLTQGNRAAWRD-----------DFQPQNCLFSQFAHGSL 232
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S+S +++ + + +F + L +V + ++ R +
Sbjct: 233 HLSQSPPSAQQRLRSIATGALNQSLAHRAEFQKRLNPALAVVIFSFAVPLLAHTRPRQGR 292
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ ++ I G + ++ I G + + +
Sbjct: 293 YQRLLPAFILFG-IYINLLDIALKMFSRGQIPFLIGGWGIHFAAAFI 338
>gi|283955738|ref|ZP_06373229.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792693|gb|EFC31471.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1336]
Length = 352
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/354 (11%), Positives = 102/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCVYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I+ M++ I+ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAIVTFIAFVVTLMIWGILFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|238023199|ref|ZP_04603625.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
gi|237865582|gb|EEP66722.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
Length = 368
Score = 69.0 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/358 (10%), Positives = 113/358 (31%), Gaps = 13/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + ++ + + + ++ L +
Sbjct: 2 IYHRQFIKETTLTAIAIFFVVLAILVFTQGINMLGRAAD-GRVAVDAVTTLIGFWTLGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ I + G+ + + + P + ++ L + + +
Sbjct: 61 PLLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLKKWIRPVLTFALPLAVLVATMQISV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDFTS 181
E + + K + + ++ ++
Sbjct: 121 LPWAEYRSREYAEILKQKQNLSLVQAGTFSELGKKDGRVYFVETFDTDNGIMKNLFIRDI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ + + ++ + L Y D + + + + ++ K
Sbjct: 181 DETGRDSVVFAKEGRFDLSNNKRTLVLTNGYRYSGIAGRGDFDQVSFQELNLIINTTPKV 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ R + + N + + + + + +P+ ++ ++L+A +S +R
Sbjct: 241 VDPIDHRRTIPTAQLI-------GSSNPQYQAELMWRVSLPITVLLLSLLAIPLSYFNTR 293
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S V + + +T+++ + G + L+P+ L + I +LL+
Sbjct: 294 SGN-SYHVLLAVGFFLVYQNGLTLLRDAVEDGKINFWLG-LLPMHLLMIACIWVLLRM 349
>gi|291296717|ref|YP_003508115.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471676|gb|ADD29095.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 338
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 19/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L +L + + DL + + + A RVP +
Sbjct: 2 LPRYLLRETLSLYLLGVLLFVG-LITFDLLSSLSGAFLRARTPVGEIVQMVAYRVPHTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL + A GI + P ++ ++ +G +L +
Sbjct: 61 IALPLGLVFALLVALARWIRQSELKAAYAAGIPPRVFIGPVLLLALAVGAVVLLNEGWLK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ L + + + + PQ A++I P +
Sbjct: 121 PIAQERFEALQYKIYYGSEPS---GVLTERTYTPQGLGIYYAQRIYPPPEGQTGSRLEGV 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
A+ + + +L+ + L P+ + E
Sbjct: 178 RVVESGGSVWSAERGVWVSGAWRLQNAYRVDPSGQIFQEAEHPLPFPVGVQPKAVSYEAL 237
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + A+ + V + +A + L S
Sbjct: 238 RMPEL-----------HAVASADPAAQFPLARRYANAVGTVVLAWLAIVIGLSLRES--- 283
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ F +T+ T+ F + +L A +P I+ L++L +
Sbjct: 284 AWAFIAVVGLIFGYWTLFTLSAQFARFDLLGAY-GAWLPNIVYGGLALLGTWRL 336
>gi|86149085|ref|ZP_01067317.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597305|ref|ZP_01100540.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|218561972|ref|YP_002343751.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85840443|gb|EAQ57700.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190366|gb|EAQ94340.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359678|emb|CAL34464.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284925585|gb|ADC27937.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315928386|gb|EFV07700.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930530|gb|EFV09573.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
Length = 352
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 101/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|171059277|ref|YP_001791626.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
gi|170776722|gb|ACB34861.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
Length = 364
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 109/356 (30%), Gaps = 11/356 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K ++ L+ + +V + L Q L S +L + ++
Sbjct: 7 LRKELSRSFGGTLIVILTIVLTMMLIRTLGQAA-LGRVSPQDVVLLLGYTSLGHLPTMLC 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V + + SE+ I A G+S+ + + P V + F ++ +
Sbjct: 66 LSLFVAVVSTLTRMYGDSEMTIWFASGVSLTRFVRPVVRFGTPIVFFVAALLLFVWPWSN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSITID 185
+ +L +++ D + + SN Q+ FI + D
Sbjct: 126 RNISELRGRYEQRSDLSRVAPGQFQTSSNGQRVFFIDKQSPDAGTGRNIFILDQRVDRES 185
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ R D A + ++ L + + D + + A
Sbjct: 186 VTSAQTGRIDLPDADDTHRRLVLDNGARTDLDLKGETR------TISRFDQYSIRISEKA 239
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
E K S + + + + + + + L + + L+ ++ RS
Sbjct: 240 LTRIDEPPPKARSSFDLLLSSDPKVRAELAWRVGMVLGGINLMLLGLGLAQGGPRSGS-G 298
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + S + + +I++ +++ S L A L +L + G
Sbjct: 299 WTLLLALLSFVVYFNLISLSQAWVASARLSLGTALASVHGGVFVLCAALLWWRVRG 354
>gi|157414610|ref|YP_001481866.1| hypothetical protein C8J_0290 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385574|gb|ABV51889.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|315931610|gb|EFV10576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 352
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 101/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|194364315|ref|YP_002026925.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
gi|194347119|gb|ACF50242.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
Length = 360
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/361 (11%), Positives = 108/361 (29%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY ++++ L L+ +++ L +I + + +
Sbjct: 1 MLK-LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ +LL P ++ + +
Sbjct: 59 AYLPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPKRLLRPLLMLVLPVVALVGACS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ +I + + + + + N
Sbjct: 119 LWLGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTRLGRVFLQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++L + + L + D
Sbjct: 179 QKDDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGL--DYRLATFARNDVALPD 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + + E++ + A+ Q + + PL+ +A L+ + R
Sbjct: 237 GAQTRTENDPELMPTTKLFGDA----RPEAQAQLHRRLAPPLIALAFALLTVPLGRSSPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ ++ + + + ++ I + +G + + + L+I + D
Sbjct: 293 QQRYGRMM-LALLAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLGLAIWM--YARD 349
Query: 361 G 361
G
Sbjct: 350 G 350
>gi|309378516|emb|CBX22869.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 371
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/352 (9%), Positives = 106/352 (30%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + N+ + ++ + K + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + L V L+L + + + +
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPR----GG 295
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ ++G + L I+ ++++++L
Sbjct: 296 HTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILL 347
>gi|323162060|gb|EFZ47932.1| hypothetical protein ECE128010_1825 [Escherichia coli E128010]
gi|332346340|gb|AEE59674.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 335
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|323166625|gb|EFZ52384.1| hypothetical protein SS53G_3091 [Shigella sonnei 53G]
Length = 335
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 103/311 (33%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + ++ RA + + I +
Sbjct: 190 DFRITDFQDYQAIIGHQAVVLDPNDTDQM-----DMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|86133416|ref|ZP_01051998.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
gi|85820279|gb|EAQ41426.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
Length = 483
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 3/187 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L + L + ++ + L + + S+ +
Sbjct: 1 MKILDKYILKSFLVPFIATFLIVLFVLVMQALWQAFENIAGK-GISVIFILKFLYYTTLM 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II Q +P L+ +I+ NL E +++ G+S+ +L+ P + +I L L +N
Sbjct: 60 IIPQALPIGVLLSSIMALGNLGENYEFAAAKSAGVSLQRLVRPIGILAIALSGLNFLFLN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L K + +K E ++ +
Sbjct: 120 NVFPYANLKQRNLYLNIKKKKPALALVPGSFNADIP--GYQIKFDEKYGEEENLLKKVWI 177
Query: 182 ITIDKKN 188
+
Sbjct: 178 YDLTSNR 184
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
N +T++Y + L V + I A + R + + I + +
Sbjct: 357 WNRKMVNFYDTEYYNRVAFSLSCVILFFIGAPLG-SIIRKGGFGLPMILAIAVYVLYFFT 415
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
T K+ + + + + I IL I L+IL+
Sbjct: 416 NTFGKNLAEESSITSILGSWISAILMIPLAILL 448
>gi|333010222|gb|EGK29655.1| hypothetical protein SFVA6_0010 [Shigella flexneri VA-6]
Length = 335
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|313680813|ref|YP_004058552.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153528|gb|ADR37379.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 346
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/347 (13%), Positives = 106/347 (30%), Gaps = 15/347 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + L L ++L+ L E+ + +S A RVP
Sbjct: 1 MNTLSRYLLREVGAYLLGGLAVVVLLLLGGVLFEVLAPLLARGADPLS-IGQYLAHRVPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + +P L ++ + SEL + A GI ++L V LL + +
Sbjct: 60 ALVRGLPIAYLFALLLALSRMAEDSELKVLLASGIPRERVLGVLVGFGALLALVGFVAGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++++ + + + + + D
Sbjct: 120 SWVPRELQRANQVLREAILAKPRALLQPGTFFRDAYGRTIYVGQV-----------DGQG 168
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ A ++ L + + + + ++
Sbjct: 169 FGDVRVLSEGEVLTAKRGRFEPGRLVLDAGMRVTFDGSRPRTITEFERGLLPLEDLAVSP 228
Query: 242 E-QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ A E+ ++++ K ++ T ++ P VA L A +++
Sbjct: 229 PTKPADLPLAELRRRIAEYKKFGRPYHAE-ATAYWRKWAEPAASVAFALFAVALAFWML- 286
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+ + + F Y ++ + G+ G+L P AA P +L
Sbjct: 287 GGSRSLGMVGVVTLTFFYYATWSVFRIMGEQGVLAPWFAAWGPDLLY 333
>gi|309784106|ref|ZP_07678748.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|308928099|gb|EFP73564.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 335
Score = 68.6 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAIILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|312795337|ref|YP_004028259.1| hypothetical protein RBRH_03151 [Burkholderia rhizoxinica HKI 454]
gi|312167112|emb|CBW74115.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
HKI 454]
Length = 365
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 105/354 (29%), Gaps = 11/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL R + T L + LV + I VL + +
Sbjct: 2 ILERSLQRELAYTAGAVFLVLLTLVLTTMMIRIVG-FAASGQIDPRDVVVLIGLTMISYV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ + G+S+ +L+ P + + +
Sbjct: 61 AVMLIATLFVSILFVLTRWYRDSEMVVWLSCGVSLTRLIKPIATFAAPIVVLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++++ + + + +N + ++
Sbjct: 121 WPWANEQSKLIRERFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQGRVENVFVTSTE 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ ++ + V L+ Y D ++
Sbjct: 181 NGKVNVVVSKTGHTEIHPNGDRFVVLENGRRYDGEPGKPDFRIMEFARYGVKIQSRQLVN 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + S + N +F + +PL + + L+A ++ + R
Sbjct: 241 RPTTTSLP--------TATLLREPNPTHLAEFAWRAGLPLTALNLMLLAIPLAYQNPRRG 292
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ I + + ++ +++++ + G + V L ++ ++ + +
Sbjct: 293 RT-INLVLAVLIYLTYSNLMNLVQAWIEQGKVAFVPGLLGLHVIVSAIVVFVFW 345
>gi|78776668|ref|YP_392983.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
gi|78497208|gb|ABB43748.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
Length = 359
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/348 (12%), Positives = 115/348 (33%), Gaps = 6/348 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +Y++ + LL ++ + D ++ + S + + + I
Sbjct: 4 FKYITFHYIRYFIIILLALVLFLVGFDYMGNTEKL----DISANLFLIYVVYKTFYAIDM 59
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV-INPIA 124
++P + I L R++ LV ++G S +L PFVV + + + +
Sbjct: 60 LLPLSLIFAMISTKIFLIRSNALVSFYSLGYSRIDILKPFVVVATAMITLFISLHSISNF 119
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++ + + + + + + + + D + +
Sbjct: 120 ARADEFAKNIRKNAQYLSPTRDLFFTYKDKFVYFSKLLPLQESAENIRVFSFVDNSLKEV 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ +R DA L + + K + G K++ + + + E
Sbjct: 180 LVAKRASYRNDAWLIKMADIITKPDDISFDSLGIKVTQKDNLEILQGFRPKMLDQVYEGK 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + I NI + ++ Y + V P + ++ +I R
Sbjct: 240 VNFSIKDAIDAYWLLRDQNI-NTNIVKSALYKIFVYPFFVPSLVVIIFFFVPVSVRFLNV 298
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I S M++ + + + ++P +L ++
Sbjct: 299 SLFSFAAIISSLMIWAFLFSLVELSNHKTIPSELGIVLPNLLLFLFAL 346
>gi|193214339|ref|YP_001995538.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
gi|193087816|gb|ACF13091.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
Length = 455
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 1/149 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K ++ ++ + + + L ++ ++ L ++ +
Sbjct: 3 ILTRYILKSHIGPFVFGFATVVFVFLMQFLARYLDRFVGK-GLEMNVIIELIVLQIAWMA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F N+ +SE+ RA GIS+ +++ P +V +L N +
Sbjct: 62 VLAAPMAVLISTLMTFGNMVNSSEMTAIRASGISLLRIMIPIIVAGAILTYLMERFNNIV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
L+ + +
Sbjct: 122 LPEANHQAKVLLMDISRAKPSFGLEENVF 150
Score = 59.3 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ S + + + EN I ++ I + ++
Sbjct: 218 NPENHSYRRVNFETHKVVFEATGYGFERTDENSISRGDRELSATTMMDICDSLEERVSKS 277
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN- 260
Y+ + + R P +S I D + R + + + ++ +
Sbjct: 278 YSAINDTRDAELSRIMRTPTGYDSLPHAASIVPDSLDILANIPPKRRYSVLDRAITQARV 337
Query: 261 ------------KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
SN + + + IP + + + + +R I
Sbjct: 338 HLNEAHHQYFSINSNTRLINKYLVEVHKKYAIPFACLFFVFVGVPLGV-LARRGGFGIGA 396
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + + + I+ P A + ++ + ++L
Sbjct: 397 GLSLIFFLLYWVFLIGGEKLADRDIVSPAIAMWMGNVVISVIGAVLL 443
>gi|194333657|ref|YP_002015517.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
gi|194311475|gb|ACF45870.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
Length = 444
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K + L+ L + + + + + + + L ++
Sbjct: 1 MKIVDRYILKAHAAPFLFAFLTIIFVFTLQFFSLFIARFVGK-GLDLLVISELILLQISW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P LV ++ F NL SE+ + R+ G+S+ +++ P ++ + +L N
Sbjct: 60 MVVLAVPMAVLVSTLMAFGNLTNRSEIAVMRSGGLSMSRVILPVLIAASVLAFLVERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L++ +
Sbjct: 120 VVLPEANYQAKMLLRDITKTKPSFGLTENAF 150
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 8/96 (8%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
++ + +++ + + L+ A + + R + + + + +
Sbjct: 340 ADRRMYNKYMVEYHKKYALSFACIIFVLVGAPLGVLAKR-GGFGVGAGLALAFFVLYWAL 398
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + +L P A + IL + + +
Sbjct: 399 LILGEHLADRNLLHPGFAMWLANILMAFIGGVAYWR 434
>gi|205356037|ref|ZP_03222805.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346161|gb|EDZ32796.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 352
Score = 68.6 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 102/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|291277020|ref|YP_003516792.1| inner membrane protein OxaA [Helicobacter mustelae 12198]
gi|290964214|emb|CBG40063.1| putative integral membrane protein [Helicobacter mustelae 12198]
Length = 354
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 115/354 (32%), Gaps = 6/354 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+ Y + + + L I ID + +Q N + A +
Sbjct: 2 FFYLGRQFFRFILIVFSALEIFFISIDSLKYLDQFPSSANL----IVLFFAYDFLYALNY 57
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L+ I+ + NL ++++ A+G + Q+L P S+ V +
Sbjct: 58 TLPISILLATIIFYLNLVKSNQYTAFLALGYTRKQILAPVFFISLTFTFLYVGLNATPFV 117
Query: 126 SGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++ Q+ N + + + I + + + + +
Sbjct: 118 YAQERAEAIMSQENFTNITEDLLVKYENNYVYFQKLYPLIKRAENIKVFELDKQGRLQSF 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ I + + + ++ + G + + + + +
Sbjct: 178 AQAKDAIFLHNYWVLSHASISKVPEETTLGKAGLEVSEVDKLKILKGFRPKILDTIYQNK 237
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S S + I+ + ++ ++ + Y I+IP + ++I + SR +
Sbjct: 238 PSVSIIDAIQSLIIL-QNQDSNSEKIRAILYAFILIPFFVPLTSIIIGFYAPTLSRYSNL 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ I +++ + SG+L P LIP L LS+ +
Sbjct: 297 ALLGFMFIVLALVIWGLFFAFGKLSISGLLPPEIMMLIPFGLLCVLSLFYFKKI 350
>gi|311747143|ref|ZP_07720928.1| membrane protein [Algoriphagus sp. PR1]
gi|126578851|gb|EAZ83015.1| membrane protein [Algoriphagus sp. PR1]
Length = 604
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 2/154 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + ++ L L ++ +++ + +++ L + V
Sbjct: 1 MKK-LDKLILGSFIGPFLLTFLVVDFILLTVNMLKYFDEIFGK-GLDFWIYMELISYFVI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P L+ +++ F NL EL ++ GIS+ + + V I+L L
Sbjct: 59 SISPMALPLAVLLSSLMTFGNLGEHFELTAIKSSGISLIRAMRSIGVFVIVLSFAAYLSN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
N + L+ + +
Sbjct: 119 NHLVPKVNLKTFSLLYDIRMKSPALDIKEGVFYN 152
Score = 63.2 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 1/147 (0%)
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+KV+ + ++ G SR+ ++
Sbjct: 425 EKVIRTKPLTAEEKAKIDSVMFGKNYIGNAITIASNNSRNLKNSFDVKKAQIDTDEREYR 484
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R E +Y + M +I A + + + V I + Y + + +
Sbjct: 485 RYEISWYQKYTQAFACIVMFMIGAPLGAIIKK-GGLGMPVLISIIFFIVYYMLTMTGEKW 543
Query: 329 GKSGILLPVAAALIPVILTISLSILIL 355
K GI+ P+ + I + L
Sbjct: 544 AKEGIIDPLIGTWFSNLCLIPFGLFFL 570
>gi|269467941|gb|EEZ79676.1| permease [uncultured SUP05 cluster bacterium]
Length = 373
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 108/354 (30%), Gaps = 12/354 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ L + ++VF L + NQ +S L + ++ + I+
Sbjct: 2 RNVLVMLSAVFIIIGLVVFGNQLVLVINQ-SLKEGIPVSDLLPLISFKMIRDVPLILSLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ I+ L + SE ++ ++G+ Q + I + IF + + +
Sbjct: 61 LFLAIILSVSRLYKDSEAIVMNSLGLGDKQFMLFIQPIVIAIFIFILFLTTYAVPWSKHQ 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
++ + ++ + + + + + K E E N
Sbjct: 121 RNMVMDRTENASEFSFIKEGEFQEFKDGDVVFYASKVKAGGELGQQEMEEIFIYTLSNDE 180
Query: 191 IHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
A A Y D ++LK Y +K ++ +
Sbjct: 181 SIITLAKQANKYTDGITKSVYLRLKDGTRYHGFPGDTNKKILNFDLYDLKIIDGDKEKTK 240
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ E + + + P+ ++ ++++ + R +
Sbjct: 241 DTIVKVEGQDTFDLFRSDGLKEVSE----LQWRLSQPISVLILSILGILLGKSSPRGGKN 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V +G+ + + + KS + G + P+ +L + + + L +
Sbjct: 297 -LGVLFGVVVFILYNNALLVAKSNLEQGSVHPIVGLWWVHLLMVLIIFIFYLYR 349
>gi|325499819|gb|EGC97678.1| hypothetical protein ECD227_3916 [Escherichia fergusonii ECD227]
Length = 335
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 103/311 (33%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ GI + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILALFTGIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + + RA + + + +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMTTLWNTDSDRARAELNWRLTLIFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I +
Sbjct: 304 NLIYLALAIAL 314
>gi|315057734|gb|ADT72063.1| Permease YjgP/YjgQ [Campylobacter jejuni subsp. jejuni S3]
Length = 352
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/354 (10%), Positives = 101/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|114704779|ref|ZP_01437687.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
gi|114539564|gb|EAU42684.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
Length = 398
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 116/357 (32%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F+ L +++ L+ ++V+++ + + + + +A +P +
Sbjct: 3 LLERYIFRRALISSVGSLVSLALIVWIVQALSRID-IVKTSASAAGNILWIALMLLPDLA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ I V LN SE + A G S+ +L P + + GI + V + I
Sbjct: 62 AGVVPFAILIGAIQVLNGLNADSERAVIAASGASMRVILRPIIYLGLAGGILVLTVAHGI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I+ + + ++S + + E+ +D
Sbjct: 122 GPLASSAFYNGIRSINVDTITLFLRPGRFERVSPDLVISVGESNGSIIESLFIQDTR--D 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + L + L ++ + + + ++
Sbjct: 180 PNLDLTYFAAEASILDQGDQSVLMLFDGQLHRKPKTGNSVSVIEFQTYAFDLSNLRPADD 239
Query: 244 FASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ ++ R + L VA L A + +
Sbjct: 240 GDWTRTSELSTLTLIAPDPDDEIYQKKPGRYVEEATDRFTSWLYCVAFALWAIVCAGQPQ 299
Query: 300 RSNQPR-IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ Q + G+ L + + S + + L+P+ + ++LI+
Sbjct: 300 TNRQASNAAMTLGLAGAVALKAVAFLALSMVSPNPSMAIFVYLLPIAACVFNALLIM 356
>gi|241203949|ref|YP_002975045.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857839|gb|ACS55506.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 393
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 116/356 (32%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 1 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + + +F+ V N
Sbjct: 60 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAAISVFSFFVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +I + + + + + I + + D
Sbjct: 120 VVEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADER 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D I+ +S + ++ + +
Sbjct: 180 DPAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPDGNVSVINFDSYSFDLSDMTENRGQA 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + R + +I ++K + + + ++ V L + +++ +R
Sbjct: 240 TLRASDRDLWFLINP-DPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-GDAR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILIL 355
S++ + + + + A I++ +SI+ L
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353
>gi|289209274|ref|YP_003461340.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
gi|288944905|gb|ADC72604.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
Length = 386
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/352 (12%), Positives = 103/352 (29%), Gaps = 7/352 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R+ + T + ++++ L + + E + + A I +
Sbjct: 23 RFIARELWLTQAAVSVVLLLVIIGGVLARVLRDVAE-GRLPVDFLPGMVAFGAFKGIVFL 81
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P + ++VF + R SE+ +A G+S L + I ++++ +
Sbjct: 82 WPVALFLAFMLVFGRMQRDSEMTALQASGMSFAALYRALFWVAAPAAILLLVLMTMVVPR 141
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E L + D +++ Q F + E F +D
Sbjct: 142 TEAQIDQLRDLAEQRSDLVGIAPGRFLRSRVGDQVFFAERMSA-DREALLEVFIYREVDG 200
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ +I + A L Y+Y P + L +
Sbjct: 201 EAQITVAERAVPDPGAEGSGFLLLENGYRYVGEPGTASFRMLEFERLRTQITEPDPGTRR 260
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S + A + + + +PL ++ + L+A ++ R+ +
Sbjct: 261 ASLNAQPTPA----LWAQRDDPEARAELEWRLAMPLSILVLALLALPLAQVPPRTGRYA- 315
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ I + + + + G L + L +++ K
Sbjct: 316 RIPAAIGVYVLYANFLILGQGQLADGRTPLALGLWWAHGLMLVLWVVLAWHK 367
>gi|297171529|gb|ADI22527.1| predicted permeases [uncultured Oceanospirillales bacterium
HF0500_09M11]
Length = 354
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/350 (11%), Positives = 112/350 (32%), Gaps = 18/350 (5%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
TT+ ++++ + + + ++ A R+P +Q I+P +
Sbjct: 2 TTVLVTFILVMVLVSGRFIKYLAEAAAGQ-IAADALFLVMAFRLPEFLQMILPLSLYIAI 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++V ++ +E+V+ RA G +++ +V +++ L + G+ +
Sbjct: 61 LLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIF 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK------ 189
++ K + + + A+ + E + E ++
Sbjct: 121 EEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLESVFVADASFSSEEAGRLL 180
Query: 190 -IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ R + ++L +YQ D G ++ S +
Sbjct: 181 TVWARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVR 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + + + L + M L A +S R + + +
Sbjct: 241 GRSTLDLIDDGGNQAMAELA-------WRWSLVLTVPIMCLAAVPLSRVNPRQGR-FLRM 292
Query: 309 AYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVILTISLSILILL 356
+ + ++ M+S+ G P +++ + L ++ +L
Sbjct: 293 IPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFMLY 342
>gi|257459022|ref|ZP_05624141.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
gi|257443407|gb|EEV18531.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
Length = 348
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/356 (11%), Positives = 108/356 (30%), Gaps = 10/356 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +Y YLK L+ ID+ N + A +
Sbjct: 1 MKLYVKYAALSYLKYFFILLIALECFYVGIDVLTNLKDFPSSAN----TALLYIALTAAV 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + I++ FN+ R++ELV A+G+S L+ P + ++ + + + +
Sbjct: 57 ALSYTLPLSLIFALILMGFNMIRSNELVSFYALGVSKNALIIPPFLIALAITASFIALNS 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
K +L GD ++ I ++ +
Sbjct: 117 TPFAYALKFQKNLTDLSPTGGDMFLKFEGKYIYIKALNGKNANDITIFNIGDNSVASRSH 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + N ++ G +
Sbjct: 177 ASSGE-----YAGKIWHLRDVNTTTLPTQLKLGGSGLKSKLSAQSEALKGFDPSSIASVY 231
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + ++ + + + + + Y +I PL L+ R
Sbjct: 232 DTSNVYSIRDALRSIRTFSHQGV-NISTIKASLYNMIFFPLFAPLAVLVLYYYLPVTGRF 290
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + + ++ ++ F +G+++P ++P+I + + ++ +
Sbjct: 291 FNLALLSFGFFIATLCAWGVLFVLIRFSLNGVIIPEFGIIVPIIALLGFAAFLVFK 346
>gi|116251335|ref|YP_767173.1| hypothetical protein RL1569 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255983|emb|CAK07064.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 393
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 116/356 (32%), Gaps = 5/356 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 1 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 60 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVISVFSFFVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +I + + + + + I + + D
Sbjct: 120 VVEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRMAGRMLKGLFVADER 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D I+ +S + ++ + +
Sbjct: 180 DPAYELIYYAKEGAVDDTGTTLIMHQGEVHRKTPDGNVSVINFDSYSFDLSDMTESRGQA 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + R + + ++K + + + ++ V L + +++ +R
Sbjct: 240 TLRASDRDLWFLFNP-DPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-GDAR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILIL 355
S++ + + + + A I++ +SI+ L
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353
>gi|301048205|ref|ZP_07195241.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300299963|gb|EFJ56348.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 356
Score = 68.2 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/347 (11%), Positives = 95/347 (27%), Gaps = 18/347 (5%)
Query: 2 PGILWRYFFK---YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
++ Y + + + FL+ ++ + +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFFFARYSAQRYLTE----AANGTLALDVVLDIVFYK 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
V + ++ ++P V + SE+ A G S +L + +I L IF L
Sbjct: 57 VLIALEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTL 116
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ L QQ + D ++ + N + + +
Sbjct: 117 LSMYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALI 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGF 237
+TS + D V L Y D N N+ + ++
Sbjct: 177 YTSTANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ +K + + + L + M L+A S+S
Sbjct: 237 DQSPNVK---------RKAKSVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRV 287
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + ++ + ++ + ++ +G + + +
Sbjct: 288 KPRQGRFSTLLPLTLLF-VAIFYGGDVCRTLVANGAIPLIPGLWLVP 333
>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 441
Score = 67.8 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY K ++ + L + ++ + ++ L A +
Sbjct: 1 MKLIDRYILKAHVGPFFFAFLTIIFVLILQFFASFADRFIGR-GIGFGALVELIALQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P L+ ++ F L TSE+ + RA G+S+++L+ P ++ ++L F N
Sbjct: 60 MVGLAAPMAVLIAVVMAFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSFFVERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L+ +
Sbjct: 120 VVQPLANYQARSLMDDIVKAKPNFGITENAF 150
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ N R +++ + L+ A + + +R I +F +
Sbjct: 334 NRDVNQGMVNRFMAEYHKKYALAFACFFFVLVGAPLGI-LARRGGFGIGAILSLFFFVLY 392
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ ++ + G+L P AA + + ++ + +++
Sbjct: 393 WILMIAGEKMAVRGVLEPWAAIWMADAVMAAIGLTLVI 430
>gi|325295268|ref|YP_004281782.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065716|gb|ADY73723.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 361
Score = 67.8 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/354 (13%), Positives = 113/354 (31%), Gaps = 11/354 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L+ + L + ++ + + I + SI + +P
Sbjct: 4 KIIHRYIFLEILRVFILTLGLFIFVILMDRASSIAETVFG-QGVSILNFLSVLVKGIPAF 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP ++ ++VF L +ELV ++ G+S +L P + + I + +
Sbjct: 63 LGMTIPMAFILSVLIVFIQLGNNNELVALKSCGVSTKELSKPVIFLGVAFSILSFYSLMF 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ I++ + S+ + +K+ PE E+F
Sbjct: 123 LMPKSNVAMKKEIEELVKKKITMSISPKNF---SSNFPGVTFYVEKLYPEKGYLENFMVS 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ K I + D V L + +
Sbjct: 180 LVKKDELITIFAKKGMLRTEKDTVFLDIQDGTGEFINWKKPENFKVLNFKNYTVKLYRFT 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + A+ + + + + L + + ++A S++L RS+
Sbjct: 240 KREKFESIRY----KTLPELISSNRIEAKVELFKRLGLSLAPLIVGILAFSLALIIPRSS 295
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
I+ + + Y + T+ K + + V L+ + L + +
Sbjct: 296 IGIGILLS-LLIIVVYYILYTLTKKIALNTGI--VLLPLLTDLFFFVLGGFLYI 346
>gi|194336947|ref|YP_002018741.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309424|gb|ACF44124.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 441
Score = 67.8 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K ++ + L+ + + ++ + ++ + L +
Sbjct: 1 MKIIDRYILKAHVGSFLFAFVTIIFVLILQFFATFADRFMGK-GIGFTAMVELILLQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ P LV ++ F +L TSE+ + RA GIS+++L+ P ++ +LL +F N
Sbjct: 60 MVGLAAPMAVLVSVVMAFGSLTTTSEMTVFRASGISLYRLMMPVLLAGLLLSLFVERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L+ + +
Sbjct: 120 VVLPEANYYAKSLMVDIARSKPAFGLAENAF 150
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 46/128 (35%), Gaps = 2/128 (1%)
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ + + + + R + ++ +N R ++ + L
Sbjct: 304 MITAKMANKTRAEAAGYVDRQLARLDGELKNIE-ANRNMYNRYMAAYHKKYALSLACFVF 362
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ A + + +R + A +F + + ++ + + GIL P+ + + +
Sbjct: 363 VLVGAPLGV-LARRGGFGVGAAISLFLFVLYWMLMISGEKIAERGILDPMISMWLANAVM 421
Query: 348 ISLSILIL 355
++ I ++
Sbjct: 422 ATVGISLM 429
>gi|320335816|ref|YP_004172527.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319757105|gb|ADV68862.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 371
Score = 67.8 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/334 (13%), Positives = 90/334 (26%), Gaps = 11/334 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L + L ++L DL + + + + +L T+VP ++ Q +
Sbjct: 31 YVLREVLPLYVVGALVFLLLT-TTDLISGVVGILLSYHPTPRQAWLLYVTQVPRLLNQSL 89
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+V F L + SEL + A G+ L P ++ + L+G F +
Sbjct: 90 ILAIPFAVLVGFGRLAKDSELKATAAGGVRPLNLAWPLLLPAALIGAFVFYNGAYLTPQA 149
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ T +
Sbjct: 150 QAQWNTAWFSVYRQAPPPPVTTTYTYAQDGTLFSASRVETPQGATVANLTGVLVQTPTE- 208
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
L + P + + T + D + + A
Sbjct: 209 ---TITASTGSWDARAKTWTLPGGWVVRGDARPAEFH--TPRTFPQRDEIARPTPPPAES 263
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ E+ +++ S + N+ + + A+++ L
Sbjct: 264 TLPELRAELA-SGRLNVQERRTYQFNIARRYADAFTALGFAFAASALGLMV---RNRAWA 319
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
V +F Y + + + SG L P AA
Sbjct: 320 VTNVVFLILGFYIVWSTVPQLAGSGALPPNLAAW 353
>gi|254521723|ref|ZP_05133778.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
gi|219719314|gb|EED37839.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
Length = 360
Score = 67.8 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/362 (10%), Positives = 107/362 (29%), Gaps = 13/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY ++++ L L+ +++ L +I + + +
Sbjct: 1 MLK-LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ +LL P ++ + + +
Sbjct: 59 AYLPLILPLALMLGLLLAIARLYRDSEMAVITAIGVGPKRLLRPLLMLVVPVVLLVGACS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ +I + + + + + N E
Sbjct: 119 LWLGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTELGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-YGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++L + + +D T
Sbjct: 179 QKDDRIEVVSAAGGRMFFEGARQRFLELDDGHQVEGPAAGGLDYRLATFARNDVALPDGA 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ ++ + + Q + + PL+ +A L+ +
Sbjct: 239 QTRTEDDPELMPTLQLIGDGRPQA-------QAQLHRRLAPPLIALAFALLTVPLGRSSP 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + ++ + + + ++ I + +G + + ++LSI +
Sbjct: 292 RQQRYGRMM-LALMAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLALSIWM--YAR 348
Query: 360 DG 361
DG
Sbjct: 349 DG 350
>gi|315617675|gb|EFU98281.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 335
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 SDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HHAVALDPNDTDQMDMRTLWNTDTTRARAELNWRITLIFT 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ ++L+I++
Sbjct: 304 NLIYLALAIVL 314
>gi|261364965|ref|ZP_05977848.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
gi|288566762|gb|EFC88322.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
Length = 371
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/352 (11%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + + K + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTSQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ ++++++L
Sbjct: 297 T-YNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLL 347
>gi|261377636|ref|ZP_05982209.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146390|gb|EEZ72808.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 371
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/352 (11%), Positives = 113/352 (32%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK K + ND + + K + + +
Sbjct: 180 QDKNGKDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTSQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ ++++++L
Sbjct: 297 T-YNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLL 347
>gi|255066291|ref|ZP_05318146.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
gi|255049501|gb|EET44965.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
Length = 371
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + + K + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTSQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ ++++++L
Sbjct: 297 T-YNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLL 347
>gi|241760314|ref|ZP_04758409.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
gi|319637672|ref|ZP_07992438.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
gi|241319192|gb|EER55670.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
gi|317400827|gb|EFV81482.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
Length = 371
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/352 (12%), Positives = 110/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + F
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
N I + ++K L+ Y+Y P + ++ +
Sbjct: 181 DKNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKL 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S I SN H + I + + ++ + L+A +S RS
Sbjct: 241 IDPVSHRRTIPTAQLIGSSNPQHQAE----LMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ +++++L
Sbjct: 297 T-YNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLL 347
>gi|329894348|ref|ZP_08270218.1| putative permease [gamma proteobacterium IMCC3088]
gi|328923144|gb|EGG30467.1| putative permease [gamma proteobacterium IMCC3088]
Length = 372
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 110/361 (30%), Gaps = 15/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L T L ++VF + E + + A + +P +
Sbjct: 2 LIVRYLTRDILVNTSAVSLVVFLVVFSSQFVRRLADVAE-GDLAAGFLASIMFFSIPSYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P V ++ L SE+V+ A GI W LL +V ++ I + + +
Sbjct: 61 ELILPLGFFVGLMLALGRLYTDSEMVVLSASGIGPWHLLRWVLVSGAVVAILSAGLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++L+ + + + + S +
Sbjct: 121 TPWTKTKVLNLVTEASNEKGLAAFVPGRFQRRSGGFDTFYAESVESDQQGLKGLFVAEQG 180
Query: 183 TIDKKNKIIHRKDADL------AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++ A+ ++L YQ ++ T + +
Sbjct: 181 MSSAGEPLVTITYAERGRVVSSQEHGGRYLELLNGRRYQGQPGQLEYRVTEFEVLGERLP 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ Y+ + +N ++ + + LM + +A ++
Sbjct: 241 DADSAGSAFGDDLYDALPTQMLFLDNNSAST----ATLHWRLSLVLMPFNLAFLALGLAR 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +++ + L + ++ + + + + + + ++LL
Sbjct: 297 TDRRRGRYTMLLPAIVLYLVYLVGLASLRGAAAEGASVG---SLWGLHAVIAGIGCVVLL 353
Query: 357 Q 357
Sbjct: 354 W 354
>gi|153951775|ref|YP_001398642.1| hypothetical protein JJD26997_1652 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939221|gb|ABS43962.1| putative membrane protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 352
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/354 (11%), Positives = 102/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSFYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + DF +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDFNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNIALLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y I P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFIFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAFVTFIAFVVILMVWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|121730353|ref|ZP_01682711.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
[Vibrio cholerae V52]
gi|121627894|gb|EAX60475.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
[Vibrio cholerae V52]
Length = 233
Score = 67.8 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 3/233 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ D+ + + + L Y+ +D T + +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGL 233
>gi|261379717|ref|ZP_05984290.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797387|gb|EFC52734.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 371
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/352 (12%), Positives = 110/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + F
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQ 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
N I + ++K L+ Y+Y P + ++ +
Sbjct: 181 DKNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKL 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S I SN H + I + + ++ + L+A +S RS
Sbjct: 241 IDPVSHRRTIPTAQLIGSSNPQHQAE----LMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ +++++L
Sbjct: 297 T-YNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLL 347
>gi|57237364|ref|YP_178377.1| hypothetical protein CJE0358 [Campylobacter jejuni RM1221]
gi|57166168|gb|AAW34947.1| membrane protein, putative [Campylobacter jejuni RM1221]
Length = 352
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 102/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAIVTFMAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|121612521|ref|YP_001000023.1| hypothetical protein CJJ81176_0335 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|87250256|gb|EAQ73214.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
Length = 352
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 102/354 (28%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTS 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + D +
Sbjct: 119 FAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + N + K G D + K + +
Sbjct: 179 FVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASN 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + + Y + P + LI +R
Sbjct: 239 SDYSISDALESF--ELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I+ M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 297 LAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 405
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 1/153 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L RY F L ++ +++ + + +I + + +P
Sbjct: 1 MGRLDRYIFSTAAVAFLGVVVVLAGMIWATQALRQLD-LVTSQGQTIIAFVAITSLTMPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P + LN SE+V+ + G+ W+LL P ++ ++L+ F L+
Sbjct: 60 LVLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCALLAI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
+ + + + + + + + ++
Sbjct: 120 KVVPASLATFREQVTKVRADVVSFVAQPGRFVN 152
>gi|320088911|emb|CBY98669.1| Lipopolysaccharide export system permease protein lptG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 158
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKS 147
+A GE++ + Q G
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGFAAFH 148
>gi|313157781|gb|EFR57192.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
Length = 500
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/249 (11%), Positives = 75/249 (30%), Gaps = 4/249 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ + K YL + M ++ + + +++ S L +
Sbjct: 1 MKTIHKLVLKAYLGPMVLTFFIVMFVLMMNIVWRYIDELVGK-GLSAGIIIELMTYFMAN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P L+ I+ NL EL+ ++ G+S+ ++ P ++ L+ + + + N
Sbjct: 60 MIPLGLPLAMLLAAIMTMGNLGENYELLAMKSAGMSLIRITKPLIILVSLISVGSFFIGN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K ++ + + + + + H + +
Sbjct: 120 NLVPYANKKVFSILYDIRQQKQSLEFQDGLFFNGIDNMSIRVSRQEPETHLLHDVLIYDN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV---KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I + + + K L Y+ R + L I Q
Sbjct: 180 RAANGDMNTIVADSGYIRLSDDKKYLLVTLFNGETYEQTRSSQWFTQSKLRHHIFEKQDQ 239
Query: 239 KFSEQFASR 247
+ +
Sbjct: 240 VIPMEGFAM 248
Score = 42.8 bits (98), Expect = 0.097, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 75/251 (29%), Gaps = 3/251 (1%)
Query: 109 SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+L+ +F +S L + D+ M ++ Q K
Sbjct: 204 YLLVTLFNGETYEQTRSSQWFTQSKLRHHIFEKQDQVIPMEGFAMGRTDANQFSNSQTKN 263
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
I H + + + + ++ V + D +
Sbjct: 264 INELQHDIDSLEKMVNSATTRSYEPLLKEQIFSRDNSVLPQPDSLRIDKSRFRDMAAMDS 323
Query: 229 NIPIKMDGFQKFSEQFASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++M ++ Q + + + + K + YR++ +++ + +P+ ++
Sbjct: 324 IATLQMREKERVWNQARTLAKNSRNMFSFDESAAKEALNQLYRSKVEWHKKMSLPVSIMI 383
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
LI A + R + V I + Y I + K G V + +
Sbjct: 384 FVLIGAPLGA-IIRKGGLGLPVVVSIIFFVIYYIISLSGEKLAKEGSWDAVYGMWLSTFI 442
Query: 347 TISLSILILLQ 357
++I + +
Sbjct: 443 LTPIAIYLTYK 453
>gi|254672902|emb|CBA07219.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 210
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
+A + + ++ NG + W++ N
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGIWLKEKN 154
>gi|152981611|ref|YP_001354150.1| hypothetical protein mma_2460 [Janthinobacterium sp. Marseille]
gi|151281688|gb|ABR90098.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 376
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/356 (9%), Positives = 111/356 (31%), Gaps = 9/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + L T + + L I Q + S L +
Sbjct: 2 IFQRALRRDLLSTAGAVFTTLFTITITVTLIRILGQAAG-GKIASSDVVALLGFSALNYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V ++V + SE+V+ A G+S+ + + P ++ + + T ++ +
Sbjct: 61 PILLNLTGFVAVLLVVTRSYQDSEMVVWFASGLSLAKWIQPVLMFGLPIVTLTAVLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSI 182
+ +++ + D + + + S+ + F G + + +
Sbjct: 121 TPWSNEQSAVYKERYANREDIARVSPGKFQESSSSDRVFFVEGVSGDSTKVKNIFVSSVL 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ ++ + + + + Y D + + Q +
Sbjct: 181 NGKTSVVVAKEGTVEIDQAGDKFLVMHQGRRYDGIPTQSDFELMEFDRYGVLVATQSKAL 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + K++ + + + + + + +PLM + + L+A + R
Sbjct: 241 VGDTSARATSTKELLSNRNN------FNDGEILWRVSLPLMGILLMLLAIPLGFVNPRGG 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + +F +++ ++ + A ++ + + + +
Sbjct: 295 RSA-NLLIALFLFVFYSNMLSFAQATVVQNRSTLMLAWWPVHLVALIVVAVFFTWR 349
>gi|15893268|ref|NP_360982.1| hypothetical protein RC1345 [Rickettsia conorii str. Malish 7]
gi|15620488|gb|AAL03883.1| unknown [Rickettsia conorii str. Malish 7]
Length = 378
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 129/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 24 KYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 81
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P I ++ I ++ NL +L+I +A G++ QL P + ++++ + + + I
Sbjct: 82 LPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSNILPL 141
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 142 SHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 201
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + ++ + + + V + +S + + +
Sbjct: 202 SVVFAGSGTLNIYDNSPIFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQR 258
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ + I + + + I+ PL + +A +V L +
Sbjct: 259 TKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPY 318
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +++ +++ + + ++K
Sbjct: 319 SKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 376
>gi|325132745|gb|EGC55428.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
Length = 396
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 27 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 85
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 86 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 145
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 146 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 204
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 205 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 264
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 265 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 321
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 322 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 372
>gi|152993636|ref|YP_001359357.1| hypothetical protein SUN_2059 [Sulfurovum sp. NBC37-1]
gi|151425497|dbj|BAF73000.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 361
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/349 (14%), Positives = 119/349 (34%), Gaps = 7/349 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+RY K+Y+K L L G ID + ++ NY I + +
Sbjct: 11 FRYLAKHYIKNLLAILFGLSFAFAAIDYFQYTEELQGSWNYKILYIFYMWQ----EALGL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P + I+ + + + A G + +L +P V + L + + +
Sbjct: 67 LYPLAIVFAVIMTKLTFVKQNTMGALHAFGYTKKRLFSPVFVIASLTYAVFIYLHTTEFS 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ L++ +D+ + K + I++
Sbjct: 127 YAKDKANMLLKNQVH--AYNVNDMFFKYNDTFVYIKKLNPIVKKIKGITIFKVAGYQVRY 184
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + + I N VK + R +D+ + + + +
Sbjct: 185 TIKAPVAVFNGEEWIAQNATVKTHIYQNGELVRYSMDQKESIATLHGYKPKIIESLYEGK 244
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + + + + Y +++PL +A+ LI +R
Sbjct: 245 ALNIIDAYNTWKLLEIQ-HLDSDKIRATIYNKVIVPLFALALLLILFFKLPFHARMMNFG 303
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++VA+ + F+++ ++ ++ G +G+L P A++P++L +I +
Sbjct: 304 VVVAFSLGVTFLIWGVLFGLEQIGLNGVLKPEFTAVMPIVLLWLYAIYV 352
>gi|170766592|ref|ZP_02901045.1| putative permease [Escherichia albertii TW07627]
gi|170124030|gb|EDS92961.1| putative permease [Escherichia albertii TW07627]
Length = 335
Score = 67.4 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 101/311 (32%), Gaps = 6/311 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I + ++ + + ++ L + + + ++ + +
Sbjct: 130 IESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLR 189
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + + RA + + I +
Sbjct: 190 DFRITDFQDYQAIIG-----HQAVALDPNDTDQMDMRTLWNTDTTRARAELNWRITLIFN 244
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 245 VFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV 303
Query: 344 VILTISLSILI 354
++ + L+I++
Sbjct: 304 NLIYLVLAIVL 314
>gi|203284704|ref|YP_002222444.1| hypothetical protein BDU_816 [Borrelia duttonii Ly]
gi|203288236|ref|YP_002223251.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
gi|201084147|gb|ACH93738.1| uncharacterized conserved protein [Borrelia duttonii Ly]
gi|201085456|gb|ACH95030.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
Length = 402
Score = 67.4 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 59/352 (16%), Positives = 115/352 (32%), Gaps = 9/352 (2%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+ F L T L+ +IL+ + DL E N SI+ + +P
Sbjct: 51 DKIFVNNILLTFLFMNFLFVILIVLFDLLTNLLNYLE-HNLSINDIIYIYYLYLPKCFSD 109
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ L + NL+ +E++ + GISI ++L ++ S+ + + N +
Sbjct: 110 GVALSFLFAVSNLLGNLSMRNEIIGLFSCGISIARILRSIIMLSVFVSVILFFFDNYLVV 169
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ N +II K+ E HI + I D
Sbjct: 170 DTVAERDAFLKNNIGNQGANDRNIII-----KDFAREIYNIKRFDVETHIITNLMIILKD 224
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + R D A + K L V E+ + + + + + + +
Sbjct: 225 QDDNFKKRYDISKAEWVDSKWMLYGVREFYKVELDVIEKFYEVLDGENIVNLEPGYIKII 284
Query: 246 SRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S + K+ I N + L+ + L++ +VS +
Sbjct: 285 MLSSKTLNFSKLVTWIGDLIKENLNYSDALFDLLNRIFFSFRLILLSFTVSFVSLFLKKN 344
Query: 305 RII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + I + I + G L A+ +P IL I ++ +I
Sbjct: 345 IFIWSLLNSIAFAVVYVISIMVFNFLADLGYLSIFIASSLPTILFIIINFVI 396
>gi|238651117|ref|YP_002916975.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
gi|238625215|gb|ACR47921.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
Length = 369
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/358 (12%), Positives = 130/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 15 KYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 72
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + + I
Sbjct: 73 LPVITVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSNILPL 132
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 133 SHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 192
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + ++ + + + V + +S + + +
Sbjct: 193 SVVFASSGTLNIYDNSPIFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQR 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ + I + + + I+ PL + +A +V L +
Sbjct: 250 TKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPY 309
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +++ +++ + + ++K
Sbjct: 310 SKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 367
>gi|161870424|ref|YP_001599597.1| hypothetical protein NMCC_1472 [Neisseria meningitidis 053442]
gi|161595977|gb|ABX73637.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 432
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 63 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 121
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 122 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 181
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 182 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 240
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 241 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 300
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 301 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 357
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 358 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 408
>gi|213423383|ref|ZP_03356371.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 285
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/269 (13%), Positives = 92/269 (34%), Gaps = 6/269 (2%)
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
SE+ + A G+S L+ +V ++ GI + + K +++ + K N
Sbjct: 2 SEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMA 61
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+ Q +N +FI + + ++ + + ++ L + +
Sbjct: 62 ALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGS 121
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ ++ + ++ + + +
Sbjct: 122 QVVTLNKGTRFEGTALLRDFRITDFQNYQAIIG-----HQAVALDPNDTDQMDMRTLWNT 176
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
N RA + ++ I + + M L+ +S+ R + + + + + + I T +
Sbjct: 177 DNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSI 235
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILI 354
KS G G L PV ++ ++L+I +
Sbjct: 236 KSNGGKGKLDPVIWMWAVNLIYLALAIGL 264
>gi|157804262|ref|YP_001492811.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
gi|157785525|gb|ABV74026.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
Length = 360
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 125/355 (35%), Gaps = 5/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIVVTFSVTSIVWITQVLKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +++I +A G+ QL P + ++++ + + + I
Sbjct: 64 LPVITVIAVIYIYNNLKVERQIIILQASGVHNVQLALPALYVALIVMLLAYYISSTIMPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ K+N + + +++ N + +
Sbjct: 124 SHINLKSRLSFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNL 183
Query: 187 KNKIIHR---KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + I+ L++ + + NS + + + ++
Sbjct: 184 SVVFADSGTLNIYDNSPIFELNKGLRQEHDINGNLTQLTFNSLMIKLQNDNPLIPQRTKH 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ Y I + ++ + + + + + I+ PL + +A +V L + S +
Sbjct: 244 NKEANEYYISELLAPPHDLAVTKKIKLIAEAHQRIIWPLYNFVLPFLALAVFLRYPYSKK 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ +L T I + S L + A +++ +++ + + ++K
Sbjct: 304 TTFMPVLFSALTVLLVTSIHFILQNFASKNLNFIFACYSNLVIALTIGLYLFVRK 358
>gi|157965014|ref|YP_001499838.1| putative permease [Rickettsia massiliae MTU5]
gi|157844790|gb|ABV85291.1| Putative permease [Rickettsia massiliae MTU5]
Length = 370
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/364 (12%), Positives = 131/364 (35%), Gaps = 11/364 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + +YF K L + +V++ + ++ + + L +P
Sbjct: 10 MILLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLP 67
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P IT++ I ++ NL +L+I +A G+ QL P + ++++ + +
Sbjct: 68 TLLFILLPVITVITVIYIYNNLKVERQLIILQASGVDNVQLALPALYVALIVMLLAYYIS 127
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENH 174
+ I + K+N + + + + ++ ++ ++
Sbjct: 128 STILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDN 187
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D S+ + ++ + + + + V + +S + +
Sbjct: 188 RNADNPSVVFAGSGTLNIYDNSPIFELNKGRRQEYDV---NGNLTQLTFDSLMIKLQNDN 244
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ ++ + Y I + ++ + I + + + I+ PL + + +V
Sbjct: 245 PLVSQRTKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVTLAV 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L + S + + +L T I + S L + A +++ +++ + +
Sbjct: 305 FLRYPYSKKTTFMPVLFSALIVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYL 364
Query: 355 LLQK 358
++K
Sbjct: 365 FVRK 368
>gi|67459766|ref|YP_247390.1| permease [Rickettsia felis URRWXCal2]
gi|67005299|gb|AAY62225.1| Predicted permeases [Rickettsia felis URRWXCal2]
Length = 369
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 129/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 15 KYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 72
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + + I
Sbjct: 73 LPVITVIAVIYIYNNLKVERQLIILQASGVNNVQLALPALYAALIVMLLAYYISSTILPL 132
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 133 SHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 192
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + + + + + V + +S + + +
Sbjct: 193 SVVFAGSGTLNIYDNNPIFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQR 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ + I + + + I+ PL + +A +V L +
Sbjct: 250 TKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFLALAVFLRYPY 309
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +I+ +++ + + ++K
Sbjct: 310 SKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYSNLIIALTIGLYLFVRK 367
>gi|118602490|ref|YP_903705.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567429|gb|ABL02234.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 371
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 111/353 (31%), Gaps = 4/353 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + + ++VF L + + I+ L + +
Sbjct: 17 ILARYLMRNVSVLLSVVFIVISLVVFGNQLV-LIIKETSKEGIPIADLLPLVGLNMIRDV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ L+ I+ L + SE ++ ++G+ + I++ IF ++ +
Sbjct: 76 VLILSLSLLLAIILSVSKLYKASEAIVMNSLGLGDKHFMVFIQPLVIVIVIFIFILTTVV 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDFTS 181
++ ++++ ++ + + + N + E+
Sbjct: 136 VPWSKQQRGLIMERSENTPEFSFIKKNEFQEFKNNDIVFYASKVSDADNAKEQNMEEIFI 195
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T+ +I + + ++ N + K+ Q
Sbjct: 196 YTLVNNEPVITLAKQAQKYTNFNTNSVYLRLKNGTRYHGFPSNKNKKILNFKLYDLQIID 255
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + + +F + I PL ++ ++++ + RS
Sbjct: 256 GKMQKSISTVTKVESKSTFELLFSNKLTEIAEFQWRISQPLSILILSVLGVLLGKTSPRS 315
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + V G+ + ++ I KS + G P+ ++ + L +
Sbjct: 316 GKN-LGVLVGVVMFIVYNNVLLIAKSTLERGESSPIVGLWWVHLVMLLLIFIF 367
>gi|315500012|ref|YP_004088815.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
gi|315418024|gb|ADU14664.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
Length = 384
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 108/358 (30%), Gaps = 8/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ Y + L + + + + + E S+S + +P
Sbjct: 1 MRTIEGYISRQMRTPILGAIAALTAIAILSQSLTQFDVIVER-GQSLSTFLKITFLALPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I P V +V ++ E+V A G+S+W++ +P V + + + +L+
Sbjct: 60 LSGLIFPVAIFVGTLVALNRMHNDHEIVAGYANGMSLWRIASPVVRFGVYITLMGLLMTL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + + + K + + + + I+
Sbjct: 120 FIQPAASRAMREELFKIKTDVIAAAVREGDFSTTPSGMTIYVQRIDQSGLLRQIFIRTPG 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGF 237
+ + + + L+ Q + + +I +
Sbjct: 180 PHGLDRTYLAREGRVITPVKGGQVLILRDGSTQQLSPEGVLNHLTFAEYSFDISQYVISE 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA--SVS 295
+ + R +E+ N + + + + I PL + L+A +
Sbjct: 240 DYLHFKDSDRFPHELFFPNRAMEWENG-NWTKLMAEGHARISGPLYNLGFCLLAIVGVLG 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
FSR R I + + I + +L + + ++ + LSI+
Sbjct: 299 GAFSRQGYGRRIATVSFIAAGLRIVGFAIEAGCANTPVLNIMQYVVPVALIWVCLSII 356
>gi|332998925|gb|EGK18516.1| hypothetical protein SFVA6_3890 [Shigella flexneri VA-6]
Length = 356
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPW 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|209548671|ref|YP_002280588.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534427|gb|ACI54362.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 393
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 109/320 (34%), Gaps = 6/320 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 1 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 60 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +I + + + + + I + + D
Sbjct: 120 VVEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADER 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D I+ +S + ++ + +
Sbjct: 180 DPAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPDGNVSVINFDSYSFDLSDMTENRGQA 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + R + ++ ++K + + + ++ V L + +++ +R
Sbjct: 240 TLRASDRDLWFLLNP-DPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-GDAR 297
Query: 301 SNQPRII--VAYGIFSGFML 318
S++ + + + F L
Sbjct: 298 SHREARLHPMVSALAYAFAL 317
>gi|325136763|gb|EGC59363.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
gi|325208502|gb|ADZ03954.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
NZ-05/33]
Length = 396
Score = 67.0 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 27 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 85
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 86 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 145
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 146 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 204
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 205 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 264
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S N + + + + I + + ++ + L+A +S RS
Sbjct: 265 LIDPVSHRRTIPTAQLIGS---SNPQHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 321
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 322 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 372
>gi|325287934|ref|YP_004263724.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
gi|324323388|gb|ADY30853.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
Length = 478
Score = 66.6 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + + + + A + R + + I Y +
Sbjct: 354 YQRYNIHILALHSKYALAFSCIILFFVGAPLGA-IIRKGGMGLPMVIAIILFLAYYFLGV 412
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K G + P AA IP ++ + L + + ++
Sbjct: 413 FVGNSAKVGKIPPALAAWIPTLVMLPLGVFLTIR 446
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 1/139 (0%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ + + + +P +I +++P ++ +I+ F L
Sbjct: 1 MLIFIFQTIWLYIGDLAGK-GLDLEIIGKFIFYFMPSLIDKVLPLTVVLSSILTFGTLAE 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
E +A GIS+ + + ++ + LG+ N +A + +L + +
Sbjct: 60 NYEFAAMKASGISLQRAMRTIIIFVLFLGVVAFFFANNVAPAAAHKIYNLKRNIGNVKPA 119
Query: 145 QKSDIIPWMQISNPQQDIF 163
+ +
Sbjct: 120 AIIAEGIFSDFEGMNIKVD 138
>gi|165933910|ref|YP_001650699.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
gi|165908997|gb|ABY73293.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
Length = 369
Score = 66.6 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 129/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 15 KYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 72
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P I ++ I ++ NL +L+I +A G++ QL P + ++++ + + + I
Sbjct: 73 LPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPL 132
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 133 SHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 192
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + ++ + + + V + +S + + +
Sbjct: 193 SVVFAGSGTLNIYDNSPIFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQR 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ + I + + + I+ PL + +A +V L +
Sbjct: 250 TKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPY 309
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +++ +++ + + ++K
Sbjct: 310 SKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 367
>gi|229587242|ref|YP_002845743.1| Putative permease [Rickettsia africae ESF-5]
gi|228022292|gb|ACP54000.1| Putative permease [Rickettsia africae ESF-5]
Length = 369
Score = 66.6 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 128/358 (35%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 15 KYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 72
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P I ++ I ++ NL +L+I + G++ QL P + ++++ + + + I
Sbjct: 73 LPVIMVITVIYIYNNLKVERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSNILPL 132
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 133 SHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 192
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + ++ + + + V + +S + + +
Sbjct: 193 SVVFAGSGTLNIYDNSPIFELNKGIRQEYDV---NGNLTQLTFDSLIIKLQNDNPLVSQR 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ + I + + + I+ PL + +A +V L +
Sbjct: 250 TKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPY 309
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +++ +++ + + ++K
Sbjct: 310 SKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 367
>gi|309794091|ref|ZP_07688516.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308122498|gb|EFO59760.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 356
Score = 66.6 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 96/344 (27%), Gaps = 12/344 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++ V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLLVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKF 240
+ D V L Y D N N+ + ++ +
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQS 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+K + + + L + M L+A S+S R
Sbjct: 240 PNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ + + Y + ++ +G + + +
Sbjct: 291 QGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 333
>gi|283778149|ref|YP_003368904.1| permease [Pirellula staleyi DSM 6068]
gi|283436602|gb|ADB15044.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
Length = 395
Score = 66.6 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/395 (11%), Positives = 119/395 (30%), Gaps = 46/395 (11%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP I+ R L+ ++ + + ++ + + L L +P
Sbjct: 1 MPVIV-RQVVWDILQWFTIAIVSLTVFMMLVFVGQQAR----LYGLGALAILRLIPYILP 55
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L VV+ ++ +E+V +++GIS ++ P + + LL + V +
Sbjct: 56 NALAFAVPGSILFTVCVVYGRMSSDNEVVAIKSMGISPMVVVWPSLALAFLLSLVAVWLN 115
Query: 121 NPIATSGEKI-------------GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
+ + G L Q +G + + + +
Sbjct: 116 DVAFSWGVTGMRRVVLQSVEEICYGMLRTQRSYSGPTFQIIVKDVEGRKLIRPIMTFSEN 175
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND------------KVKLKKVVEYQ 215
+P + + + + + D I +++ ++KL+ +
Sbjct: 176 NDMPAFTLRATEAELRSNLQRNTLVVVLTDCEIDFSNGARVSSPGIVEREIKLEDATHKR 235
Query: 216 YGRIPI------DKNSTTLNIPIKMDGFQKFSEQFASRSFY---------EIIKKMSFSN 260
G +S I++ ++ + + +
Sbjct: 236 VGGDSPTNLPLRQISSEVELQEIEITKLEQSLAAETGMNLMTGNFFELSPDAWQPKKKKL 295
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++ YR T+ + +A +I +++ S+ + Y
Sbjct: 296 ETARTRLYRLRTEPWRRWSNGFACLAFVMIGTPLAITLRNSDWMSTFGRCFLPILIGYYP 355
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ KSG L P + I I ++ ++
Sbjct: 356 FLAFALEKAKSGDLPPY-SIWIANIACAAVGYWLI 389
>gi|291327104|ref|ZP_06127004.2| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
gi|291311564|gb|EFE52017.1| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
Length = 343
Score = 66.6 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/330 (11%), Positives = 110/330 (33%), Gaps = 7/330 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ F +I N + L VP + Q I+P + ++ + L
Sbjct: 1 MLIFFSQKSIDILG-AAVQGNIPSNLVLPLLGLGVPEMAQLILPLSLFLGLLMTYSKLYT 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + A G+ L+ +V +++ + V I + + ++ K N
Sbjct: 60 ESEITVMHACGLGKSVLVKAALVLAVITAMVAVANITWMLPWSSQYQEQVLADAKANPGL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ + ++IG K +++ +++ ++ + +
Sbjct: 120 AAMVEGQFKTTKDGNYVLYIGDVKGSNFKNVFLAQLRAANEQRPSVVVADSGYMKEDPDG 179
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+ + +Y + ++ + + + S + +
Sbjct: 180 RQVVVLNEGTRYEGTALLRDFRITDFVNYQAIVDHQTAETRSDRVEQ-----KNMLQLWS 234
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ +F++ + I +V M L+ +S R + + + + + + + +
Sbjct: 235 ENTPEVNAEFHWRLTIVFSVVVMALMVVPLSEVNPRQGRV-LSMLPAMLLYLIFFLLQST 293
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILI 354
+++ G L P + + L+I++
Sbjct: 294 LRNSADKGDLDPRYTMWAVNVGYLILAIVL 323
>gi|225075102|ref|ZP_03718301.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
NRL30031/H210]
gi|224953586|gb|EEG34795.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
NRL30031/H210]
Length = 373
Score = 66.6 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 111/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + + + + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGRADYNRVSFQNLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTSQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T +++ + G + L I+ +++++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLL 347
>gi|332284928|ref|YP_004416839.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
gi|330428881|gb|AEC20215.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
Length = 371
Score = 66.3 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 7/322 (2%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ LA + I+ + + R SE+V+ A G+S+
Sbjct: 39 AANGTIGANVVFGLATFSSITALPVILSVSLFIAVLTTVTRNFRESEMVVWFASGLSLKD 98
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
+ P + ++ + I ++ + + + Q+++ D K +++
Sbjct: 99 WIRPVLRCAVPVAIIIAVLTLVASPWAYRQISEYRQRFEQRSDLSKVTAGQFIE--TEDG 156
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD---ADLAIIYNDKVKLKKVVEYQYG 217
A++ + + + + + + + + L Y
Sbjct: 157 ARVFFAEEPNEPGEEMGNVIARVVTPEWLSVVTAESARIQTEENGDRFLVLTDGHRYDLK 216
Query: 218 RIPIDKNSTTLNIP-IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
D + +++ S A R E K + K N RA +Q +
Sbjct: 217 PDMPDFRLMEFDSYGFRLESNASESSAEAVRRMAESQIKARPTLKLFTDDNDRALSQIMW 276
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ +PL + + L+A + R + + G+ G + +I + + + SG L
Sbjct: 277 RVALPLAALNLALLAIPLGAVNPRLGRSGDFLIAGL-VGLLYMNLINLSRGWIGSGQLNF 335
Query: 337 VAAALIPVILTISLSILILLQK 358
+ + L ++ +K
Sbjct: 336 GIGLWLVHAIFTGLMFYMMWRK 357
>gi|240113703|ref|ZP_04728193.1| hypothetical protein NgonM_09082 [Neisseria gonorrhoeae MS11]
gi|268599771|ref|ZP_06133938.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268583902|gb|EEZ48578.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
Length = 396
Score = 66.3 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 112/354 (31%), Gaps = 6/354 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 25 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 83
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 84 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 143
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 144 WVIPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + ND + ++ + K++ +
Sbjct: 203 REQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTT 262
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 263 PKLIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRS 319
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 320 GHT-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 372
>gi|320101899|ref|YP_004177490.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
gi|319749181|gb|ADV60941.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
Length = 507
Score = 66.3 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 4/160 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL RY + L + LL ++ + + + + +A +P
Sbjct: 5 GILQRYVIRQLLGSFALALLAISSIIVLFLVMAE----AAKAGLGLDQIVQIAPYLIPGT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L VV+ L +E+ +A G+S+W +L P ++ SI+L L +
Sbjct: 61 LPYTVPVALLFSVTVVYGRLAGDNEITAVKAAGLSVWTVLWPCILLSIVLSGALYLAASH 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
+ +I + + N I
Sbjct: 121 VIPEANHAVKRVIFSNYEQTFTTFLRRDRILNNPNWPFVI 160
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 43/106 (40%)
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + + +++ + ET+ I + L+ A V + F++ + +
Sbjct: 396 WPEVNRAFREYDDWDYYDRKLETEKQMRIALSCGPFFFALLGAPVGILFAKRDYLSAFIT 455
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + Y + + + GK G+L P+ A + + L+ L+L
Sbjct: 456 CFLPIILIYYPLTLLGINLGKEGVLDPMIALWMGNLTLSVLAGLVL 501
>gi|257487384|ref|ZP_05641425.1| hypothetical protein PsyrptA_29193 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 148
Score = 66.3 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 1/131 (0%)
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ + S S + + N R F+ ++ P + VA
Sbjct: 17 RWDVALSPQLLSTVIMPPESLSISGLWNYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVA 75
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ L+A S RS V G+ GF I ++ P+ A L+P
Sbjct: 76 LVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAA 135
Query: 347 TISLSILILLQ 357
+ +L +
Sbjct: 136 CALAGVYLLRR 146
>gi|197105522|ref|YP_002130899.1| hypothetical protein PHZ_c2059 [Phenylobacterium zucineum HLK1]
gi|196478942|gb|ACG78470.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 386
Score = 65.9 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 47/317 (14%), Positives = 107/317 (33%), Gaps = 11/317 (3%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+ A LA VP + +P + I+V +N+ SE+ A G+S+ +L P++V
Sbjct: 36 FTFVAQLAVNLVPHYVGLTLPAAFFIALIIVVNRMNQASEIDALLAAGVSLTRLAAPYLV 95
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
+ +L T++V + ++ ++ G + + ++ A
Sbjct: 96 LAGVLSFLTLIVFGALQPYSRYAYRAVLHAAQNAGWSGQVPEGTIIAPNDDLIMTTDQAD 155
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRI------ 219
++ V LK + ++ R
Sbjct: 156 AAGQRLTRVFIRRLTPEGREEVTTAGVAELRRTADGKNVTLMLKDGQQLRFNRRGEPELL 215
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + L + + + +E+ K ++ ++ + Y +
Sbjct: 216 SFEDFTMQLPLSGPARLLRARGGDERELNLFELAK--KANDPQSVIPRETLLAELYGRLA 273
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
L L + L+A + L RS + ++ GI + +I + +SF ++G A
Sbjct: 274 RALALPLLPLLAVPLGLSAKRSGRAPGVIVGGILL-LAFHHLIQLGQSFAETGRAPAEAG 332
Query: 340 ALIPVILTISLSILILL 356
IP + ++ + L
Sbjct: 333 VGIPFVAFAAICFTVFL 349
>gi|297517382|ref|ZP_06935768.1| hypothetical protein EcolOP_07050 [Escherichia coli OP50]
Length = 340
Score = 65.9 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/327 (13%), Positives = 97/327 (29%), Gaps = 13/327 (3%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
++ L+F+ Q + E N ++ + +V + ++ ++P V V
Sbjct: 1 MIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVGVT 60
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
+ SE+ A G S +L + +I L IF L+ L QQ
Sbjct: 61 LGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQS 120
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ D ++ + N + + + +TS + D
Sbjct: 121 QSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFRARSVDVVD 180
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
V L Y D N N+ + ++ + +K
Sbjct: 181 PSPEKPTVMLHNGTAYLIDHQGRDDNEQIYRNLQLHLNPLDQSPNVK---------RKAK 231
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + + L + M L+A S+S R + ++ + +
Sbjct: 232 SVTELARSVFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQGRFSTLLPLTLLFIAI 291
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPV 344
Y + ++ +G + + +
Sbjct: 292 FYG-GDVCRTLVANGAIPLIPGLWLVP 317
>gi|42526553|ref|NP_971651.1| hypothetical protein TDE1043 [Treponema denticola ATCC 35405]
gi|41816746|gb|AAS11532.1| membrane protein, putative [Treponema denticola ATCC 35405]
gi|325473491|gb|EGC76686.1| membrane protein [Treponema denticola F0402]
Length = 377
Score = 65.9 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/368 (10%), Positives = 106/368 (28%), Gaps = 14/368 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ Y FK L + L + FV + + ++ +L +P I
Sbjct: 9 KTIFVYVFKELLLYFIVSFLFFFFIFFVNQILLMAEEILSKK-APTKDVLLLLFYSLPFI 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P+ L+ ++ + E + A+GIS +L P + + + + + +
Sbjct: 68 IATTAPYAALIGTLMCLGRFSADHEFISMNALGISTSFILIPVFALGVFVSVGSFITNDI 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +++ + + + + N + + + I +
Sbjct: 128 LIPRGTIKFNEVLYNIASSTPALELESYSVKRNENSIVVSGLIKDNSIHDLLIIDSSQRG 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK--- 239
+ ++++ K I + K
Sbjct: 188 AKRFLSSSQTDVKKSNDRSIIMQLEMLNPRLLNLDLNNRSKFDVVYGESITYNVLAKDVA 247
Query: 240 ----FSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAA 292
S + Y++IK + ++ + + +P L+A
Sbjct: 248 PKFISSSGPDKMTSYDLIKDIKQKKEAGDTSPRLLNIYIMELHRKFSVPFGAFFFVLLAF 307
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP--VAAALIPVILTISL 350
++S ++ G+ + + + L P +L +
Sbjct: 308 AIS-RAGKTYDQSTGFIVGLLISVAYWAFLIGGQMLCLESGLNINGALVMWFPNVLLVIC 366
Query: 351 SILILLQK 358
+ +I +++
Sbjct: 367 TAVIAIKR 374
>gi|268594204|ref|ZP_06128371.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268595873|ref|ZP_06130040.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|293399673|ref|ZP_06643825.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
gi|268547593|gb|EEZ43011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268549661|gb|EEZ44680.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|291609924|gb|EFF39047.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
Length = 384
Score = 65.9 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 112/354 (31%), Gaps = 6/354 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + ND + ++ + K++ +
Sbjct: 191 REQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTT 250
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 251 PKLIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRS 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 308 GHT-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 360
>gi|319956049|ref|YP_004167312.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
16511]
gi|319418453|gb|ADV45563.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
16511]
Length = 372
Score = 65.9 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/353 (13%), Positives = 112/353 (31%), Gaps = 6/353 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P + Y ++YLK L L+G + V ID + ++ N I + A
Sbjct: 4 PKRTFLYIARHYLKNFLILLIGLSLAVVFIDFLQQAQRLHGGANRKI----LYAFYTWEY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I P + L+ + + V + G Q+L PF+ +L+ + +
Sbjct: 60 MVALIYPLVILMAMAWTQISFIYRNVFVSLFSFGFGRRQILIPFLASGVLIYLVFTGLQM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
G+ ++ + + + + +
Sbjct: 120 TSFAYGQDRARMILHADRYKDALNNLFFKYNDSFVYASRLDPLHKALLRGMIFEVKKNQV 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ +A + K G + + L + F+K
Sbjct: 180 VRTLRFDEARFHDGEWIAPRALVRSKRFDTEGELTGFEDKELKNMILLKGYRPKVFRKIY 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + K + + Y ++ PL +AM +I + + R
Sbjct: 240 EGGTFSLVDSLAAL--HLLKKQGLSADKVKAILYNKVLTPLFALAMMVIFFYRTPLYHRF 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + S + + ++ + G +G++ P +P+++ I + +
Sbjct: 298 VRKEQLWTALLGSALLTWALLFALFRLGMNGVIDPDLGQTLPILILILYAWRL 350
>gi|157826358|ref|YP_001494078.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
gi|157800316|gb|ABV75570.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
Length = 360
Score = 65.9 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/358 (12%), Positives = 130/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIVVTFSLTSIVWITQILKLLYLFDK--GIKVMDFFNLIVLVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + + I
Sbjct: 64 LPVITVIAIIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSTIMPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ ++ ++ D
Sbjct: 124 SHINLKSHLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNP 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + + + + + V + +S + + +
Sbjct: 184 SVVFAGSGTLNIYDNNPIFELNKGLRQEYDV---NGNLTQLTFDSLMIKLQNDNHLASQR 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ ++ I + + + I+ PL + +A +V L +
Sbjct: 241 TQHNKEANEYYISELLAPTHDLVITKKIKLIAEAHQRIIWPLYNFVLPFLALAVFLRYPY 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + +L T I + S L + A +++ +++ + + ++K
Sbjct: 301 SKKTTFMPVLFSTLTVLLVTSIHFILQNFASKNLDFIFACYSNLVIALTIGLYLFVRK 358
>gi|254672901|emb|CBA07216.1| predicted permease [Neisseria meningitidis alpha275]
Length = 124
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S E+ + ++N + ++ +V P M L+A + +
Sbjct: 1 MDVLLVKPDQMSVGELTTYIRHL-QNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTP 59
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ +R + + GI G + + + + P A +P I L++ ++
Sbjct: 60 QTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLIR 119
Query: 357 QKE 359
++E
Sbjct: 120 KQE 122
>gi|254282226|ref|ZP_04957194.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
gi|219678429|gb|EED34778.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
Length = 389
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/355 (11%), Positives = 113/355 (31%), Gaps = 20/355 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y L L + ++VF + + + + ++P + I
Sbjct: 32 KYLTGDILAHALAVSVVLFLVVFSGRFIRYLAEAA-VGAITSDILLPVMLFKLPSFFELI 90
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + ++ L SELV+ +A G+ +L ++ ++ + + +A
Sbjct: 91 LPLGLFIGILLSLGRLYADSELVVLKACGVGPGKLATYLLLPALAFSLVVGFLSLYLAPE 150
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
G ++ + Q+ + + + + H
Sbjct: 151 GSARAQAMLDNPRSAEGLQQLSEGRFKKQRSGNFVSYAETISDDGVMHNIFVVEKSEAGT 210
Query: 187 KNKIIHRKD----ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ D ++L+ Y+ D T ++ ++
Sbjct: 211 ARTRVTYADAGEVVVDPENGRRYLELRDGARYEGVPGQADYTVTKFKRYGEL-IPEREGG 269
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ I ++ S+ S A+ Y+ +P+++ ++LIA +S +R
Sbjct: 270 IRDNLKTDAISTRLLLSDFS-----PSAQAALYWRFSLPVLVPVISLIALPLSRTDARRG 324
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI---PVILTISLSILI 354
+ +A + + +T ++ +SG + ++ L++++
Sbjct: 325 RYAK-LAPALLVFLAYFIGLTQARTAVESGD-----SGWWFVGVHLIFTLLAVVL 373
>gi|307566095|ref|ZP_07628553.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
gi|307345283|gb|EFN90662.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
Length = 633
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 1/223 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K + + ++ ++ + L + + +I A +
Sbjct: 4 FKKLDIFIAKQFGLLFVGTFFISLFVLMMQFLWRFVDDLIGK-GLTIDVLAQFFGYMALM 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q +P L+ +++ + NL +SEL +A GIS++Q + +IL+ + + N
Sbjct: 63 MVPQALPLAVLLSSLMTYGNLGESSELTAIKAAGISLFQSFRGLIGITILITLLSFYFQN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA +K LI K + + + + +
Sbjct: 123 NIAPVAQKHLYQLIISMKQKSPELEIPEGVFYSGIPQTNLYVEKKNLKTGHLYNIMVYRM 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ II L K + + ++ D+
Sbjct: 183 TDSYEDQAIILADSGMLQSTAEKKHLVLNLWNGEWFENMRDQE 225
>gi|296315184|ref|ZP_06865125.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837908|gb|EFH21846.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 371
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 109/352 (30%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFNTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + + + K + + +
Sbjct: 180 QDKNGNDNIIFAKEGNFSLNDNKRTLDLHDGYRYSGTPGKADYNRVSFQHLSLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHRAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|153820469|ref|ZP_01973136.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
gi|126508986|gb|EAZ71580.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
Length = 225
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/223 (10%), Positives = 70/223 (31%), Gaps = 1/223 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI + +++ +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
++ D+ + + + + +Y +P +
Sbjct: 181 DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYM 223
>gi|320537762|ref|ZP_08037685.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
gi|320145385|gb|EFW37078.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
Length = 377
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/352 (12%), Positives = 111/352 (31%), Gaps = 11/352 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL+ Y K L L + FV ++ + + + +L +P+
Sbjct: 11 KKILFLYLSKELLLYFFVCFLFFFFIFFVNNILLMAEDILSK-HAPFKDVMLLMFYSLPM 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II PF LV ++ E + A+G+S+ LL P + + + I + +
Sbjct: 70 IIANSAPFAALVGTLMCIGRFFSDLEFLAMNALGVSMKFLLVPVLAVGLFISIVSFFTND 129
Query: 122 PIATSGE----KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + K+ D+ + S + ++L +
Sbjct: 130 VLLPASFIQLRKVYWDISTSTPALELESYSIKKNQNAVVISGLIKDGIIDELLIIDKGEN 189
Query: 178 DFTSITIDKKNKIIHRKDA---DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ I KK+++ D + ++ + + + + K + +
Sbjct: 190 KESRILGGKKSELKKSTDPAVIMTLDMNEPQMLIIDGKDEKKYDSIVGKKIAYNVLAKNI 249
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + Y++ K + K+N +F+ IP + +A
Sbjct: 250 NPVYFNALGPSDMTSYDLYKDIQTRKKNNEDKRLLNIYNMEFHKKFSIPFGALFFVFLAF 309
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+S + + + G+ + ++ + + + +P
Sbjct: 310 GIS-SVGKVHNQSVGFILGLLIAVAYWAVLMGGQEISLTFDVSGAFMMWLPN 360
>gi|268683689|ref|ZP_06150551.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268623973|gb|EEZ56373.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
Length = 384
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 112/354 (31%), Gaps = 6/354 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + ND + ++ + K++ +
Sbjct: 191 REQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTT 250
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 251 PKLIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRS 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 308 GHT-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 360
>gi|15677420|ref|NP_274576.1| hypothetical protein NMB1570 [Neisseria meningitidis MC58]
gi|304387021|ref|ZP_07369276.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|7226817|gb|AAF41923.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|304338893|gb|EFM04992.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|316983818|gb|EFV62798.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325140780|gb|EGC63294.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
gi|325199831|gb|ADY95286.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
Length = 371
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/352 (10%), Positives = 113/352 (32%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++++++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILL 347
>gi|332708722|ref|ZP_08428694.1| putative permease [Lyngbya majuscula 3L]
gi|332352576|gb|EGJ32144.1| putative permease [Lyngbya majuscula 3L]
Length = 230
Score = 65.9 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 70/228 (30%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L+ + G + + S + A + + P +
Sbjct: 2 DRYIAAELIPPFLFGVGGFSSIGVAVGSLFDMVVKITELGLSWTIAAQVVLLKFPEFMSY 61
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L+ ++ + L+ SEL+ R+ G+S+++L+ P +V S+++ T L I
Sbjct: 62 ALPISVLLATLIAYSRLSNDSELIALRSCGVSLYRLVAPALVLSLVVTGITFLFNELIVP 121
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ +++ + + + + F T+
Sbjct: 122 AANYQATITLEKALNQEKPAFDENGILYPEYQTFPQPNGTTTQTIKRLFYANGFDGQTMK 181
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ L I + L + + + N +
Sbjct: 182 DLTVLEWSNLGKLNKIILSESALWNSKQNTWDFFHGSIYFISPNTSFQ 229
>gi|325108543|ref|YP_004269611.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
gi|324968811|gb|ADY59589.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
Length = 374
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/370 (13%), Positives = 107/370 (28%), Gaps = 18/370 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN-----YSISRGAVLA 55
M I R F+ +L FL M L +IDL + + +
Sbjct: 1 MLTIFERSVFRQFLFVNAVFLCVIMGLFTIIDLFDNVDDFVNHSGEGGFPVIAMKIVGYY 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
I + + + L R ++ + GI +++L P ++ + +
Sbjct: 61 GKMGLFIFDAAAVPMIAISLLTTMLMLKRKGQIKPFLSAGIPAYRVLTPALLCGVCVMTG 120
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ I + + + + I ++ A +I +
Sbjct: 121 LKMANREILLGNAVHHLHATRGKSQSQHRVAPRYDHASHILIDGWAVYPEASRIEQAAFV 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE-----------YQYGRIPIDKN 224
+ K K L++ QY
Sbjct: 181 LPPEIAGNDMICLKAAEAKFYPKQGKRPSGWLLRQSEPKIDSIPLTEAGRQYVIRSRQPE 240
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ + + D K E A S +++ ++ + E + IV P++
Sbjct: 241 NVFVVSDVSPDLIYKAKESSAFLSTRQLLLRIRSPAIDSN-TARDLEFNLHARIVEPVLT 299
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M IA + L G++ F++ ++ ++ PV AA +P+
Sbjct: 300 GLMVWIAIPLILRKESRGMIIAAGNCGLWL-FIVIASTYAVRFMASGSLVTPVQAAWLPL 358
Query: 345 ILTISLSILI 354
L +++ +
Sbjct: 359 YLATPMAVWL 368
>gi|261392198|emb|CAX49712.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 8013]
Length = 371
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|85706342|ref|ZP_01037436.1| Predicted permease [Roseovarius sp. 217]
gi|85669115|gb|EAQ23982.1| Predicted permease [Roseovarius sp. 217]
Length = 374
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/324 (9%), Positives = 97/324 (29%), Gaps = 6/324 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + +V++ + +++ A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIVWINKAVRMFDRLIG-DGQPAWVFVEFTALTLPGVIGVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S +L P +V +++ + L+ + +
Sbjct: 60 IAAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVLVFGVIVAVMMSLLAHYLIPGSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW----EDFTSITI 184
+ N + ++ + + ++ D +
Sbjct: 120 SQLRLRQDEVSRNISAKLLSDGEFLHPAPGITFYIREITQTGELRDVFLSDRRDPEAPVT 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ ++ + + + Q + + +I + ++
Sbjct: 180 YTSSRAYLVQEGGGTRLVMVSGLAQNIRADQNRLFTTYFDDFSYDISSLVSRDVVNLDEV 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFSRSNQ 303
A + E+++ +Q + I L+ V L+ + +
Sbjct: 240 AFANTLEMLRDPEAVAARTGTSYGTVMSQTHGRITAALLCVIAALVGFCTLLVGAHSRFG 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKS 327
V + + +I+ +
Sbjct: 300 VWRQVLLAFGLLVGIKIVESIVVA 323
>gi|121635227|ref|YP_975472.1| hypothetical protein NMC1490 [Neisseria meningitidis FAM18]
gi|254805325|ref|YP_003083546.1| putative permease [Neisseria meningitidis alpha14]
gi|120866933|emb|CAM10693.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis FAM18]
gi|254668867|emb|CBA06967.1| putative permease [Neisseria meningitidis alpha14]
gi|254669825|emb|CBA04193.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|254672903|emb|CBA07222.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325138630|gb|EGC61189.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
ES14902]
gi|325142745|gb|EGC65120.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
961-5945]
gi|325198680|gb|ADY94136.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
Length = 371
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|332969352|gb|EGK08377.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
Length = 370
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/358 (11%), Positives = 115/358 (32%), Gaps = 12/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I + F K + + ++ + + + +I L V +
Sbjct: 2 IYKKQFIKETTLVAIGIFSVVLAILLFTQGVNMLGRAAS-GSVAIDAVGALIGFWVLGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ I + G+ + Q + P + ++ L + + +
Sbjct: 61 PLLLVLTAYISILTVLTRYWRDSEMAIWLSSGLGLKQWIKPVLTFALPLAMLVAAMQLFV 120
Query: 124 ATS---GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +L++Q ++ ++ + +N + ++ + ++
Sbjct: 121 LPNAELRSREYGELLKQKQNLSLIEQGTFAELGKQNNRVYFVEQFDAEVGEMSRLFIREV 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
L + L+ Y D + Q
Sbjct: 181 DEKGRDSVVFAQSGHMKLEADNRRVLVLQNGYRYTGNAGQGDFEQVSF------QELQLV 234
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ S N + + + + I +P+ ++ ++L+A +S R
Sbjct: 235 INTAPKLIEPINHRRTIPSQNLIGSDNPQYQAELMWRISLPITVILLSLLAIPISYFNPR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V + +T+++ + G + P A L+P+ + ++ I +L++
Sbjct: 295 TGN-SYHVVVAVGFFLFYQNGLTLLRDAVEDGKI-PFWAGLLPMHIIMAACIFVLMKM 350
>gi|110638188|ref|YP_678397.1| permease [Cytophaga hutchinsonii ATCC 33406]
gi|110280869|gb|ABG59055.1| conserved hypothetical protein; possible permease [Cytophaga
hutchinsonii ATCC 33406]
Length = 483
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/285 (10%), Positives = 83/285 (29%), Gaps = 2/285 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L K + + + + + + + +++ S A L I
Sbjct: 5 KRLDLLVLKAFFGPFILTVFVVTFIFLMQTILKYIDELVGK-GLSYLDYAELMMYFSMNI 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL + +EL ++ GIS+ +++ P + + + N
Sbjct: 64 LPVALPLAILLSSLMTFGNLGQFNELTAIKSSGISLIRVMVPIAIWVLGCTVGLYFFNNY 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L+ + + I I + +
Sbjct: 124 VVPKANLKAFSLLYDLRQKKPSLDLKPGVFYNGIPGYSIKIVQKFDNDSSIKGVIIYDHT 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + II + + + L+ Y + + +N + +
Sbjct: 184 QSRGNTDVIIADSGSMYLFNQSQYLALELFRGNSYNEFKGEGGMSYINPEEFVRNSFDKT 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ + S +++ K + E + + + +
Sbjct: 244 KIVFNLSSFDLKKTKEELFMGSRQMKGVDELDHHIDSIQRMFVSV 288
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+RS ++ ++ I + E Y + + LI A + +
Sbjct: 343 NQARSIKSYLQGNVERDERFIKEIHEFEVTKYQKFTQAVACFVLFLIGAPLGAIIKK-GG 401
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I V I Y + + K G+ A + + + +
Sbjct: 402 LGIPVLICIIFFIFYYVFSITGEKWTKEGVYPADFAMWFGNGILFCVGLFFM 453
>gi|119356768|ref|YP_911412.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
gi|119354117|gb|ABL64988.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
Length = 442
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K ++ ++ + + ++ + ++ L +
Sbjct: 1 MKIIDRYLLKSHIGPFIFAFITILFVLILQFFAVFSERLLGK-GIGWMTLLELVVVQSAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L+ ++ F + SE+ I RA GIS+++L+ P ++ + LL + N
Sbjct: 60 MVSFTIPMAVLIAVVMAFGAMTNASEITIFRASGISLYRLMAPVLLAATLLSLVAERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ L+ + +
Sbjct: 120 VVLPEANYKAKSLMADIVKSKPVFGLTENAF 150
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+S+ + +++ + + L+ A + + +R I + + +
Sbjct: 336 MESDTGMYNKYMAEYHKKYALAFACIVFALVGAPLGV-LARRGGFGIGAGLSLVFFVLYW 394
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + + G+L P + + I + + +L +
Sbjct: 395 ILMISGEKLAERGLLDPGLSMWLGNITIGFIGLFLLYRL 433
>gi|325134627|gb|EGC57267.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
Length = 371
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/352 (10%), Positives = 113/352 (32%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++++++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILL 347
>gi|322506460|gb|ADX01914.1| permease [Acinetobacter baumannii 1656-2]
gi|323516339|gb|ADX90720.1| permease [Acinetobacter baumannii TCDC-AB0715]
Length = 350
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/340 (11%), Positives = 113/340 (33%), Gaps = 6/340 (1%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
+ +++ L + + S + R+P + I+P + ++V
Sbjct: 1 MVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLV 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
F L E+ + G+S QL + +++ + +++ + G + L
Sbjct: 60 FGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQ 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
++ ++ I+ + K + +I K+A
Sbjct: 120 AVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATR 179
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+ ND + +V+ + I + T + + ++ +S
Sbjct: 180 VEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLENDKDVKFESGDVEALST 237
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
S + ++ ++ + + P ++ +++ ++S R + ++ IF L
Sbjct: 238 SKLFSKANDPVVRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIP-SIFIFASL 296
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ +K+ G L A +L +++ + +K
Sbjct: 297 IVLMIAIKTRISKGELDIW--AYPVALLVYAIAAALFSRK 334
>gi|291045045|ref|ZP_06570753.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011048|gb|EFE03045.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 384
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 113/354 (31%), Gaps = 6/354 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q ++P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + ND + ++ + K++ +
Sbjct: 191 REQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTT 250
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 251 PKLIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRS 307
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 308 GHT-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 360
>gi|251771423|gb|EES52002.1| permease YjgP/YjgQ family protein [Leptospirillum
ferrodiazotrophum]
Length = 377
Score = 65.5 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/323 (14%), Positives = 94/323 (29%), Gaps = 4/323 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY F L LL +IL+ + + S+ L + P
Sbjct: 1 MKIIHRYLFLELLTPFFLSLLVLVILLLTQQAL-LIMNLLVNKGLSVETVFRLLSMIFPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IIP L + F L E++ +A GIS+ +LL P + + + +
Sbjct: 60 FLSMIIPVSVLTASTATFHRLASDGEIIAFKASGISLSRLLLPLFLFAAIGFGTNFYLSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ DL+ + + + + ++
Sbjct: 120 KAMETQGLSLQDLLVRVFQKKLSLAIKPQSFNNFMGRFIIYVEKMPTLSHIDGVFIYQKE 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I + L + ++LK + + + +
Sbjct: 180 KKTGPRTVIFAQSGEILNERHPPGLRLK-LSHGTFFQEGSAQQYIRFGSYDLTITGHHTD 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ +S EI +++ S S +RA Y P + + RS
Sbjct: 239 DSIRVKSIDEIRAEIARS-PSPDPSLFRALEDRYKNYTYPFSCFFFAFLGIPYGIYTMRS 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITI 324
+ V + + Y + TI
Sbjct: 298 GRLAGFVFATVTV-ILFYMMNTI 319
>gi|240127075|ref|ZP_04739736.1| hypothetical protein NgonS_00198 [Neisseria gonorrhoeae SK-93-1035]
gi|268685430|ref|ZP_06152292.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268625714|gb|EEZ58114.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 371
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 113/352 (32%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + ++ + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLDRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTCYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|119953585|ref|YP_945795.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
gi|119862356|gb|AAX18124.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
Length = 355
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/351 (14%), Positives = 109/351 (31%), Gaps = 7/351 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+ F T L+ +IL+ +IDL + N SIS + +P
Sbjct: 4 DKLFVNNISLTFLFMNFLFVILIVLIDLFTNLFNYLD-HNLSISDIVYIYYLYLPKCFSD 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ L + NL+ +E++ + GISI ++L ++ S+ + + N +
Sbjct: 63 GLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVMLFFFDNYLVI 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ N +II + N +
Sbjct: 123 DTIAKRDAFLKNSVGNQGANDRNIIIRDFAREIYNIKHYDIENDTIANLMIILKDQNDNF 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
KK I + + + V+ +E + I ++ + +
Sbjct: 183 KKRYDISKAEWIDSRWRLYGVREFSKIERDVIEKFHEVLDGRGIINLEPEYIKIVMLSSK 242
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +F ++I + + L+ + L++ +VS +
Sbjct: 243 TLNFSKLISWIKALR----REKLDYSEALFDLLSRIFFSFRLILLSFTVSFVSLALKKNI 298
Query: 306 II--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + I + I + G L A+ +P IL I ++ +I
Sbjct: 299 FIWSLLNSIAFAVVYVMSIMVFSFLADLGYLPIAVASSLPTILFIVINFII 349
>gi|315453577|ref|YP_004073847.1| putative integral membrane protein [Helicobacter felis ATCC 49179]
gi|315132629|emb|CBY83257.1| putative integral membrane protein,Permease YjgP/YjgQ [Helicobacter
felis ATCC 49179]
Length = 355
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/348 (11%), Positives = 104/348 (29%), Gaps = 5/348 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
LW + YYLK L+ + ID + ++ + N + +
Sbjct: 3 LWFFVGSYYLKYCFVILMALELFFIGIDSLQYADKFPDAANL----LLLFFVYDGLYALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + R+++ AIG SI Q+LNP + ++ I V +
Sbjct: 59 YTLPISLLLGLVLFYITFIRSNQYSALLAIGYSIRQILNPMLTINLFFIIIFVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + +I + + + + + + ++ +
Sbjct: 119 VYMQDKAMAIIYKDNAGNVSENLLVKYNNDYVYFGKINPLLQNAQNIKIFTLKNDELSAV 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + + G + + +
Sbjct: 179 AQADHAAFKDKYWTLHQATIATLPTPLGLGDQGLLVENAPLLKTLKGFHPKVLDTIYQNK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + + + Y I+ P + ++ A + +R
Sbjct: 239 PAVSITDAFRSLHVLY-RQHGDTKKIRGFLYVAILTPFFVPLTAILIARYTPNLARYENL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ I +L+ + + F +G+ P +IP + +++
Sbjct: 298 ALLSLKFIILALILWGLFFALGKFSIAGLFYPEFGIVIPFAILCGITL 345
>gi|183221200|ref|YP_001839196.1| putative permease [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911291|ref|YP_001962846.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775967|gb|ABZ94268.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779622|gb|ABZ97920.1| Putative permease; putative membrane protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 530
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/290 (12%), Positives = 73/290 (25%), Gaps = 4/290 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL Y K L L L ++ + + ++ R
Sbjct: 37 PSILRIYILKEILSPFLVALSFFTMIYMAVAIQKMIGLFVGK-GVDFFRLLDYMGYVFGN 95
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L+ I+ L+ SE+ RA G+S + + F+V L+ + +
Sbjct: 96 TLPMTIPMACLMSGIMAAGRLSGDSEITAMRASGVSFPYIYSNFLVFGFLMTLIVGYLNF 155
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL---PENHIWED 178
+ + D + G E +
Sbjct: 156 YLGPENTRKMKDFDNWIATYNPLLAIQPGQFSGDKTQDFFSEKGRTMYSGGVDEEGNLSN 215
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + K+ +V+ + G + KN+
Sbjct: 216 VQIREWAISAAGTDFIMVNNLAVPMGGSKMLQVINAKEGLLVEKKNAAGEYEKSVRLKKG 275
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
E + I M+ N ++T + L +
Sbjct: 276 YVIEWDPETNAIGITNFMNGEMDYNTPAKKESKTLSINVKPDTFSLPMLI 325
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 1/111 (0%)
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + ++S + + + PL ++ + L RS + +
Sbjct: 385 FALFTQLSELLNESKKTLTGFNVEIHKRFATPLSCQIFFFLSFPLGLVVKRSGK-GMSFT 443
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + YT + I+ +LSI I++ + D
Sbjct: 444 LAVVFLLIYYTFFIFGSGISYKENVPDWVGPWSANIVIATLSIYIMISRTD 494
>gi|254418640|ref|ZP_05032364.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
gi|196184817|gb|EDX79793.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
Length = 397
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/360 (8%), Positives = 109/360 (30%), Gaps = 11/360 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ + + + + + E S+ L +P ++
Sbjct: 22 LIQRYLFRQISLPVVAACASLAGIGILSQSLDQLEVIVER-GQSVWVMVKLTLLALPQLL 80
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P V ++ + R EL + A G++ WQ+++P + L+ I +++
Sbjct: 81 AVILPIGLFVGALIALTRMQREQELTAAFAGGMTRWQVISPAARLAFLVLILNLVMTLFA 140
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + + + ++Q + ++ +++
Sbjct: 141 QPWAQREARNQAFAIRTDLAALLVEEGQFVQGPDGLTVYVQQIEQNGLLKNLFVYLDDGK 200
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + A + + + + + + ++
Sbjct: 201 STQNWSAAEARFGRDAANEPVLTMIDGSWQKYSSRGVLETLSFDRYDFPLGQFSGVTEQI 260
Query: 241 SEQFASRSFYEIIKKM-SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ A +++ + + + I PL + +A + + S
Sbjct: 261 RYKPADLYLRQLLTPSPRVLETAG--SRGELLAEAHARIAAPLYALVAMAMALAAIMGGS 318
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA--LIPVILTISLSILILLQ 357
++ + +G + I + P + ++ ++ ++ +L +
Sbjct: 319 -FSRTGYSLRIAKAAGV-FLLVRVIGYGLVAASAWNPWMNILQYLAPLIVVAAAVRLLFR 376
>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
Length = 487
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 59/154 (38%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K ++ + +M ++ + L + +++ + A L
Sbjct: 1 MKKLHIFMLKSFIGPFVATFFISMFVLIMQFLWRMIDEIVGK-GLEFTVIAELLIYVATT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +I+ F +L EL+ ++ GIS+++++ P ++ I L +F + N
Sbjct: 60 LVPMALPLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLTVFAFVFSN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
I L+ + + +
Sbjct: 120 NILPVANLKFYSLLYDIRKQKPEMSFKEGIFTND 153
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/100 (11%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + +++ +++ + I A + R + V + +
Sbjct: 357 HYYVAQQENVIKSQLEWHRKFTLSFACFIFFFIGAPLGA-IIRKGGLGMPVVVSVLLFII 415
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
Y I + + + ++ P A I + + L I++ +
Sbjct: 416 YYIISMMGERSAREAVISPAAGMWISAFILLPLGIILTYK 455
>gi|218768538|ref|YP_002343050.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis Z2491]
gi|121052546|emb|CAM08886.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis Z2491]
gi|308389704|gb|ADO32024.1| hypothetical protein NMBB_1799 [Neisseria meningitidis alpha710]
gi|319410787|emb|CBY91172.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis WUE 2594]
gi|325128631|gb|EGC51500.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
gi|325130631|gb|EGC53374.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
OX99.30304]
gi|325144870|gb|EGC67158.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240013]
gi|325201754|gb|ADY97208.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240149]
gi|325204534|gb|ADY99987.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240355]
gi|325205695|gb|ADZ01148.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M04-240196]
Length = 371
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTIPTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|187477637|ref|YP_785661.1| permease [Bordetella avium 197N]
gi|115422223|emb|CAJ48747.1| putative permease [Bordetella avium 197N]
Length = 372
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/321 (9%), Positives = 95/321 (29%), Gaps = 11/321 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
LAA + I+ + + R SE+V+ A G+S+ +
Sbjct: 42 GTIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWVR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISN 157
P + +I + + + A + + ++++ D K + ++
Sbjct: 102 PVLRVAIPVALMVAGLTLVAAPWAYRQIGEYRERFEQRSDLSKVAAGQFAESGRGNRVFF 161
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
+ + G + + + K+ + + K +
Sbjct: 162 AEDPVDPGDELGAVFARAIDPEWFSVLTAKSARGETLENGDRFLVLSKGHRYDLKPGTPE 221
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ + + K S + A+ + + + +
Sbjct: 222 VRLTNFEEYGIRLESKGGEDPIASARAAAERSSKARSTTQLMEDNTNSSWSQVMWRVSLP 281
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+ + + + A R + ++ G+ G + +I + +++ SG L
Sbjct: 282 LAALNLALLAIPLGA----VNPRLGRSGDLLIAGL-VGLLYINLINLSRAWISSGKLPFG 336
Query: 338 AAALIPVILTISLSILILLQK 358
I+ ++ ++ +L ++
Sbjct: 337 VGVSAIHIIVLAFTVFLLYKR 357
>gi|168701113|ref|ZP_02733390.1| hypothetical protein GobsU_16419 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/414 (12%), Positives = 125/414 (30%), Gaps = 60/414 (14%)
Query: 1 MPGI-LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L R F ++ L L LV V+ + +Q+ S+++ V
Sbjct: 1 MFGTTLNRMIFWELVRVFLLSLGSLTGLVLVVMSVQQASQL----GLSLAQLVRAVPLLV 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+ IP TL VV+ L +E++ +A G+ ++ ++ P ++ +L T +
Sbjct: 57 PSILPIAIPATTLFAACVVYGRLAHDNEVIALKAAGVHLFGIVKPTLLLGVLTTATTAAL 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +++ D I + ++ + +++ + +
Sbjct: 117 AHSTIPRTQQMFWDEILSDPEEVLYNMIRRDRCLRHPSLPNVLYVRDVEGKRLIDVVVKR 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKV---------------------------- 211
D + D+ ++ V
Sbjct: 177 RIKEKDPRTGAEVVMGYDMVARMHEAQLRVDVAAGTLSIEPDRLVIDGKNASGSAASSGA 236
Query: 212 -VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
V + + + + ++ + A + + + + N RA
Sbjct: 237 FVMDLPDSVTGKEARLKTSTLTWDELPERAAGVAAKLDRITRERAARQAEINQMDPNLRA 296
Query: 271 ETQFYFLIV-----------------------IPLMLVAMTLIAASVSLEFSRSNQPRII 307
Q + + + L+ V + +RS+
Sbjct: 297 NAQAQIEGYNFEIAGTTKQLRNLQAEVHARPALAVSCLVFALVGCPVGVYLNRSDYLSTF 356
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI---LLQK 358
+ + + + Y ++ GKSG L I+ ++ +L+ LL++
Sbjct: 357 MMCFLPTLLVYYPLLLAGTDMGKSGRLPMALGCWAADIVMGAVGVLLAWRLLRR 410
>gi|46199050|ref|YP_004717.1| hypothetical protein TTC0744 [Thermus thermophilus HB27]
gi|55981077|ref|YP_144374.1| hypothetical protein TTHA1108 [Thermus thermophilus HB8]
gi|46196674|gb|AAS81090.1| hypothetical conserved membrane spanning protein [Thermus
thermophilus HB27]
gi|55772490|dbj|BAD70931.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 368
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/355 (10%), Positives = 88/355 (24%), Gaps = 20/355 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L LL + L + + + VP I
Sbjct: 2 ILHRYLLRESLPVLLLALLFLTAVYLFGFFYAGAR---WLEGVPLPKILRWLSYHVPGIW 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P + ++VF L + GI + + P V +L + + +
Sbjct: 59 VQVFPIALVTTTVLVFGRLAAEGAHFALLSAGIPLGRAALPLVAVGAVLSGLALYLQEYV 118
Query: 124 AT-SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + G + I + F E
Sbjct: 119 VPEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGKSLYFQDFDMAAKEMVGVRITAFQ 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV----------------VEYQYGRIPIDKNST 226
R + + + +V + R+ +
Sbjct: 179 GEVGTFLFAERGTWEDKTLTLKDYRYYQVDFAQVPGLETAPDLLAQVRRVFRVVSQGKTL 238
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ + S + + + + + + L L
Sbjct: 239 EVTSDLSRARAIADYADTFSFGQDSLSEAWRKLKDPFLPPLEKWRARLELHSKLALPLAN 298
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ L+ + ++ P + + + Y + ++ G L P A
Sbjct: 299 LVLVLLAAAMALRYGKSPGLALGMSVVLALAYYGAFFLGRALAGIGALPPELGAW 353
>gi|256420369|ref|YP_003121022.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
gi|256035277|gb|ACU58821.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
Length = 478
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 1/156 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K ++ + + ++ + L + + + L
Sbjct: 1 MKKLDKLLIKTFMGPFVATFFVTLFVLVMQFLWKYIDDLVGK-GLDTPVIIELITYTSAN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +I+ F NL + ELV ++ GIS+ + + P + ++ I L N
Sbjct: 60 LVSLALPLAVLLSSIMTFGNLGESFELVALKSSGISLTRFMRPLLAVCTMIAILAFLFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
L+ ++ +
Sbjct: 120 YAMPVANLRAKSLLYDITNSKPAFNIKAGVFYTDIP 155
Score = 41.6 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 7/88 (7%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ ++ + + M LI A + R + + + + + +
Sbjct: 359 HKVEWQRKFTLAFSCIVMFLIGAPLG-SIIRKGGLGTPLIFAVVFFVIFNIFFMVGEKMA 417
Query: 330 KSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ + + I+ I +++ ++ +
Sbjct: 418 RKDVMATWSGMWLSNIVLIPIAMFLIYK 445
>gi|227536228|ref|ZP_03966277.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
33300]
gi|227243835|gb|EEI93850.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
33300]
Length = 494
Score = 65.1 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/279 (11%), Positives = 88/279 (31%), Gaps = 5/279 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + ++K + M ++ ++ L + + + + L +
Sbjct: 1 MKKI-HLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGK-GFEWYVILQLIGYQCA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +Q +P L+ +I+ F NL + ELV +A G+S+ + + P + L + L
Sbjct: 59 VQMQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I L+ ++ + K + +
Sbjct: 119 DYILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYD 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ N ++ K+ + ++ V+ + G + F +F
Sbjct: 179 HTSGSSSNNVLLAKEGFVQNSPDNNYM---VLRLKDGIRYEESKGKDSKSYDPRKQFVRF 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + F +M ++++ ++ +
Sbjct: 236 QFKETEQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMY 274
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 1/221 (0%)
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+++ +QK D+ + + + ++ + D
Sbjct: 234 RFQFKETEQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMYTDSNHRQMDSVGRMAEHDI 293
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
Y ++ ++ KN +P S SR E +
Sbjct: 294 RNYYNYYSNYFRSPGMKIVPAKVKPFKNLLEDVVPATERRQIVGSAMTQSRYITETLGNK 353
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+ K+ + R +F+ + + + + I A + R + V I
Sbjct: 354 TLEYKAFRDKDIRYRLEFHRKFTLAVSCLLLFGIGAPLGA-IIRKGGLGLPVVMAIIFFL 412
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I T+ + K L P+ + +I+ L+I + +
Sbjct: 413 IYHIISTVSEKAAKDASLAPMTGMWMAIIILTPLAIFLTYK 453
>gi|59801587|ref|YP_208299.1| hypothetical protein NGO1228 [Neisseria gonorrhoeae FA 1090]
gi|194097861|ref|YP_002000906.1| hypothetical protein NGK_0281 [Neisseria gonorrhoeae NCCP11945]
gi|239998342|ref|ZP_04718266.1| hypothetical protein Ngon3_02533 [Neisseria gonorrhoeae 35/02]
gi|240014487|ref|ZP_04721400.1| hypothetical protein NgonD_07553 [Neisseria gonorrhoeae DGI18]
gi|240016933|ref|ZP_04723473.1| hypothetical protein NgonFA_07151 [Neisseria gonorrhoeae FA6140]
gi|240079727|ref|ZP_04724270.1| hypothetical protein NgonF_00199 [Neisseria gonorrhoeae FA19]
gi|240117144|ref|ZP_04731206.1| hypothetical protein NgonPID_01570 [Neisseria gonorrhoeae PID1]
gi|240121009|ref|ZP_04733971.1| hypothetical protein NgonPI_04421 [Neisseria gonorrhoeae PID24-1]
gi|268602832|ref|ZP_06136999.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|59718482|gb|AAW89887.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193933151|gb|ACF28975.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|268586963|gb|EEZ51639.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|317163631|gb|ADV07172.1| hypothetical protein NGTW08_0198 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 371
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|149915564|ref|ZP_01904090.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
gi|149810456|gb|EDM70299.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
Length = 376
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/365 (12%), Positives = 110/365 (30%), Gaps = 16/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +Y + + +F L + + ++ + ++ + + +P
Sbjct: 1 MTK-FDQYVIRKLITLFAFFALILIAIFWLDKALRMFERLLGKGQSNWLLLEL-ILLTLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + + V L+ +E+ I +A G S ++++ P + IL +
Sbjct: 59 PVVASILPIASFASAVSVTNRLSSEAEITIMKASGCSTYRIIRPIFIFGILTTSLMAWLT 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I K L Q N ++ + + I+
Sbjct: 119 NSILPESGKRLSSLRSQVDQNITSSFLTEGEFLHPTPGVTLFIGKVTQDAELRRIFLSDR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDG 236
+ + + + + + + L+I ++
Sbjct: 179 RDLRETIIITAEKAYTEHSPTTVQLLMVDGTTQILRENDNKLFVGRFEEYALDISELVET 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--V 294
+ E+IK+ S S + + P++ ++ A+ +
Sbjct: 239 TYSTQKTVTQAKTVELIKQPSEVIASTKATLGEVAFELHNRFAQPILCAIAAVLGATTLL 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PVAAALIPVILTISLS 351
+ +SR R I F L + +++S + +L +P I L
Sbjct: 299 TGSYSRFGVWRQ-----IGIAFFLLVGLKLVESAVSAHVLNDSGLWFLMYVPSISGAVLI 353
Query: 352 ILILL 356
I+
Sbjct: 354 CTIIY 358
>gi|226951739|ref|ZP_03822203.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|226837529|gb|EEH69912.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
Length = 340
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 52/327 (15%), Positives = 118/327 (36%), Gaps = 6/327 (1%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
L +I + + + A R+P + I+P + ++VF L E+ +
Sbjct: 4 QLIKIFGRAAQ-GRLDGGVLLSIIAYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVL 62
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
G+S QL + + + I +++ A++G + L+Q
Sbjct: 63 NGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGASAGIRGYQSLMQTQAVRAGFDLVRPKE 122
Query: 152 WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
++ + ++ I+ + S DK +++I K+A I ND + +
Sbjct: 123 FISSGSYTIYAGSLSEDRKNLKDIFYYYKSDREDKPDQMILAKEATRVEIENDTASVVDL 182
Query: 212 VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
V+ + I ++ T + + S E ++ +S S ++
Sbjct: 183 VQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDVNFES--EDVEALSMSKLWQKRDDFVVR 240
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ + I P ++V +A ++S R + ++ IF L ++ +K+
Sbjct: 241 GELGWRIFGPFVMVVALFLAVALSEVSPRQGRYYRLIP-AIFIFASLIVLMIAIKTRISK 299
Query: 332 GILLPVAAALIPVILTISLSILILLQK 358
L A V+L ++ + +K
Sbjct: 300 EELDIW--AYPAVLLIYGIAAALFTRK 324
>gi|149201833|ref|ZP_01878807.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
gi|149144881|gb|EDM32910.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
Length = 373
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/345 (10%), Positives = 105/345 (30%), Gaps = 11/345 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIG-DGQPAWVFVEFTALTLPGVIGVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S +L P V +++ + L+ + + S
Sbjct: 60 IAAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVFVFGVIVAVMMSLLAHFLIPSSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW----EDFTSITI 184
+ + N + ++ + ++ D +
Sbjct: 120 SQLRLRLDEVSRNITAKLLSEGEFLHPAPGVTFYIREITLSGELRDVFLSDRRDPEAPVT 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ ++ + + + Q + + +I + ++
Sbjct: 180 YTSSRAYLVQEGGGTRLVMVSGLAQNIRAEQNRLFTTYFDDFSYDISSLVRRDVVNLDEV 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--VSLEFSRSN 302
A E+++ Q + I L+ V L+ + SR
Sbjct: 240 AFAGTLEMLRDPEAVAARTGVSMGAVMAQMHGRITAALLCVIAALVGFCTLLVGAHSRFG 299
Query: 303 QPRIIVA-YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
R ++ +G+ G + + + + + + +P ++
Sbjct: 300 VWRQVLLAFGLLVGLKIVESLVLAPVLASAVLWPLL---YLPALI 341
>gi|255009764|ref|ZP_05281890.1| putative permease [Bacteroides fragilis 3_1_12]
gi|313147551|ref|ZP_07809744.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136318|gb|EFR53678.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 634
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/268 (12%), Positives = 78/268 (29%), Gaps = 4/268 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L + +++ +S A +
Sbjct: 5 KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGK-GLEMSVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P +V + + N
Sbjct: 64 VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPRAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDR---KTGMLYDVIIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
AD + K + G + + + +++ + F E
Sbjct: 181 DFSNNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ F S SN
Sbjct: 241 KHTIIQFDSDFNMADASIMSNQSTTKDM 268
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ SF+ N R + +++ I I L + I A + R +
Sbjct: 347 NLSSDWGFKSFTMAQNDLSIRRHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMP 405
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V +F+ + Y I + G + + + L + +
Sbjct: 406 VIVSVFTFIIYYIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455
>gi|254458642|ref|ZP_05072066.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
gi|207084408|gb|EDZ61696.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
Length = 355
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 115/348 (33%), Gaps = 6/348 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +YLK L+ ++ + D E + + + + + I
Sbjct: 3 FKYISFHYLKYFSVILIALVMFLVGFDYMENASSLSSS----ANLVLIYLVYKAFFAIDM 58
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + I L R++ LV ++G S +L PFVV S + + V + +
Sbjct: 59 LLPLSLIFAMITTKIFLIRSNALVSFYSLGYSRVDVLKPFVVVSTTIIVIFVSLHAIPSF 118
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTSITI 184
S + I++ K + + ++ ++ + +
Sbjct: 119 SRADEFSNNIRKNAAYLSPTKDLFFTYKDKYIYFAQMLPLQERAEGIRVFSIKENSLKEV 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ +R ++ + K + G + + + + E
Sbjct: 179 LVAKEATYRNESWHIAQADVITKPDNMSFESKGIKVDHEKGLDILHGFRPKMLDQVYEGK 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + I + + NI + + Y + + P + + +I +R
Sbjct: 239 VNFTIKNAIDALLLLSDQNI-NTRSIKGALYKIFIYPFFVPCLVVIIFFFVPISARFLNV 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + +++ I+ ++ + + A + PV++ +++
Sbjct: 298 SLFSFGAILATLLVWGILFMLIELSNNKTIPSEAGVVAPVVILFLIAL 345
>gi|88800548|ref|ZP_01116110.1| predicted Permease [Reinekea sp. MED297]
gi|88776693|gb|EAR07906.1| predicted Permease [Reinekea sp. MED297]
Length = 350
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/353 (13%), Positives = 121/353 (34%), Gaps = 9/353 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY + +K ++ L +IL+ ++++ ++ +S + V+ +VP+++
Sbjct: 2 TLYRYLYGQIMKPFVFMTLVLLILLIATEISDTLTKIL-TGQFSDNALWVVIGFQVPILL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSILLGIFTVLVINP 122
Q+I+P + + L++ SE I AIGIS LL V ++ + + + +
Sbjct: 61 QEILPAAFFLACLTTLHRLSQDSERAILHAIGISDGDLLRFLLVFAALPAMLLVLALNHY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I ++ + + + D + I A + + ED +I
Sbjct: 121 ITPKAQENLELYVTEQLNRPITDIIDANSFYNIGAINATF--YAARNNSQTQSLEDVFTI 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + + + ++ + + + + Q E
Sbjct: 179 AKSQSSYTVTAAKEVRTQGAENAQYFQ---FFEGEQTQFSFDESEPLQTQRFGMMQLRIE 235
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + S ++ ++ + + + L L + A ++ RS
Sbjct: 236 EDGNASPWQRRNALTSFELAKSEDRHD-QLTLISRFATSLYLPLFCIWAVVLTRFKPRSA 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +A GI + + L + ++ ++++ L
Sbjct: 295 KVG-AMALGIVLYILTNFAYRTLHGAVGRSDLSILFQPWWFFVVLGVIALITL 346
>gi|317401899|gb|EFV82506.1| permease [Achromobacter xylosoxidans C54]
Length = 385
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 118/355 (33%), Gaps = 6/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R +I+ + L + + N VLAA + I
Sbjct: 25 RSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAG-GNIGADVVLVLAALSTITALPTI 83
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + + R SE+V+ A G+S+ L P + ++ + I + A
Sbjct: 84 LAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVAIAVAGLTLVAAPW 143
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + ++++ D K + S +F P + + F T +
Sbjct: 144 AYRQIGEYHERFEQRSDLSKVTAGQF-AESAGGNRVFFAEDPAKPTDELGNVFARETGPE 202
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK---MDGFQKFSEQ 243
++ A + N L ++Y P ++ ++
Sbjct: 203 WLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFEKYGLRLESKGGDDPV 262
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+R+ E K + + + + +Q + I +PL + + L+A + R +
Sbjct: 263 AEARAAAERSSKARTTPQLMADNTSSSWSQVMWRISLPLAALNLALLAIPLGAVNPRLGR 322
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ G+ G + +I + +++ +G L + ++ + +L+++
Sbjct: 323 SGDLLIAGL-VGLLYMNLINLSRAWISNGKLSFGVGTVAIHVVVAMFTAFLLMRR 376
>gi|240122360|ref|ZP_04735316.1| hypothetical protein NgonP_00185 [Neisseria gonorrhoeae PID332]
gi|240125094|ref|ZP_04737980.1| hypothetical protein NgonSK_02547 [Neisseria gonorrhoeae SK-92-679]
gi|254494457|ref|ZP_05107628.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268680947|ref|ZP_06147809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|226513497|gb|EEH62842.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268621231|gb|EEZ53631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 371
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 112/352 (31%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|253564060|ref|ZP_04841517.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251947836|gb|EES88118.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301161640|emb|CBW21180.1| putative permease [Bacteroides fragilis 638R]
Length = 636
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/268 (12%), Positives = 79/268 (29%), Gaps = 4/268 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L + +++ +S A +
Sbjct: 5 KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGK-GLEMSVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P +V + + N
Sbjct: 64 VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDR---KTGMLYDVIIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
AD + K + G + + + +++ + F E
Sbjct: 181 DFSNNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + F S SN
Sbjct: 241 KHSIIQFDSDFNMADASIMSNQSTTKDM 268
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ SF+ N F + + +++ I I L + I A + R +
Sbjct: 347 NLSSDWGFKSFTMTQNDFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMP 405
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + + Y I + G + + + L + +
Sbjct: 406 VIVSVLTFIIYYIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455
>gi|53711884|ref|YP_097876.1| hypothetical protein BF0593 [Bacteroides fragilis YCH46]
gi|60680112|ref|YP_210256.1| putative permease [Bacteroides fragilis NCTC 9343]
gi|52214749|dbj|BAD47342.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60491546|emb|CAH06298.1| putative permease [Bacteroides fragilis NCTC 9343]
Length = 636
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/268 (12%), Positives = 79/268 (29%), Gaps = 4/268 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L + +++ +S A +
Sbjct: 5 KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGK-GLEMSVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P +V + + N
Sbjct: 64 VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDR---KTGMLYDVIIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
AD + K + G + + + +++ + F E
Sbjct: 181 DFSNNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + F S SN
Sbjct: 241 KHSIIQFDSDFNMADASIMSNQSTTKDM 268
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ SF+ N F + + +++ I I L + I A + R +
Sbjct: 347 NLSSDWGFKSFTMTQNDFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMP 405
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + + Y I + G + + + L + +
Sbjct: 406 VIVSVLTFIIYYIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455
>gi|257462588|ref|ZP_05626998.1| hypothetical protein FuD12_01969 [Fusobacterium sp. D12]
Length = 270
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/266 (10%), Positives = 70/266 (26%), Gaps = 3/266 (1%)
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
+IG+ I +L P + F + + I L + +
Sbjct: 1 MNSIGMDIRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKER 60
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+M + I + + ++
Sbjct: 61 TFMNNLENYSLYIDKVGRDKHAKGILIFENDKKSTFPVVL--VGHEAYWRDSSIVLEKAN 118
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + + S F + I +
Sbjct: 119 FISFDEKGVRKLTGSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEEKLIY 178
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ + + + +P V ++++ +S+ RS + + GI + F +++ I
Sbjct: 179 KVEIHRKLALPFSSVMLSMLGVFLSIGHQRSGKKA-GILVGILTIFFYISLLNIGIVLAN 237
Query: 331 SGILLPVAAALIPVILTISLSILILL 356
G + + +P +L +L+ + L
Sbjct: 238 VGKIPILLGVWLPNLLLAALTYRLYL 263
>gi|71083418|ref|YP_266137.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062531|gb|AAZ21534.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1062]
Length = 378
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/374 (12%), Positives = 120/374 (32%), Gaps = 17/374 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+++ K + L + I+++V+ + + E + P
Sbjct: 1 MKKIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGH-GFLVYFKYTLLSFP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +I PF + + +ELVI GI +N F+ S+ + ++L+
Sbjct: 60 KIISRIFPFAIFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + I+ + + ++ I F K +I+ +
Sbjct: 120 AVITPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEK 179
Query: 181 SITIDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + + I D + I+ K V+ + K ++
Sbjct: 180 TDINNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKTDYNISKFNSNTI 239
Query: 237 FQKFSEQFASRSFYEIIKK------------MSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ +++ + + + + + + + Y +V PL +
Sbjct: 240 TYQKTQEAKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLKNVYKELYSRLVKPLYI 299
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ I+ L+ + I F+ + + ++ + ++ P+
Sbjct: 300 TFLISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFLESSSKLISTNLMQNIFLSIFPL 359
Query: 345 ILTISLSILILLQK 358
ILT+ + + +++
Sbjct: 360 ILTLIIYLYFVIKL 373
>gi|265765250|ref|ZP_06093525.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263254634|gb|EEZ26068.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 636
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/268 (12%), Positives = 79/268 (29%), Gaps = 4/268 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L + +++ +S A +
Sbjct: 5 KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGK-GLEMSVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P +V + + N
Sbjct: 64 VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDR---KTGMLYDVIIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
AD + K + G + + + +++ + F E
Sbjct: 181 DFSNNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + F S SN
Sbjct: 241 KHSIIQFDSDFNMADASIMSNQSTTKDM 268
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ SF+ N F + + +++ I I L + I A + R +
Sbjct: 347 NLSSDWGFKSFTMTQNDFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMP 405
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + + Y I + G + + + L + +
Sbjct: 406 VIVSVLTFIIYYIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455
>gi|187918662|ref|YP_001884228.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
gi|119861510|gb|AAX17305.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
Length = 355
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 105/347 (30%), Gaps = 3/347 (0%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+ F T L+ +IL+ + DL + N SIS + +P
Sbjct: 4 DKLFVNNISLTFLFMNFLFVILIVLFDLFTNLFTYLD-HNLSISDIIYIYYLYLPKCFSD 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ L + NL+ +E++ + GISI ++L ++ S+ + + N +
Sbjct: 63 GLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVLLFFFDNYLVI 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ + +II + + N +
Sbjct: 123 DTVTKRDAFLKNSIGSKGANDRNIIIKDFAREIYNIRHYDIENDIIANLMIILKDQNDNF 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
KK I + + + V+ VE + + ++ + +
Sbjct: 183 KKRYDISKAEWTNSRWRLYGVREFSKVERDVIEKFHEVLDGGGIVNLEPEYIKIIMLSSK 242
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +F ++I + + N+ + F + + + + N
Sbjct: 243 TLNFSKLISWIGALRRENLDSSEALFDFFSRIFFS--FRLILLSFTVGFVSFALKKNIFI 300
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + I + G L A+ +P IL I ++
Sbjct: 301 WSLLNSIAFAVVYVISIMVFSFLADLGYLPIFVASSLPTILFIIINF 347
>gi|298372198|ref|ZP_06982188.1| permease [Bacteroidetes oral taxon 274 str. F0058]
gi|298275102|gb|EFI16653.1| permease [Bacteroidetes oral taxon 274 str. F0058]
Length = 490
Score = 64.7 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/241 (11%), Positives = 78/241 (32%), Gaps = 3/241 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M GI L Y + ++ + ++ ++ + + + M I A
Sbjct: 1 MLGIKKLDLYVLRQFMTLLVVTFFISLFVIVMQFIWLRLDDMMGK-GIPIETMAKFFFYS 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P L+ +++ F N+ EL+ + GIS+++++ ++ ++ I
Sbjct: 60 SLAFTPMALPLAILLASLMTFGNMGERFELIAMKTAGISLFRIMRSLMIFIAMIVIGAFF 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + +K L+ +KD + + + + G
Sbjct: 120 YSNYVIPMAQKRMWTLVYSFKDKALEIEIPVGEFYTGIRGVNIYARGRDTDKKAMTNVMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + ++ + K + + + + IP + + F+
Sbjct: 180 YDFTKGFQSASVTAADTVRISTTEDKKYLKIDMKNGECFENVQQQQVGSNTIPYRRESFK 239
Query: 239 K 239
+
Sbjct: 240 Q 240
>gi|291514071|emb|CBK63281.1| Predicted permeases [Alistipes shahii WAL 8301]
Length = 500
Score = 64.3 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 74/247 (29%), Gaps = 3/247 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ R K YL + M ++ + + +++ S L +
Sbjct: 1 MKTIHRLVLKSYLGPMVLTFFIVMFVLMMNIVWRYIDELVGK-GLSAGIIIELMTYFMAN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P L+ I+ NL EL+ ++ G+S+ Q+ P ++ L+ + + + N
Sbjct: 60 MIPMGLPLSMLLAAIMTMGNLGENYELLAMKSAGMSLVQITKPLIILVSLVSVGSFFIGN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + K + + + + + + H + +
Sbjct: 120 NLVPNANKKLFSTLYDIRQQKQALEFQDGLFFNGIDNMSIRVSHQEPDTHLLHDVLIYDN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I + + + K L V + +NS
Sbjct: 180 RAANGNMNTIVADSGYIRLSDDKKYLL--VTLFHGETYEQTRNSQWFTKSALRHHTFDLQ 237
Query: 242 EQFASRS 248
+Q S
Sbjct: 238 KQVIPMS 244
Score = 45.1 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
YR++ +++ + +P+ ++ LI A + R + V + + Y I +
Sbjct: 365 YRSKVEWHKKMSLPVSILIFFLIGAPLGA-IIRKGGLGLPVVVSVIFFVIYYMISLSGEK 423
Query: 328 FGKSGILLPVAAALIPVILTISLSILILLQ 357
K G V + + ++I + +
Sbjct: 424 LAKEGNWEAVYGMWLSTFILTPIAIYLTYK 453
>gi|306842048|ref|ZP_07474721.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
gi|306287889|gb|EFM59309.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
Length = 371
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/323 (11%), Positives = 97/323 (30%), Gaps = 8/323 (2%)
Query: 39 QMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI 98
+ ++ +P I ++PF ++ +N+ SELV+ A G
Sbjct: 6 NFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPR 65
Query: 99 WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------ 152
++ P ++ + + + + L+ N + +I + +
Sbjct: 66 SAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHVIIQEGTFRKLADN 125
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
+ I ++ + + I I D+ ++ N +V+ + V
Sbjct: 126 LYIQVAERRADGSIGGLFIADSRDPTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVS 185
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ I D + LN + ++ ++
Sbjct: 186 DGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYRAELH 245
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + + PL+ AM +A + R + I + ++Y
Sbjct: 246 RRFTQWIYPLI-FAMIALAIAGDSRSHREARVSAS-FSAISTALLVYWAGYFASDRADKD 303
Query: 333 ILLPVAAALIPVILTISLSILIL 355
+ L+P+++ + ++L
Sbjct: 304 SSYILVMYLVPLVVFLVTGFILL 326
>gi|300772186|ref|ZP_07082056.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300760489|gb|EFK57315.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 494
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/279 (11%), Positives = 89/279 (31%), Gaps = 5/279 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + ++K + M ++ ++ L + + + + L +
Sbjct: 1 MKKI-HLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGK-GFEWYVILQLIGYQCA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +Q +P L+ +I+ F NL + ELV +A G+S+ + + P + L + L
Sbjct: 59 VQMQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I L+ ++ + K + +
Sbjct: 119 DYILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYD 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ N ++ K+ + ++ V++ + G + F +F
Sbjct: 179 HTSGSSSNNVLLAKEGFVQNSPDNSYM---VLKLKDGIRYEESKGKDSKSYDPRKQFVRF 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + F +M ++++ ++ +
Sbjct: 236 QFKETEQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMY 274
Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 1/221 (0%)
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+++ +QK D+ + + + ++ + D
Sbjct: 234 RFQFKETEQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMYTDSNHRQMDSVGRMAEHDI 293
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
Y ++ ++ KN +P S SR E +
Sbjct: 294 RNYYNYYSNYFRSPGMKIVPAKVKPFKNLLEDVVPATERRQIVGSAMTQSRYITETLGNK 353
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+ K+ + R +F+ + + + + I A + R + V I
Sbjct: 354 TLEYKAFRDKDIRYRLEFHRKFTLAVSCLLLFGIGAPLGA-IIRKGGLGLPVVMAIIFFL 412
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I T+ + K L P+ + +I+ L+I + +
Sbjct: 413 IYHIISTVSEKAAKDASLAPMTGMWMAIIVLTPLAIFLTYK 453
>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254547819|gb|ACT56866.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 361
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 8/358 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
Y + ++ L L + + +VI + + N + S++ ++ +P
Sbjct: 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + PF + V ++NR +EL+I G S L+ P + +ILL IF + N
Sbjct: 60 VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKILPENHIWEDF 179
I L + + + + + + L I +
Sbjct: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ T D D I + ++ + + S TL
Sbjct: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF + + + + YR+E + ++ + I A+
Sbjct: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
Query: 300 RSNQPRIIVAYGIFSGF-MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + F + + I+ ++ +P+ + L SI +L+
Sbjct: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY----LFLFCISSIFLLM 353
>gi|91762159|ref|ZP_01264124.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717961|gb|EAS84611.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
Length = 378
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/374 (12%), Positives = 120/374 (32%), Gaps = 17/374 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+++ K + L + I+++V+ + + E + P
Sbjct: 1 MKKIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGH-GFLVYFKYTLLSFP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +I PF + + +ELVI GI +N F+ S+ + ++L+
Sbjct: 60 KIISRIFPFTVFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + I+ + + ++ I F K +I+ +
Sbjct: 120 AVITPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEK 179
Query: 181 SITIDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + + I D + I+ K V+ + K ++
Sbjct: 180 TDINNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKIDYNISKFNSNTT 239
Query: 237 FQKFSEQFASRSFYEIIKK------------MSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ +++ + + + + + + + Y +V PL +
Sbjct: 240 TYQKTQETKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLENVYKELYSRLVKPLYI 299
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ I+ L+ + I F+ + + ++ + ++ P+
Sbjct: 300 TFLISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFLESSSKLISTNLMQNIFLSIFPL 359
Query: 345 ILTISLSILILLQK 358
ILT+ + + +++
Sbjct: 360 ILTLIIYLYFVIKL 373
>gi|218264803|ref|ZP_03478497.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
DSM 18315]
gi|218221776|gb|EEC94426.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
DSM 18315]
Length = 655
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 3/273 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L+ + + +L L + +V + L + M I A +
Sbjct: 1 MLKIKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYA 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P ++ ++ I
Sbjct: 60 ALFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISMISIGAFF 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + L+ + + +
Sbjct: 120 FQNYAMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K ++ L + + + + R ++STT +
Sbjct: 180 YDYSEGFNKVSVMVADSGRLKTSADKMFLVLSLFNGESFRSLDKQSSTTGAKSSVPYQRE 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
F + F + S N F
Sbjct: 240 TFKSRDILIEFDANFSRTDESFMQNQFMGKNMH 272
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I I
Sbjct: 387 YRVRRHLTEWHKKFTLSFACMVFFFIGAPLGA-IIRKGGLGMPVVISVILFIFYYIIDNI 445
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + + L I + +
Sbjct: 446 GFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478
>gi|240116444|ref|ZP_04730506.1| hypothetical protein NgonPID1_09463 [Neisseria gonorrhoeae PID18]
gi|260441666|ref|ZP_05795482.1| hypothetical protein NgonDG_11382 [Neisseria gonorrhoeae DGI2]
gi|268602116|ref|ZP_06136283.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268586247|gb|EEZ50923.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 371
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 113/352 (32%), Gaps = 6/352 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q ++P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK + ND + ++ + K++ + +
Sbjct: 180 QDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPK 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ + S+ + + + + I + + ++ + L+A +S RS
Sbjct: 240 LIDPVSHRRTISTAQLIGSSNP---QHQAELMWRISLTVSVLLLCLLAVPLSYFNPRSGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + +T++ + G + L I+ ++I++L
Sbjct: 297 T-YNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLL 347
>gi|320101900|ref|YP_004177491.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
gi|319749182|gb|ADV60942.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
Length = 392
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/378 (12%), Positives = 115/378 (30%), Gaps = 31/378 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG---AVLAATRVP 60
IL R + ++K + + L VI ++ G+ + R+
Sbjct: 7 ILDRQRYWSFVKAYVICFSSLVGLYIVIHAFANVDEFGKAAPGLMGVVRAMGFYYLIRIS 66
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q+ I ++ I + + ++LV A GIS + + P +V S+L+ + V+
Sbjct: 67 QYYDQLCGVIAMMAAIFTVTFMQKDNQLVAMLAAGISTHRAIRPVLVCSVLVSLLAVINQ 126
Query: 121 NPIATSGE-----------------KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
I + DL + ++ + + P
Sbjct: 127 ELILPRFQTELSLKPDDDGKRPLPVSNLYDLNEIPIHGRKADRARRAMILNATLPIGLTG 186
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ + K ++ + ++ LKK+ ++ P
Sbjct: 187 TLRELEARDALHIPHDHPTAPLKGGWLLRGATISPPLEEDEVGPLKKLSRHELNGFPPST 246
Query: 224 ---------NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFS-NKSNIFHNYRAETQ 273
+ + + + + + ++ + SN + Q
Sbjct: 247 LSQAELGGSDEQSYFFFTNITFEMLTRDPKEWMQYASSGQLIAALGDPSNAADHLAISIQ 306
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
+ ++ P + +A+ L I + Y + + + Y + + + G
Sbjct: 307 LHQRLLRPFLSLALLCAVLPSVLGGPNR-NMFISLGYALGTTALFYGGLFLFQYLATRGA 365
Query: 334 LLPVAAALIPVILTISLS 351
+ P+ AA P+ + L+
Sbjct: 366 ISPIDAAFAPLAVFSLLA 383
>gi|297250819|ref|ZP_06934296.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837907|gb|EFH21845.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 181
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 2/176 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGNLGK-GSYNGAKLGQYVLMQMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 60 HAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
IA + + ++ NG + W++ I +
Sbjct: 120 WIAPALSQKAENIKAAAI-NGKISAGNTGLWLKEKTALSMCAKCCPTIRFWASKFG 174
>gi|16125936|ref|NP_420500.1| hypothetical protein CC_1691 [Caulobacter crescentus CB15]
gi|221234699|ref|YP_002517135.1| hypothetical protein CCNA_01762 [Caulobacter crescentus NA1000]
gi|13423102|gb|AAK23668.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963871|gb|ACL95227.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 379
Score = 64.3 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/306 (11%), Positives = 95/306 (31%), Gaps = 7/306 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L TL + L + + + E S + +P
Sbjct: 1 MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQR-QSALVFLKIILLALPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V +V L+ E+V+ A G+S W++++P + +++ + +++
Sbjct: 60 LLGIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVIAALISLISGL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + Q K + + + + +++
Sbjct: 120 WLQPWSARQIRETAFQIKTDVAATLVQPGQFTEPGPGLTVYAQSIDRDNKIQNLFIHQEL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + + T ++ +
Sbjct: 180 PNGAASTYSSREAEIATRKGEPVLIMRHGSNQQFSRDGVLQYTSFDEYTFDLSSLFHSDE 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM--TLIAASVSL 296
+ A R +E+ + + + + + + PL +A+ +AA +
Sbjct: 240 LLHYKIADRYPHELF-FPDLTQEWEQRNKDKLLAEGHSRFAGPLYNIALMSMALAAVLGG 298
Query: 297 EFSRSN 302
FSR
Sbjct: 299 SFSRMG 304
>gi|325103111|ref|YP_004272765.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
gi|324971959|gb|ADY50943.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
Length = 476
Score = 64.0 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/245 (13%), Positives = 72/245 (29%), Gaps = 5/245 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I K ++K M ++ ++ L + + + + L
Sbjct: 1 MKKI-HLLIVKAFIKPFFVTFFIVMFVLLMLFLFKYIDDLIGK-GFEWYVILQLLGYAAA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ +I+ F NL ELV ++ GIS+ + + P + L I +
Sbjct: 59 TNVAMALPLAVLLSSIMTFGNLGENYELVAIKSAGISLQRAMAPLFIMVTGLSIAAFIFS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L+ ++ + + K +
Sbjct: 119 DYMLPVANLKMGSLLYDVRNQKAAFLIEEGVFNNSIPGYSIRVEQKDKDGKTLKDVVIYD 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKV---KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ ++ ++K LK V Y+ N + K D
Sbjct: 179 HTKGSGNTNVLMADTGEMYKTDDEKYLVLVLKHGVRYEESAGQRTYNPRERLVRYKFDET 238
Query: 238 QKFSE 242
+ +
Sbjct: 239 MQKFD 243
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R ++ + + + + I A + R + V + + + I TI +
Sbjct: 363 RYIIEYNRKFTLSVSCLVLFFIGAPLGA-IIRKGGLGLPVVVSVIFFLIYHIISTIGEKM 421
Query: 329 GKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + P+ I + + L + + +
Sbjct: 422 ARDGTISPLLGMWIAIFVLTPLGLFLTYK 450
>gi|330890526|gb|EGH23187.1| hypothetical protein PSYMO_17673 [Pseudomonas syringae pv. mori
str. 301020]
Length = 231
Score = 64.0 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 1/160 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
A G LI + + + + + + +
Sbjct: 121 APQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITY 160
>gi|330975728|gb|EGH75794.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 243
Score = 64.0 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 1/160 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
A G LI Q + + + + + +
Sbjct: 121 APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITY 160
>gi|330883204|gb|EGH17353.1| hypothetical protein Pgy4_30756 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 139
Score = 64.0 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 1/131 (0%)
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ + S S + + N R F+ ++ P + VA
Sbjct: 8 RWDVALSPQLLSTVIMPPESLSISGLWNYAHYLADQG-LSNGRYWLAFWTKVLQPAVTVA 66
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ L+A S RS V G+ GF I ++ P+ A L+P
Sbjct: 67 LVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAA 126
Query: 347 TISLSILILLQ 357
+ +L +
Sbjct: 127 CALAGVYLLRR 137
>gi|317060239|ref|ZP_07924724.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313685915|gb|EFS22750.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 265
Score = 64.0 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/261 (9%), Positives = 67/261 (25%), Gaps = 3/261 (1%)
Query: 96 ISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+ I +L P + F + + I L + + +M
Sbjct: 1 MDIRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKERTFMNN 60
Query: 156 SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
+ I + + ++ + +
Sbjct: 61 LENYSLYIDKVGRDKHAKGILIFENDKKSTFPVVL--VGHEAYWRDSSIVLEKANFISFD 118
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+ S F + I + + + +
Sbjct: 119 EKGVRKLTGSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEEKLIYKVEIH 178
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P V ++++ +S+ RS + + GI + F +++ I G +
Sbjct: 179 RKLALPFSSVMLSMLGVFLSIGHQRSGKKA-GILVGILTIFFYISLLNIGIVLANVGKIP 237
Query: 336 PVAAALIPVILTISLSILILL 356
+ +P +L +L+ + L
Sbjct: 238 ILLGVWLPNLLLAALTYRLYL 258
>gi|194426241|ref|ZP_03058796.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|194415549|gb|EDX31816.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|195183222|dbj|BAG66767.1| putative permease [Escherichia coli O111:H-]
Length = 285
Score = 64.0 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 85/284 (29%), Gaps = 2/284 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 1 MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVS-PGGYRWTQAVLVVLMTLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 60 TLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G+ + + +
Sbjct: 120 WVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYR 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I R + ++ ++ S
Sbjct: 180 DDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELS 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
S S ++ +++ ++ + + P+ +
Sbjct: 240 MPGNSFSVRQLNHYINYLQETGQPS-SEYRLALWEKLGHPIFDL 282
>gi|282860179|ref|ZP_06269254.1| putative membrane protein [Prevotella bivia JCVIHMP010]
gi|282587068|gb|EFB92298.1| putative membrane protein [Prevotella bivia JCVIHMP010]
Length = 633
Score = 63.6 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 1/222 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K + ++ ++ + L + + ++ A +
Sbjct: 4 FKKLDIFIAKQFGMLFTGTFFISLFVLMMQFLWRSIDDLIGK-GLTVDVLAQFFGYMALM 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q +P L+ +++ + NL +SEL ++ GIS++Q + +IL+ I + N
Sbjct: 63 LVPQALPLAVLLSSLMTYGNLGESSELTAIKSAGISLFQSFRGLIATTILITILSFYFQN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +K L+ K + + + + +
Sbjct: 123 NVAPIAQKHIYQLLISMKQKSPELEIPEGVFYDGIPQTNLYVEKKDLNTGHLYNIMVYRM 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ II L K + + ++ +
Sbjct: 183 TDSYEDQAIILADSGMLQSTAEKKHLILNLWNGEWFENMRSQ 224
Score = 43.5 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 8/95 (8%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + + L + I A + R + + + + Y +
Sbjct: 363 GDKLLRQHAIEEINKFTLALTCLIFFFIGAPLGA-IIRKGGLGLPIIISVLVFIIFYILD 421
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + + I ++I +
Sbjct: 422 NTGYKMSRQGDWAIWFGKGLSPAVLIPMAIFFTYK 456
>gi|222823976|ref|YP_002575550.1| permease, YjgP/YjgQ family [Campylobacter lari RM2100]
gi|222539198|gb|ACM64299.1| putative permease, YjgP/YjgQ family [Campylobacter lari RM2100]
Length = 341
Score = 63.6 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 21/357 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++++Y F +L T L +V ++ ++ S+ L +P
Sbjct: 1 MKLIYKYLFNQFLNTMLSLFFTLFTIVSIVFFI-QLAKITSYVEISLLELFQLYIYLLPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + + F+ L+R +E + A+GIS + + F+ + +L F ++V+
Sbjct: 60 ALAFTLPISFFIALTLSFYRLSRENESTVLFALGISPKFIASFFMKIAGVLSAFMLVVVL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + + K + + I + + +N I
Sbjct: 120 VFIPISFELFDNFVDYKKISTKINIKTGEFGQRYGEWLVFINTQDENNVYKNIIMYHPKK 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK+ I+ + L + Y++ +S K
Sbjct: 180 NEDDKEQIILASEGKLENQNGIVSFVLNQGKAYEFKEENWHISSF------------KNL 227
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ ++ K + S++ + +F +I L +A L A S + R
Sbjct: 228 LIKSKLYSKDLNTKHFYDYWSDLNTSKEKAKEFVIYTLIALFPLASVLFALSFGIVTYRY 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ F +T++ P+ A + IL +S+S +K
Sbjct: 288 EKGFAYFGI-FAVIFAYFTLLVSFYK-------PPLLAVGVIFILFLSISAFYFKKK 336
>gi|313672806|ref|YP_004050917.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939562|gb|ADR18754.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
DSM 19672]
Length = 345
Score = 63.6 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/354 (13%), Positives = 110/354 (31%), Gaps = 17/354 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y + + I + + D + N +P
Sbjct: 1 MNK-LSKYILEE-IYPIFIISNIFFIFILLFDKVVDLTDLVFSKNVPTIIIIETFIFYLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ + L+ +ELV+ +++G+S LL P + IL + L
Sbjct: 59 SFMMVTIPTSALLAVMTAHNRLSSDAELVVMKSLGLSPMSLLKPTIYFGILATLLAFLTS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDF 179
+ G K I +++ + + + + I D
Sbjct: 119 FYLLPYGNKYAIYNLKRTVEYVSLKDIKENEFYKEIPSIAIYVKKKVDDNKFLQITLIDE 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + + + + + +YG+I K +N+ ++ K
Sbjct: 179 KGGSLITAAEADAYQKFGAVVFDLKNGAIIQGKNDRYGKIEFKKFYFVVNVDSNLNREIK 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Y + +F + +P + M L+ ++ + F
Sbjct: 239 SERFMFMDELISRFN-----------DGYIYKFEFSKRVALPFSTLIMALLGLNMGVFFH 287
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R+N+ + + F I+ + ++ G + P A I + LS++
Sbjct: 288 RANRSINWI-IALGIIFSYNVIMFMSENLA--GKINPYFAPWIANTIFAFLSLI 338
>gi|16125010|ref|NP_419574.1| hypothetical protein CC_0757 [Caulobacter crescentus CB15]
gi|221233731|ref|YP_002516167.1| hypothetical protein CCNA_00794 [Caulobacter crescentus NA1000]
gi|13421992|gb|AAK22742.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962903|gb|ACL94259.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
Length = 397
Score = 63.6 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 12/349 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L RY + L L+ M+ + L + + + + A L P
Sbjct: 4 PNTLDRYLLRRTLAPMSAVLISTMVAFLMERLMRSFDLLSQTTE-GLRYLAELLVNLTPH 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + VV LN++SE+ A G S+ + PFV +LL + +V++
Sbjct: 63 YVGLTLPGGFFIGLFVVVNGLNKSSEIDAILASGTSLTRFTAPFVAMGVLLMVLSVILFG 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ ++ G + +
Sbjct: 123 FVQPYSRYAYHAVLHAAENAGWNGDVRPKALLSAGSDFFLTADRTDASGRYLQQVFIRRI 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG----- 236
+++ + + + L+ Q + ++ + D
Sbjct: 183 DPNGREDILTAVSAVVHKNPADSHIALELTNGRQISTVAGAQSYVVNFSRLMFDVPSGDA 242
Query: 237 --FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + + E+ ++ + + + L L+L + LIA
Sbjct: 243 GLLRLRGEDVSELTLIELARQGFGLEPAALPRETLLAALYARLARA-LILPLLPLIAVPF 301
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
L R+ + A G+ F ++ + + + + + A +P
Sbjct: 302 GLSAKRAGSGAAVAAGGVLL-FAFEILMVLGQ--ATAPRVTALVAIALP 347
>gi|325853208|ref|ZP_08171296.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|325484384|gb|EGC87307.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
Length = 703
Score = 63.2 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 82/282 (29%), Gaps = 5/282 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + + + ++ ++ + L + + S+
Sbjct: 60 MFRIRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGK-GLSMDVLGQFFWYM 118
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+ +
Sbjct: 119 SLMMVPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFY 178
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + S +K L+ K + + + +
Sbjct: 179 FQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMV 238
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + II L K + + ++ + + +
Sbjct: 239 YRMTDSYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQEMG--SSASVPYRRE 296
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
F+ + F + SN + +
Sbjct: 297 TFTHKHIVLDFDGDFNLTDMAGISNDARTKSITKIQHDKDSL 338
>gi|229495721|ref|ZP_04389449.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
gi|229317295|gb|EEN83200.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
Length = 658
Score = 62.8 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 9/107 (8%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ E+ + ++ ++ + + P+ + I + R +
Sbjct: 373 NMTELATFWDGAYQAEAYNFRSHSQERHRKFTFPVACIVFFFIGVPLGA-LIRKGGIGMP 431
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I + Y I T+ + +G + + + +
Sbjct: 432 MVASILLFVVYYMIDTLGFNLSYNGTWPTWLGMWFSTFILLPIGAFL 478
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/189 (10%), Positives = 61/189 (32%), Gaps = 1/189 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P ++ Y + ++ + + +V + L +++ L +
Sbjct: 6 PKRMYTYIIQQFMPLLVMTFVICWFVVLMQMLWSRADEIVGR-GLDTWVLIQLLFHAAVM 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ +++ F L EL+ ++ G+ ++++++P V I +G+ + +N
Sbjct: 65 ALPTATPLGILLASVMTFGGLGERLELLAMKSAGVPLYRIMSPLFVVGITIGLALFVYLN 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + + + H +
Sbjct: 125 TAMMDAQVKFFQIIFSAQQSRPDLEIPQGVFYNQIPGYSLFVKKKDHENRTLHELMIYDF 184
Query: 182 ITIDKKNKI 190
+ +I
Sbjct: 185 SRGSSQPRI 193
>gi|294508120|ref|YP_003572178.1| Conserved hypothetical protein containing permease domain
[Salinibacter ruber M8]
gi|294344448|emb|CBH25226.1| Conserved hypothetical protein containing permease domain
[Salinibacter ruber M8]
Length = 492
Score = 62.8 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+RS I+ + + + +FY I L + ++ A + L
Sbjct: 352 SPAVQRARSAQSAIQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLAL- 410
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R I A + + + + + + G P I +L + ++L
Sbjct: 411 RRGGLATIGAVALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLILY 468
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 1/157 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + +L M L+ + L ++ +S L A +
Sbjct: 20 MLRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGK-GIPVSVIVELIAYNLA 78
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P L+ ++ F L + + ++ GIS Q++ P +V + LL +
Sbjct: 79 YMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFN 138
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
N + L + + + +
Sbjct: 139 NVMLPEANHRARQLWSDIRGKRPGFELRPGIFYEDME 175
>gi|253572213|ref|ZP_04849617.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298387973|ref|ZP_06997521.1| permease [Bacteroides sp. 1_1_14]
gi|251838393|gb|EES66480.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298259239|gb|EFI02115.1| permease [Bacteroides sp. 1_1_14]
Length = 632
Score = 62.8 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/270 (13%), Positives = 79/270 (29%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLDMSVIAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 64 VPISLPLAILLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIP---DYNLKIAKKNRKTGMMYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + H AD + K + G + + S ++ ++F E
Sbjct: 181 NLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ F S SN
Sbjct: 241 KHTIIEFDSDFNMADASIMSNTSAAKDMSM 270
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/259 (9%), Positives = 65/259 (25%), Gaps = 2/259 (0%)
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEK-IGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
++ + L +++ + + + K + ++ +
Sbjct: 198 RMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADAS 257
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
AK + + + + K V +
Sbjct: 258 IMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANI 317
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +S P+ S + + I S++ S+ + + E +++ I
Sbjct: 318 TEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKI 377
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
I L + I A + R + V + + Y I + G +
Sbjct: 378 TISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM 436
Query: 339 AALIPVILTISLSILILLQ 357
+ L + +
Sbjct: 437 GVWTSSAVLAPLGAFLTYK 455
>gi|163788154|ref|ZP_02182600.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
ALC-1]
gi|159876474|gb|EDP70532.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
ALC-1]
Length = 637
Score = 62.8 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/234 (8%), Positives = 55/234 (23%), Gaps = 9/234 (3%)
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
++I + + + + + + +NH
Sbjct: 191 NRYQEIINKNRSKNKNLPHTNSYFDKYIINVDLEILNTGDLDEKNHTDRYSMLDVEQLNY 250
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEY--------QYGRIPIDKNSTTLNIPIKMDGFQKF 240
I KD L Y + +
Sbjct: 251 TIDSLKDKRRNDYKALSNTLYNRSNYSALNLNIDTLRTDSLYTGNILDLFSNNQKIQITN 310
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+S S +I+ + + + + V+ + + + A + R
Sbjct: 311 LAINSSNSTRQILDSNKKTFEKKSIILNKHIIVLHDKFVLAFACIILFFVGAPLGA-LIR 369
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I Y K+ + G P+ + + + + LS+ +
Sbjct: 370 KGGLGLPMVIAIVLFLTYYFFGIFAKNSAEKGSFSPILGSWLSTAIMLPLSVYL 423
Score = 52.8 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 76/235 (32%), Gaps = 5/235 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + + + ++ + ++ A +P +I ++P L+ +I+VF N
Sbjct: 1 MFIFVLQGVWLYIAELAGK-DLDVAVTAKFIMYYMPKLIPLVVPLTVLLSSIMVFGNFAE 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
E ++ GIS+ + + V + LGI N + GE +L +
Sbjct: 60 NYEFAAMKSTGISLQRAMRSLSVFIVALGIGCFFFANNVIPWGEYNFYNLRRNIAKKKPA 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ +I N + + ++ S T +I K+ +L +
Sbjct: 120 LAIAEGQFNEIGNINIKVEEKSGDNGQFLKNVIIHEKSKTRGGNYTVIASKNGELKSSPD 179
Query: 204 DKV---KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
+ +L YQ + L + + ++ +K
Sbjct: 180 SNILQLELTNGNRYQEIINKNRSKNKNLPHTNSYFDKYIINVDLEILNTGDLDEK 234
>gi|326797997|ref|YP_004315816.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
gi|326548761|gb|ADZ77146.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
Length = 505
Score = 62.8 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/267 (12%), Positives = 86/267 (32%), Gaps = 1/267 (0%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K + K + M ++ ++ L + + + + L I +P
Sbjct: 22 VLKAFFKPFIVTFFIVMFVLLMLFLFKYIDDLIGK-GFEWYVILELLWYASAAQISMAMP 80
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F NL + ELV +A GIS+ + + P ++ L+ I + + I
Sbjct: 81 LAMLLSSIMTFGNLGESYELVAIKAAGISLRKAMMPLIILVSLISIGSFFFSDYILPVTN 140
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ ++ + K + + I +
Sbjct: 141 LKMGSLLYDVRNKKADFLIKDGIFNNSIPGYSIRAKNKSKDGTVLYNLIIYQHGNISRGT 200
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
++ K+ + ++ + K+ + + + + +EQ S
Sbjct: 201 NVLLAKEGVMYNSRDNNYMILKLKDGVRYEETTAGDRSYNPRQQFTRYYFDQTEQKFDMS 260
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFY 275
+++ + KS+ + ++Y
Sbjct: 261 TFQMKRTDEDLFKSHSMMLNLKQLRYY 287
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
R +++ + + + + I A + R + V I + + I T
Sbjct: 375 DLSIVRYILEYHKKFTLAVSCLLLFSIGAPLGA-IIRKGGLGLPVVMAIIFFLIYHIIST 433
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K G + PV +I L I + +
Sbjct: 434 VAEKSAKEGNIDPVLGTWTAIIALTPLGIFLTYK 467
>gi|295134703|ref|YP_003585379.1| permease [Zunongwangia profunda SM-A87]
gi|294982718|gb|ADF53183.1| permease [Zunongwangia profunda SM-A87]
Length = 407
Score = 62.8 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 8/160 (5%)
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-------S 257
V P + + +D + Q
Sbjct: 217 MYSRTGVKSLDINFNPEESDKYKSFKHSILDNYNSNQSQRIVDDAIRTTNAAISHLSIKK 276
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
K + + E + V+ + + + + A + R + + I
Sbjct: 277 QEFKQSSRRLNKYEIALHEKYVLAVACIVLFFVGAPLGA-IIRKGGMGLPMVIAIIIFLS 335
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I K+ + G + P A + ++ + L I +
Sbjct: 336 YHFIGIFAKNSAEDGSISPFIATWLSTLIMLPLGIYFTYR 375
>gi|167004981|ref|ZP_02270739.1| hypothetical protein Cjejjejuni_01670 [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 351
Score = 62.8 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/348 (10%), Positives = 101/348 (29%), Gaps = 6/348 (1%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
F+ K Y++ + IDL + + N + L+ + VP ++P
Sbjct: 8 FRDLFKKFFYYIFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY----VLPI 63
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ +V ++ R +E V A+G+S ++ + ++ + +
Sbjct: 64 SLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTSFAYAND 123
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
++++ + + + + D +
Sbjct: 124 YKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSSFVSAKN 183
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
++ + N + K G D + K + +
Sbjct: 184 AHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASNSDYSIS 243
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ K+ + + Y + P + LI +R I+
Sbjct: 244 DALESF--ELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFNLAIVTF 301
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
M++ ++ ++ ++ ++ ++P+I+ LS + +
Sbjct: 302 VTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 349
>gi|299147702|ref|ZP_07040765.1| putative permease [Bacteroides sp. 3_1_23]
gi|298513885|gb|EFI37771.1| putative permease [Bacteroides sp. 3_1_23]
Length = 638
Score = 62.8 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 11 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 69
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 70 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 129
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + H AD + K + G + + + +L + F E
Sbjct: 187 NMKDGFENAHIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFRE 246
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 247 KHTIIEFNSDFNMVD 261
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 360 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 418
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + + +
Sbjct: 419 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFLTYK 461
>gi|315922632|ref|ZP_07918872.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696507|gb|EFS33342.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 632
Score = 62.8 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 64 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + H AD + K + G + + + +L + F E
Sbjct: 181 NMKDGFENAHIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 241 KHTIIEFNSDFNMVD 255
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 354 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 412
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + + +
Sbjct: 413 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFLTYK 455
>gi|254669826|emb|CBA04196.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 182
Score = 62.8 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 1 MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 60 RAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGE 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
+A + + ++ NG + W++ N
Sbjct: 120 WVAPTLSQKAENIKAAAI-NGKISTGNTGLWLKEKN 154
>gi|308451108|ref|XP_003088547.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
gi|308246904|gb|EFO90856.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
Length = 341
Score = 62.8 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/328 (11%), Positives = 110/328 (33%), Gaps = 11/328 (3%)
Query: 35 EIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
++ + G+ + S + R+P + I+P + ++VF L E+ +
Sbjct: 5 QLIKRFGQAAMGRVDPSILLSIIGFRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 64
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
GIS Q+ + +++ +++ ++ G + LI +
Sbjct: 65 GSGISRIQVARLLIPLTVIYLCVQSVLMIWMSPWGIRQYEQLISTQAVRTGFDLVRPREF 124
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
+ ++ I+ + K + +I K+A I N+ + +V
Sbjct: 125 ISSGAYTIYAGSLSEDRKNLKDIFFYQRAEKEGKPDVMILAKEATRIEIANETASVVDLV 184
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
E + I + + + ++ + ++ +SF ++ +
Sbjct: 185 EGRRYEIYP--GTPKYSQTEFQSYRLRLENNKEAKFESDEVEGLSFGKLLENRNDPVVAS 242
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + + +P ++ ++A ++ R + + + ++ ++ I K
Sbjct: 243 ELGWRLFVPFSIIVALMLATALCEVSPRQGRYLKLFPALLIFASLIVALMAIRTRISKDE 302
Query: 333 ILLPVAAALI--PVILTISLSILILLQK 358
V+L +++ + +K
Sbjct: 303 -----VGVWAYPAVLLFYAVAAALFSRK 325
>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
Length = 407
Score = 62.4 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 110/356 (30%), Gaps = 5/356 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY FK + +F ++ + I + + E L+ +P ++
Sbjct: 36 LDRYLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTE-NGQPAYIVFELSFLILPKVLI 94
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + ++++ L EL++ +IG S +L PF++ IL+ LV++ +
Sbjct: 95 TAISISGFIASVLIINRLYNEEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVHNLN 154
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I+ ++ K Q ++ N F + I +
Sbjct: 155 PYAHSKFIEAQERIKKEYVTQIIKPDQFISYQNKYTFFFGDKGNNGELSEILIEEQITPD 214
Query: 185 DKKNKIIHRKDADLAIIYN----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I N + + + ++ ++
Sbjct: 215 TTLTHIAKNGQVIANKDSNALLLRNGSTQSYNKVSGTFSLLQFDTLVFDLNQLRKDTISS 274
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+S + + KK+S + + L ++ L + L
Sbjct: 275 ESSLSSLNSTMLKKKISALESFDPRLGRAVSLYHDRNAKVLLAMLFPLLGMLGLLLGGFN 334
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
I + I L + KS+ L+ A L P++ T ++++I +
Sbjct: 335 RFGYLIRIISCILIMASLDLLRGASKSWVVENPLIWPAQYLSPLLCTFIIALIIWI 390
>gi|325268898|ref|ZP_08135523.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
gi|324988870|gb|EGC20828.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
Length = 640
Score = 62.4 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 3/226 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + + + ++ ++ + L + + S+
Sbjct: 1 MFRIRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGK-GLSVDVLGQFFWYM 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q +P L+ +++ + NL +SEL R+ GIS+ Q +V S+L+ +
Sbjct: 60 SLMMVPQALPLAILLSSLISYGNLGESSELTAIRSAGISLVQSFRGLIVISVLIACGSFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + S +K L+ K + + + +
Sbjct: 120 FQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + II L K + + ++ +
Sbjct: 180 YRMTDSYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQE 225
>gi|46446271|ref|YP_007636.1| hypothetical protein pc0637 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399912|emb|CAF23361.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 383
Score = 62.4 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 120/363 (33%), Gaps = 29/363 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M ILWRY ++LK + + ++ + L+EI N IS + A ++P
Sbjct: 1 MIPILWRYSINHFLKIVFACVFAFISILLTMRLDEIANFAA--LGAPISYILLFAFYQIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ +P L+ +++ L+ T EL RA G ++ LL P ++ + L IF ++
Sbjct: 59 YILPIALPLSCLIASLIFVQRLSNTHELTALRACGFALKDLLAPILLTAAFLTIFNFWIV 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-------------------ISNPQQD 161
+ +AT L + + + M+ +
Sbjct: 119 SEVATQTHLQTNILKSELRSINPLLLLNNKHLMRLKGLYFDSLGPSRVGEMATDAVFAIP 178
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
+ L + +SI + ++ + ++D + +
Sbjct: 179 SQHHQRINLFIAKQLKASSSIFTAQGATLLTTTSLNQENTFDDLLIENMKKSTTHVEDFS 238
Query: 222 DKNSTTLNIPIK-----MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ + EQ + ++ K K +++ ++
Sbjct: 239 QILQKKVWTVNNDYLKLPLLLIRAQEQKQALRQAKLENKKPVIVKDLKGQFHKSLSEIAK 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I +++ TL+ + + SR + + ++ I + F + T + G
Sbjct: 299 RSSIAFAVISFTLMGTAFGMNISRQRKHKNLLIVIILTTF---YLTTFFLAKGLDQQFYL 355
Query: 337 VAA 339
A
Sbjct: 356 SFA 358
>gi|325124204|gb|ADY83727.1| hypothetical protein BDGL_003141 [Acinetobacter calcoaceticus
PHEA-2]
Length = 350
Score = 62.4 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 41/340 (12%), Positives = 114/340 (33%), Gaps = 6/340 (1%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
+ +++ L + + S + R+P + I+P + ++V
Sbjct: 1 MVISLLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLV 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
F L E+ + G+S QL + +++ +F +++ + G + L
Sbjct: 60 FGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMTPWGLREFEKLTTTQ 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
++ ++ I+ + DK + +I K+A
Sbjct: 120 AVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEDKPDVMILAKEATR 179
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+ ND + +V+ + I + T + + ++ +S
Sbjct: 180 VEVANDTANVVDLVQGRRYEIFPGQPKYT--QAEFQSYRLRLENDKDVKFESGDVEALST 237
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ + ++ ++ + + P +V +++ ++S R + ++ IF L
Sbjct: 238 TKLFSKTNDPVIRSELGWRLFGPFTIVIALMLSVALSEVSPRQGRYYRLIP-AIFIFSSL 296
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ +K+ L A V++ ++ + +K
Sbjct: 297 IVLMIAIKTRISKEELDIW--AYPAVLVVYGVAAALFSRK 334
>gi|153827723|ref|ZP_01980390.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
gi|149737800|gb|EDM52705.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
Length = 199
Score = 62.4 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 56/173 (32%), Gaps = 1/173 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
A + L++Q+ + + + +FI + +++
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVF 173
>gi|237752465|ref|ZP_04582945.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
gi|229375954|gb|EEO26045.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
Length = 357
Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/359 (12%), Positives = 100/359 (27%), Gaps = 7/359 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ +RY YLK Y + IDL + + + N +L A
Sbjct: 1 MKLFFRYVSFLYLKYFFYLFVSLECFFVAIDLVKFLDDLPSSANL----FILLLAYDFMY 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q I+P ++ IV+ NL ++S+ A+G + ++ P + S + + + +
Sbjct: 57 ASQFILPLSLILAQIVLLINLLKSSQFTAFLALGFAKIKIFYPIFLLSFCITLLFIALNA 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
++ +I Q K + A+ ++
Sbjct: 117 TPFAYAKERVDLIIDQGFVGNYKSDLFVKYNQNYIYFKKIYPLLQRAEGVIVYEINPTQN 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ I + + + + + + K
Sbjct: 177 SLTRIVESKMAQFNGQDWILENVTITTLDDNLELGKNPLKIQKETTYKTLHDFKPKILDN 236
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ S S + + + N + L + M +A +
Sbjct: 237 IYEKQGSISILDAFEAFMLLKEQNANTQKVRGALYNLLFFPLFAPLIMICLAV-FIPNSN 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R ++ I + + I SG L P + ++P+ S +
Sbjct: 296 RYANFSLMTLAMILGVLITWGIFFSFSKLSISGFLQPEFSVIMPIFTLFLASSFCFYKI 354
>gi|83816098|ref|YP_446193.1| hypothetical protein SRU_2087 [Salinibacter ruber DSM 13855]
gi|83757492|gb|ABC45605.1| membrane protein, putative [Salinibacter ruber DSM 13855]
Length = 473
Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+RS I+ + + + +FY I L + ++ A + L
Sbjct: 333 SPAVQRARSAQSAIQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLAL- 391
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R I A + + + + + + G P I +L + ++L
Sbjct: 392 RRGGLATIGAVALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLILY 449
Score = 53.2 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 1/157 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + +L M L+ + L ++ +S L A +
Sbjct: 1 MLRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGK-GIPVSVIVELIAYNLA 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P L+ ++ F L + + ++ GIS Q++ P +V + LL +
Sbjct: 60 YMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
N + L + + + +
Sbjct: 120 NVMLPEANHRARQLWSDIRGKRPGFELRPGIFYEDME 156
>gi|237745416|ref|ZP_04575896.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229376767|gb|EEO26858.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 347
Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/327 (11%), Positives = 107/327 (32%), Gaps = 10/327 (3%)
Query: 31 IDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVI 90
+ L I Q + + L + I+ V ++V + SE+V+
Sbjct: 1 MMLIRILGQAAK-GRVASDDVMALIGFTSLNYMPIILILTGFVSVLLVVTRSYQDSEMVV 59
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
A G+S+ + L P + ++ + + L+ + + ++++ D +
Sbjct: 60 WFASGLSLTRWLRPVMEFALPIVVLVTLLGFFATPWAYRQSAEYRERFEKREDIARISPG 119
Query: 151 PWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLK 209
+ + + Q+ F + L + +S + + V L+
Sbjct: 120 KFQESAAAQRVFFVEKMSEDLSKVKNVFINSSRNGKITTVVSQNGTLETNEKGEKFVVLE 179
Query: 210 KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
+ Y D + + + + +I + + + +
Sbjct: 180 DGIRYDETPDQSDFRIMEF------EKYTAYIAPKGEVTISDISTRSMTTLELVTDTTSK 233
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + I +P M + L+A + R+ + + + + + ++++
Sbjct: 234 KLGELVWRIGLPFMATLLMLLAIPLGFVNPRAGR-SFNLIIAVLLYMTYSNLSSFIQAYV 292
Query: 330 KSGILLPVAAALIPVILTISLSILILL 356
L A P+ L+++L I++L
Sbjct: 293 AQQKLAFGLA-WWPLHLSVALVIVLLF 318
>gi|30468062|ref|NP_848949.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
10D]
gi|30409162|dbj|BAC76111.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
10D]
Length = 329
Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 102/348 (29%), Gaps = 31/348 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I +Y + + LY L + L L ++ Q+ + S+ + ++ L
Sbjct: 3 IFEQYIWSHLWTPFLYALSACLALTFSAGALVDVMRQITQ--GLSLDMACQILCLQLVLS 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P + I + NL +L+ R GI + + L P ++ ++G
Sbjct: 61 IHLGLPASCVFGGIFAYANL----DLMALRTSGIGVARWLKPSLIFGCMVGWLAWQWNEW 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
L Q ++ + ++ ++ + + +
Sbjct: 117 ALPLANYSLHKLQDQIQNQITSKALVNQINHKLIYVKEWKPLHMNHCVMWDSEMNQLWM- 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
A + K+VV YQ+ + + + + +
Sbjct: 176 -------------AKQIDWDGARWIAKQVVHYQWDDQFQLQLQSHVAKMEWPTAWISQQQ 222
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ +K + N R Y P+ + LI +S++ +
Sbjct: 223 WQPMWMNVQTLKCYKQVAEFNKHIAIRY----YQKYAFPISCGLLHLIGSSLASVSKK-- 276
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ F Y ++ +S + + A +PV +
Sbjct: 277 ----GFILSLIVLFGYYLFGFGCEALAESSQMSALMAGWMPVAGLFFV 320
>gi|307824320|ref|ZP_07654546.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
gi|307734700|gb|EFO05551.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
Length = 383
Score = 62.4 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/341 (10%), Positives = 92/341 (26%), Gaps = 11/341 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L + L+T L ++++ I ++ E S + + +
Sbjct: 24 VLDKMVALDLLRTLLAVWSVIVVIIVSRQFIRILDRAVE-GQVSNQTLMTVLGLKTIIAS 82
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + ++V + R E+ + G + + L + + + +
Sbjct: 83 AAFLPAALFMAVLMVLGRMYRDQEMSAVASAGGGAGTVYRSIFLLVFPLSVLSAGLSFYV 142
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ E + +L+ Q K++ D + + + S + +D ++
Sbjct: 143 SPWAEAMMEELMHQDKESADLRGIAAGKFSEYSQGDLVFY---------VEKIDDDKTMH 193
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ A + L + + +
Sbjct: 194 EVFVQHRQGDRLAIINAEVGRLRDLPDGRYIVLENGERIQGQPGTVNYVLEQFTEYAVRM 253
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S K+ S + IP+ +V ++ IA ++ R
Sbjct: 254 ETKESAANFGKESVASGTLASSGQINDIAELQRRFSIPMGIVLLSFIAVPLAQMSPR-GG 312
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ G F I + +S+ + +
Sbjct: 313 VYGNMLVGFLIYFSYGNFIRVSQSWVMNQTIPAWLGVFGVN 353
>gi|149280024|ref|ZP_01886149.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
gi|149229221|gb|EDM34615.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
Length = 472
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/267 (11%), Positives = 76/267 (28%), Gaps = 5/267 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I K +++ M ++ + L + + + + L
Sbjct: 1 MKKI-HVLLLKAFIRPFFVTFFIVMFILLMFFLFKYVDDLIGK-GFEWYVILELMYYASA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ +I+ F L ELV ++ GIS+ + + P +V + I +
Sbjct: 59 ANVSMALPLSILLSSIMTFGTLGENYELVAIKSAGISLQKAMMPLLVLITCISISSFFFS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L+ ++ + ++ + I K + +
Sbjct: 119 DYMLPKANLKFGSLLWDIRNKKLSFLIKEGVF---NSSIPNYSIRVDKKGADGVTLHNVM 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
N I A + +D L ++ + + N ++ +
Sbjct: 176 IYDHTSNNGIAKIIIAKEGKMASDDKYLLLKLKDGVRYEESSGKNASYNPRQELTRMRFK 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHN 267
+K+ N
Sbjct: 236 ETDQKFDISSFNMKRTDEQGFRNNTQM 262
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ + + ++ + + + I A + R + V + + + I T+
Sbjct: 356 KNIIKVQIEYQKKFTLAFSCLLLFFIGAPLGA-IIRKGGLGLPVVMAVVFFLIYHVISTV 414
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +G LLP + +I+ L + +
Sbjct: 415 AEKSALTGTLLPFFGPWLAIIVLSPLGAFLTYK 447
>gi|157826432|ref|YP_001495496.1| putative permeases [Rickettsia bellii OSU 85-389]
gi|157801736|gb|ABV78459.1| Putative permeases [Rickettsia bellii OSU 85-389]
Length = 360
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 116/355 (32%), Gaps = 5/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + LV++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIVITFSMTSLVWITQVLKLLYLFDK--GIKVMDFLSLIILVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +L+I + G+ QL P + ++++ + + + +
Sbjct: 64 LPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISSTVMPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ K+N + + +I+ + T +
Sbjct: 124 SHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRNTDNP 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ K + + +S + + + +
Sbjct: 184 SVVFANSGILNIYENDPIFELSKGSRQEYDINGNITQLTFDSLMIKLQNDNPLISQRTTH 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ Y I + + N + + + I+ PL + +A +V L++ S +
Sbjct: 244 NKEANEYYIEELLEPPVDLNPMKKIKLIAEAHQRIIWPLYNFVLPFLALAVFLKYPYSKK 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ ++ T S L + A + + +S+ + + ++K
Sbjct: 304 TTFMPILFAALSVLIATSAHFTLQNFASKNLAFITACYLNIFFILSIGLYLFIRK 358
>gi|315185937|gb|EFU19701.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6578]
Length = 424
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/413 (12%), Positives = 119/413 (28%), Gaps = 62/413 (15%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY + + + L ++ + + Q+ + +L +P I+
Sbjct: 8 TLYRYVGEEIALSFVISFLFFFVIFLINQFLLLAEQILSKR-APLFDVILLIIYALPSIV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+PF +L ++ L+ +E + +A GIS+ P VV +LL + + +
Sbjct: 67 AISVPFASLAAALMSITRLSSDNEFLAFQAGGISLLHAFLPMVVFGLLLSSVSFVANDYF 126
Query: 124 AT----SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ K+ ++ + + + I P + +L E
Sbjct: 127 LPLGTLNFAKLYRQILYTTPEIELESYAIKEYQNTILIPGKVNQSHIDDLLIIEETEEGT 186
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + + + R + + V L V + + T I +K
Sbjct: 187 RILQAREGDIVPGRNEKTALALELHDVFLSLVK-REGDYEYSSAETLTYTILVKDINIAL 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++ + M + E + L L TL ++ S+
Sbjct: 246 RNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSSLYLTTLSLSNESIRSR 305
Query: 300 RSNQPR-----------------------------------------IIVAYGI------ 312
R + +A G+
Sbjct: 306 FLGNLRSSLQRLREKERIRIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGLFNLKGG 365
Query: 313 ---------FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F + + ++ + G P A +P I+ +++ + L
Sbjct: 366 RAAGFGIGIFLSIVYWGMLVAGQMLGLRTSFSPSLAMWVPNIIISLVALTLFL 418
>gi|126736391|ref|ZP_01752133.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
gi|126714212|gb|EBA11081.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
Length = 369
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/354 (10%), Positives = 103/354 (29%), Gaps = 7/354 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +F L +++ ++ + +Q+ S A +P +++ +P
Sbjct: 1 MLSQLMVLFGFFSLVLILIYWINRAVVLFDQLI-ADGQSAGVFLEFTALSLPSVMRLALP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V ++ SEL + +A G S ++L P + I++ + +++ +
Sbjct: 60 LAAFAAAVYVTNRMSTESELTVVQATGYSPFRLARPVLYFGIIVALMMSALMHFLVPMSA 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
D + N + +++ N I+ T ++
Sbjct: 120 ARLADRQAEIAQNITARLLTEGQFLEPINGVTFYIRDITPAGELQDIFLSDTRSDAEQVT 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ V L +V+ + NI + + +
Sbjct: 180 YTATKAFLVRDNDTIQLVMLDGMVQTLRTENQRLFTTTFDDFAYNISDLIRQPRNRGRRD 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFSRSNQ 303
A +E++ R + + ++ + L+ S + +
Sbjct: 240 AYLFTWELLNPTPALEAETGRDAARLISLGHDRFSQSILGIVAALLGFSALMVGGYSRFG 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ IF ++ + T +S A + + + +L
Sbjct: 300 VWKQIIGAIFLIIVVKAVETTGLRIARSDP-QLWMVAYLQSAVGFVMIWFLLFW 352
>gi|260891451|ref|ZP_05902714.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
F0254]
gi|260858834|gb|EEX73334.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
F0254]
Length = 222
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 9/217 (4%)
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
+ ++N ++ ++ E ++F I N A+ A ++LKKV
Sbjct: 6 VFLTNEEKGFGFYIDEVNNEKATAKNFLIINKRGNNPYPIVFLAENAKFDPGIIRLKKVK 65
Query: 213 EYQYGRIPIDKNSTTLNIPIKM------DGFQKFSEQFASRSFYEIIKKMSFS--NKSNI 264
Y + + + S + ++ + + E+ + + N
Sbjct: 66 GYAFDKDGNSQVSALYQEQEIPITTFFRENKKEVKKSRKEMNIKELNEFYKQNIKNPEEK 125
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+A+ + Y ++ P + + +S+ RS + I + F + +
Sbjct: 126 ETALKAQVEIYQRLIGPFASTFLCWLGVLLSVGHRRSGR-GISFGISLIVIFGYIGMASY 184
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
K + A +P + + I ++K G
Sbjct: 185 AKIMVLKNNVPANIAMWVPNFVLFIMCIYFSIKKYKG 221
>gi|288802960|ref|ZP_06408396.1| putative permease [Prevotella melaninogenica D18]
gi|288334477|gb|EFC72916.1| putative permease [Prevotella melaninogenica D18]
Length = 640
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 3/278 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ ++ + L + + S+ ++
Sbjct: 5 KKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGK-GLSMDVLGQFFWYMSLMM 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ + NL +SEL +A GIS+ Q +V SI + + N
Sbjct: 64 VPQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K L+ K + + + + +
Sbjct: 124 VGPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMT 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II L + K + + ++ + N + F+
Sbjct: 184 DSYEDQAIILADSGMLQSTADKKHLVLNLWSGEWFENMRSQEMG--NSASVPYRRETFAH 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ F + SN + + +
Sbjct: 242 KHIVLDFDGDFNLTDMAGISNDARTKSIQKIQHDKDSL 279
>gi|302345159|ref|YP_003813512.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
gi|302149884|gb|ADK96146.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
Length = 640
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 3/278 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ ++ + L + + S+ ++
Sbjct: 5 KKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGK-GLSMDVLGQFFWYMSLMM 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ + NL +SEL +A GIS+ Q +V SI + + N
Sbjct: 64 VPQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K L+ K + + + + +
Sbjct: 124 VGPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMT 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II L + K + + ++ + N + F+
Sbjct: 184 DSYEDQAIILADSGMLQSTADKKHLVLNLWSGEWFENMRSQEMG--NSASVPYRRETFAH 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ F + SN + + +
Sbjct: 242 KHIVLDFDGDFNLTDMAGISNDARTKSIQKIQHDKDSL 279
>gi|284036898|ref|YP_003386828.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
gi|283816191|gb|ADB38029.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
Length = 501
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 2/155 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + + L + + + L ++ + ++ L
Sbjct: 1 MKKI-DKLVLGSFWGPFFLTLGVVIFIFLMRLLMFYIDEFVSK-DLDLATFGRLLFYFAL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L I +P L+ +++ F NL EL ++ GIS+ + + P ++ +I + F+
Sbjct: 59 LTIPTALPLAVLLSSLMTFGNLGEFFELTALKSAGISLTRAMRPLLIVAIGISAFSFWFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
N +A G L+ K +
Sbjct: 119 NSVAPWANLKGYSLLYDIKTAKATLNLKEGIFYND 153
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 1/158 (0%)
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFS 259
Y + V Q + L +++
Sbjct: 308 RQYYNYQFKSDAVLKQKVLKDGKWADSLLTAQKIPQHELAQIALNQAQNILSYSTSNVTY 367
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ +R + + + + + M LI AS+ + + V I LY
Sbjct: 368 LTEKEKNVWRYQLETHHKFTQAISVFVMFLIGASMGAIIKK-GGFGLPVLIAIVFFIFLY 426
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K G+L A + I+ +L++ +
Sbjct: 427 VLTIAGDKYAKDGLLWVPIGAWLANIVLFPFGLLLMQR 464
>gi|154491977|ref|ZP_02031603.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
43184]
gi|154088218|gb|EDN87263.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
43184]
Length = 655
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/273 (12%), Positives = 76/273 (27%), Gaps = 3/273 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L+ + + +L L + +V + L + M I A +
Sbjct: 1 MLKIKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYA 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P ++ ++ I
Sbjct: 60 ALFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISIISIGAFF 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + L+ + + +
Sbjct: 120 FQNYAMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K ++ L + + + + R + ST +
Sbjct: 180 YDYSEGFNKVSVMVADSGRLKTSADKMFLVLSLFNGESFRSLDKQPSTAGTKSSVPYQRE 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
F + F + S N F
Sbjct: 240 TFKSRDILIEFDANFSRTDESFMQNQFMGKNMH 272
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I I
Sbjct: 387 YRVRRHLTEWHKKFTLSFACMVFFFIGAPLGA-IIRKGGLGMPVVISVILFIFYYIIDNI 445
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + + L I + +
Sbjct: 446 GFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478
>gi|91206136|ref|YP_538491.1| putative permeases [Rickettsia bellii RML369-C]
gi|91069680|gb|ABE05402.1| Putative permeases [Rickettsia bellii RML369-C]
Length = 360
Score = 62.0 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 124/358 (34%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + LV++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIVITFSMTSLVWITQVLKLLYLFDK--GIKVMDFLSLIILVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +L+I + G+ QL P + ++++ + + + +
Sbjct: 64 LPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISSTVMPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+N + + + + ++ K ++ ++ D
Sbjct: 124 SHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRNTDNP 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
S+ + ++ + + + + + +S + + +
Sbjct: 184 SVVFANSGILNIHENDPIFELSKGSRQEYDI---NGNITQLTFDSLMIKLQNDNPLISQR 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + Y I + + N + + + I+ PL + +A +V L++
Sbjct: 241 TTHNKEANEYYIEELLEPPVDLNPMKKIKLIAEAHQRIIWPLYNFVLPFLALAVFLKYPY 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + + ++ T S L + A + + +S+ + + ++K
Sbjct: 301 SKKTTFMPILFAALSVLIATSAHFTLQNFASKNLAFITACYLNIFFILSIGLYLFIRK 358
>gi|332290859|ref|YP_004429468.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332168945|gb|AEE18200.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 528
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/248 (10%), Positives = 71/248 (28%), Gaps = 2/248 (0%)
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ N +K + ++ + + + +
Sbjct: 182 PTLSLKLTDGNYYTEVQKKDYKERKKEPFAKSYFETYTLNIDLSELDAVDLDDKDINNSY 241
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
+I +SIT K + R I+ + + I+ T L+
Sbjct: 242 QMMNIVLLDSSITELSKRYVEDRTTFSDKYIHKANLTSLDSLYSGVPAQDIEIKDTLLDN 301
Query: 231 PIKMDGFQKFSEQFASRS-FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
D + ++ + ++ K ++ + E + V+ + +
Sbjct: 302 YEVRDRVRILEIAKSNLNNTVADLENRKNKLKVDVKRLSKFEISLHEKYVLGFSCILLFF 361
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ A + R + + G+ + I K+ ++ + P A+ + + +
Sbjct: 362 VGAPLGA-IIRKGGLGLPIVIGVVVFLTFHFIGIFAKNSAENNSISPFVASWLSTFILLP 420
Query: 350 LSILILLQ 357
L I + +
Sbjct: 421 LGIYLTYR 428
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/247 (10%), Positives = 67/247 (27%), Gaps = 3/247 (1%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + + + ++ + +P ++ ++P L+ +I+ F N
Sbjct: 1 MFIFVLQSVWLYIQELAGR-DLDFDVIIKFLLFAMPSLVTLVLPLSVLLTSIMTFGNFAE 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
E ++ GIS+ + + + I L I + L N I + + +L +
Sbjct: 60 NYEFAAMKSTGISLQRAMKSVIYFVIFLAIGSFLFANHIIPASQIEFRNLRRNIGKLKPA 119
Query: 145 QKSDIIPW--MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ + + + I +I + +L
Sbjct: 120 MLIRSGQFNEITEDFNMRVAKKYGDRDQYLRDIVIHQAEKGRMGNYTVIIASEGELISSI 179
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ K+ + Y K+ + + S + + +
Sbjct: 180 DSPTLSLKLTDGNYYTEVQKKDYKERKKEPFAKSYFETYTLNIDLSELDAVDLDDKDINN 239
Query: 263 NIFHNYR 269
+
Sbjct: 240 SYQMMNI 246
>gi|313886927|ref|ZP_07820630.1| putative phage tail component, N-terminal domain protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332300780|ref|YP_004442701.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
gi|312923624|gb|EFR34430.1| putative phage tail component, N-terminal domain protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177843|gb|AEE13533.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 678
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 43/174 (24%), Gaps = 1/174 (0%)
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K++++ HR A + +L P +S +
Sbjct: 331 WLKQDQLSHRPFATVTARRLSHDELLGAESSHASPPPYTLDSLMDRATDQDKLLGYKQAL 390
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++ + + P+ + + A + R
Sbjct: 391 EWLESLSSSVQIADTYYDDAASDYRVNAQEMHRKFTFPVACLLFFFVGAPLGA-IVRKGG 449
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + Y I T SG + A + + + L + +
Sbjct: 450 VGTPMVLAVLIFIIYYVIDTFGLKMINSGQIPVWAGMWLSSAVILPLGAFLTYK 503
Score = 42.8 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 57/153 (37%), Gaps = 1/153 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I++ + + +L L LL +V + L + + + + +
Sbjct: 5 PKIMYIFMVRSFLPLLLMTLLICWFVVLMQFLWQHVDDLVGK-GMDVGVLLEVIFYAGLY 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F NL EL+ ++ G+ + +++ P V+ + + + ++
Sbjct: 64 VLPTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLD 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
++ + + + +
Sbjct: 124 RGVQKASVRVYQILFSARYARPELEIPKGIFFN 156
>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 359
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/353 (12%), Positives = 119/353 (33%), Gaps = 23/353 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + + ++ + + I + S + A +P
Sbjct: 1 MKVLHRYIAFEITRVAALSSALFLFVILMDRASTIAETVLGK-GVSFLDFLSVLAKGLPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IP ++ ++VF +N +EL +++ GIS+ +L P + ++ + + +
Sbjct: 60 FLGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLLSFYSLM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A +++ + S+ + +K+ PE + +F +
Sbjct: 120 FLAPKSNVAMKRELEELLRKKITLSITEKRF---SSNFPGVTFYVEKLYPEKGLLVNFMA 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLK------KVVEYQYGRIPIDKNSTTLNIPIKMD 235
K+ + D V L +VV+++ + + + +
Sbjct: 177 SLQKKEKLVTAFGRRGFLRTKGDTVFLDIEDGSAQVVDWKKPKEFKFIKFKSYTVELYKF 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + ++ ++++K+ A + + + +I S++
Sbjct: 237 TRKERFKAAKYKTLFQLLKERDK----------EARVAVVKRTALAFASLIVGIIGFSIA 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ R + V + + Y + T K + AL+P ++
Sbjct: 287 VSIPR-GSIGVGVLISLLLIVLYYILYTFSKKVALKTGQPLL--ALLPDVVFG 336
>gi|268315816|ref|YP_003289535.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
gi|262333350|gb|ACY47147.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
Length = 481
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 1/164 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L R L + M L+ + L + + + L + +
Sbjct: 1 MKRLHRMTLGMLPGPFLGWFGTLMFLLIMQFLIKYLPDLVGK-GLPLGVILELISYNLAY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P TL+ I+ F L ++ + ++ GIS+ QL P ++ ++L + N
Sbjct: 60 MVVLAVPMATLIAMIMTFGRLAESNAYQVIKSAGISLPQLTWPLLIVGLVLTGAMMYFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
I +L + + + +
Sbjct: 120 LILPEANHRARNLWIDIQRKKPGFQLQPGVFYDGIEGYSILVQH 163
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 1/114 (0%)
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+R I+ + S + R + + I + + LI + L R
Sbjct: 337 QQTRRLQTEIEDLQRSIQWTERRADRYRVEIHKKFSIAVACLIFVLIGMPLGLSVRRGGL 396
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F + + + G L P +P ++ L + + +
Sbjct: 397 GLAGGLALAIFLF-YWITLVQGEKLADRGYLTPWIGMWLPNLVMGLLGVALFVY 449
>gi|319779266|ref|YP_004130179.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
gi|317109290|gb|ADU92036.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
Length = 372
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/342 (9%), Positives = 101/342 (29%), Gaps = 3/342 (0%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
+ +++V++ L ++A + I+ + I
Sbjct: 17 GVVFSTLLIVWLSVLLARLLAQAASGIIGPDLVLGISAFSSITALPIILIVSLFISIITT 76
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
R E+ + G+S+ + P + +I + + ++ + + Q++
Sbjct: 77 VSRNYREQEMYVWFTTGVSLVDWIKPVLRIAIPVSVVIAILTIVTSPWAYLQIEEYRQRY 136
Query: 139 KDNGDKQKSDIIPWMQIS--NPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
D K +++ I I+ + +
Sbjct: 137 AQRSDFSKIVQGQFLETDAGARVFFIEPSENNNHEFGKIFAREVTEEWISILNADYGDFK 196
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
++L Y + ++ + + + R+ K
Sbjct: 197 TNFETGERYIELGSGTRYDIRIGTPEFRASKFSSVTMNINQKNSYTEEQIRTRALEKIKA 256
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+ +N R+++Q + + +PL + + L+ + R + + G
Sbjct: 257 RPFTQLIKDNNSRSDSQILWRLSLPLAALNLALLGIPLGSVNPRMGKSAD-IFMAALVGM 315
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ ++ +M+ + + + ++ L +L++ + K
Sbjct: 316 LYMNLLNVMRGWVAAEQIGLWTGFVLVNGLFSALAVFLFWYK 357
>gi|224534155|ref|ZP_03674735.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
gi|224514580|gb|EEF84894.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
Length = 355
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 114/353 (32%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N S + +P
Sbjct: 3 IDKLFVKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK-NISFKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+S+ ++L P ++ S+ + + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISVFISVILFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ N II K + + + + I
Sbjct: 122 IDTVAKRDLLIKNSVGNSGSSDKTIII-----RDLAREIYNIKSYDIDENTFSNLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D + A ++K KL V E+ I +N+ + + + +
Sbjct: 177 DSKDEFQTRYDINKAKWKDNKWKLYGVREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ + L+ + L++ +V +
Sbjct: 237 VMLSSKALSFTKLVNWISFLKSERLNYSDALFDLLNRVFFSFRLMLLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ I + ++ +
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFSFLADLGYLNIYMASSFTTIFFLIINFFV 349
>gi|294807984|ref|ZP_06766761.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|294444797|gb|EFG13487.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
Length = 638
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 77/255 (30%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 11 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 69
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 70 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 129
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + AD + K + G + + + ++ ++F E
Sbjct: 187 SMKDGFEKARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFRE 246
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 247 KHTIIEFNSDFNMVD 261
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 360 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 418
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 419 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 461
>gi|160885006|ref|ZP_02066009.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
gi|156109356|gb|EDO11101.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
Length = 632
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 78/255 (30%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 64 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + AD + K + G + + + ++ ++F E
Sbjct: 181 SMKDGFEKARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFRE 240
Query: 243 QFASRSFYEIIKKMS 257
+ + F +
Sbjct: 241 KHSIIEFNSDFNMVD 255
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 354 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 412
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + + +
Sbjct: 413 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFLTYK 455
>gi|237712765|ref|ZP_04543246.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262409745|ref|ZP_06086283.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229447177|gb|EEO52968.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262352398|gb|EEZ01500.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|295084616|emb|CBK66139.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
Length = 632
Score = 61.6 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 77/255 (30%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 64 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + AD + K + G + + + ++ ++F E
Sbjct: 181 SMKDGFEKARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFRE 240
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 241 KHTIIEFNSDFNMVD 255
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 354 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 412
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 413 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 455
>gi|262382624|ref|ZP_06075761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295502|gb|EEY83433.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 658
Score = 61.3 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 78/265 (29%), Gaps = 2/265 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L + +V + L + M I A + +
Sbjct: 5 KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYAALFL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N
Sbjct: 64 VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L+ + + + + +
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183
Query: 183 TIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++I L + + L + + + +TT + FS
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFS 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ F + S N +
Sbjct: 244 SKDILIEFDANFNRTDESFMQNQYM 268
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I +
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNM 439
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + ++ + I + +
Sbjct: 440 GFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472
>gi|301308106|ref|ZP_07214060.1| putative permease [Bacteroides sp. 20_3]
gi|300833576|gb|EFK64192.1| putative permease [Bacteroides sp. 20_3]
Length = 651
Score = 61.3 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 78/265 (29%), Gaps = 2/265 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L + +V + L + M I A + +
Sbjct: 5 KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYAALFL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N
Sbjct: 64 VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L+ + + + + +
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183
Query: 183 TIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++I L + + L + + + +TT + FS
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFS 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ F + S N +
Sbjct: 244 SKDILIEFDANFNRTDESFMQNQYM 268
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I +
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNM 439
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + ++ + I + +
Sbjct: 440 GFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472
>gi|297537470|ref|YP_003673239.1| permease [Methylotenera sp. 301]
gi|297256817|gb|ADI28662.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
Length = 372
Score = 61.3 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/353 (9%), Positives = 107/353 (30%), Gaps = 10/353 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + T L + +V Q+ + + + +
Sbjct: 5 RSLLHELIATASGTFLILIGIVIAQR-AGYLVQLAAKGVLPNDAITTILGFNIIRFMPLL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + ++ R SE+VI + G+SI + P +V + + + + +
Sbjct: 64 LSLSLFLAILLTLSRWYRDSEMVIWFSAGLSITSWIRPILVFATPIVVIIAFLSLFVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSITID 185
D Q + D + + ++ + ++ +
Sbjct: 124 ATNKVEDFRVQLESRDDLAAISPGVFKESAHADRVFFIESFDELGNIVKNIFVQSIQHQK 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + + ++ + ++ Y+ R + ++T + +
Sbjct: 184 LGIIVAAQGSRLVEKNGDNFLLMEHGHRYEGARGTSEYSTTEFEKYAIRVEASEAKREPP 243
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S + + +NI + + +P+ + + L+A +S R+ +
Sbjct: 244 STQSISSRDLIMNKSNNNIAEL-------QWRLAMPVSALILALLAIPLSALDPRAGRSA 296
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
A I + ++ I++++ G + + ++ +L + ++
Sbjct: 297 -NFALAIVIYIIYNNLLNIIQAWIAQGKVSGIIGLWPIHLVFGTLVFYMFYRR 348
>gi|293369978|ref|ZP_06616545.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|292634896|gb|EFF53418.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
Length = 638
Score = 61.3 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 77/255 (30%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 11 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 69
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 70 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNV 129
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + AD + K + G + + + ++ ++F E
Sbjct: 187 SMKDGFEKARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFRE 246
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 247 KHTIIEFNSDFNMVD 261
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 360 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 418
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 419 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 461
>gi|298483137|ref|ZP_07001317.1| permease [Bacteroides sp. D22]
gi|298270654|gb|EFI12235.1| permease [Bacteroides sp. D22]
Length = 632
Score = 61.3 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 77/255 (30%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P L + N
Sbjct: 64 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + AD + K + G + + + ++ ++F E
Sbjct: 181 SMKDGFEKARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFRE 240
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 241 KHTIIEFNSDFNMVD 255
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 354 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 412
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 413 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 455
>gi|28198043|ref|NP_778357.1| hypothetical protein PD0107 [Xylella fastidiosa Temecula1]
gi|182680670|ref|YP_001828830.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|28056103|gb|AAO28006.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182630780|gb|ACB91556.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|307579131|gb|ADN63100.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 361
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/341 (12%), Positives = 108/341 (31%), Gaps = 16/341 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ + L+ M++ L +I + + ++ R
Sbjct: 1 MPK-LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R SE+ + +IG+ ++L + + + + +
Sbjct: 59 SYLPLLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + DL++Q + + + + + + + +
Sbjct: 119 LWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQS 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + ++L+ N L +
Sbjct: 179 QKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPEL 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S + A+ Q + + PL+ +A L+ +S R
Sbjct: 239 SVVYDSNHPDILPTF-----NLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPR 293
Query: 301 SNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPV 337
+ + F++Y ++ + + +G + PV
Sbjct: 294 QQRYG-----AVMMCFLVYMVGTNLMIVGTQWIANGKISPV 329
>gi|255533443|ref|YP_003093815.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
gi|255346427|gb|ACU05753.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
Length = 480
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 75/267 (28%), Gaps = 5/267 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I K +++ M ++ ++ L + + + + L
Sbjct: 1 MKKI-HLLLVKAFIRPFFVTFFIVMFILLMLFLFKYVDDLIGK-GFEWYVILELMYYASA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ +I+ F L ELV ++ G+S+ + + P +V I L I + L
Sbjct: 59 ANVSMALPLSILLSSIMTFGTLGENYELVAIKSAGVSLQKAMMPLLVLIIFLAISSFLFS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L+ ++ + +N I K + +
Sbjct: 119 EYMLPKANLKFGSLLWDIRNKKLSFLIKEGVF---NNSIPGYSIRVDKKGSDGISLHNVM 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
N I A + + L + + S++ N ++ +
Sbjct: 176 IYDHTSNNGIAKIIIAKSGKMSKNDDYLLLTLHDGVRYEESNGKSSSYNPRQELTRMRFK 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ +
Sbjct: 236 ETDQKFDISSFKMNRTDEEGFRGNTQM 262
Score = 47.0 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ + E +F + + + I A + R + V I + I T+
Sbjct: 356 RNIIKVEIEFQKKFTLAASCLLLFFIGAPLGA-IIRKGGLGLPVVMAIVFFLFYHIIATV 414
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G L P + I+ L + +
Sbjct: 415 SEKSATQGSLTPFFGMWLAFIILSPLGAFLTYK 447
>gi|282879343|ref|ZP_06288087.1| putative membrane protein [Prevotella buccalis ATCC 35310]
gi|281298540|gb|EFA90965.1| putative membrane protein [Prevotella buccalis ATCC 35310]
Length = 635
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/226 (12%), Positives = 67/226 (29%), Gaps = 3/226 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + K + ++ + L + + S+ A
Sbjct: 1 MFRIKKLDLFIAKQFGLLFAGTFFICQFVLMMQFLWRYVDVLIGK-GLSMEVMAQFFWYM 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
++ Q +P L+ +++ F NL +SEL ++ GIS + +V S+++ +
Sbjct: 60 GLFLVPQALPLAILLASLITFGNLGESSELTAIKSAGISTMRTFRSLIVISVVVCFCSFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + S L+ + + + + +
Sbjct: 120 FQNYVGPSANMKMAQLMISMSQKNPELEIPEGIFYDGIPNSNLYVQKKDMDTGKLYGIMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + II L + K L + ++ +
Sbjct: 180 YRMTGSYEDQAIILADSGMLQTTADKKHLLLTLWSGEWFENMQSQE 225
Score = 38.5 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 23/95 (24%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + L + I A + R I V + + Y +
Sbjct: 363 GDRLLREHYIEMINKFTLALTCIIFFFIGAPLGA-IIRKGGLGIPVIVSVLVFIVYYLLD 421
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + I L+ + +
Sbjct: 422 NTGYRMARGDMWTVEFGKGLAPAVLIPLASFVTYK 456
>gi|149373007|ref|ZP_01891963.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
gi|149354367|gb|EDM42934.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
Length = 515
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 11/241 (4%)
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+LI++ ++ + + + + AK + EN+I +
Sbjct: 190 KNGYDYQELIEKDYKKQHREPYVKTYFEEYTINIDLTALNAKDVDQENNISNQNMYNIGE 249
Query: 186 KKNKIIHRKDAD---------LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+I DA +K K + + +P +
Sbjct: 250 LATEIDSLSDAYSKNLEQFAENMYHRTGSIKFKDEKTENIPVSDTVTSILDIYLPHERAD 309
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + K +K+ + + E + IV+ + + I A +
Sbjct: 310 IIGMAINNVNGTI-QAAKAKKEDSKNRVRKLNKYEIALHEKIVLGFACIILFFIGAPLGA 368
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + + I K+ + G + P I ++ + LSI +
Sbjct: 369 -IIRKGGMGLPMVVAVVLFLTYHFIGIFAKNSAEDGSIHPFLGTWISTLIMLPLSIWLTY 427
Query: 357 Q 357
+
Sbjct: 428 R 428
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 1/131 (0%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + + + +++ + IS P I+ ++P LV +++VF
Sbjct: 1 MFIFILQGIWLYISELAGK-DLDISIVLKFLWFYSPRIVTLVLPLSILVTSLMVFGGFAE 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
E ++ GIS+ + + V +LLGI N + E +L + +
Sbjct: 60 RYEFAAMKSTGISLQRAMRSLSVFILLLGITAFFFSNNVIPYSEYKWQNLRRNIQQFKPS 119
Query: 145 QKSDIIPWMQI 155
+ QI
Sbjct: 120 MVIAAGQFNQI 130
>gi|294084200|ref|YP_003550958.1| hypothetical protein SAR116_0631 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663773|gb|ADE38874.1| hypothetical membrane spanning protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 364
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 113/354 (31%), Gaps = 7/354 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + T + + ++++ ++ + I +++ T +PL + +
Sbjct: 6 YIFNQLFRATCVISMVLIGIMWLFQTIKLLELVVNK-GAPIFDFLLMSITVIPLWLTIAL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V VF + EL + +A+G+S QL + +LL + +
Sbjct: 65 PIAGFVAVNWVFHRILADRELTVMQAVGLSPAQLAKAPIALGMLLTSVLYFNSVYLLPTS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I DL ++ + P +FIG+++ + TIDK
Sbjct: 125 FGIYKDLQFNLRNGIPVILLQDGVF-TEVVPGLTMFIGSREENDVVSDVFIQDTRTIDKT 183
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI---KMDGFQKFSEQF 244
+ + Y+ + L + + +
Sbjct: 184 IILTAENGKFVGKDYHPTLILGNGQRLEVNSDGESGALLLFETHSLSLVTNEKKPSERIA 243
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL-EFSRSNQ 303
+ I + + ++ + ++ I P++ +A+ ++ +++L R +
Sbjct: 244 NDMNEDSISNLLDAKKSPYADYAFQRIAEGHYRIASPVLALALIMMVIAITLHGQLRRDL 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I L + + +S+ + + I L I + + L +
Sbjct: 304 WLRRSLINISCCLGLIVALILARSWTIT-MPHLWILIHIVTTLPILICGIALAR 356
>gi|153951328|ref|YP_001398257.1| hypothetical protein JJD26997_1188 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938774|gb|ABS43515.1| putative membrane protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 341
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 106/347 (30%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFI-QLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMTPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + +K K + Q EN I DK
Sbjct: 125 VFELQDNFV-NYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKHENIIMYRPKHKAGDK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ II ++ + L + Y + + +
Sbjct: 184 EQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGE-----------FDTLVVNTQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I I L +A TL A L R + +
Sbjct: 233 FNTDNLQTKKFYEYWNDLNENPQRAREFVIYITIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACLGIFSLSLFVSAY 331
>gi|126640321|ref|YP_001083305.1| hypothetical protein A1S_0228 [Acinetobacter baumannii ATCC 17978]
gi|332874943|ref|ZP_08442794.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
gi|332736886|gb|EGJ67862.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
Length = 341
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/319 (12%), Positives = 107/319 (33%), Gaps = 5/319 (1%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ S + R+P + I+P + ++VF L E+ + G+S
Sbjct: 12 VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRH 71
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QL + +++ + +++ + G + L ++
Sbjct: 72 QLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYT 131
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
++ I+ + K + +I K+A + ND + +V+ + I
Sbjct: 132 IYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEI 191
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ T + + ++ +S S + ++ ++ + +
Sbjct: 192 FPGQPKYT--QAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPVVRSELGWRLF 249
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P ++ +++ ++S R + ++ IF L ++ +K+ G L
Sbjct: 250 GPFTIIIALMLSVALSEVSPRQGRYYRLIP-SIFIFASLIVLMIAIKTRISKGELDIW-- 306
Query: 340 ALIPVILTISLSILILLQK 358
A +L +++ + +K
Sbjct: 307 AYPVALLVYAIAAALFSRK 325
>gi|217977121|ref|YP_002361268.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
gi|217502497|gb|ACK49906.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
Length = 380
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/366 (10%), Positives = 109/366 (29%), Gaps = 12/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L Y K T L I + + L + +P
Sbjct: 1 MPRLLTLYLAKRIGVTALLIEAMLCIPLVMTSLFQTLPAAAIRGGLLWPALLG----TLP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P V + F ++ + + +I +S+W L P ++ + +
Sbjct: 57 TVLYLALPLSVGVAVALEFSRMSSDGMIAVLYSIRLSVWSLCLPALIVAAAAVGAGYALS 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ IA S D+I +++ + + + + + +F + +
Sbjct: 117 SYIAPSYVGQMHDVIHVIRNSLNHRMLEPAHFYTFDKGARTMFFQRWRSADVAAGMFIYQ 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
+ +II+ ++A+ V + Q + L I ++
Sbjct: 177 YSAEKNEEQIINAEEAEFRRNEQGVVIVLNHGSIQTLPSGAQAMRNANFEQYALPIDMQG 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSF-SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
G + + + + ++ IP++ + L+A
Sbjct: 237 AGALPKRDWRGVFELPLGDFFAAIPPERWDPRGYAEWMSEAAKRCFIPILALTHALLAVG 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGF-MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ L + + +++ I + + + + + L++
Sbjct: 297 LVLTVAAATGRGSAATTSTVLAIPLIHVAILVGSESIVRENPHLIWLIALAIAAELGLAL 356
Query: 353 LILLQK 358
++ ++
Sbjct: 357 FLIARR 362
>gi|218459006|ref|ZP_03499097.1| putative permease protein [Rhizobium etli Kim 5]
Length = 250
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 11 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 70 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDN 129
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ + + +I + + + +
Sbjct: 130 IVEPRAKTVARQMIAETYADLLSSVIEEKTF 160
>gi|32491207|ref|NP_871461.1| hypothetical protein WGLp458 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166414|dbj|BAC24604.1| yjgP [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 357
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 57/351 (16%), Positives = 124/351 (35%), Gaps = 5/351 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K LK+ + L ++ F L I + M E L +P II
Sbjct: 2 IILKYLIKKILKSQFHILCILFLIFFCQKLVRILSSMSEEL-IPKKIIFFLLILYIPEII 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + +V L+ ++E++ + GI + + ++L+ F+ + + I
Sbjct: 61 KLILPLSLFISIALVMQKLHNSNEIISIKTCGIGNECFIKVILFLNLLVMSFSFVNVMWI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +I N DK K + + I + +F+ K +I+ +
Sbjct: 121 SPLALNYKHKIISYNLSNIDKLKLNEKQFKFIKDKNIILFVDNIKDKNLKNIFIVKFILK 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ K K + Y K++ + + F+
Sbjct: 181 NKEYIPVVFVSKHGSLYKDLLKNKNVINLNYGEYYEIDFKSNYFFIASFERYQIELFNTF 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S I + ++ + I I ++ M++I+ +++++ S Q
Sbjct: 241 SRLKEPSSEYVYFKNLFNSCI---EEYKLEYNWRITIVFSVLIMSIISFALNIKKLGSGQ 297
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ GIF + + T + S L + I + I SI +
Sbjct: 298 -FFNLFLGIFFYLIFFISQTFIYSNHSLFKLHSIFFMWIINFIYIFFSIAL 347
>gi|283957186|ref|ZP_06374650.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791362|gb|EFC30167.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 341
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 106/347 (30%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFI-QLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + +K K + Q EN I T DK
Sbjct: 125 VFELQDNFV-NYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKTDDK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ II ++ + L + Y + + +
Sbjct: 184 EQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGE-----------FDTLVVNTQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I L +A TL A L R + +
Sbjct: 233 FNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACLGIFSLSLFVSAY 331
>gi|325917726|ref|ZP_08179914.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
gi|325536055|gb|EGD07863.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
Length = 360
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/363 (9%), Positives = 103/363 (28%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + I L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVIIIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKNLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L+ + + +
Sbjct: 179 QKDDRLDVVTAERGAMFFEGKTDRYLRLEDGYRIEGPAAGDTLDYRLMKFASNDVALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRTHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|260642684|ref|ZP_05416897.2| putative permease [Bacteroides finegoldii DSM 17565]
gi|260621031|gb|EEX43902.1| putative permease [Bacteroides finegoldii DSM 17565]
Length = 632
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 76/255 (29%), Gaps = 4/255 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L +++ +S A +
Sbjct: 5 KKLDIFIVKSFFMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P V L + N
Sbjct: 64 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + LI K + + D + K + + D
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIP---DYNLKIAKKDRKTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + H AD + K + G + + + ++ + F E
Sbjct: 181 NLKDGFENAHIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSQNVPYRRESFRE 240
Query: 243 QFASRSFYEIIKKMS 257
+ F +
Sbjct: 241 KHTIIEFNSDFNMVD 255
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
S++ +SN + + +T+++ I I L + I A + R + V +
Sbjct: 354 FKSYTMESNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 412
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 413 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 455
>gi|57237667|ref|YP_178915.1| hypothetical protein CJE0913 [Campylobacter jejuni RM1221]
gi|86152068|ref|ZP_01070280.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153259|ref|ZP_01071463.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121613133|ref|YP_001000511.1| hypothetical protein CJJ81176_0843 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415093|ref|YP_001482349.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
81116]
gi|167005447|ref|ZP_02271205.1| hypothetical protein Cjejjejuni_04350 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315124344|ref|YP_004066348.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|57166471|gb|AAW35250.1| membrane protein, putative [Campylobacter jejuni RM1221]
gi|85840853|gb|EAQ58103.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842985|gb|EAQ60196.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87249473|gb|EAQ72433.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
gi|157386057|gb|ABV52372.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747735|gb|ADN91005.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
gi|315018066|gb|ADT66159.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315058276|gb|ADT72605.1| Predicted permease YjgP/YjgQ family [Campylobacter jejuni subsp.
jejuni S3]
gi|315928910|gb|EFV08167.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
gi|315931165|gb|EFV10138.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 341
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/347 (14%), Positives = 105/347 (30%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFI-QLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + +K K + Q EN I DK
Sbjct: 125 VFELQDNFV-NYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKADDK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ II ++ + L + Y + + +
Sbjct: 184 EQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGE-----------FDTLVVNTQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I L +A TL A L R + +
Sbjct: 233 FNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACLGIFSLSLFVSAY 331
>gi|332708721|ref|ZP_08428693.1| putative permease [Lyngbya majuscula 3L]
gi|332352575|gb|EGJ32143.1| putative permease [Lyngbya majuscula 3L]
Length = 116
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + I+ + + R + + I P + + L+ AS+S+ R ++
Sbjct: 1 MNILQAIEMIQLLKVAGDRKKLRMLQVRMQQKIAFPFICIIFGLVGASISIRPKRISK-G 59
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ F Y + ++ FG +GIL P+ AA +P + +L + E
Sbjct: 60 TSFGVCLIVIFGYYLLSFVIGGFGIAGILSPIVAAWLPNLFGFGAGGWLLWRLE 113
>gi|150010074|ref|YP_001304817.1| hypothetical protein BDI_3493 [Parabacteroides distasonis ATCC
8503]
gi|256838884|ref|ZP_05544394.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149938498|gb|ABR45195.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256739803|gb|EEU53127.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 651
Score = 60.9 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 78/265 (29%), Gaps = 2/265 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L + +V + L + M I A + +
Sbjct: 5 KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYAALFL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N
Sbjct: 64 VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L+ + + + + +
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183
Query: 183 TIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++I L + + L + + + +TT + FS
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFS 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ F + S N +
Sbjct: 244 SKDILIEFDANFNRTDESFMQNQYM 268
Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I +
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNM 439
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + ++ + I + +
Sbjct: 440 GFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472
>gi|182677588|ref|YP_001831734.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|182633471|gb|ACB94245.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
Length = 386
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/370 (9%), Positives = 114/370 (30%), Gaps = 20/370 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L Y + + L + + + L +P
Sbjct: 1 MPRLLTLYLTRRIALSVLMIEASLCLPLVMTSLFSALPPAAVRGGLIWPALLG----TLP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P + + F+ + + + ++ +S+W + P +V +++ F V
Sbjct: 57 TVLYIALPMAVGIAIALEFYRMASEGMIAVLYSLRLSVWSICLPGIVIAMVCVFFGYFVA 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A + D++ +++ + + + + N + ++ +
Sbjct: 117 SFVAPNYVGQMHDVVHVIRNSLNHRMLEPAHFYTFDNGSKTLYFQRWRSSDVVSGMFIHQ 176
Query: 181 SITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKM 234
K+ +II A+ N + L + + I ++
Sbjct: 177 FSDEKKEEEIITASIAEFRRNENGVMLVLSDGSIESRPEGATAIHTAHFDEYVIPIDMQG 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-RAETQFYFLIVIPLMLVAMTLIAAS 293
G + +++ + ++ +P + ++ T++A
Sbjct: 237 TGGMPKRNWRGVFEVPALEFFRERPQQADDPRRFSEWTSEATKRFAVPFLALSHTILAMG 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL--LPVAAALIPVILT---I 348
+ L + + + F++ + I+ G ++ P + + +
Sbjct: 297 LVLTLANATGRSTKAG---LTAFIVVPLAHILILIGAETLVRQDPRL-VWLVGLAIAAEL 352
Query: 349 SLSILILLQK 358
+ +L +K
Sbjct: 353 GVGCYLLYRK 362
>gi|260592583|ref|ZP_05858041.1| putative permease [Prevotella veroralis F0319]
gi|260535353|gb|EEX17970.1| putative permease [Prevotella veroralis F0319]
Length = 644
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 3/226 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + K + ++ ++ + L + + S+
Sbjct: 1 MFRIKKLDIFIAKQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGK-GLSMEVLGQFFWYM 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+++ +
Sbjct: 60 SLMMVPQALPLAILLSSLIAYGNLGESSELTAIKSAGISLIQSFRGLIVISVIIAGASFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I +K L+ + + + + +
Sbjct: 120 FQNNIGPMAQKNMAQLLISMRHKSPELEIPEGVFYDGIPQTNLYVERKDMKSGHLYNIMV 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + II L K + + ++ +
Sbjct: 180 YRMTDSYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQE 225
Score = 41.6 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E +F I L+ + I A + R I + + + Y +
Sbjct: 363 GDKMIRQHEIEFINKFTISLICIVFFFIGAPLGA-IIRKGGLGIPIIVSVLVFIVYYILD 421
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + + + + ++ +
Sbjct: 422 NTGYRMSRQGDWAIWFGRGLSMAVLVPMAAFFTYK 456
>gi|298374434|ref|ZP_06984392.1| permease [Bacteroides sp. 3_1_19]
gi|298268802|gb|EFI10457.1| permease [Bacteroides sp. 3_1_19]
Length = 651
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 78/265 (29%), Gaps = 2/265 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L + +V + L + M I A + +
Sbjct: 5 KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYAALFL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N
Sbjct: 64 VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L+ + + + + +
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183
Query: 183 TIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++I L + + L + + + +TT + FS
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFS 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ F + S N +
Sbjct: 244 SKDILIEFDANFNRTDESFMQNQYM 268
Score = 53.5 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I +
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNM 439
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + ++ + I + +
Sbjct: 440 GFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472
>gi|307718798|ref|YP_003874330.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
6192]
gi|306532523|gb|ADN02057.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
6192]
Length = 424
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+F+ IP + L+A ++ L + GIF + + ++ +
Sbjct: 331 QIYTLEFHKKFSIPFSCIPFVLLAIAIGLFNLK-GGRAAGFGIGIFLSILYWGMLVAGQM 389
Query: 328 FGKSGILLPVAAALIPVILTISLSILILL 356
G P A +P IL +++ + L
Sbjct: 390 LGLRTSFSPSLAMWLPNILITLVALTLFL 418
>gi|57242053|ref|ZP_00369993.1| probable integral membrane protein Cj0313 [Campylobacter
upsaliensis RM3195]
gi|57017245|gb|EAL54026.1| probable integral membrane protein Cj0313 [Campylobacter
upsaliensis RM3195]
Length = 350
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 97/353 (27%), Gaps = 8/353 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I + + YLK + +DL + S + +
Sbjct: 1 MSIFFHFISFIYLKNFFILFFALVGFYCGVDLLLNFKDLP----ASANLILLYVLFVGFS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + ++ F + R +E V A+G+S +++ + ++L + +
Sbjct: 57 AVTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYIGLNF 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + NG K +++ + + + + E I+
Sbjct: 117 TSFAY----ANEYKRSILKNGVLNKKSSDIFLKFNEEFVYVKSLDEGLAKELKIFSLKDG 172
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + +N L S
Sbjct: 173 NLSHLIQAKRALFNENSWLLEEGNITYIPKEFVLGENGYKSENFANLETLEGFKPKLAKS 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + + Y LI P + LI +R
Sbjct: 233 VASGKEYSIYDAYQSLILFDSQGLNTRNVKIALYKLIFAPFFAPFLMLIMYYYFPVIARF 292
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ +++ + + ++G++ ++P +L ++ I
Sbjct: 293 FNLAFVAFVAFVVTLVVWGGLFVFLRLSENGVISGEFGIILPNLLLAFFALFI 345
>gi|292572537|gb|ADE30452.1| Putative permease [Rickettsia prowazekii Rp22]
Length = 377
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 122/355 (34%), Gaps = 5/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 23 KYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPTLLFIL 80
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ + ++ NL +L+I + G++ QL P + ++ + + + + I
Sbjct: 81 LPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISSTILPL 140
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ K+N + + +I+ N I +
Sbjct: 141 SHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRNADNP 200
Query: 187 KNKIIHR---KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I+ L++ + + +S + + + ++
Sbjct: 201 SVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNSSLTSQRTQN 260
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ Y I + ++ S+ I + + + I+ PL + +A +V L + S +
Sbjct: 261 NKEANEYYISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLALAVFLRYPYSKK 320
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + T I + S L + A +++ +++ + +L+ K
Sbjct: 321 TTFMPVLFSALTVLFVTAIHFILQNFASKNLDFIFACYFNLLVALTIGLYLLVHK 375
>gi|327314112|ref|YP_004329549.1| permease [Prevotella denticola F0289]
gi|326944181|gb|AEA20066.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
Length = 645
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 3/226 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + + + ++ ++ + L + + S+
Sbjct: 2 MFRIRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGK-GLSMDVLGQFFWYM 60
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+ +
Sbjct: 61 SLMMVPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFY 120
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + S +K L+ K + + + +
Sbjct: 121 FQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMV 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + II L K + + ++ +
Sbjct: 181 YRMTDSYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQE 226
>gi|111115643|ref|YP_710261.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
gi|110890917|gb|ABH02085.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
Length = 355
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/353 (15%), Positives = 116/353 (32%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N S+ + +P
Sbjct: 3 IDKLFVKSIILTFLSMNLIFMILIILGDLFVNLLNFLEK-NISLKDIFYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+ + ++L P ++ S+ + + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ N II K + + + + I
Sbjct: 122 IDTVAKRDLLIKNSIGNNGSIDKTIII-----RDLAREIYNIKSYDIDENAFSNLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D + A ++K KL + E+ I +N+ + + + +
Sbjct: 177 DSKDEFQTRYDINKAEWKDNKWKLYGIREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ + + L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKSEHLNYSDALFDLLNRIFFSFRLMLLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ I + ++ L+
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFSFLADLGYLNIYVASSFTTIFFLIINFLV 349
>gi|288925668|ref|ZP_06419600.1| putative permease [Prevotella buccae D17]
gi|288337606|gb|EFC75960.1| putative permease [Prevotella buccae D17]
Length = 638
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 1/151 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L +++ S+ A ++
Sbjct: 5 KKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGK-GLSMEVLAQFFWYMSLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q + ++++ + N
Sbjct: 64 VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
I L+ K + + +
Sbjct: 124 IGPQANMKITQLLISMKQKSPELEIPEGIFY 154
Score = 44.3 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E + + + I A + R + V + + Y +
Sbjct: 364 GDRIIRQHEIEAINKFTLAFSCLIFFFIGAPLGA-IIRKGGLGVPVIVSVLVFIVYYILD 422
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + + I L+ + +
Sbjct: 423 NTGYRMARGGMWAVWFGKGLAPAVLIPLAAFVTYK 457
>gi|313203466|ref|YP_004042123.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
WB4]
gi|312442782|gb|ADQ79138.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
WB4]
Length = 493
Score = 60.5 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 1/151 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ Y FK ++ L L + ++ + L + +++ S A + +
Sbjct: 5 KKIDSYIFKRFITQFLMTFLICIFILLMQFLWKHVSELIGK-GVGWSVLAEFFIYAIFSV 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL +A GIS+++++ P ++ + + N
Sbjct: 64 VPMALPLAILLASLMTFGNLGENFELTAMKAAGISLFRIIRPLIIFISFVCVGAFFFSNY 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
+ + L+ K + +
Sbjct: 124 VLPVAQTKLYTLVISLKQKSPELDIPTGEFY 154
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ S + + + E + + + + I A + R + V +
Sbjct: 353 EYNKTMIGSQVTYITKHEIERHRKFTLSFACLIFFFIGAPLGA-IIRKGGLGMPVVISVI 411
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I K G+ L + + + + I + +
Sbjct: 412 MFIIYYIIDNTGYKMVKEGLWLSYQGMWLSSFVLLPIGIFLTYK 455
>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
Length = 385
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/346 (15%), Positives = 118/346 (34%), Gaps = 15/346 (4%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
T + L A +LV + + + + +LAAT +P +I + PF L+
Sbjct: 5 TFWSLTAATLLVMTTQVLIRVD-VLTTTGQAFGAFMLLAATIIPSVISVVAPFALLIGVS 63
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V +N SELV+ A G +L P + S+ L I +LV N + + D++
Sbjct: 64 QVLSGMNSDSELVVIEAAGARPATVLRPVMALSVALSIMVLLVANFVEPWSNRKLYDVLA 123
Query: 137 QWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
Q + + +M + ++ I + + +I K I
Sbjct: 124 QAQSDLFSVAVRSGTFMKLEDGLYVQVNEKLPGGALSGIFLSDTRTDGTEAIYYAKSGVI 183
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
D ++ ++ + +++ + Q + + + + + S +
Sbjct: 184 QPEGDTNILLLLDGELQQRDTSNDQISIVTFSSYALDMAAFVPAGQNAARRPKEQSTGYL 243
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML--VAMTLIAASVSLEFSRSNQPRIIV 308
+ + + Q + + PL +A + + S + ++
Sbjct: 244 LAPPSDDYYAGNAPYIIKEELVQRFSTWLYPLAFGLIAFAFLGKARSNRHEQFQNGALVA 303
Query: 309 AYGIFS-GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + GF Y++ S V + L+P +L + L
Sbjct: 304 GIALGARGFGFYSVEEAGASSAME-----VLSYLVPGMLIVLFGAL 344
>gi|224373131|ref|YP_002607503.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
gi|223589255|gb|ACM92991.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
Length = 340
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 113/352 (32%), Gaps = 18/352 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K Y K L L +ID +++ + N + +
Sbjct: 5 YIIKKYAKNFLLILFSLAFFFVIIDFIANFSKLPDSSNLQVLYLYYIVLYS----FDMFY 60
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + + + + + +ELV ++G S+ ++L PF+ S L+ + + +
Sbjct: 61 PLAIVFSFLFTMYYMIKFNELVSFYSLGFSVKKILKPFLTFSFLIFFIFIALDSGKMAYV 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ ++ + + + + + I A I + + K
Sbjct: 121 REYADSILNKRQYSNTNLFIKFNDKIIYIKKIKPILKEAIDIR-----------VFVLKD 169
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
K+ A A+ ND + K I K + K
Sbjct: 170 GKVKKIISAKKAVFVNDIWQAKNAEITFINDKKITKIRNDIFFLKNFKP--KIVSNLKKL 227
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + + + + ++ I L L+ + ++ R + +
Sbjct: 228 NSISLYDAIIAIKIFKDVNVNTLLSMVFYKIFTALSLIGLIIVFIFQVPIHQRISNVSLF 287
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ +F +++ I ++ F K G++ P +P + S + +L+++E
Sbjct: 288 LVKSVFLTILIWGIQLMIYKFSKQGVISPYVLM-VPCFIIYSYGVYLLIKEE 338
>gi|205356326|ref|ZP_03223091.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205345711|gb|EDZ32349.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 341
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 106/347 (30%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFI-QLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + +K K + Q EN I DK
Sbjct: 125 VFELQDNFV-NYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKADDK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ II ++ + L + Y + + +
Sbjct: 184 EQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGE-----------FDTLVVNTQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I I L +A TL A L R + +
Sbjct: 233 FNTDNLQTKKFYEYWNDLNENPQRAREFVIYITIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACLGIFSLSLFVSAY 331
>gi|325527102|gb|EGD04517.1| YjgP/YjgQ like transporter [Burkholderia sp. TJI49]
Length = 363
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/353 (9%), Positives = 89/353 (25%), Gaps = 45/353 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI TS
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K N ++ + + V L+ Y +
Sbjct: 181 NGKVNVVVSQTGHTETRDGDRFVVLENGRRYDGTPGQPNFKIMEFQRYGVKITSTPVVNV 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + +F + +PL+ + + ++ ++ + R ++
Sbjct: 241 PTTNSTPTLD--------LLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLAYQNPRRSR 292
Query: 304 P------------------------------------RIIVAYGIFSGFMLYT 320
+ + GF+ +
Sbjct: 293 TINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLLGLHLIVAAIVGFIFWL 345
>gi|315606454|ref|ZP_07881469.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315251860|gb|EFU31834.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 638
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 1/151 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L +++ S+ A ++
Sbjct: 5 KKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGK-GLSMEVLAQFFWYMSLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q + ++++ + N
Sbjct: 64 VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
I L+ K + + +
Sbjct: 124 IGPQANMKITQLLISMKQKSPELEIPEGIFY 154
Score = 44.3 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E + + + I A + R + V + + Y +
Sbjct: 364 GDRIIRQHEIEAINKFTLAFSCLIFFFIGAPLGA-IIRKGGLGVPVIVSVLVFIVYYILD 422
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + + I L+ + +
Sbjct: 423 NTGYRMARGGMWAVWFGKGLAPAVLIPLAAFVTYK 457
>gi|15604701|ref|NP_221219.1| hypothetical protein RP871 [Rickettsia prowazekii str. Madrid E]
gi|6831726|sp|Q9ZC95|Y871_RICPR RecName: Full=Uncharacterized protein RP871
gi|3861396|emb|CAA15295.1| unknown [Rickettsia prowazekii]
Length = 360
Score = 60.1 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 122/355 (34%), Gaps = 5/355 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ + ++ NL +L+I + G++ QL P + ++ + + + + I
Sbjct: 64 LPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISSTILPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ K+N + + +I+ N I +
Sbjct: 124 SHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRNADNP 183
Query: 187 KNKIIHR---KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I+ L++ + + +S + + + ++
Sbjct: 184 SVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNSSLTSQRTQN 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ Y I + ++ S+ I + + + I+ PL + +A +V L + S +
Sbjct: 244 NKEANEYYISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLALAVFLRYPYSKK 303
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + T I + S L + A +++ +++ + +L+ K
Sbjct: 304 TTFMPVLFSALTVLFVTAIHFILQNFASKNLDFIFACYFNLLVALTIGLYLLVHK 358
>gi|86150264|ref|ZP_01068491.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597526|ref|ZP_01100760.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|218562454|ref|YP_002344233.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839380|gb|EAQ56642.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190118|gb|EAQ94093.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|112360160|emb|CAL34954.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284926071|gb|ADC28423.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315927714|gb|EFV07043.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 341
Score = 59.7 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/347 (14%), Positives = 105/347 (30%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFI-QLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + +K K + Q EN I DK
Sbjct: 125 VFELQDNFV-NYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKADDK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ II ++ + L + Y + + +
Sbjct: 184 EQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGE-----------FDTLVVNTQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I L +A TL A L R + +
Sbjct: 233 FNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACLGIFSLSLFVSAY 331
>gi|78067267|ref|YP_370036.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
gi|77968012|gb|ABB09392.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
Length = 363
Score = 59.7 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/353 (9%), Positives = 90/353 (25%), Gaps = 45/353 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI TS
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K N ++ + + V L+ Y + +
Sbjct: 181 NGKVNVVVSQTGHTETRDGSRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSTPVTNV 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + +F + +PL+ + + ++ +S + R ++
Sbjct: 241 PTTNSTP--------TPDLLRNPTNDNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRSR 292
Query: 304 P------------------------------------RIIVAYGIFSGFMLYT 320
+ + + F+ +
Sbjct: 293 TINLVMAVLIYLTYSNLLNVVQSQIEQGKMSFGVGLVGLHLVVAVIVAFIFWL 345
>gi|225010828|ref|ZP_03701296.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-3C]
gi|225005036|gb|EEG42990.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-3C]
Length = 462
Score = 59.7 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+ + L + + + A + R + + I Y +
Sbjct: 347 YNMHALSLHKKYALALSCIVLFFVGAPLGA-IIRKGGLGLPMVIAIVLFLTYYFLGVFTY 405
Query: 327 SFGKSGILLPVAAALIPVILTISLSILI 354
++ K G + P A IP ++ + L I +
Sbjct: 406 NYAKEGNISPFFGAWIPTLVMLPLGIFL 433
Score = 52.0 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/245 (11%), Positives = 72/245 (29%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+ +F+ + + +P + ++++P L+ +I+ F
Sbjct: 1 MFIFIFQSIWLYIDNLAGKGLDLVIIGKFIFYLLPNLTEKVLPLTVLLSSILTFGTFAEH 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
E +A GIS+ + + +V +LG+ T + I + E L +
Sbjct: 61 YEFAAMKASGISLQRSMRTLIVLVSVLGLVTFYFADRIIPAAELKSYSLKKNIAKVKPAV 120
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+ + I + K + ++ + D + K + ++ ++
Sbjct: 121 AIAEGLFSEFEGTGMTILVQEKYGENDRYLRDVTIHKKTDNQINTTVIKAKEGELLSSEN 180
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
L K+V +T+ N F + E+
Sbjct: 181 SNLIKLVLKDGHYYESLSVTTSKNHQKHPYAVSNFETYTINIDLTELNMVDMDEQTEGNS 240
Query: 266 HNYRA 270
+
Sbjct: 241 DKMKN 245
>gi|330813916|ref|YP_004358155.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487011|gb|AEA81416.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
Length = 358
Score = 59.7 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/350 (10%), Positives = 98/350 (28%), Gaps = 8/350 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L YF L++ + L L+++ + S+S ++P I+
Sbjct: 6 LNNYFIAEILRSYAFVLATLSFLIWIAQSARFL-YLITDMGLSMSVYVPYILYQLPKIVS 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q++ L+ + E+ I G+S ++ + S++ + +A
Sbjct: 65 QMMLISFLISLFISIIKFQNNKEMEIYWLSGVSKKTIVWTILKISLVPTFVAFFLYIYLA 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I +++ + + + ++
Sbjct: 125 PMTGLISRNILANSEFTFVNALVKKNNF------NSPFRNLTVYVGENDNRGNLEKVYLF 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ II ++ L + + ++L +Q + + ++ +
Sbjct: 179 ENNKTIIAKQGKVLNVDNKNYLQLIDGFIHQKNKNGKIQIIKFEETLYDFTKYKSNLTTY 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
++ + +N + + I PL + + L+ + +
Sbjct: 239 PKLQERSLLWLFNELK-NNRKEKNNTIFEIHKRIFKPLFIPIIALLCCFILYGNNEKFNL 297
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I+ S S I P+ + I + +
Sbjct: 298 VKLRFSIFSLSVLFIIFFEILISLSSSNIFFQYFLYSFPMCVGIIIYFFL 347
>gi|153808346|ref|ZP_01961014.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
gi|149129249|gb|EDM20465.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
Length = 638
Score = 59.7 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 1/158 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K ++ + + + + L +++ +S A +
Sbjct: 11 KKLDIFIVKSFMMLFVGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTL 69
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F N EL+ +A GIS+ +++ P V L + N
Sbjct: 70 VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGISFYFQNV 129
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
+ + LI K + +
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYN 167
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 1/239 (0%)
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N A S + + ++ + + AK + +
Sbjct: 224 FENLKAQSMKSQNVPYRRESFREKHTIIEFDSDFNMVDGDIMGRQSSAKDMAQLQSSIDS 283
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + K + + +S P+
Sbjct: 284 MKVLGDSIGRQYYKEVAEGNFRASYGLTKEDTAKIEKADIQEYNVDSLYEVSPLMQKQKV 343
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + + + S++ ++N + + +T+++ I I L + I A +
Sbjct: 344 ISSAVSRAENMASDLTFKSYTMETNDYAIRKHKTEWHKKITISLSCLLFFFIGAPLG-GI 402
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + V + + Y I + G + + L I + +
Sbjct: 403 IRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 461
>gi|312148449|gb|ADQ31108.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi JD1]
Length = 355
Score = 59.3 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 112/353 (31%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N + + +P
Sbjct: 3 IDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK-NIGLKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+ + ++L P ++ SI + + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L++ + I K + + + + I
Sbjct: 122 IDTIARRDVLVKNSIGDS-----RSGDKTIIIRDFAREIYNIKSYDIDENTFANLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D + A ++K +L + E+ I +N+ + + +
Sbjct: 177 DNKDEFQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ F+ L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKAERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ I + ++ +
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 349
>gi|332851503|ref|ZP_08433500.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332866797|ref|ZP_08437201.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332729956|gb|EGJ61287.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332734405|gb|EGJ65525.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
Length = 341
Score = 59.3 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/319 (11%), Positives = 107/319 (33%), Gaps = 5/319 (1%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ S + R+P + I+P + ++VF L E+ + G++
Sbjct: 12 VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVNRH 71
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QL + +++ + +++ + G + L ++
Sbjct: 72 QLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYT 131
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
++ I+ + K + +I K+A + ND + +V+ + I
Sbjct: 132 IYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEI 191
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ T + + ++ +S S + ++ ++ + +
Sbjct: 192 FPGQPKYT--QAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPVVRSELGWRLF 249
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P ++ +++ ++S R + ++ IF L ++ +K+ G L
Sbjct: 250 GPFTIIIALMLSVALSEVSPRQGRYYRLIP-SIFIFASLIVLMIAIKTRISKGELDIW-- 306
Query: 340 ALIPVILTISLSILILLQK 358
A +L +++ + +K
Sbjct: 307 AYPVALLVYAIAAALFSRK 325
>gi|15595153|ref|NP_212942.1| hypothetical protein BB0808 [Borrelia burgdorferi B31]
gi|195941982|ref|ZP_03087364.1| hypothetical protein Bbur8_03794 [Borrelia burgdorferi 80a]
gi|216264628|ref|ZP_03436620.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
156a]
gi|218249833|ref|YP_002375306.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
ZS7]
gi|221217616|ref|ZP_03589085.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
gi|223889339|ref|ZP_03623926.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
gi|224533064|ref|ZP_03673669.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
gi|224533456|ref|ZP_03674049.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
gi|225549381|ref|ZP_03770353.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
gi|225550246|ref|ZP_03771205.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
gi|226321273|ref|ZP_03796801.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
gi|2688753|gb|AAC67159.1| predicted coding region BB0808 [Borrelia burgdorferi B31]
gi|215981101|gb|EEC21908.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
156a]
gi|218165021|gb|ACK75082.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
ZS7]
gi|221192562|gb|EEE18780.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
gi|223885260|gb|EEF56363.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
gi|224512000|gb|EEF82396.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
gi|224513418|gb|EEF83776.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
gi|225369114|gb|EEG98568.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
gi|225370009|gb|EEG99450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
gi|226233305|gb|EEH32056.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
gi|312149740|gb|ADQ29811.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi N40]
Length = 355
Score = 59.3 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 112/353 (31%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N + + +P
Sbjct: 3 IDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK-NIGLKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+ + ++L P ++ SI + + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ + I K + + + + I
Sbjct: 122 IDTIARRDVLIKNSIGDS-----RSGDKTIIIRDFAREIYNIKSYDIDENTFANLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D + A ++K +L + E+ I +N+ + + +
Sbjct: 177 DNKDEFQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ F+ L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKAERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ I + ++ +
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 349
>gi|57168449|ref|ZP_00367583.1| probable integral membrane protein Cj0313 [Campylobacter coli
RM2228]
gi|57020257|gb|EAL56931.1| probable integral membrane protein Cj0313 [Campylobacter coli
RM2228]
Length = 352
Score = 59.3 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 108/354 (30%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK L + IDL N + + N S+ LA +
Sbjct: 3 IFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ ++ R +E V A+G+S ++ + ++ V +
Sbjct: 59 TYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFTP 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + + + +D +
Sbjct: 119 FAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYISKVNNGQSTAQNIKIFNIKDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ I K + N + K+ G + K + +
Sbjct: 179 FIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFKELNTLEGFKPKIIEGVASD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + Y L+ +P + LI +R
Sbjct: 239 SDYSILDILESL--ELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + ++ ++ ++G++L ++P++L I L + +
Sbjct: 297 LAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFMFYK 350
>gi|283954397|ref|ZP_06371917.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794014|gb|EFC32763.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
jejuni 414]
Length = 341
Score = 59.3 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 102/347 (29%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFTIVSMVFFI-QLAKLTSSIQISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISALMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + IFI + +I D
Sbjct: 125 VFELQDNFVNYKSIQVKFNYKTGE--FGQKFLDWMIFIEKQDSGKYENIIMYHPKHKADD 182
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
K ++I K+A + + + S + + F
Sbjct: 183 KEQLIIAKEAHVQRKDDGFAFSLNQGKMYNFDQGQSIFSGEFDTLVVNTQF--------- 233
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + K + +++ N + +F I L +A TL A L R + +
Sbjct: 234 -NTDNLQTKKFYEYWNDLNENPQRAREFVIYATIALFPLASTLFALCFGLVTYRYEKGYV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + P+ A L++ +S
Sbjct: 293 YLGMFGVIAIYFGLLSSFSQ--------PPILACFGIFSLSLLVSGY 331
>gi|289678194|ref|ZP_06499084.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 284
Score = 59.3 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 81/271 (29%), Gaps = 16/271 (5%)
Query: 95 GISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
G S +LL + + L+G+ + +A G LI Q + +
Sbjct: 1 GRSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQA 60
Query: 155 ISNPQQDIFI--------GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV 206
+ + + + + S + + ++ + +
Sbjct: 61 LRDGTRITYTKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFL 120
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
L+ Y D + M + SE+ R + +
Sbjct: 121 ILENGYRYDGNPGAADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGN-------P 173
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
R+ + + I +PL + +TL+A +S R + + + I I+ ++
Sbjct: 174 APRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRY-LKLLPAILLYMSYLAILISVR 232
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQ 357
S + G L + +S+ +L+
Sbjct: 233 SSLEKGKLPLSLGMWWVHAIYLSIGLLLFYW 263
>gi|301346207|ref|ZP_07226948.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
Length = 201
Score = 59.3 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 1/158 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD 161
G + L ++
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIY 158
>gi|289612795|emb|CBI60020.1| unnamed protein product [Sordaria macrospora]
Length = 187
Score = 59.3 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 2/152 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP I RY + LL + +L+ + + + + + +S + A +P
Sbjct: 1 MPSI-DRYMARLIAVPLFSTLLISAMLLVLDRMLRLFDFVAAEGG-PVSVVWRMLANLLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP ++ ++ F L +SEL + +G+S W+LL + + +L + ++
Sbjct: 59 EYLGLGIPIGLMLGILLAFRKLATSSELDVMLGVGMSYWRLLRVPFIYATVLAAANLAIV 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
I L + + + +
Sbjct: 119 GYIQPLARYNYEALRFELRTGALGASIKVGEF 150
>gi|261879842|ref|ZP_06006269.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333501|gb|EFA44287.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 642
Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 1/221 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + + + L ++ + L + + S+ A ++
Sbjct: 6 KKLDIFITRQFGLLFLGTFFICQFVLMMQFLWRFVDDLIGK-GLSMEILAQFFWYMALML 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q P L+ +++ F NL +SEL +A GIS+ Q ++ ++++ + + N
Sbjct: 65 VPQAFPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLILITMIICLGSFYFQNN 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L+ K + + + + + +
Sbjct: 125 IGPMANMKLAQLLFSMKQKSPELEIPEGVFYDGIPNTNLYVQKKDVKTGKLYGIMIYRMT 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ II L + K L + ++ ++
Sbjct: 185 QSYEDAAIILADSGMLQSTADKKHLLLSLWSGEWFENMQNQ 225
Score = 40.1 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N + E + + L + I A + R + V + + Y +
Sbjct: 364 NERVIRQHEIEAINKFTLALQCLIFFFIGAPLGA-IIRKGGLGVPVIVSVLVFIVYYILD 422
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + L ++ + +
Sbjct: 423 NSGYRMARLGVWAVWFGRGLAPALLTPVAAFVTYK 457
>gi|237718006|ref|ZP_04548487.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452647|gb|EEO58438.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 380
Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 102 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 160
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + + +
Sbjct: 161 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFLTYK 203
>gi|240948566|ref|ZP_04752939.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
gi|240297074|gb|EER47645.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
Length = 309
Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/293 (12%), Positives = 88/293 (30%), Gaps = 6/293 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA GI L + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L+ + K N +M + I + + D
Sbjct: 61 WLTPWAINKQSELLAEAKANPRFSALSAGQFM----TAGGYVLFIDNINYDQNKLNDIYV 116
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D++ K + +++ + + + +
Sbjct: 117 FQPDQQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYL 176
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S +++++ ++ A + + + M L+A +S R
Sbjct: 177 GHQDVDSDEKLVQRADWAKLVADKS-PEARAELQWRFALIFATPIMALLAVPMSSVNPRQ 235
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + + +KS G SG L P + + + L I++
Sbjct: 236 GRFAKLLPALLLYLIYF-LLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287
>gi|298207835|ref|YP_003716014.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
HTCC2559]
gi|83850473|gb|EAP88341.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
HTCC2559]
Length = 456
Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + V+ + + A + R + + I + I K+
Sbjct: 336 NKYEIALHEKYVLAFACFILFFVGAPLGA-IIRKGGMGLPMVIAILLFLTYHFIGIFAKN 394
Query: 328 FGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + P A + I+ + L + +
Sbjct: 395 SAEDGSISPFIATWLSTIIMLPLGVYFTYR 424
>gi|86142618|ref|ZP_01061057.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
MED217]
gi|85830650|gb|EAQ49108.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
MED217]
Length = 514
Score = 59.3 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ E + V+ + + + A + R + + G+ + I K+
Sbjct: 343 KYEIALHEKFVLAFGCIILFFVGAPLGA-IIRKGGLGLPIVIGVVLFLTYHFIGIFAKNS 401
Query: 329 GKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + A+ + ++ L + + +
Sbjct: 402 AEDGSVAAWLASWLSTLILFPLGVYLTYR 430
>gi|296137009|ref|YP_003644251.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
gi|295797131|gb|ADG31921.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
Length = 377
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/336 (10%), Positives = 100/336 (29%), Gaps = 7/336 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L + + +V + L I Q + S +L +
Sbjct: 2 LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASD-GQASPQDVFLLIGLTALSYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +I + ++ F + SE+ I R G+ +L+ + S + + +
Sbjct: 61 QIVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMVSVLRFSWPILLLIAALTLFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +++ D + + + ++ ++ FI T
Sbjct: 121 WPWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I R I + L Y Q +S + +
Sbjct: 181 SGQTVLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATTGLSN 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ + + + + + +PL + L+A ++
Sbjct: 241 VADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRLGVPLSAALLALMALPLASGS 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
R+ + +++ I + + ++ +++ + G +
Sbjct: 301 VRTGRAGSLIS-AILVYLIYFNLLNVLQGWISEGRV 335
>gi|219684936|ref|ZP_03539877.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
gi|219671674|gb|EED28730.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
Length = 355
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N + +P
Sbjct: 3 IDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK-NIGFKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ N II K + + I
Sbjct: 122 IDTVARRDLLIKNSIGNSGSSDKTIII-----RDLAREIYNIKSYDINENAFSKLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D D A ++K +L + E+ I +N+ + + + +
Sbjct: 177 DSKDEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ + + L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ + + ++ L+
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLIINFLV 349
>gi|148651871|ref|YP_001278964.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
gi|148570955|gb|ABQ93014.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
Length = 494
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 1/176 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P IL RY + TT L ++L+ + + + + +P
Sbjct: 21 LPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFG-IAAEGRLDVGLLFSIIGYNLP 79
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P + ++VF L E+ + GIS +L + ++L + +
Sbjct: 80 YFLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLS 139
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
G K + QQ + ++ + + +
Sbjct: 140 LYGKPWGVKNSESIWQQQSLSSAFDLIRPQTFINSDDYHLYVGSMNDNKTELQDVI 195
>gi|152990135|ref|YP_001355857.1| hypothetical protein NIS_0386 [Nitratiruptor sp. SB155-2]
gi|151421996|dbj|BAF69500.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 343
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 117/351 (33%), Gaps = 16/351 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+RY YLK L L+ + +D ++ + N I + + I
Sbjct: 3 YRYLAINYLKYFLLLLISLTLFFVSLDYFQVFKSLPASANLQI----LYLYYKSLNAIDL 58
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P + I + L R++ELV A+G S ++ P + S+LL I + +
Sbjct: 59 LFPITLIFALIALKNRLIRSNELVAIYALGYSKRGVVMPVFLTSLLLTILYLFLHLTSFA 118
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ ++ + + + + + + L + +
Sbjct: 119 YADEYANNIKKYQSLSSAT---------KDLFFKYNNDYVFFEKLYPLNKRAQGIKVYEL 169
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIKMDGFQKFSEQ 243
+ K+ A A L + + + L+I K E
Sbjct: 170 ENQKLQKIIFAQSATFQKRSWHLSDATIVEVSDGKLIERKADLSILQNYKPKILDSVYEG 229
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+S + + ++ + + + + R + ++ ++ P + +I +R
Sbjct: 230 KSSITLIDALEAIKLLKQQS-LNVDRIKAIIFYQLLFPFFAPFLMIIIYYFVPVTARITN 288
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + +++ + + +G L A + P+ L + +++ +
Sbjct: 289 LNLFLFGATVTSLIVWGFLFTLVKLAFNGSLDAWYAIVFPISLLLVIALYL 339
>gi|312885912|ref|ZP_07745544.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
gi|311301719|gb|EFQ78756.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
Length = 463
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+RS +I+K + N R ++ + + + LI A + R
Sbjct: 324 NEARSLKDIVKPKGDTYIENDKILRRYLIEYQKKFTLSAACLVLFLIGAPLGA-IIRKGG 382
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ V + + Y I TI + K G + PV + + + + + +
Sbjct: 383 LGLPVVISVVFFLIYYIISTIGEKSAKDGNISPVLGTWVAIFVLAPIGLFL 433
>gi|257465009|ref|ZP_05629380.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
gi|257450669|gb|EEV24712.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
Length = 309
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/293 (12%), Positives = 89/293 (30%), Gaps = 6/293 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA GI L + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L+ + K N +M + I + + D
Sbjct: 61 WLTPWSINKQSELLAEAKANPRFSALSAGQFM----TAGGYVLFIDNINYDQNKLNDIYV 116
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D++ K + +++ + + + +
Sbjct: 117 FQPDQQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYL 176
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S +++++ ++ A+ + + + M L+A +S R
Sbjct: 177 GHQDVDSDEKLVQRADWAKLVADKS-PEAQAELQWRFALIFATPLMALLAVPMSSVNPRQ 235
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + + +KS G SG L P + + + L I++
Sbjct: 236 GRFAKLLPALLLYLIYF-LLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287
>gi|34540406|ref|NP_904885.1| hypothetical protein PG0598 [Porphyromonas gingivalis W83]
gi|34396719|gb|AAQ65784.1| hypothetical protein PG_0598 [Porphyromonas gingivalis W83]
Length = 651
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/105 (8%), Positives = 25/105 (23%), Gaps = 1/105 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
M S +++ P+ + I A + R + +
Sbjct: 367 CMIMKESTAFERDRRISHMREWHTKFTYPVACLIFFFIGAPLGA-IIRKGGLGTPIVASV 425
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y + T K+ + + + + +
Sbjct: 426 LFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGFFLTYK 470
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 59/188 (31%), Gaps = 1/188 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L +V + L + + M S + + +
Sbjct: 7 KRLYLFMLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGK-GLSAIILSKMLFYAAMTL 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+ +++++ P + + + N
Sbjct: 66 VPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQND 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + + + + + H +
Sbjct: 126 LMIQSQVKFYTILFSARRATPELEIPEGSFYNGIRGYNLFVAKKDRRTGMLHDMMIYDHS 185
Query: 183 TIDKKNKI 190
+I
Sbjct: 186 QGFADARI 193
>gi|146299866|ref|YP_001194457.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
gi|146154284|gb|ABQ05138.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
Length = 486
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 2/134 (1%)
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ TL + K + + + Y I + T Y VI
Sbjct: 320 DLLTLYTNKEKSDVLKMASSNVTSNIYSIETTQKDLKDK-QREINKHLTALYEKFVIAFA 378
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
M I A + R + + + + + I T K + G + P + +
Sbjct: 379 CFLMFFIGAPLGA-IIRKGGLGLPIVFAVLIFITFHFINTFGKRLSQEGGMSPFMGSWMS 437
Query: 344 VILTISLSILILLQ 357
+ L+IL+ +
Sbjct: 438 SFILSPLAILLTYR 451
Score = 46.2 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 1/162 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K +L T + + + + +++ + + +P
Sbjct: 1 MKILDKYLLKTFLFTFTTVFVILFFIFILQTVWLFISELAGK-DLDLLLVVKFLLFSMPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++P L+ +I+ F NL E ++ GIS+ + + ++ +L I N
Sbjct: 60 IIPLVLPLSVLLASIMTFGNLAENYEFAAMKSSGISLQRAMRVLIIFIFVLSIVAFWFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ E ++ + + + +
Sbjct: 120 NVIPYAEYKFVNFRKNIAQAKPAMAIAEGQFNDVGTYNIKVN 161
>gi|305432868|ref|ZP_07402026.1| integral membrane protein [Campylobacter coli JV20]
gi|304444022|gb|EFM36677.1| integral membrane protein [Campylobacter coli JV20]
Length = 352
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 109/354 (30%), Gaps = 6/354 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK L + IDL N + + N S+ LA +
Sbjct: 3 IFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ ++ R +E V A+G+S ++ + ++ V +
Sbjct: 59 TYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFTP 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + + + + +D +
Sbjct: 119 FAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYISKVNNGQSTAQNIKIFNIKDLNLSS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ I K + N + K+ G + K + +
Sbjct: 179 FIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFKELNTLEGFKPKIIEGVASD 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ K+ + Y L+ +P + LI +R
Sbjct: 239 SDYSILDILESL--ELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYFFPVIARFFN 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + ++++ ++ ++G++L ++P++L I L + +
Sbjct: 297 LAFVAFVAFVVTLLTWSMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFMFYK 350
>gi|294341186|emb|CAZ89587.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
Length = 377
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/336 (10%), Positives = 101/336 (30%), Gaps = 7/336 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L + + +V + L I Q + S +L +
Sbjct: 2 LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASD-GQASPQDVFLLIGLTALSYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +I + ++ F + SE+ I R G+ +L+ + S + + +
Sbjct: 61 QIVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMISVLRFSWPILLLIAALTLFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +++ D + + + ++ ++ FI T
Sbjct: 121 WPWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I R I + L Y Q +S + + +
Sbjct: 181 SGQTVLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATIGLSN 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ + + + + + +PL + L+A ++
Sbjct: 241 VADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRLGVPLSAALLALMALPLASGS 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
R+ + +++ I + + ++ +++ + G +
Sbjct: 301 VRTGRAGSLIS-AILVYLIYFNLLNVLQGWISEGRV 335
>gi|317503835|ref|ZP_07961845.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315665031|gb|EFV04688.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 632
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 1/163 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L +++ S+ A ++
Sbjct: 5 KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDELIGK-GLSMEVMAKFFWYMGLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q +V +I + + + N
Sbjct: 64 VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLIVITIFISGLSFVFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
I L+ + + + +
Sbjct: 124 IGPEANNKIAQLMISMQQKSPELEIPEGVFYDGIPNSNLYVQH 166
Score = 43.1 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E + + L + I A + R I V + + Y +
Sbjct: 361 GDRIIRQHEIEAVSKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIVSVLVFIIYYILD 419
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+SG+ + + L+I + +
Sbjct: 420 NSGYRMARSGMWTVWFGKGLAPGVLTPLAIFVTYK 454
>gi|188994506|ref|YP_001928758.1| hypothetical protein PGN_0642 [Porphyromonas gingivalis ATCC 33277]
gi|188594186|dbj|BAG33161.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 651
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/105 (8%), Positives = 25/105 (23%), Gaps = 1/105 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
M S +++ P+ + I A + R + +
Sbjct: 367 CMIMKESTAFERDRRISHMREWHTKFTYPVACLIFFFIGAPLGA-IIRKGGLGTPIVASV 425
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y + T K+ + + + + +
Sbjct: 426 LFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGFFLTYK 470
Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 60/188 (31%), Gaps = 1/188 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L+ + + +L L +V + L + + M S + + +
Sbjct: 7 KRLYLFMLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGK-GLSAIILSKMLFYAAMTL 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +++ F NL EL+ ++ G+ +++++ P + + + N
Sbjct: 66 VPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQND 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + + + + + + H +
Sbjct: 126 LMIQSQVKFYTILFSARRATPELEIPEGSFYNGIHGYNLFVAKKDRRTGMLHDMMIYDHS 185
Query: 183 TIDKKNKI 190
+I
Sbjct: 186 QGFADARI 193
>gi|57167826|ref|ZP_00366966.1| conserved hypothetical integral membrane protein, putative
[Campylobacter coli RM2228]
gi|57020948|gb|EAL57612.1| conserved hypothetical integral membrane protein, putative
[Campylobacter coli RM2228]
Length = 341
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 108/351 (30%), Gaps = 21/351 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY +L T L +V ++ ++ + + L +P
Sbjct: 1 MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFI-QLAKLTSSIEINFADLLKLYGFMLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P + + F L+R +E ++ +G S L F+ + L+ +++
Sbjct: 60 ILIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIAL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + +K K + Q + EN I
Sbjct: 120 VMIPIVFELQDNFV-NFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKR 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK+ II ++ + KL Y + +N TL I
Sbjct: 179 NIEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNF------ENGQTLFIGNFDKLIVNTQ 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + N + + +F + I L +A TL A S + R
Sbjct: 233 FNDQNLQTKKFYEYWNDLNTN-----PKRAKEFVIYVTIALFPLASTLFALSFGIVTYRY 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + + + P+ A + L+ SI
Sbjct: 288 EKGFIYFGMFGVIAVYFGLLSSFSQ--------PPILACIGIFALSFIASI 330
>gi|15605868|ref|NP_213245.1| hypothetical protein aq_359 [Aquifex aeolicus VF5]
gi|14916753|sp|O66685|Y359_AQUAE RecName: Full=Uncharacterized protein aq_359
gi|2983036|gb|AAC06646.1| putative protein [Aquifex aeolicus VF5]
Length = 356
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 116/351 (33%), Gaps = 10/351 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY +L L +++LV + L + E +PL
Sbjct: 2 LLDRYLLSRFLGIFLNVSFVSVLLVSLYALLDFLVGFKEKR---TDVALSYFLNILPLGF 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I + I+ + + ++ GIS + P ++ S+ L +L
Sbjct: 59 YYISFITLSISLILFLRKVFEKKMELTVQSFGISPLRFSLPVLLFSVFLSSTFLLGNEYA 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +K + + W + + + + +F ++
Sbjct: 119 FPKLLGNLWFIEKNYKKKQEVKGFIKNFWFIKKENEVKTYYHVGNLNLSDGSLFNFYTMK 178
Query: 184 -IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
K + + + ++ ++ Y + + +K + T + + + + FS
Sbjct: 179 VERKNLNPLEVLKVFSGVWKDKEIFIRSGEIYDFEKGKREKVFNKTFKLGLSIKEVELFS 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E+ S EI M S K + + ++ ++ L V +++ + + +
Sbjct: 239 EKIDFLSLSEIFFLMQKSKKVG-LNVDVYTGELFYRVMFSLSPVFISIFSLYLFFKHKVL 297
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+Q I +++ I+ PV +LIP+ L I S+
Sbjct: 298 SQVIPRFLVFIVILWLVILSPKILPQKANQ----PVLYSLIPIFLLILYSL 344
>gi|225851251|ref|YP_002731485.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
gi|225646479|gb|ACO04665.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
Length = 337
Score = 58.9 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/353 (12%), Positives = 104/353 (29%), Gaps = 19/353 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL+RY K LK L + I++ L + + + I+ L
Sbjct: 1 MKILYRYITKNILKNFLVLIAVFSIVIVSSQLLHL---PSVMYHADITNFFKLLFLMNLS 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ + F + ++ FN+ E+ + GI+ QL+ P VV S+++ +++V
Sbjct: 58 FLKFQLLFAFFLSTALLGFNMRENREIYAVYSAGITKGQLIKPLVVISLIIFTVSLIVSM 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + I + Q+S+ + EN +
Sbjct: 118 FVVPYANRERAKFITLNIKRYFLDAVQEKNFFQLSDNVTIYTEKKEGNRFENVFIYNRER 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D + +++ + R + + + K +
Sbjct: 178 GQTISAKE--AFFDTTTFFLKKGYIQIPDEKGFNILRFESYRFNIDVEYLKKYSIEDYRN 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ K + RA + I+ P + + ++ +
Sbjct: 236 KDLLMI------------IKKSKKDKNRALSVLTDRILFPFPFLFIGVLG--FMVGIKTQ 281
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++A + + + G + P A + + S++
Sbjct: 282 KGKDSVIATTVLISIVYLVLNFYFIKLIGKGKIDPSVYAFVLLAYFSSITYYF 334
>gi|255034852|ref|YP_003085473.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
gi|254947608|gb|ACT92308.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
Length = 498
Score = 58.6 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + + + + + + + + + + ++ A L +
Sbjct: 1 MKKLDKLILTSFWGPFVITMSVVVFVFLMRIMIFYIDDFVSK-DLNVMDYAQLFFFFSLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ +++ F NL EL ++ GIS+ + + P + ++ + +F+ +
Sbjct: 60 TVPTALPLAMLLSSLMAFGNLGEFFELTAIKSAGISVVRAMAPLFIVAVGISVFSFYFND 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
++ G L+ K K +
Sbjct: 120 RVSPWANLKGYSLLYDIKTTKATLKIKEGIFYND 153
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 1/222 (0%)
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ + + + ++ K +I + + + + +K+
Sbjct: 241 YSNFNRQSFRHYRMTESLASFGMKRTDEGQFKYHEFMKNISDLTHTADSLRTSYQETKKN 300
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
++ + + T + + + + AS S IK
Sbjct: 301 LVSGSQQYYSYNYREGTDKTIKPGKWIDSLVTRPVSDSLKKEILTNTKAASNSMLSYIKS 360
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
++ + + E + + L + M LI A + + + V I
Sbjct: 361 QQDYLQTKLKDASKYELEKHHKYTQALSCLIMFLIGAPLGAIIKK-GGFGVPVLVSILFF 419
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+LY + + K G++ A + + + + +
Sbjct: 420 ILLYVLTNQGDKWVKEGLVAVPVGAWMANTILFLTGMYFIDR 461
>gi|163782091|ref|ZP_02177090.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882623|gb|EDP76128.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
Length = 357
Score = 58.6 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 72/233 (30%), Gaps = 3/233 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY +LK ++ L+ + L + E ++ G +PL
Sbjct: 1 MNIFDRYLLLNFLKVFSAISFVSVGLIVLYSLTDFLLGFKET---NLEVGLKYTLYLIPL 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + + IV+F ++ GIS + FV +++L + +
Sbjct: 58 GFYILSSLLVNIALIVLFRRFFSKGVDFTVQSFGISPLRFSAVFVGFTLVLSSLFLFLNE 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
K + + +K + + W ++ + + +
Sbjct: 118 SFLPGLFKRVWYIEKTYKKKQEIGRLVERLWFVKKTSFGKYYVYIGSLDVTSGKFAGLFM 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + K+ + + + + + Y +G + ++ ++
Sbjct: 178 LRVSSEGKVKEVVEGKSGRWSGNVIYVDRGSAYNFGEGYFVRELKEFSLSAEI 230
>gi|333029769|ref|ZP_08457830.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
gi|332740366|gb|EGJ70848.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
Length = 632
Score = 58.6 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 56/160 (35%), Gaps = 1/160 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L ++ K + + + + + L + + ++ +
Sbjct: 5 KKLDKFVLKSFGLLFIATFFICLFIFMMQFLWRYVDDLVGK-GLEMTVLGQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P TL+ +++ F N EL+ +A GIS+++++ P ++ ++LL + + N
Sbjct: 64 IPASLPLATLLASLITFGNFGERFELLAMKAAGISLFKIIRPLMILAVLLCGISFVFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
I L+ + + + +
Sbjct: 124 IGPKAFSKLTTLLISIRQKSPELDIPEGIFYDEIDGYNIF 163
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S K+ R ++ I + + I A + R +
Sbjct: 348 SLATDWSFREVEVKNTDLQIRRHLMAWHEKITLSFACLVFFFIGAPLG-SIIRKGGLGMP 406
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + Y I T+ + G + + ++ + + +
Sbjct: 407 VVISVLIFIIYYIINTMGSKMAREGEWIVWIGMWMSTLILAPVGGFLAYK 456
>gi|305432149|ref|ZP_07401315.1| conserved hypothetical integral membrane protein [Campylobacter
coli JV20]
gi|304444814|gb|EFM37461.1| conserved hypothetical integral membrane protein [Campylobacter
coli JV20]
Length = 341
Score = 58.6 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/351 (14%), Positives = 107/351 (30%), Gaps = 21/351 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY +L T L +V ++ ++ + L +P
Sbjct: 1 MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFI-QLAKLTSSIEINFVDLLKLYGFMLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P + + F L+R +E ++ +G S L F+ + L+ +++
Sbjct: 60 ILIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIAL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + +K K + Q + EN I
Sbjct: 120 VMIPIVFELQDNFV-NFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKR 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK+ II ++ + KL Y + +N TL I
Sbjct: 179 NIEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNF------ENGQTLFIGNFDKLIVNTQ 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + + N + + +F + I L +A TL A S + R
Sbjct: 233 FNDQNLQTKKFYEYWNDLNTN-----PKRAKEFVIYVTIALFPLASTLFALSFGIVTYRY 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ I + + + P+ A + L+ SI
Sbjct: 288 EKGFIYFGMFGVIAVYFGLLSSFSQ--------PPILACIGIFALSFIASI 330
>gi|296448501|ref|ZP_06890381.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
gi|296254000|gb|EFH01147.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
Length = 387
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/371 (11%), Positives = 114/371 (30%), Gaps = 22/371 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L+ Y + L + + V + L P
Sbjct: 1 MPRLLFTYLARRILFSMAVVQFALSVPVVLSYLLYTLTPAAIRAGLLAPALIG----TTP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P V + F ++ + + A+ +S+W + P +V + + + +
Sbjct: 57 TVVYITLPMAIGVATALEFARMSSEGMIAVLYALRLSVWSVCRPAIVCAGAMVLIGYGLA 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N IA D+I ++ + + + + N + +++ +
Sbjct: 117 NLIAPHYAGALQDVINVVRNTLNHRMLEPARFYTFDNGLKTLYLERWETPDIAVNLFVRQ 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + I A+ + + ++ + + + + +
Sbjct: 177 LSLAKNQEETITAARAEFRRTPSGVILALSHGSIQTRPFDSTEVRIAGFDEYAMALPMQG 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-----FLIVIPLMLVAMTLIAAS 293
S S + + F ++ R + + +P + A TL+A +
Sbjct: 237 SESLPARSWRGVYEMGPLEFLGNWSVARLDRRLSGEWAAEAAKRFGMPALSFAHTLLAMA 296
Query: 294 VSLEF----SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT-- 347
+ L F R V + + + + + + P A L+ ++
Sbjct: 297 LVLTFGNVTGRRGASSSFVMIAVPATHIFFLV-----ALETLLRADPRYAILLAALICVE 351
Query: 348 ISLSILILLQK 358
I+ + ++ ++
Sbjct: 352 IATAATLISRR 362
>gi|170729351|ref|YP_001774784.1| hypothetical protein Xfasm12_0115 [Xylella fastidiosa M12]
gi|167964144|gb|ACA11154.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 361
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 115/361 (31%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ + L+ M++ L +I + + ++ R
Sbjct: 1 MPK-LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R SE+ + +IG+ ++L + + + + +
Sbjct: 59 SYLPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + DL++Q + + + + + + + +
Sbjct: 119 LWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQS 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + ++L+ N L +
Sbjct: 179 QKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPEL 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S + A+ Q + + PL+ +A L+ +S R
Sbjct: 239 SVVYDSNHPDILPTF-----NLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPR 293
Query: 301 SNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F++Y ++ + + +G + PV + + +++ +
Sbjct: 294 QQRYG-----AVMMCFLVYMVGTNLMIVGTQWIANGKISPVWGLWWLTLPLLLVAVWLYA 348
Query: 357 Q 357
+
Sbjct: 349 R 349
>gi|219685681|ref|ZP_03540495.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
gi|219672797|gb|EED29822.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
Length = 355
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + F K + T L L MIL+ + DL E N + +P
Sbjct: 3 IDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK-NIGFKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ N II K + + I
Sbjct: 122 IDTVARRDLLIKNSIGNSGSIDQTIII-----RDLAREIYNIKSYDINENAFSKLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D D A ++K +L + E+ I +N+ + + + +
Sbjct: 177 DSKDEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ + + L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ + + ++ L+
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLIINFLV 349
>gi|84516313|ref|ZP_01003673.1| Predicted permease [Loktanella vestfoldensis SKA53]
gi|84510009|gb|EAQ06466.1| Predicted permease [Loktanella vestfoldensis SKA53]
Length = 369
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/354 (10%), Positives = 101/354 (28%), Gaps = 7/354 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +F L +++ + + +Q+ S A +P +I+ +P
Sbjct: 1 MLSQLIMLCGFFGLVLVLVYSINRAVLLFDQLI-ADGQSAGVFVEFTALTLPSVIRLALP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
I V + SELV+ +A G S++++ P + +++ + L+++ +
Sbjct: 60 LAAFAAAIYVTNRMTNDSELVVVQATGYSLFRIARPVLYFGLIVALLMSLLMHFLVPRSA 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + + + ++ T D+
Sbjct: 120 AQLALRQTEIARNVTARLLTPGTFTEPIAGVTFYIRDLSPDGELFDLFLSDTRGIEDQVT 179
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R V + +V+ + N+ + + +
Sbjct: 180 YTASRAFLVREAQETQLVMIDGMVQTLRLADQRLFTTRFAEFSYNVGGLLAPVTQAGRRA 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS-VSLEFSRSNQ 303
+ S +E++ R + L+ + LI + + +
Sbjct: 240 SHLSTWELLHPTPALVAETGSSAARMIADGHDRFSQSLLGMVAALIGFATLMVGSYSRFG 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I ++ + T + ++ +P + + +L
Sbjct: 300 VWRQIVAAIALIVVVKALETAGLNAARADA-QLWFLTYLPGAGGLVIVWCLLFW 352
>gi|167856193|ref|ZP_02478930.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
gi|167852682|gb|EDS23959.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
Length = 308
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 8/293 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA G+ L+ + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +++ + K N +M I + + ++++
Sbjct: 61 WLTPWAINKQSEMLAEAKANPRFAALAAGQFMSAGGYVLFIDNIKDNTINDIYVFQPEQQ 120
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + L Y+ D + + G+Q
Sbjct: 121 KKNKPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQDVD 180
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ K +S + A+ + + + + L + M L+A +S R
Sbjct: 181 SDEKLVQRADFQKLLSE-------TSPEAQAELQWRLALILSVPLMALLAVPMSSVNPRQ 233
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + + +KS G SG L + + + L L+
Sbjct: 234 GRFAKLLPALLLYLIYF-LLQSSLKSAGASGKLNVSLLMPMVSVAFLVLGTLL 285
>gi|34498370|ref|NP_902585.1| hypothetical protein CV_2915 [Chromobacterium violaceum ATCC 12472]
gi|34104224|gb|AAQ60583.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 368
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/316 (9%), Positives = 88/316 (27%), Gaps = 8/316 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ + + T L + + ++ + + E + + A++ +
Sbjct: 2 VFQKSLTRELTLTALGVFVVLLAIIVSTQAINLLGRAAEGQIANEAVTALIGFWTL-GFF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V +VV R E+V+ + G+S+ + P + ++ L I V +
Sbjct: 61 PVLMILTVFVSVLVVLTRTWRDHEMVVWLSAGLSLRDWVWPIMRFTLPLAILIAGVTLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSI 182
++ D + K + + + ++ + +
Sbjct: 121 GPWADQRSQDYAEIIKRREEISAISPGVFKESASSSKVYFIENYSGLHSAATNIFMQDMT 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + L+ Y D +
Sbjct: 181 DGKVSTIFAKHGYISIKPDGERVLVLEDGKRYVGEPGQADYQIGEFKRYT-----ASLGD 235
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
A + + S N + + + +P+ + + L+A +S RS
Sbjct: 236 SQAVTGPASNRQSIPTSVLLAGSGNPEYRAELAWRLSMPISCILLALLALPLSYYNPRSG 295
Query: 303 QPRIIVAYGIFSGFML 318
+ + + + F+
Sbjct: 296 HT-YNLLFALLAFFVY 310
>gi|15807417|ref|NP_296150.1| hypothetical protein DR_2430 [Deinococcus radiodurans R1]
gi|6460254|gb|AAF11980.1|AE002073_10 hypothetical protein DR_2430 [Deinococcus radiodurans R1]
Length = 350
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/346 (14%), Positives = 98/346 (28%), Gaps = 11/346 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL R + LK L + L F L+ + + A +P
Sbjct: 3 PSILPRSILREVLKMYGAGLALLLALQFADTLSSTLGKAIAYRATASESATAFLAI-LPT 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I + + ++ L R SEL + A GI L+ P ++ L+G
Sbjct: 62 IFNRALVLSVPFAILLGLSRLQRDSELKAAFAAGIRPLSLVWPLLLPFTLVGALAFWNAG 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +G + +K + + A ++ +
Sbjct: 122 TVVPAGLDRWDKTWYSIFNVPEKIPTRDNY----TYAPPGALYYAGRVTQAPQGQPAPLA 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ +++ ++ L G P + + D +
Sbjct: 178 GVMVQRGGVVYTANSGSWNTAAQSWTLDAPWVTAPGERPRQQAGPV--TLPQGDTLRPPP 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + ++ Q P +A L AA + L
Sbjct: 236 AEAKKVSNAALRTALA-GESLTEQERREYTYQLASRYADPFTPIAFALAAAVLGLLI--- 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+A I Y + M ++G + P AA +P ++
Sbjct: 292 RNQAAALAAVIVFIAGFYVLWITMPQLARAGAVDPTLAAWVPSLIF 337
>gi|237653449|ref|YP_002889763.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
gi|237624696|gb|ACR01386.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
Length = 360
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/357 (10%), Positives = 115/357 (32%), Gaps = 12/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + +T + ++ L + Q L +
Sbjct: 2 IFRRALQREFAQTAAAVFVALFAILISTVLIRLLGQAAG-GRVPPDAVVALIGFGALAQL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + +V R SE+V+ A G+ + + P ++ ++ + + +
Sbjct: 61 PTVLTLTLFIAILVSLSRSYRDSEMVVWFASGVPLTAWIRPVLMFALPVVLVAGGGSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + ++ ++ D + + + ++ Q+ F+ + T
Sbjct: 121 TPWSQQKSAEYRERLENRDDTHRVAPGVFRESASAQRVFFVEVGAGEDGRVRNVFVSEQT 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +I + L + + L+K Y + + ++ +
Sbjct: 181 RSGQLVVIASAEGYLRGDADGRRFVVLEKGRRYDGTPGTPEYRVMEFDRYEVQVEQKQVA 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
Q A ++ + +P + + + L+A +S R+
Sbjct: 241 GQQARIRALPTAVLLAQPEPRGLGELV-------GRFGVPAVALLLALMAIPLSFVNPRA 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ ++ + I + +S+ G L VA L+P ++ +++ + ++ K
Sbjct: 294 GRANNLLVALLVYLLYSNAIS-VFQSWVAQGKLPFVAGLLLPHVVVLAV-LALMFHK 348
>gi|315638229|ref|ZP_07893411.1| integral membrane protein [Campylobacter upsaliensis JV21]
gi|315481765|gb|EFU72387.1| integral membrane protein [Campylobacter upsaliensis JV21]
Length = 350
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/343 (10%), Positives = 92/343 (26%), Gaps = 8/343 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I + + YLK + IDL + S + +
Sbjct: 1 MSIFFHFISSIYLKNFFILFFALVGFYCGIDLLLNFKDLP----ASANLILLYVLFVGFS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + ++ F + R +E V A+G+S +++ + ++L V +
Sbjct: 57 AVTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYVGLNF 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + NG K +++ + + + + E I+
Sbjct: 117 TSFAY----ANEYKRSILKNGVLNKKSSDIFLKFNEEFVYVKSLDEGVAKELKIFSLKDG 172
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + +N L S
Sbjct: 173 NLSHLIQAKRALFNENSWLLEEGNITYIPKEFALGENGYKSENFANLETLEGFKPKLAKS 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S + + Y LI P + LI +R
Sbjct: 233 VASGKEYSIYDAYQSLILFDSQGLNTRNVKITIYKLIFAPFFAPFLMLIMYYYFPVIARF 292
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ +++ + + ++G++ ++P
Sbjct: 293 FNLAFVAFVAFVVTLVVWGGLFVFLRLSENGVISGEFGIILPN 335
>gi|78049236|ref|YP_365411.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325925501|ref|ZP_08186892.1| putative permease [Xanthomonas perforans 91-118]
gi|78037666|emb|CAJ25411.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544093|gb|EGD15485.1| putative permease [Xanthomonas perforans 91-118]
Length = 360
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRVHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|325300373|ref|YP_004260290.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
gi|324319926|gb|ADY37817.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
Length = 636
Score = 58.2 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 78/237 (32%), Gaps = 1/237 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + L +++ I+ A +
Sbjct: 5 KKLDIFILKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGK-GLEINILAQFFFYSGLTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ LG+ + + N
Sbjct: 64 IPISLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMCPVILFCAFLGLMSFIFQNE 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I +K L+ K + + + + +
Sbjct: 124 IGPRAQKKLWTLLVSMKQKSPEVDIPEGVFYSEIDGYNIYVKHKDRETGMLKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ II ++ L + + K + + ++ + N+P + + F++
Sbjct: 184 DGFENAHIIWAEEGKLEMTADKKHLYLHLYNGEQFENLKSQSVISRNVPYRRESFKE 240
Score = 42.8 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 1/143 (0%)
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ I+ +S ++ + + S + SF K + + +
Sbjct: 313 KLNVAYINTDSIFNSMTSQEKSSTLSKTENRVSSLLSECEMKSFLTKDTDRNILSHRSDW 372
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ I + L + I A + R + V + + Y I + GKSG +
Sbjct: 373 HKKITLSLACLIFFFIGAPLGA-IIRKGGLGMPVVISVVIFVIYYIIDSGATRVGKSGEM 431
Query: 335 LPVAAALIPVILTISLSILILLQ 357
+ ++ L +
Sbjct: 432 NVALGTWMSTLVLAPLGAFFTYK 454
>gi|294664573|ref|ZP_06729915.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605657|gb|EFF48966.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 360
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRVHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|32473921|ref|NP_866915.1| permease [Rhodopirellula baltica SH 1]
gi|32444458|emb|CAD74456.1| conserved hypothetical protein-putative permease [Rhodopirellula
baltica SH 1]
gi|327542994|gb|EGF29442.1| permease YjgP/YjgQ family protein [Rhodopirellula baltica WH47]
Length = 398
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/397 (11%), Positives = 116/397 (29%), Gaps = 46/397 (11%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L R L+ + L+ +L+ +I + + L +P+
Sbjct: 3 PTRLTRTILFEILRIFVVALVVLTLLILLIAVGRELFR----KGLGAMAVLQLLPFAIPI 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q +P L V+ + E+ +A GIS +LL P +V + LL V +
Sbjct: 59 SLQHAVPATALFSVCCVYGRMAADGEISTVKASGISPLRLLQPAIVFAALLSPVAVYCSD 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI---GAKKILPENHIWED 178
+ G+ ++ ++ + + + G + I P +
Sbjct: 119 MAVSWGKPGVKRVVLLSIEDIAYRLLERDHSYTSDHGFSIHVREIDGRRMISPRVTVRGK 178
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ D + + V + + ++ + I ++
Sbjct: 179 GDDAFTVTASEGQLMMDEESLSLVLKLVDSQVIRGKGLQGDFYGEHQFEIPIGNALEETD 238
Query: 239 KFSEQFASRSFYEIIKK--------------------------------------MSFSN 260
+ + I + + S
Sbjct: 239 VSTRSPSELPLRLIRNERLRQRERTHAKIGELAAFTGFSLLTSRPAEIGGEKSSAIQSSL 298
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+S+ R +T+ + L+ A +++ S+ + + + Y
Sbjct: 299 QSSRHRLTRLQTEPWRRWAEGFTCFFFVLVGAPLAIVAKTSDYWTTFGMCFLPTILVYYP 358
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K+G + P I ++ + ++++ +
Sbjct: 359 LYLLGLDQAKAGDMPPY-GVWIGNVVLSGVGMMLIAR 394
>gi|21244280|ref|NP_643862.1| hypothetical protein XAC3555 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109928|gb|AAM38398.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 360
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAKAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRVHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|255012652|ref|ZP_05284778.1| hypothetical protein B2_02000 [Bacteroides sp. 2_1_7]
Length = 641
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/259 (11%), Positives = 75/259 (28%), Gaps = 2/259 (0%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +L L + +V + L + M I A + ++ +P
Sbjct: 1 MLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGK-GLGIPVLAEMFMYAALFLVPMALP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N + +
Sbjct: 60 LAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQ 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ + + + + +
Sbjct: 120 VKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNA 179
Query: 189 KIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
++I L + + L + + + +TT + FS +
Sbjct: 180 RVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFSSKDILI 239
Query: 248 SFYEIIKKMSFSNKSNIFH 266
F + S N +
Sbjct: 240 EFDANFNRTDESFMQNQYM 258
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ R T+++ + + I A + R + V + Y I +
Sbjct: 371 YKVRRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNM 429
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + ++ + I + +
Sbjct: 430 GFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 462
>gi|294674577|ref|YP_003575193.1| hypothetical protein PRU_1912 [Prevotella ruminicola 23]
gi|294473775|gb|ADE83164.1| putative membrane protein [Prevotella ruminicola 23]
Length = 662
Score = 57.8 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 5/282 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + K + + ++ + L +++ S+ A
Sbjct: 1 MFRIKKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYVDELIGK-GLSLEVMAQFFWYM 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q P L+ +++ F NL +SEL +A GIS+ Q ++ S+L+ +
Sbjct: 60 GLMLMPQAFPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIIISVLMAGISFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + + L+ K + + + +
Sbjct: 120 FQNVVGPRANQDFYRLLLGMKQKSPELEIPEGVFYDGIPGSNIYVQKKDLNTGMLYGIMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + II + K L + Y ++ +
Sbjct: 180 YRMTGSYEDQAIILADSGMMQSTAEKKHLL--LTLYNGVWNENMRSQDLAGTADVPYRRE 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
F + F ++ + + +
Sbjct: 238 TFVTKRIVLDFDNNFSMADINDIAGDARAKSLGKIMHDKDSL 279
Score = 43.1 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 9/97 (9%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
S + + Q + L + I A + R + V + + Y
Sbjct: 361 NSLHRYFRTHQIQAILKFTLALTCIIFFFIGAPLGA-IIRKGGLGVPVIISVLVFIVYYI 419
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + I ++ ++ +
Sbjct: 420 LDSTGQKMARDDQWTVWYGMTISTVVLAPIACFFTYK 456
Score = 35.8 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 13/236 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF + ++ L F L ++F + VP+II
Sbjct: 363 LHRYFRTHQIQAILKFTLALTCIIFFF------------IGAPLGAIIRKGGLGVPVIIS 410
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ FI + + R + + + IS L + +V+ +
Sbjct: 411 -VLVFIVYYILDSTGQKMARDDQWTVWYGMTISTVVLAPIACFFTYKANNDSVVFNIDMY 469
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ L + + + S I K+ E+ + I +
Sbjct: 470 KQVFMRILGLRTHRHIYRKEVIIEDPIYALDSYHLLQISEQIKQYSEEHKLLHLPNPIHV 529
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + + + L + Q + + +
Sbjct: 530 FFRPGDDQTIEKIVGQLEDVIDDLANTKDAQILGYLNHYPVVATHAHTRPFRRKWL 585
>gi|150002748|ref|YP_001297492.1| hypothetical protein BVU_0142 [Bacteroides vulgatus ATCC 8482]
gi|149931172|gb|ABR37870.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 632
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 74/248 (29%), Gaps = 4/248 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ L + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + L+ K + + + +
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + + + + + + G + S T++ + F E
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLY---LHLYNGEQFENLKSQTISSNNVPYRRETFRE 240
Query: 243 QFASRSFY 250
+ F
Sbjct: 241 KHTIIEFD 248
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
S+ + + E ++ I + L + I A + R + V
Sbjct: 346 LASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPV 404
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + Y I + KSG + V + I+ + +
Sbjct: 405 VVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 453
>gi|254882243|ref|ZP_05254953.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643195|ref|ZP_07997823.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
gi|254835036|gb|EET15345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317385099|gb|EFV66050.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
Length = 632
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 74/248 (29%), Gaps = 4/248 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ L + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + L+ K + + + +
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + + + + + + G + S T++ + F E
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLY---LHLYNGEQFENLKSQTISSNNVPYRRETFRE 240
Query: 243 QFASRSFY 250
+ F
Sbjct: 241 KHTIIEFD 248
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
S+ + + E ++ I + L + I A + R + V
Sbjct: 346 LASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPV 404
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + Y I + KSG + V + I+ + +
Sbjct: 405 VVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 453
>gi|228470134|ref|ZP_04055043.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
gi|228308272|gb|EEK17127.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
Length = 683
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/148 (10%), Positives = 41/148 (27%), Gaps = 2/148 (1%)
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
V Y T ++ D + + +++ + + +YR
Sbjct: 362 VSGYSDAAPTHYTLDTLMDRASDQDKLMGYKQALEWLDNLSSSVQIADTYYDDAASDYRV 421
Query: 271 E-TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + P+ + + A + R + + + Y I T
Sbjct: 422 NAQEMHRKFTFPVACLLFFFVGAPLGA-IVRKGGVGTPMVLAVLIFIIYYVIDTFGLKMI 480
Query: 330 KSGILLPVAAALIPVILTISLSILILLQ 357
SG + A + + + L + +
Sbjct: 481 NSGQIPVWAGMWLSSAVILPLGAFLTYK 508
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/153 (11%), Positives = 57/153 (37%), Gaps = 1/153 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I++ + + +L L +L +V + L + + + + +
Sbjct: 10 PKIMYIFMVRSFLPLLLMTILICWFVVLMQFLWQHIDDLVGK-GMDVGVLLEVIFYAGLY 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F NL EL+ ++ G+ + +++ P V+ + + + ++
Sbjct: 69 VLPTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLD 128
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
++ + + + +
Sbjct: 129 RGVQKASVRVYQILFSARYARPELELPKGIFFN 161
>gi|157164267|ref|YP_001466583.1| ribonuclease PH [Campylobacter concisus 13826]
gi|112800701|gb|EAT98045.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
Length = 342
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/349 (11%), Positives = 111/349 (31%), Gaps = 20/349 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y +L T +++ ++ ++ S L + +P ++
Sbjct: 5 NKYLLFNFLGTFASLFSTLFLIMSIVFFI-QIARITSYIEISFGELFKLYSFMLPRVLLF 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P V + F L++ +E ++ +G S ++ F+ S +L +++ +
Sbjct: 64 VVPIAFFVSLAMTLFRLSKENESIVIFTLGGSPNKIARFFLAFSAILSAALLVIAIVMIP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ + I + + +++G++ ++D
Sbjct: 124 IAAQLNANFI--DYKKTVAKLNLKPTQFGQKFSDWMVYVGSESEDKNGTTYKDIVMFNPF 181
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
K+ K+ V + + K + F+ + A
Sbjct: 182 VKDSQRLI--------TAKNAKITNVNQSIELSLNEGKMYDIKDEIYHQSNFKSMKIRTA 233
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + + + + F +++ L +A TL A S+ + R +
Sbjct: 234 QSEEISDVGSIKE-YWMEAASSNKRKKDFSTYVLVALFPLASTLFAISLGIVTYRYEK-G 291
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ F +T+I + S P A + + + +L+
Sbjct: 292 MVYVGTFGVLFGYFTLIMLFSS-------KPALAIPLIFFVFLIAGVLL 333
>gi|294776418|ref|ZP_06741896.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|294449744|gb|EFG18266.1| putative membrane protein [Bacteroides vulgatus PC510]
Length = 640
Score = 57.8 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 74/248 (29%), Gaps = 4/248 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 13 KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVLAQFFFYSALTL 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ L + N
Sbjct: 72 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 131
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + L+ K + + + +
Sbjct: 132 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 191
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + + + + + + G + S T++ + F E
Sbjct: 192 DGFENAHIIWASEGKMEMTADKQHLY---LHLYNGEQFENLKSQTISSNNVPYRRETFRE 248
Query: 243 QFASRSFY 250
+ F
Sbjct: 249 KHTIIEFD 256
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
S+ + + E ++ I + L + I A + R + V
Sbjct: 354 LASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPV 412
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + Y I + KSG + V + I+ + +
Sbjct: 413 VVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 461
>gi|300778309|ref|ZP_07088167.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
35910]
gi|300503819|gb|EFK34959.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
35910]
Length = 485
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 79/273 (28%), Gaps = 1/273 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY K + + + V + Q S + L
Sbjct: 1 MLKILDRYIIKTFFGPFFFIFSVLFFIFIVNIIWVQLGQFMGK-GLSYWQILKLLFYLGV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I ++P L+ +I+ F EL +A GI + +++ P + S L I
Sbjct: 60 NVISMVLPLTILLASIMSFGEFGERYELAAMKAAGIPLTRVMTPLLGISTALAIMLFFFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I +K +++ ++ F EN
Sbjct: 120 NNIIPDFQKKAKNMLFNIAQTKPAINFTPGQFIDQIPGYMVKFDKIYGENGENIEGVFVH 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+N+ + + +K LK V+ Y + D KF
Sbjct: 180 KKANAYENQQSVVAEKGKFVPAANKNYLKLVLYNGYVFEDAFAGKGDNVRQKQPDQAIKF 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+ EII K + + ++ Q
Sbjct: 240 DTLVSHFDISEIINKAIEKEQITDDYRFQTYNQ 272
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/357 (10%), Positives = 92/357 (25%), Gaps = 11/357 (3%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQII 67
+ L ++ N I + + A A P I
Sbjct: 97 LTRVMTPLLGISTAL-AIMLFFFSNNIIPDFQKKAKNMLFNIAQTKPAINFTPGQFIDQI 155
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI------FTVLVIN 121
P + + + N + + + Q G + +
Sbjct: 156 PGYMVKFDKIYGENGENIEGVFVHKKANAYENQQSVVAEKGKFVPAANKNYLKLVLYNGY 215
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ Q+ D K + + + + I +
Sbjct: 216 VFEDAFAGKGDNVRQKQPDQAIKFDTLVSHFDISEIINKAIEKEQITDDYRFQTYNQLDG 275
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K D + + N + ++ K L+ +
Sbjct: 276 TITKTKKDNKQFFDNIGSEVLNQTNSVITYMDKGNKHKVAPKTQIKLDTVKGEKKLEIIY 335
Query: 242 EQFASR-SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + ++ SN+ + + ++ + + LI +S+ R
Sbjct: 336 NSYNRLDNLKSTLESKKNEYSSNVKYFSKVVIYQQRIVAYSVTCIIFFLIGSSLG-SIIR 394
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ V I + Y + +++ SG + P AA +P ++ + + + +
Sbjct: 395 KGGMGLPVIIAIVIFIIFYVMNVGVENMSWSGKMNPYLAAWLPNLILLPFGVWMTYK 451
>gi|260910242|ref|ZP_05916919.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635746|gb|EEX53759.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 630
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 1/221 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + L + ++ + L +++ ++ A ++
Sbjct: 5 KKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGK-GLTMEVLAQFFWWMALMM 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL+ +SEL ++ GIS+ + + VV L+ + + + N
Sbjct: 64 VPQALPLAILLSSLITFGNLSESSELTAIKSAGISLTRTFSSLVVVCSLISVTSFVFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L+ K + + + + +
Sbjct: 124 IGPYSTIKLSQLLISMKQKSPELGIPEGVFYDGIPNSNIYVQKKDNQTGKFYGIMIYRMS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ ++II L K L + ++ +
Sbjct: 184 NSYEDSEIILADSGMLQTTAERKHLLLTLWNGEWFSNQSQE 224
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 43/362 (11%), Positives = 103/362 (28%), Gaps = 23/362 (6%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L T L+ L+ V N +G +S+ + + P + IP
Sbjct: 99 LTRTFSSLVVVCSLISVTSFVFQ-NNIGPYSTIKLSQLLISMKQKSPELG---IPEGVFY 154
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG--------------IFTVLV 119
I + + + GI I+++ N + I+L + T+
Sbjct: 155 DGIPNSNIYVQKKDNQTGKFYGIMIYRMSNSYEDSEIILADSGMLQTTAERKHLLLTLWN 214
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +++G + ++ +K +I + N
Sbjct: 215 GEWFSNQSQEVGKNAAAPFRRETFLEKKTLIDFNGDFNMTDAELFSGDARGKGLAKLYHD 274
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ I ++ Y + + K K + +++G K
Sbjct: 275 LDSLQHNNDSIGRVFYNEVQASYYNASNMTKADSTAAMAEAKTKAFNVDSAFARLNGDGK 334
Query: 240 FSEQFASRS----FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+RS ++ + + + + + Y ++ L + I A +
Sbjct: 335 RGVLSMARSQVEAVSADMEFKAMVTEDANRMIRQHKIEMYKKFLVSLSCLIFFFIGAPLG 394
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I V + + Y + + GI L+ ++ L++ +
Sbjct: 395 -TIIRKGGLGIPVIVSVLVFIVYYILDNTGYQMARRGIWDVWFGELLATMVLTPLAVFVT 453
Query: 356 LQ 357
+
Sbjct: 454 YK 455
>gi|71901308|ref|ZP_00683405.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71728928|gb|EAO31062.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 408
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 116/361 (32%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ + L+ M++ L +I + + ++ R
Sbjct: 48 MPK-LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFI 105
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R SE+ + +IG+ ++L + ++ + + +
Sbjct: 106 SYLPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLALPVVVLIGVCS 165
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + DL++Q + + + + + + + +
Sbjct: 166 LWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQS 225
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + ++L+ N L +
Sbjct: 226 QKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPTDGAALNYRVLTFARNDALLPEL 285
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S + A+ Q + + PL+ +A L+ +S R
Sbjct: 286 SVVYDSNHPDILPTF-----NLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPR 340
Query: 301 SNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F++Y ++ + + +G + PV + + +++ +
Sbjct: 341 QQRYG-----AVMMCFLVYMVGTNLMIVGTQWIANGKISPVWGLWWLTLPLLLVAVWLYA 395
Query: 357 Q 357
+
Sbjct: 396 R 396
>gi|93004884|ref|YP_579321.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
gi|92392562|gb|ABE73837.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
Length = 428
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 1/151 (0%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
TT L ++++ L + N I + +P ++ I+P
Sbjct: 4 QVASTTALVLGFLVVMMLGGRLIRYFG-IAAEGNLDIGLLFTIIGYNLPYFLELILPLAF 62
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+ ++VF L E+ + A G+S +L + L + + G +
Sbjct: 63 FIALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSS 122
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
++ QQ ++ N +
Sbjct: 123 ENVWQQQALTSAFDLIRPNQFISSGNYHLYV 153
>gi|32491206|ref|NP_871460.1| hypothetical protein WGLp457 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166413|dbj|BAC24603.1| yjgQ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 352
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 105/339 (30%), Gaps = 8/339 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY KTT+ L + + +I +E + + SI VP
Sbjct: 1 MLFILDRYIRSLIFKTTIVALFILLTISGIIKFSEKIQSI-DNSYISIFYLISTILLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I++ L+ + L + EL+I + GIS ++ + I+ +++
Sbjct: 60 KDIEEFFNISILIGILWSIGILEKNRELIIIESSGISRIKICILIIKTIIIFLFIYSIIL 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I +KI + K I I + F + I +
Sbjct: 120 EWIIPIEKKIKSKYFFNFISENKKNLWIKINNNFILIKKIVDFDFIQGIYIYEFNKFNEI 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K I K+ + + K K + I
Sbjct: 180 KYIKSSKYAIFKNKEWIMFDVKTIKFNNNK------KIEINSFDKQIYTNIITPKEINLI 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S E+ + F K+N+++ + + I P+ ++ +T+I +
Sbjct: 234 LFPTEELSISELYFYIKFLKKNNLYYKKQYLVF-WNKIFSPISILIITIIILQLLFGILY 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
S +I V + I GF+ Y I I S
Sbjct: 293 SYDIKIKVVFVISLGFIFYFINNIFNSLIMIYDYPEYFG 331
>gi|288800724|ref|ZP_06406181.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
gi|288332185|gb|EFC70666.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
Length = 636
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/277 (14%), Positives = 86/277 (31%), Gaps = 5/277 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L + K + + ++ + L + + +I A
Sbjct: 1 MFRIKKLDIFIVKQFGLLFIGTFFICQFVLMMQFLWRYIDDLIGK-GLTIDVLAQFFWYM 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+++ Q +P L+ +++ + NL +SEL +A GIS+ Q +V +IL+ +
Sbjct: 60 GLMLVPQALPLAILLSSLIAYGNLGESSELTAIKAAGISLMQSCRGLIVITILIAFSSFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N I + LI +D + + + + + +
Sbjct: 120 FQNNIGPTANLKLAQLILSMRDKSPETQIPVGVFYDGIPNSNIYVQKKDNETGKLYGIMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + II L + K L + ++ + T N +
Sbjct: 180 YRMTGSYEDQAIILADSGMLQSTADRKHLLLSLWSGEWFENMQSQEFT--NTAAVPYRRE 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
F ++ F + S S + ++
Sbjct: 238 TFVDKKILIPFDDGFNLTDASLLSGSAKSKSMGAIWH 274
Score = 43.5 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 15/192 (7%), Positives = 45/192 (23%), Gaps = 2/192 (1%)
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
I + + K + + + + + ++ +
Sbjct: 269 MGAIWHSLDSLNHYYDSVGNVNFKELSYLYNPVQVKTSRDSLRLETKRASLKQMFDVETD 328
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ + R E+ S + Y I + L +
Sbjct: 329 YNKLSSSQKQQVVSSALANIQRDISEL-DYRSMLTVDGDVAIRFHWIEAYNKITLALSCL 387
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
I A + R I + + Y + + GI + ++
Sbjct: 388 LFFFIGAPLGA-IIRKGGLGIPIIVSVLVFITYYILDNSGYRMAREGIWAIWFGKTLAMV 446
Query: 346 LTISLSILILLQ 357
+ +++ + +
Sbjct: 447 ILTPIAVFVTYK 458
>gi|120436531|ref|YP_862217.1| permease [Gramella forsetii KT0803]
gi|117578681|emb|CAL67150.1| permease [Gramella forsetii KT0803]
Length = 459
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
K N+ + E + + + + + + A + R + + I
Sbjct: 326 KQEFKRNVQQVNKFEIALHEKYALSIACIVLFFVGAPLGA-IIRKGGIGLPIVVAILLFL 384
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ I K+ + G + A + + + L I + +
Sbjct: 385 TYHFIGIFAKNSAEDGSVPAFVATWLSTFIMLPLGIYLTYR 425
>gi|212690931|ref|ZP_03299059.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
gi|237712585|ref|ZP_04543066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726895|ref|ZP_04557376.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752264|ref|ZP_06088057.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666163|gb|EEB26735.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
gi|229435421|gb|EEO45498.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229453906|gb|EEO59627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237056|gb|EEZ22526.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 632
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/248 (12%), Positives = 74/248 (29%), Gaps = 4/248 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + + L +++ +S A +
Sbjct: 5 KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ L + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + L+ K + + + +
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + + + + + + G + S T++ + F E
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLY---LHLYNGEQFENLKSQTISSNNVPYRRETFRE 240
Query: 243 QFASRSFY 250
+ F
Sbjct: 241 KHTIIEFD 248
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S S+ + + E ++ I + + + I A + R +
Sbjct: 345 SLASEWNMKSYQTTDADNNIRKHEADWHKKITLSISCLIFFFIGAPLGA-IIRKGGLGMP 403
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + Y I + KSG + V + I+ + +
Sbjct: 404 VVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 453
>gi|254456522|ref|ZP_05069951.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083524|gb|EDZ60950.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
HTCC7211]
Length = 362
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 109/356 (30%), Gaps = 15/356 (4%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ L L+ A I+++V + M E S S + P II ++ PFI
Sbjct: 1 MSFFLIALISAGIVIWVFQAVNFLDIMIE-DGRSYSVYISYSLLNFPKIINKLFPFILFF 59
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
V +EL+I GI+ QL+N S++L + ++ I + +
Sbjct: 60 SLFYVTIKYENNNELIIFWNFGINKIQLINFIFKFSVILMLIQLIFSAIIVPKSQDLARS 119
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
++ N + + +++ + + +
Sbjct: 120 FLRSSTVNFYENFIKPKRFNDTIKNVTIFSERKDIDGNLYNLYLKKEINENNFQITYAKK 179
Query: 194 KDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
V + + + I ++ S Y
Sbjct: 180 GYFKEFNNLPVLVLFNGETITSKNNEITNFSFSKSDFPINNTETNSFVTQQKTQELSSYN 239
Query: 252 IIKKMSFSNKS------------NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++K + F + + + + Y +IP+ ++ +TLI V++
Sbjct: 240 LLKCVKFLIPTKKNKLDPKIINCSERNKDNIFKELYKRFIIPIYILVLTLIPLLVTILSK 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ + G I+ ++ +L+P I I+L ++ L
Sbjct: 300 EDSKYSRLKFIAFLIGLFFIIFSETTIRLISDSIIKNISISLLPFIFIITLYLIFL 355
>gi|294625211|ref|ZP_06703852.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600485|gb|EFF44581.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 360
Score = 57.4 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTADAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRVHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW--TYA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|288929933|ref|ZP_06423775.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
gi|288328752|gb|EFC67341.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
Length = 630
Score = 57.4 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 1/221 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + L + ++ + L +++ +I A ++
Sbjct: 5 KKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGK-GLTIEVLAQFFWWMGLMM 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL ++ GIS+ + + VV S + + + N
Sbjct: 64 VPQALPLAILLSSLITFGNLGESSELTAIKSAGISLTRTFSSLVVVSCFISATSFVFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L+ K + + + + + +
Sbjct: 124 IGPYSTIKLSQLLVSMKQKNPELEIPEGVFYDGIPNSNIYVQKKDVKTGKFYGIMIYRMS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ ++II L + L + ++ +
Sbjct: 184 NSYEDSEIILADSGMLQTTAEKQHLLLTLWNGEWFSNQAQE 224
Score = 47.0 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + + Y V+ L + I A + R I V + + Y +
Sbjct: 363 NRMIRQHKIEMYKKFVLSLSCLIFFFIGAPLG-TIIRKGGLGIPVIVSVLVFIVYYILDN 421
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ GI L+ ++ + L++ + +
Sbjct: 422 SGYQMARRGIWAIWFGELLATMVLVPLAVFVTYK 455
>gi|294645356|ref|ZP_06723067.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|292639294|gb|EFF57601.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
Length = 616
Score = 57.4 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 338 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 396
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L I + +
Sbjct: 397 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 439
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 4/241 (1%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ + + + L +++ +S A ++ +P L+ ++
Sbjct: 3 FIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTLVPVSLPLAVLLASL 61
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 62 ITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLIL 121
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
K + + D + K + + D ++ + A
Sbjct: 122 SMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARIIYA 178
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
D + K + G + + + ++ ++F E+ F +
Sbjct: 179 DSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEFNSDFNMV 238
Query: 257 S 257
Sbjct: 239 D 239
>gi|299141277|ref|ZP_07034414.1| permease [Prevotella oris C735]
gi|298577237|gb|EFI49106.1| permease [Prevotella oris C735]
Length = 632
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 1/220 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L + + S+ A ++
Sbjct: 5 KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGK-GLSMEIMAKFFWYMGLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q +V ++ + + + N
Sbjct: 64 VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L+ K + + + + + +
Sbjct: 124 IGPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQHKDLKTGKLYGIMIYRMT 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
+ II L K + + ++
Sbjct: 184 GSYEDQAIILADSGMLQSTAEKKHLMLSLWSGEWFENMQT 223
Score = 43.1 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E + + L + I A + R I V + + Y +
Sbjct: 361 GDRIIRQHEIEAISKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIISVLVFIVYYILD 419
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+SGI + + L+I + +
Sbjct: 420 NSGYRMSRSGIWTVWFGKGLAPAILTPLAIFVTYK 454
>gi|198283963|ref|YP_002220284.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198248484|gb|ACH84077.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 368
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 107/351 (30%), Gaps = 2/351 (0%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ + L L + ++ + L ++ Q+ +S L +P ++ ++P
Sbjct: 3 VVRNLTISFLLTSLVVLAILAIGQLTQLLRQVAS-GQLPLSIILRLLGLALPTLLVMVLP 61
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+VF NL R++E+V R+ G + LL P V + + +++ A +
Sbjct: 62 LAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQ 121
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + + + + + + K +
Sbjct: 122 RELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVAQGGQLD 181
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ A + L Y + + Q
Sbjct: 182 MATAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDTGGAEPGG 241
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + + A ++ + ++ PL L + L+A ++ R
Sbjct: 242 INWSSASLPQLVRQLHGTGMRFAVSELEWRLLWPLALPLLALLAIPLAYSEPRGGGRAAG 301
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ GI + I+ +K +G + L ++L ++++ ++
Sbjct: 302 MLVGILFLLAVNNIVVYVKEHMMNGSMPIFPGLLWVLLLILAVAAYAFFRR 352
>gi|281423648|ref|ZP_06254561.1| putative permease [Prevotella oris F0302]
gi|281402200|gb|EFB33031.1| putative permease [Prevotella oris F0302]
Length = 637
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 1/163 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L + + S+ A ++
Sbjct: 10 KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGK-GLSMEIMAKFFWYMGLML 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q +V ++ + + + N
Sbjct: 69 VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNN 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
I L+ K + + +
Sbjct: 129 IGPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQH 171
Score = 43.1 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ E + + L + I A + R I V + + Y +
Sbjct: 366 GDRIIRQHEIEAISKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIISVLVFIVYYILD 424
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+SGI + + L+I + +
Sbjct: 425 NSGYRMSRSGIWTVWFGKGLAPAILTPLAIFVTYK 459
>gi|51599060|ref|YP_073248.1| hypothetical protein BG0834 [Borrelia garinii PBi]
gi|51573631|gb|AAU07656.1| hypothetical protein BG0834 [Borrelia garinii PBi]
Length = 355
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 111/353 (31%), Gaps = 9/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ F K + T L L MIL+ + DL E N + +P
Sbjct: 3 IDMLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK-NIGFKDILYIYYLYLPKAFS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 62 DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
LI+ N II K + + + I
Sbjct: 122 IDTVARRDLLIKNSIGNSRSSDKTIII-----RDLAREIYNIKSYDINENAFSNLMIIIK 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D K++ R D D A ++K +L + E+ I +N+ + + + +
Sbjct: 177 DSKDEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRT 236
Query: 245 ASRSFYEI-IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S + K+ + + L+ + L++ +V +
Sbjct: 237 VMLSSKALNFTKLINWISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKK 296
Query: 304 PRIIVAY--GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I++ I + I I G L A+ I + ++ +
Sbjct: 297 NIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTIFFLIINFFV 349
>gi|325919212|ref|ZP_08181261.1| putative permease [Xanthomonas gardneri ATCC 19865]
gi|325550312|gb|EGD21117.1| putative permease [Xanthomonas gardneri ATCC 19865]
Length = 360
Score = 57.0 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/361 (10%), Positives = 104/361 (28%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPILMLVVPVVVLIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R N ++L+ + + +
Sbjct: 179 QKDDRIDVVTAERGAMFFEGKANRYLRLEDGYRIEGPAAGNTLDYRLMKFASNDVALPDR 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S+ + + + A Q + + PL+ +A L+ +S R
Sbjct: 239 SQVHDANDPEVMWTT-----QLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPR 293
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + + ++ + + +G + ++++I D
Sbjct: 294 QQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAIWA--YARD 350
Query: 361 G 361
G
Sbjct: 351 G 351
>gi|305667079|ref|YP_003863366.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
gi|88708012|gb|EAR00250.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
Length = 482
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
++ R + + L V + + A + R + + I
Sbjct: 352 KKEFENRYEIYNRHIISLHKKYALALSCVILFFVGAPLGA-IIRKGGIGLPMVIAIVLFL 410
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
Y I +++ K + P+ A + ++ + LSI++
Sbjct: 411 TYYFIGVFAENYAKKNEIHPIIGAWLSTMIMLPLSIVL 448
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/229 (12%), Positives = 66/229 (28%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+ +F+ + I +P + ++++P L+ +I+ F L
Sbjct: 1 MFIFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPNLTEKVLPLTVLLSSILTFGTLAEN 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
E +A GIS+ + + +V + LG T N + + E+ +L +
Sbjct: 61 YEFAAMKASGISLQRAMLSLIVFIVFLGGVTFYFANSVIPASEQKIYNLRRNIAKVKPAV 120
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+ +I + K + + K K + ++
Sbjct: 121 AIVEGVFSDFEGADMNIKVDKKHGENDRFLENVTIHQKTKTKVNSTVIKAKSGELKSSET 180
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
+ ++V Y S+ F + E
Sbjct: 181 SDILQLVLYDGHYYRDLPKSSKKAKNKHPFAKADFETYTMNIDLSEFNN 229
>gi|218672884|ref|ZP_03522553.1| putative permease protein [Rhizobium etli GR56]
Length = 380
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 114/308 (37%), Gaps = 12/308 (3%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
L LL + +++ + + N + + SI A LA +P II ++PF ++
Sbjct: 3 FLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSIIPVVLPFALVIAIT 61
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+N SEL + A G L+ P ++ + ++ +F+ V N + + + +I
Sbjct: 62 QTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNIVEPRAKTVARQMIA 121
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ + + + +I + +++ K L + F + D ++I+
Sbjct: 122 ETYADLLSSVIEEKTFRKI---DEGLYVQISKRLAGRMLKGLFVADERDPAYELIYYAKE 178
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ + ++ + +S + ++ + + + + + R + +
Sbjct: 179 GAVDDTGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTENRGQATLKASDRDLWFL 238
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII--VAY 310
++K + + + ++ V L + +++ +RS++ + +
Sbjct: 239 FNP-DPNDKDFTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-GDARSHREARLHPMVS 296
Query: 311 GIFSGFML 318
+ F
Sbjct: 297 ALAYAFAF 304
>gi|218665831|ref|YP_002426599.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518044|gb|ACK78630.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 373
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 107/351 (30%), Gaps = 2/351 (0%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ + L L + ++ + L ++ Q+ +S L +P ++ ++P
Sbjct: 8 VVRNLTISFLLTSLVVLAILAIGQLTQLLRQVAS-GQLPLSIILRLLGLALPTLLVMVLP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+VF NL R++E+V R+ G + LL P V + + +++ A +
Sbjct: 67 LAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQ 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + + + + + + K +
Sbjct: 127 RELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVAQGGQLD 186
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ A + L Y + + Q
Sbjct: 187 MATAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDTGGAEPGG 246
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + + A ++ + ++ PL L + L+A ++ R
Sbjct: 247 INWSSASLPQLVRQLHGTGMRFAVSELEWRLLWPLALPLLALLAIPLAYSEPRGGGRAAG 306
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ GI + I+ +K +G + L ++L ++++ ++
Sbjct: 307 MLVGILFLLAVNNIVVYVKEHMMNGSMPIFPGLLWVLLLILAVAAYAFFRR 357
>gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400 [Herminiimonas arsenicoxydans]
gi|133739480|emb|CAL62531.1| putative permease [Herminiimonas arsenicoxydans]
Length = 347
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/312 (10%), Positives = 98/312 (31%), Gaps = 10/312 (3%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
L I Q S L + I+ + ++V + SE+V+
Sbjct: 2 LIRILGQAAGGKVASA-DVVALIGFSALNYLPIILNLAGFMSVLLVVTRSYQDSEMVVWF 60
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
A G+S+ + + P +V ++ + + T L+ + + +++ + D + +
Sbjct: 61 ASGLSLARWIPPVLVFALPIVVMTTLLSLFLTPWSNQQSAIYKERYANREDIARVSPGKF 120
Query: 153 MQISNPQQDIF-IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ S+ + F G + + + ++ + + + +
Sbjct: 121 QESSSSDRVFFVEGVAGDSSKVRNIFVSSVRNGKTSVVVAKEGTVEIDPAGDKFLVMHQG 180
Query: 212 VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
Y D + + Q + + + +++ + + +
Sbjct: 181 RRYDGVPTQSDFQLMEFDRYGVLVASQSQALVGDTSARALTTQELLRNRNN------FND 234
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ + + +PLM V + L+A + R + + +F +++ ++
Sbjct: 235 GELLWRVSLPLMGVLLMLLAIPLGFVNPRGGRSA-NLLIALFLFVFYSNMLSYAQAIVVQ 293
Query: 332 GILLPVAAALIP 343
A P
Sbjct: 294 NR-AAFMMAWWP 304
>gi|289663727|ref|ZP_06485308.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 360
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVVVIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRINVVTADRGAMFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRVHDANDPEVMWTTQLLSDERPTA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|33519519|ref|NP_878351.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
gi|33517182|emb|CAD83564.1| putative inner membrane protein; predicted permease [Candidatus
Blochmannia floridanus]
Length = 370
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 119/351 (33%), Gaps = 3/351 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K K L L+ ++ F ++ N I + +P +
Sbjct: 2 ILIKYIMKEICKNQLIILILLLLACFCQKSIKVL---SLSNNIPIYWIFLYLFLSIPDLG 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ IIPF + ++ + L+ +E++ + ++ + L+ + S ++ I +++ + +
Sbjct: 59 KLIIPFSLFLSVLISCYRLHMHNEILAMYSCAVNKYVLIQSICMYSTVIAILSLINLAYL 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++ + K N + + + + +FI K NH++
Sbjct: 119 APHCEQYKENIFFKMKKNTYFIELIEKKFYLLFDEHLVLFIDNIKNGMLNHVFILKRVQN 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
IDK I D + +++ + + + +
Sbjct: 179 IDKNVFSIITADQGSIHYNFNDKSQLIILQSGMYYEIHNTQLLCIPRFVTYFNQYRTLVH 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ K + N + + + E+ + L + + ++ + + +
Sbjct: 239 DKYQFLRDVNKSVKHMNINQLLISSELESYIELNWRLTLFISVFIMPMIALFVMMNIAYG 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y + ++ + + + I + + + +L+
Sbjct: 299 YLSNFLLAVVLYVFFYMLHIMLYTCSVLNYMNIIILMWIINCIYLIILLLM 349
>gi|295689676|ref|YP_003593369.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295431579|gb|ADG10751.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 380
Score = 57.0 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/286 (10%), Positives = 83/286 (29%), Gaps = 5/286 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L TL + L + + + E S + +P
Sbjct: 1 MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQR-QSAVVFLKIILLALPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V +V L+ E+V+ A G+S W +++P + +++ + +++
Sbjct: 60 LLAIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWAVISPAMRLAVMAALISLISGL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + K + + + + +++
Sbjct: 120 WLQPWSARQIRETAFDIKTDVASTLVQPGQFTEPGPGLTVYAQSINRDNKIQNLFIHQEM 179
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + Q + T ++ +
Sbjct: 180 PNGGASTYSSREAEIATRKGQPVLIMRHGSNQQFSRQGVLQYTSFDEYTFDLSSLFRSDE 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ A R +E+ + + + + + PL
Sbjct: 240 LLHYKIADRYPHELF-FPDMTQDWERQNRDKMLAEGHSRFAGPLYN 284
>gi|89070356|ref|ZP_01157663.1| Predicted permease [Oceanicola granulosus HTCC2516]
gi|89044003|gb|EAR50178.1| Predicted permease [Oceanicola granulosus HTCC2516]
Length = 370
Score = 56.6 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/348 (10%), Positives = 110/348 (31%), Gaps = 13/348 (3%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+F L ++L +V + +Q+ S +A +P II+ ++P + +
Sbjct: 4 FGFFSLVLILLYWVNRAVVLFDQLIS-DGQSALVFLEFSALSLPAIIRIVLPLAAFIAAL 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V L SEL++ ++ G S +L P V +++ + T + + +
Sbjct: 63 YVTNKLTTESELLVVQSTGFSPVRLARPAFVFGLIVTLLTGALTHVLVPVAAAQLGARQD 122
Query: 137 QWKDNGDKQKSDIIPWMQ------ISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+ N + ++ + + + + + I +
Sbjct: 123 EIASNITARFLTPGQFLNPVDGITVYVRDINDAGALQDLFLADTRESGRQVIYTAATAYL 182
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
+ + ++ + + + + + D + + I + + E+
Sbjct: 183 VRSEGGPQLVMVDGLAQTLRGSDQRLYTTRFDDFTYDIGRLIVSEEPGRLRERNVWSGPL 242
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ RAE + + + AA + FSR +
Sbjct: 243 LQASPALQAQIERPAVALRAEVHDRMNKALLGFVGPVLGFAALLIGGFSRFG-VWRQIVV 301
Query: 311 GIFSGFMLYTIITIMKSFGKSG--ILLPVAAALIPVILTISLSILILL 356
+ ++ ++ ++ + + + +P ++ ++++ +
Sbjct: 302 AVVLVVVVTSLESVSSTLVDADPTRWPLL---YMPTLVGLAIASALFW 346
>gi|198276083|ref|ZP_03208614.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
gi|198270895|gb|EDY95165.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
Length = 630
Score = 56.6 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S S+ + + R ++ ++ I + L + I A + R +
Sbjct: 346 SLMSDWSMKSYMTREADNNIRRHQSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMP 404
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + Y I + KSG + + + I+ L + +
Sbjct: 405 VVISVLIFVLYYIIDSGATRVAKSGEMNIILGTWMSTIILAPLGGFLTYK 454
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 1/237 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + L +++ I+ A +
Sbjct: 5 KKLDIFVLKSFLLLFSGTFFICLFIFMMQFLWRYVDELVGK-GLEINVLAQFFFLSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI +++++ P V+ + LG+ + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLFRIIRPVVLFCMFLGVMSFFFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I +K L+ K + + + +
Sbjct: 124 IGPKAQKELWTLLVSMKQKSPEVDIPEGVFYSDIEGYNIYVKKKDRDTGILKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ II ++ L + + K + + ++ + N+P + + F++
Sbjct: 184 DGFENAHIIWAEEGKLELTADKKHLYLHLYNGEQFENLKSQSVISRNVPYRRETFKE 240
>gi|260174364|ref|ZP_05760776.1| hypothetical protein BacD2_21081 [Bacteroides sp. D2]
Length = 616
Score = 56.6 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 338 FKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLV 396
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + + +
Sbjct: 397 FIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFLTYK 439
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 4/241 (1%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ + + + L +++ +S A ++ +P L+ ++
Sbjct: 3 FIGTFFICLFIFMMQFLWRYVDELVGK-GLEMSVMAQFFFYSALTLVPVSLPLAVLLASL 61
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 62 ITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLIL 121
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
K + + D + K + + D + + H A
Sbjct: 122 SMKQKSPELDIPEGVFYSEIK---DYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHIIYA 178
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
D + K + G + + + +L + F E+ F +
Sbjct: 179 DSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFREKHTIIEFNSDFNMV 238
Query: 257 S 257
Sbjct: 239 D 239
>gi|166713424|ref|ZP_02244631.1| hypothetical protein Xoryp_18795 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 360
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/363 (9%), Positives = 101/363 (27%), Gaps = 14/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVIIGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + ++L + + +
Sbjct: 179 QQNDRIDVVTADRGALFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDR 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +S + Q + + PL+ +A L+ +S
Sbjct: 239 TRLHDGNDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFALLTLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + + ++ + + +G + +++++
Sbjct: 292 PRQQRYG-RIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWA--YA 348
Query: 359 EDG 361
DG
Sbjct: 349 RDG 351
>gi|312129693|ref|YP_003997033.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
17132]
gi|311906239|gb|ADQ16680.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
17132]
Length = 453
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/276 (14%), Positives = 84/276 (30%), Gaps = 2/276 (0%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+ + ++ I ++ + S L+ V +S + ++ N
Sbjct: 176 VYDHNTGSGNKNITVADSGRMYTINKESQLVFELYNGVNYSEGSSYNNMAQMTRYSFQKN 235
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ K I N + DK + I
Sbjct: 236 KIVFLLSSFGLKRSKEEDFTYHEYMKSIPELNEKIDSLNKQIRDKSGQQIIAYKRLDLYA 295
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
+ + V + +D T + + F + +I+ MSF N
Sbjct: 296 FPEMVGDTLSKKGIVAGAWVDSLLTKVEKITSVQEFNSSARTKLESQKSQIVSDMSFLNG 355
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
+ A+ + + + +AM LI AS+ R + V I + Y +
Sbjct: 356 V-EKAVWAADLERWNKVTTGFSCLAMFLIGASLGSIIKR-GGFGMPVLISIAFFILYYLL 413
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K G++ V A +P + I++ L++ +
Sbjct: 414 QQMGNKYAKEGLISAVVGAWMPFSVLITIGALLMRR 449
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 78/280 (27%), Gaps = 5/280 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I + F K Y+ + + + + L + N + A L
Sbjct: 1 MKKI-DKLFVKSYIGPFVLTTAIVVFIFLMRFLMIYFPEFIGK-NLDMMVFAKLFFYFTM 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I +P TL+ ++ F NL SEL ++ GI I +L+ P ++ SI + IF++
Sbjct: 59 MTIPMSLPLATLLATLMCFGNLGEKSELTAMKSAGIPITRLIVPTMILSIFVAIFSIGYN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + G L+ K + + +
Sbjct: 119 NTVNPWANLKGWSLLYDIKTTKPALNIQEGIFYNQIPGYRIKVEKKVGDGQSLKNVIVYD 178
Query: 181 SITIDKKNKIIHRKDADLAIIYND---KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T I + I + +L V Y G + T K
Sbjct: 179 HNTGSGNKNITVADSGRMYTINKESQLVFELYNGVNYSEGSSYNNMAQMTRYSFQKNKIV 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
S RS E + +
Sbjct: 239 FLLSSFGLKRSKEEDFTYHEYMKSIPELNEKIDSLNKQIR 278
>gi|300871686|ref|YP_003786559.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
gi|300689387|gb|ADK32058.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
Length = 431
Score = 56.6 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 3/243 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y + + +L + FVI L ++ I + +P
Sbjct: 1 MKKI-KKYIILEAIGPFIAGVLFFTFI-FVIQLLPELFKLILNNGAPIWTSLEIFVYMLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ I+ + L+ +E+++ RA+G S ++ P ++ +F++
Sbjct: 59 FNVAITIPMSILMAGIMGYGRLSSDNEIIVMRALGFSHMRIYAPIIILGFFTFLFSLFFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH-IWEDF 179
N + T L + + + IS+ I ++ + D
Sbjct: 119 NVVMTESNYRYRALFSYIINIRPSIAVGKLEFAYISDINLSIGAYYSDNNGMSNVVIYDG 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
S + + A + L + + N T+ + ++ +
Sbjct: 179 NSQARRIITAKSGKWKNNEANSKVITLTLYDGIVQEMPVYGFVSNDFTVFDAMDINIVRN 238
Query: 240 FSE 242
S+
Sbjct: 239 VSK 241
Score = 46.6 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 35/318 (11%), Positives = 74/318 (23%), Gaps = 14/318 (4%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ NY P I + F + + + + + I
Sbjct: 121 VMTESNYRYRALFSYIINIRPSIAVGKLEFAYISDINLSIGAYYSDNNGMSNVVIYDGNS 180
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
Q + + + I + L +
Sbjct: 181 QARR--------IITAKSGKWKNNEANSKVITLTLYDGIVQEMPVYGFVSNDFTVFDAMD 232
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+I K+ + + I KK + I
Sbjct: 233 INIVRNVSKLNDHERGLREIPAWEIRKKINTSMNNSLQTLTNQISNMISTAYSNSFITNI 292
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
N N + F S + K ++ F+ I
Sbjct: 293 DGTTNIILTNANVSFSSFSNTYVTTNSAELDRLYKSTKKEAVPYFYYVE-----FHKFIS 347
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
IP + M I A + + RS + + + Y +IT+ + + + A
Sbjct: 348 IPAACLFMVFIGAPLGIVGKRSGR-GFGFGLSVIVVVVYYILITVAEIIAGNRKVPGFVA 406
Query: 340 ALIPVILTISLSILILLQ 357
P I+ + ++++
Sbjct: 407 MWFPNIVLAVIGGFLMIR 424
>gi|257461390|ref|ZP_05626486.1| ribonuclease PH [Campylobacter gracilis RM3268]
gi|257441113|gb|EEV16260.1| ribonuclease PH [Campylobacter gracilis RM3268]
Length = 343
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/319 (10%), Positives = 93/319 (29%), Gaps = 13/319 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F ++ + I++ ++ ++ + S L +P I+
Sbjct: 6 RYLFSNFVGSFASLFSTLFIIMSIVFFL-QIARITSFIEINFSELVKLYLFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V + F L++ +E ++ IG + +++ F + + L + + V +
Sbjct: 65 VPIAFFVALSISLFRLSKENETIVIFTIGYATRKIVLFFGISAALCSLALLFVSLFMMPI 124
Query: 127 GEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + + I ++ + + ++ D + +
Sbjct: 125 AENLKDNFIDYKKISATLNIKSNEFGQKFSDWLVFIDSQENNGTSTLYKDLVLYNPGGSQ 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + I+ R + L Y G +
Sbjct: 185 DHERMIVARSGEFKNENASFSAMLHDGKIYTMGGDQWHVSEFESLTLRTQSDRNIRGGGG 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + ++ R E Y L+ + + + ++ +
Sbjct: 245 V----------IGYWSEMGGSEKRRKEFSIYTLVSLFPLASFLFALSLGIVTYRYEKGFV 294
Query: 305 RIIVAYGIFSGFMLYTIIT 323
+ +FS F L +++
Sbjct: 295 YAGIFGVLFSYFALIMLLS 313
>gi|29840522|ref|NP_829628.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
gi|29834871|gb|AAP05506.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
Length = 357
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 119/352 (33%), Gaps = 10/352 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYLTVLRLTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S + P ++ S +
Sbjct: 58 YLLPFILPVSCFISAFALFRGLSDNNQITFLKASGASQGIITFPILMVSCAICCINFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRFQTCKEIANMAMTSPTLLLQTLQKKENNRIFITVDHCAKSKFDNV-----II 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ DK+ + + + ND V+ + VV + + ++ + ++ +
Sbjct: 173 ALKRDKEIANVGIIKTIIPDVANDTVEARDVVMISKLPSTLTEQHSSNSKEYYIETLDEM 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + M + ++ + + L +++ L+ +++
Sbjct: 233 LIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHAHLPETLRRISIGLLCITLTYSGMV 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISL 350
+ I + + I+ GK+ L +IP ++T +
Sbjct: 293 LGTYKPRFRKSITLYCIFPVMDLILLIVGKNTTTLLPAFMMFIIPQVITWIV 344
>gi|21230125|ref|NP_636042.1| hypothetical protein XCC0650 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769884|ref|YP_244646.1| hypothetical protein XC_3584 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111655|gb|AAM39966.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575216|gb|AAY50626.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 360
Score = 56.2 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/361 (10%), Positives = 105/361 (29%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIGI ++L P + + + +
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + ++L+ + + L D
Sbjct: 179 QKDDRIDVVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLD-YRLMTFASNDVALPD 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + E++ + A + + + PL+ +A L+ +S R
Sbjct: 238 RTKAHDANDPEVMSTFKLIGDA----RPIARAELHRRLAPPLLALAFALLTLPLSRSAPR 293
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + + ++ + + +G + + +++SI D
Sbjct: 294 QQRYG-RIMLAFLAYLVGTNLMIVGTQWIANGKVPGALGLWWLTLPLLAVSIWA--YARD 350
Query: 361 G 361
G
Sbjct: 351 G 351
>gi|34581065|ref|ZP_00142545.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262450|gb|EAA25954.1| unknown [Rickettsia sibirica 246]
Length = 338
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/341 (10%), Positives = 121/341 (35%), Gaps = 11/341 (3%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
+V++ + ++ + + L +P ++ ++P I ++ I ++ NL
Sbjct: 1 MTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLK 58
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+L+I + G++ QL P + ++++ + + + I + K+N
Sbjct: 59 VERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSNILPLSHINLKSRLNFIKNNYI 118
Query: 144 KQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ + + + ++ ++ ++ D S+ + ++
Sbjct: 119 SSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSP 178
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + V + +S + + + ++ + Y I + ++
Sbjct: 179 IFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLA 235
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ I + + + I+ PL + +A +V L + + + +
Sbjct: 236 PPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPYRKKTTFMPVLFSALTVL 295
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
L T I + S L + A +++ +++ + + ++K
Sbjct: 296 LVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 336
>gi|160871958|ref|ZP_02062090.1| permease [Rickettsiella grylli]
gi|159120757|gb|EDP46095.1| permease [Rickettsiella grylli]
Length = 376
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/349 (12%), Positives = 106/349 (30%), Gaps = 4/349 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L + L +++ + NQ+ ++ + L P +
Sbjct: 2 ILFRYLTREVLTSLLLITSLLFLILISNEFVHYLNQVA-YGKFAANILWKLIVLESPRFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF + + + L E+ + A G S+ QL + LL + +
Sbjct: 61 AILLPFSLCLAILFTYGRLYADYEMTVLNACGFSLGQLTRLSLPFIFLLFFIVAGLSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ S L+ Q + Q + Q + + I++ +
Sbjct: 121 SPSLLSYRNKLLTQTGIAIELQTLQPGRFQQTNQGHRIIYVEKVSTDHHTVKNIFLAQTS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ I A + + T + FQ +
Sbjct: 181 PKEASQEITPWTILSAHRGYQTLNPHTKEPFFVAVNGKRYQGTPGQTEYYITAFQNYGIH 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR--- 300
K+ + S+ + + + ++ + L L+ + +++ SR
Sbjct: 241 INLPRTTTHKKQDTLSSMALWNASPPHKACYFSELQWRLSAPLSILLLSLLAIPLSRVNP 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ V I + ++ + + + ++G + L I
Sbjct: 301 RQGKFLHVLPVIGIYIVYLNLLLVGRDWIENGTISYTLGLWPIHGLLIL 349
>gi|163756953|ref|ZP_02164060.1| putative permease [Kordia algicida OT-1]
gi|161323072|gb|EDP94414.1| putative permease [Kordia algicida OT-1]
Length = 639
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 69/238 (28%), Gaps = 10/238 (4%)
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPW-MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
D+ + + + + + I N + + ++ F ++
Sbjct: 190 NRYEDVKSNDPKSVLRMQHAKVSFDKYIMNVDLRDINKVDLDATDYNTYKMFNVKQLNDT 249
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ RK + + D + + + + ++ + + +
Sbjct: 250 IALSERKYGQEKVGFGDNMYKRTGMVIIEKDSTNKVHQDSIIANKSITDILSLKNKKRAL 309
Query: 248 --SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP------LMLVAMTLIAASVSLEFS 299
S I +++ +N + + I + + + + + A +
Sbjct: 310 DISITNIKGRITTLENTNNRFKRIEKKINHQKIYMHDKFAVAIACIILFFVGAPLGA-II 368
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + I + + I K+ + G + P + ++ + LSI +
Sbjct: 369 RKGGIGLPMVVAICLFLVYHFIGIFGKNSAEDGSIPPWLGTWLSTMIMLPLSIYFTRR 426
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 1/140 (0%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + + + ++ P +I ++P LV +I+ F
Sbjct: 1 MCIFILQTVWLFIGELAGK-GLDAGVIFKFLLYTTPKLIPLVLPLSILVSSIMTFGRFAE 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+ E ++ GIS+ + + ++ ++LG+ T N + E +L +
Sbjct: 60 SYEFAAMKSTGISLQRAMRSLIIFIVILGVGTFFFSNSVIPWSEFKQYNLRKNLAKKKPA 119
Query: 145 QKSDIIPWMQISNPQQDIFI 164
+ I N +
Sbjct: 120 LAIGEGVFNDIGNINIKVDN 139
>gi|167752154|ref|ZP_02424281.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
gi|167660395|gb|EDS04525.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
Length = 492
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 43/123 (34%), Gaps = 1/123 (0%)
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
A+R+ + K+ + YR++ +++ + +P+ ++ LI A +
Sbjct: 334 KDRIWSQAVSAARNSRSMFSFDESQAKNALNQLYRSKVEWHKKLALPVTIIIFFLIGAPL 393
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + Y I + + K G + + ++I +
Sbjct: 394 GA-IVRRGGLGMPIVISVIFFVIYYIISSSGEKMAKEGTWEAFYGTWLSAFVLAPVAIYL 452
Query: 355 LLQ 357
+
Sbjct: 453 TYK 455
Score = 52.8 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/279 (9%), Positives = 79/279 (28%), Gaps = 1/279 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+++ K YL + M ++ + L +++ L
Sbjct: 1 MKTIYKLVLKSYLGPMVLTFFIIMFVLMMNVLWRYIDELVGK-GLDPGTIIELLCYATIN 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P TL+ I+ NL EL+ ++ G+S+ +++ P +V +L + + + N
Sbjct: 60 MIPMALPLATLLAAIMTMGNLGENYELLAMKSAGMSLPKIMRPLLVVVSILAVGSFFIAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I + + + + + + +
Sbjct: 120 NLVPYANKKFFRTIYDIRQMNQTLEFQDGLFFNGIDGMSIRVGHQNQETGLLTDVLIYDN 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + + + + ++ + F+
Sbjct: 180 RNASGNMTTTVADSGYIRLSDDKRFLEITLFNGERYEQTRNSSQWYNKSSLQRNKFELQK 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ F N + + + + L
Sbjct: 240 ANISISGFEMQRTDADLFNNAQTKNISELQYEIDTLTQQ 278
>gi|126664027|ref|ZP_01735021.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
gi|126623976|gb|EAZ94670.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
Length = 474
Score = 56.2 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/211 (9%), Positives = 57/211 (27%), Gaps = 4/211 (1%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ T + + + + ++ + + P I+ ++P L+
Sbjct: 1 MITFTTVFVILFFIFVLQGIWLFIAELAGK-DLDLFTIFKFLTFYAPTIVPMVLPLSVLL 59
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
I+ F + E ++ GIS+ + + + +L + + N + + I+
Sbjct: 60 AAIMTFGSFAENYEFAAMKSSGISLQRAMKMLTITIGILALVSFFFANNVIPDAQFRFIN 119
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
L + + I + KK E T + +
Sbjct: 120 LRKDIVQQKPAMAIVEGQFNTIGTSNIKVD---KKTGDNGEFLEGVTMHVKNNNMGLGAN 176
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
++ + ++
Sbjct: 177 TIIKAKRGVLTSQDDSNYLQLELYDGYYYED 207
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 2/135 (1%)
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
KN +L P ++ + ++ A+ S + I + + + VI
Sbjct: 310 KNIESLFNPTELKQILEMAKSNATSSEFSIQSSKTDLEIKA-KNIGYHWMAIHEKFVIAY 368
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ M I A + R + + + + + I T + + + P A +
Sbjct: 369 ACLLMFFIGAPLGA-IIRKGGLGLPIVFAMLIFIAFHFINTFGRKLAEESTITPFIGAWM 427
Query: 343 PVILTISLSILILLQ 357
I+ +IL+ +
Sbjct: 428 SSIIMTPFAILLTYR 442
>gi|89898056|ref|YP_515166.1| hypothetical protein CF0249 [Chlamydophila felis Fe/C-56]
gi|89331428|dbj|BAE81021.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 357
Score = 55.9 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 48/360 (13%), Positives = 118/360 (32%), Gaps = 9/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTITFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S ++ P ++ S +
Sbjct: 58 YLLPFILPISCFISAFTLFRGLSDNNQITFLKASGASHGIIIFPALMVSCAICCINFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRFQTCKEIANMAMTSPTLLLQTLQKKENNRIFITVDHCAKSKFDNV-----II 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ D++ + + + ND V+ K VV + ++ + ++ +
Sbjct: 173 ALKRDQEIANVGIIKTIIPDVANDTVQAKNVVMISKLPSTLTDQHSSNSQEYYIESLNEM 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + M + ++ + + L + + L+ +++
Sbjct: 233 LIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHAHLPETLRRIGIGLLCITLTYSGMV 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILLQKE 359
+ I + + I+ GK+ L P I + + I +E
Sbjct: 293 LGTYKPRFRKPIILYCVFPVMDLILLIVGKNTNSLFPALMLFIVPQVISWIVFAIRAYRE 352
>gi|167646492|ref|YP_001684155.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348922|gb|ABZ71657.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 378
Score = 55.9 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 66/182 (36%), Gaps = 1/182 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY F+ L TL L + L + + + E S + A +P
Sbjct: 1 MRLIERYLFRQLLGPTLLATLALVALALLARSLSEFDVLIEQR-QSAMVFLKIIALALPQ 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P V +V L+ E+V+ A G+S W++++P + ++L + ++ +
Sbjct: 60 LLSVILPIALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVLATLISLAMSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + + K + + + + ++++
Sbjct: 120 WVAPWSSRAIRETFFDMKSDLASTLVRPGEFTEPGPGLTVYAQVIDRDQIIHNVFIHQEK 179
Query: 182 IT 183
Sbjct: 180 PN 181
>gi|157829182|ref|YP_001495424.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|157801663|gb|ABV76916.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 338
Score = 55.9 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/341 (11%), Positives = 123/341 (36%), Gaps = 11/341 (3%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
+V++ + ++ + + L +P ++ ++P I ++ I ++ NL
Sbjct: 1 MTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLK 58
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+L+I +A G++ QL P + ++++ + + + I + K+N
Sbjct: 59 VERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYI 118
Query: 144 KQKSDIIPW------MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ + + + ++ ++ ++ D S+ + ++
Sbjct: 119 SSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSP 178
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + + V + +S + + + ++ + Y I + ++
Sbjct: 179 IFELNKGIRQEYDV---NGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLA 235
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ I + + + I+ PL + +A +V L + S + + +
Sbjct: 236 PPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALAVFLRYPYSKKTTFMPVLFSALTVL 295
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
L T I + S L + A +++ +++ + + ++K
Sbjct: 296 LVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 336
>gi|189461471|ref|ZP_03010256.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
gi|189431805|gb|EDV00790.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
Length = 635
Score = 55.9 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 80/252 (31%), Gaps = 1/252 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + L +++ I+ A +
Sbjct: 5 KKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGK-GLEINVLAQFFFYSGLTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P V+ + LG + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPVVLFCVFLGGISFFFQNI 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I +K L+ K + + + + +
Sbjct: 124 IGPRAQKQLWTLLVSMKQKSPEVDIPEGVFYSDIDGYNIYVKHKDRKTGLLKDILIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ II + L + + + + + ++ + N+P + + F++
Sbjct: 184 DGFENAHIIWAAEGKLELTADKQHLFLHLYNGEQFENLKSQSVISRNVPYRRETFKEKHT 243
Query: 243 QFASRSFYEIIK 254
S + ++
Sbjct: 244 LIQFSSEFNMVD 255
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 1/147 (0%)
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
V I+ +S ++ + + + +S SF K
Sbjct: 309 VKIKTENIAVINTDSIYNSMTSQEKLKVLTTTENRVKSLSTDWDMKSFLTKDTDNSIRSH 368
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ ++ I + L + I A + R + V + + Y I + K
Sbjct: 369 RSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMPVVISVLIFVIYYIIDSGATRVAK 427
Query: 331 SGILLPVAAALIPVILTISLSILILLQ 357
SG + V + I+ L +
Sbjct: 428 SGEMNIVLGTWMSTIVLAPLGAFFTYK 454
>gi|188993099|ref|YP_001905109.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris str. B100]
gi|167734859|emb|CAP53070.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris]
Length = 360
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/361 (10%), Positives = 105/361 (29%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ L L+ +++ L +I + + +
Sbjct: 1 MPK-LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I+P ++ ++ L R SE+ + AIGI ++L P + + + +
Sbjct: 59 AYLPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ + + + +S
Sbjct: 119 LWLGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + ++L+ + + L D
Sbjct: 179 QKDDRIDVVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLD-YRLMTFASNDVALPD 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + E++ + A + + + PL+ +A L+ +S R
Sbjct: 238 RTKAHDANDPEVMSTFKLIGDA----RPIARAELHRRLAPPLLALAFALLTLPLSRSAPR 293
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + + ++ + + +G + + +++SI D
Sbjct: 294 QQRYG-RIMLAFLAYLVGTNLMIVGTQWIANGKVPGAVGLWWLTLPLLAVSIWA--YARD 350
Query: 361 G 361
G
Sbjct: 351 G 351
>gi|282880145|ref|ZP_06288865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
gi|281306018|gb|EFA98058.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
Length = 635
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 1/222 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + ++ + L + + S+ A +
Sbjct: 5 KKLDIFTAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGK-GLSMEIMAQFFWYMGLFL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL SEL ++ GIS+++ P + +I + + N
Sbjct: 64 VPQALPLAVLLSSLITFGNLGENSELTAIKSSGISMFRTFQPLISLTIFISFSSFYFQNY 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ LI K + + + + + +
Sbjct: 124 VGPKANMKLAQLILSMKQKSPELEIPEGIFYDGIPNSNLYVQKKDVETGKLYGIMIYRMT 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ II L + K L + ++ +
Sbjct: 184 GSYEDQAIILADSGMLQSTADKKHLLLSLWSGEWFENMQSQE 225
Score = 41.6 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + L + I A + R + + + Y
Sbjct: 363 GDKMLREHRIEMIGKFTLALTCLIFFFIGAPLGA-IIRKGGLGFPIIISVLVFIIYYIFE 421
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+SGI + + I L+ + +
Sbjct: 422 NTGYRMARSGIWTVNFGKGLAPAVLIPLAAFVTYK 456
>gi|126663512|ref|ZP_01734509.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
gi|126624460|gb|EAZ95151.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
Length = 156
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 1/150 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y K YL T L+ + + ID++E N+M E ++ V
Sbjct: 1 MKIIDKYILKRYLVTFSVMLIMFIPIGITIDVSEKVNKMIEKK-IPLTDILVYYGDFTVY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + I L +E++ + GIS + L PF+ G++++ IF +L+
Sbjct: 60 FANLLFPIFLFLSIIWFTSKLANNTEIIAILSSGISFARFLRPFIYGAVIVSIFALLMGF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
+ K D Q + +
Sbjct: 120 FLIPQASKGFNDFRYQNLKGNSQTRETSDI 149
>gi|315638467|ref|ZP_07893644.1| conserved hypothetical integral membrane protein [Campylobacter
upsaliensis JV21]
gi|315481458|gb|EFU72085.1| conserved hypothetical integral membrane protein [Campylobacter
upsaliensis JV21]
Length = 341
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/323 (12%), Positives = 101/323 (31%), Gaps = 13/323 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++++Y +L T L L +V ++ + S L +P
Sbjct: 1 MKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFI-QIANLTSSIEISFLDLFKLYGFMLPR 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +P V + + L++ +E V+ +G + ++ F+ + L + + V
Sbjct: 60 ILIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVAL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ Q + N K I + + F+ + +
Sbjct: 120 VMIP--------IVYQLQKNFVDYKKTQIKFNYKTGEFGQKFLDWMIFIQDEKEGGYENI 171
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I K+ ++ +A N + + + ++ + + +
Sbjct: 172 IMYHPKSTDNLKEQLIIAKEANLERSNEGFAFRLSAGKMYNFDADEALFIGEFENLVVNT 231
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + K + +I N +F + I L +A TL A S + R
Sbjct: 232 KFSDNLG----QTKAFYEYWDDINTNADKAREFVMYVCISLFPLASTLFALSFGIVTYRY 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITI 324
+ I + + ++
Sbjct: 288 EKGFIYLGMFGVIAVYFGLLSSL 310
>gi|15836744|ref|NP_297432.1| hypothetical protein XF0139 [Xylella fastidiosa 9a5c]
gi|9104925|gb|AAF82952.1|AE003867_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 361
Score = 55.9 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/363 (10%), Positives = 111/363 (30%), Gaps = 20/363 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ + L+ M++ L +I + + ++ R
Sbjct: 1 MPK-LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R SE+ + +IG+ ++L + + + + +
Sbjct: 59 SYLPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + DL++Q + + + + + + + +
Sbjct: 119 LWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQS 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS--TTLNIPIKMDGFQ 238
R + + ++L+ N T +
Sbjct: 179 QKDGRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPAL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ A+ Q + + PL+ +A L+ +S
Sbjct: 239 SVVYDSNHPDILPTFNLIGD-------PRREAQAQLHARLAPPLLALAFALLVLPLSRSA 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + F++Y ++ + + +G + V + + +++ +
Sbjct: 292 PRQQRYG-----AVMMCFLVYMVGTNLMIVGTQWIANGKISAVWGLWWLTLPLLLVAVWL 346
Query: 355 LLQ 357
+
Sbjct: 347 YAR 349
>gi|300728391|ref|ZP_07061753.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
gi|299774310|gb|EFI70940.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
Length = 631
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 1/222 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + ++ + L + + ++ A ++
Sbjct: 5 KKLDIFLAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGK-GIPMTALAQFFWYMGLMM 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ NL +SEL +A GIS+ Q L +V + ++ + + N
Sbjct: 64 VPQALPLAILLSSLITLGNLGESSELTAIKAAGISLLQALRSLIVITCIIMMASFYFENN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L+ K + + + + + +
Sbjct: 124 LGPDANMKLSQLLISMKQKSPELEIPEGVFYDGIPNSNIYVQKKDLKSGKLYGIMIYRMT 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ II + K + K+ ++
Sbjct: 184 QSYEDAAIILADSGMMQSTAEKKHLILKLWSGEWFENMRSDE 225
Score = 45.1 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ S + R + + + L + I A + R + V +
Sbjct: 354 EFKSLLTSDGDKNIRRHKIEMVNKFTVALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVL 412
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y + + GI + + ++I + +
Sbjct: 413 VFIIYYILDNSGFRMAREGIWAIWFGKGLAPGVLTPIAIFVTYK 456
>gi|8925955|gb|AAF81687.1|AF233069_10 unknown [Galdieria sulphuraria]
Length = 142
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 1/141 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ RY + + + + + + + + + + P
Sbjct: 1 MFTIIDRYILQLLIGPFVISSSAFTSITLSVGVLFELVR-RVVEGLPFKIAGKILLYKSP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P +L ++ F L EL+ R++GIS ++ L ++ L+ I + +
Sbjct: 60 YFIFLSFPLASLFATLITFNQLANNKELIGFRSLGISNYKWLRSTIIFGTLIAISSFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDN 141
+ I +L+++ K+N
Sbjct: 120 DLIVPVSNHRANELLRESKEN 140
>gi|160887737|ref|ZP_02068740.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
gi|317478670|ref|ZP_07937825.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
gi|156862768|gb|EDO56199.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
gi|316905181|gb|EFV26980.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
Length = 633
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/270 (12%), Positives = 79/270 (29%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L ++M ++ A +
Sbjct: 5 KKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGK-GLEMTVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ P ++ + + N
Sbjct: 64 VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNR---KTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + +D + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + SN ++
Sbjct: 241 KHAIIEFNSDFNMVDAGIMSNQSNSKDMRM 270
Score = 39.3 bits (89), Expect = 0.89, Method: Composition-based stats.
Identities = 24/240 (10%), Positives = 62/240 (25%), Gaps = 9/240 (3%)
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + + + N D D +SN + + ++ +
Sbjct: 225 NMNQRNVPYRRETFREKHAIIEFNSDFNMVDAGI---MSNQSNSKDMRMLQADIDSMKLQ 281
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + K + ++ D +K++K + +S +
Sbjct: 282 NDSVGRGYYKEAMAGTYKVTASLSKEDTLKIEKA-----YLGEYNVDSLYNVATLMQKQK 336
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S SF+ R T ++ + + L + I A +
Sbjct: 337 VISTAVSRAESAGSDWSFKSFNISQTESSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-G 395
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + V + + Y I + G + + L + +
Sbjct: 396 IIRKGGLGMPVVVSVLIFIIYYIINNTGYKMARDGQWVVWMGMWTSTAVLAPLGAFLTYK 455
>gi|254468135|ref|ZP_05081541.1| permease YjgP/YjgQ [beta proteobacterium KB13]
gi|207086945|gb|EDZ64228.1| permease YjgP/YjgQ [beta proteobacterium KB13]
Length = 368
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/344 (10%), Positives = 111/344 (32%), Gaps = 6/344 (1%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
+L +L +V + + + + + ++
Sbjct: 10 ELFYNSLSTILILSGIVVAQRGVVVFR-LASKGIIPNDSILTILVFSLIKYLPILLTLTL 68
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+ ++ R SE++I + G+ + + P + S+ + + + ++ +
Sbjct: 69 FLTILLTLSRWFRDSEMMIWFSSGLGLTSFIRPILFFSLPIILLIGFLSLYLSPWATQKS 128
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ K+ + + + + + ++ L S K I+
Sbjct: 129 EEYKAGLKNRDELATISPGSFKESKSKDRVFYVEGFGDLGSKVKNVFVQSEQNGKLGIIV 188
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
+ + ++ + + +Y + N T + ++ + E
Sbjct: 189 SNEGSRVSTSTDKDEYIVLKKGKRYEVNHENNNFTEIKFNDYGFLVERKLPPIIDVNQVE 248
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ + + R +F + + +PL + + ++A +S RS + I+
Sbjct: 249 AMPTALLL----LTNTNREIAEFVWRVSLPLSGIVLIILAIPLSFINPRSGRSANIIIA- 303
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + ++ + +S+ G L P I +L IS++ ++
Sbjct: 304 IMIFAIYNNLMGVTQSYINLGKLNPYVGGAIVHVLIISIASYLM 347
>gi|71275899|ref|ZP_00652182.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|71899263|ref|ZP_00681425.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71163276|gb|EAO12995.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|71730996|gb|EAO33065.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 408
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 115/361 (31%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + ++ + L+ M++ L +I + + ++ R
Sbjct: 48 MPK-LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFI 105
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P ++ ++ L R SE+ + +IG+ ++L + + + + +
Sbjct: 106 SYLPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCS 165
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + DL++Q + + + + + + + +
Sbjct: 166 LWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQS 225
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
R + + ++L+ N L +
Sbjct: 226 QKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPEL 285
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + S + A+ Q + + PL+ +A L+ +S R
Sbjct: 286 SVVYDSNHPDILPTF-----NLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPR 340
Query: 301 SNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + F++Y ++ + + +G + PV + + +++ +
Sbjct: 341 QQRYG-----AVMMCFLVYMVGTNLMIVGTQWIANGKISPVWGLWWLTLPLLLVAVWLYA 395
Query: 357 Q 357
+
Sbjct: 396 R 396
>gi|57242354|ref|ZP_00370293.1| conserved hypothetical integral membrane protein, putative
[Campylobacter upsaliensis RM3195]
gi|57017034|gb|EAL53816.1| conserved hypothetical integral membrane protein, putative
[Campylobacter upsaliensis RM3195]
Length = 351
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/322 (14%), Positives = 101/322 (31%), Gaps = 13/322 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++++Y +L T L L +V ++ + S L +P I
Sbjct: 12 KLIFKYILNQFLGTHLSIFLVLFGIVSMVFFI-QIANLTSSIEISFLDLFKLYGFMLPRI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P V + + L++ +E V+ +G + ++ F+ + L + + V
Sbjct: 71 LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVALV 130
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + +K K + Q K+ EN I S
Sbjct: 131 MIPIVYQLQKNFV-DYKKTQIKFNYKTGEFGQKFLDWMIFIQDEKEGGYENIIMYHPKST 189
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K+ II ++ +L + Y + N+ + +
Sbjct: 190 DNLKEQLIIAKEANLERSNEGFAFRLNEGKMYNFDGGEALFIGEFENLVVNTKFSDNLGQ 249
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
A +++ I N +F + I L +A TL A S + R
Sbjct: 250 TKAFYEYWDDIN-----------TNADKAREFVMYVCISLFPLASTLFALSFGIVTYRYE 298
Query: 303 QPRIIVAYGIFSGFMLYTIITI 324
+ I + + ++
Sbjct: 299 KGFIYLGMFGVIAVYFGLLSSL 320
>gi|281422565|ref|ZP_06253564.1| putative permease [Prevotella copri DSM 18205]
gi|281403389|gb|EFB34069.1| putative permease [Prevotella copri DSM 18205]
Length = 632
Score = 55.5 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 1/151 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L +++ ++ A ++
Sbjct: 5 KKLDIFIAKQFGLLFMGTFFICQFVLMMQFLWRYIDELIGK-GLTMDVMAQFFWYMGLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q +V +I++ + N
Sbjct: 64 VPQALPLAILLSSLMTFGNLGESSELTAIKAAGISLMQAFRSLIVITIIIMFGSFYFQNN 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
+ L+ K + + +
Sbjct: 124 VGPKSNMKLAQLLISMKQKSPELEIPEGIFY 154
Score = 42.8 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 9/94 (9%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + + + + L + I A + R V + + + +
Sbjct: 363 DYMIRQHKIEAINKFTLALSCLIFFFIGAPLGA-IIRKGGLGFPVVISVLVFIVFFILDN 421
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+SG+ + + L+I + +
Sbjct: 422 TGYRMSRSGMWAIWFGKGLAPAVLTPLAIFVTYK 455
>gi|282892297|ref|ZP_06300693.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497888|gb|EFB40239.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 359
Score = 55.1 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 117/361 (32%), Gaps = 25/361 (6%)
Query: 22 LGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFN 81
+ + ++ +EI + + S +++P I+ +IP +L+ ++++
Sbjct: 1 MAFVAILLTTRFDEIAHFAA--LGAAGSHIIWFIVSQIPYILPIVIPISSLIASLLLIQR 58
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD- 140
L++T EL RA G +I +L P ++ + + + +++ +AT+ L ++ +
Sbjct: 59 LSQTHELTALRASGWAIRDILYPILIAAAFIALLNFYIVSELATNSHLQASLLKKELRSI 118
Query: 141 ------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
N + + + + + I K
Sbjct: 119 NPLLLLNNKHLMRVKGAYFHAMGNSRVGEFAKNALFAMPSKQNNRIQLMIAKSLHADSVL 178
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKFSEQFASRSFYE 251
++ + ++ + + + + + T I S S
Sbjct: 179 FIGNSVTNMTTLPVENGESFDHFVVENLEKTMTPIQDFSLIFQRNVFSLSNDHLKLSLLI 238
Query: 252 IIKK-----------MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
K + K R+ + + + + + TL+ + + SR
Sbjct: 239 YRMKEQALHLRQPNLLREEMKQLQKQQNRSYAEIIRRFSLAIAVFSFTLMGCAFGMNISR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +V + + + Y I + + LIP +L + +S IL +
Sbjct: 299 HRSNKGVVF--VIALAVFYLISYFTAKGIEHHLFSATLLYLIPHLLILGISSFILYRVSR 356
Query: 361 G 361
G
Sbjct: 357 G 357
>gi|260886192|ref|ZP_05897457.1| putative permease [Prevotella tannerae ATCC 51259]
gi|260850440|gb|EEX70309.1| putative permease [Prevotella tannerae ATCC 51259]
Length = 629
Score = 55.1 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
Q++ + + + I A + R + + Y I
Sbjct: 335 GDKSVRTHRIQWHQKFTMSIACIFFFFIGAPLGA-IIRKGGLGMPTIIAVILFIFYYIIN 393
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
T + G + I ++ L + +
Sbjct: 394 TSGMKMARDGAWNMIFGMWISTVVLTPLGCFLTYK 428
>gi|51474040|ref|YP_067797.1| hypothetical protein RT0862 [Rickettsia typhi str. Wilmington]
gi|51460352|gb|AAU04315.1| conserved hypothetical protein (possible transmembrane protein)
[Rickettsia typhi str. Wilmington]
Length = 360
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 131/358 (36%), Gaps = 11/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P+++ +
Sbjct: 6 KYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPILLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ + ++ NL +L+I +A G++ QL P + ++ + +F + + I
Sbjct: 64 LPVITVISVLYIYNNLKVERQLIILQASGVNNIQLALPALYVALTVMLFAYYISSTILPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF------IGAKKILPENHIWEDFT 180
+ K+N + + +I+ I+ ++ D
Sbjct: 124 SHINLKSRLSFIKNNYISSMIEEKTFNKITKNITVFIDKKLAGNIMNGIIIFDNRNADKP 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
SI + + + + + V + +S + + +
Sbjct: 184 SIVFAGSGTLNIHGNNPIFELNKGLRQEYDV---NGNLTQLTFDSLMIKLQNDSSLASQR 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + Y I + ++ S+ I + + + I+ PL + +A +V L +
Sbjct: 241 TQHNKEANEYYISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLALAVFLRYPY 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + I +L T I + S L + A +++ +++ + +L++K
Sbjct: 301 SKKTTFIPVLFSALTVLLVTAIHFILQNFASKNLDFIFACYFNLLVALTIGLYLLVRK 358
>gi|237750188|ref|ZP_04580668.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229374082|gb|EEO24473.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 356
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 117/359 (32%), Gaps = 8/359 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + YLK TL L G +D + + + + N A
Sbjct: 2 FFWFVALRYLKPTLVILCGLEFFFICVDSLQYFDALAQSAN----NAIWFLAFDAMYAFN 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ IV + +L ++++ V ++G S ++ P + L+ + +
Sbjct: 58 YVLPLALLLGLIVFYISLIKSNQYVALLSLGYSRRKIFYPPFLIINLVVCGYIGLNATDF 117
Query: 125 TSGEKIGIDLIQQWKD---NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ +++ + + D ++ + + +
Sbjct: 118 VYAQERADNIVSSSNNADVSKDLFIRYNTDYVFFEKVYPLLQKAENIQIYHTEYKDSRKL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++I + + D + + G I +STT K F
Sbjct: 178 VSITRAKEGYFHNDEWKLLNPQVSILPTSYDLGDKGMITTGHDSTTTLKGFKPKVLDTFY 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + S + + + R Y L V P + + +I A + +R
Sbjct: 238 KNKPAISITDAFYSLQILMQEGA-DTARTRGVLYTLAVTPFFISMLCVIIAYYAPPLARY 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
++ M++ + + + + +P + L+P+ + + +SI+ + ++
Sbjct: 297 GNLAMLGVSLSVLSLMVWGVFFSLGKLNANAVFIPEFSMLVPLGILLVVSIVYYRKLDE 355
>gi|213162832|ref|ZP_03348542.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 219
Score = 55.1 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 3/150 (2%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS--NI 264
+L+ + T L ++ FQ + ++ +
Sbjct: 50 QLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN 109
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
N RA + ++ I + + M L+ +S+ R + + + + + + I T
Sbjct: 110 TDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTS 168
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILI 354
+KS G G L PV ++ ++L+I +
Sbjct: 169 IKSNGGKGKLDPVIWMWAVNLIYLALAIGL 198
>gi|255322347|ref|ZP_05363493.1| ribonuclease PH [Campylobacter showae RM3277]
gi|255300720|gb|EET79991.1| ribonuclease PH [Campylobacter showae RM3277]
Length = 341
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 101/347 (29%), Gaps = 21/347 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F +L T +++ ++ ++ + L +P ++
Sbjct: 6 RYLFSNFLGTFASLFATLFLIMSIVFFI-QIARITSYIEITFIELFKLYMFMLPRVLLFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V ++FF L+R +E ++ +G S ++ F++ S + IF ++ + +
Sbjct: 65 VPIAFFVSLALMFFRLSRENESIVLFTLGYSPVRIAKFFLIVSGAVSIFLIVTAIILIPT 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + K + S+ I + S
Sbjct: 125 AAELNSNFVSYKKTVAKLNLKTTEFGQKFSDWMVFIQNEKSDENGTLYEGVTLYSPKEGA 184
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
++ + + L + Y K +
Sbjct: 185 HRFVLAKNARLTNNNAVLEFTLSEGKIYDMRDASWHKTDFGTMKISTAQEDSVAQTKSFV 244
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ + + + F ++I L +A TL A S+ + R + +
Sbjct: 245 Q------------YWQAMSEDKKRAKDFATYVLIALFPLATTLFALSLGIVTYRYEKGFV 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
F +T+I + S A +L SI
Sbjct: 293 YFGI-FGVLFGYFTLIMLFSSR-------VFIAIAAIFLLFFIASIF 331
>gi|88703588|ref|ZP_01101304.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
gi|88702302|gb|EAQ99405.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
Length = 362
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 6/332 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y L TL + ++ + + + + R+P ++ ++
Sbjct: 6 YLAGDVLGHTLAVSSVLLAIILTGRFVKYLAEAAS-GKLAAEILLPVMFYRLPGFLELLL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ + L SE+VI A G+ +L + + ++L+ + + + G
Sbjct: 65 PLGLFIGILMSYGRLYVESEMVILSACGVGPAKLASFTLAPALLIMLVVAGLSLLVTPQG 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L+ + Q + A I PE + + +
Sbjct: 125 VARSEALLNDPQALQGLQLLAAGRF--QPRGDDGTVTYAADIDPEAGELDQVFLYAPEDR 182
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+A + V + V Y R + T ++ F F ++
Sbjct: 183 TADTEVAGVTVARRGSVVVDPESGVRYLELRDGYRFSGTPGRADYRIVRFGTFGQRLPDT 242
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQF--YFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + + + + AE + ++ + + LM+ + L+A S+S R +
Sbjct: 243 PSMARSEPVDAKPTAALLDSDNAEDRAALHWRLSVALMVPVVALLALSLSKTNHRRGRY- 301
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
I +A + + +++ G
Sbjct: 302 IKLAPALLLHLSYLFALASIRTSVAEGDAPAY 333
>gi|213855151|ref|ZP_03383391.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 206
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 3/150 (2%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS--NI 264
+L+ + T L ++ FQ + ++ +
Sbjct: 37 QLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN 96
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
N RA + ++ I + + M L+ +S+ R + + + + + + I T
Sbjct: 97 TDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTS 155
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILI 354
+KS G G L PV ++ ++L+I +
Sbjct: 156 IKSNGGKGKLDPVIWMWAVNLIYLALAIGL 185
>gi|150025640|ref|YP_001296466.1| hypothetical protein FP1590 [Flavobacterium psychrophilum JIP02/86]
gi|149772181|emb|CAL43657.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 484
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S + +FS Y VI + M I A + R +
Sbjct: 339 MSAKQNFDINNFSLDYKKKDINSFWISIYEKFVIAFACILMFFIGAPLGA-IIRKGGLGL 397
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + T K + + P A I L + L+I +
Sbjct: 398 PIVFAMLIFITFHFLNTFGKKVAQESGMAPFLGAWISFFLLVPLAIFL 445
Score = 45.1 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 1/162 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K YL + + + + + + +++ + + ++P
Sbjct: 1 MKILDKYLLKTYLTSFFGVFIILIFIFILQTVWLFISELAGK-DLDLILILKFLLFKMPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I ++P L+ I+ F ++ E ++ GIS + + LL I N
Sbjct: 60 LIPLVLPLSVLLSAIMTFGDMAENYEFAAMKSAGISFQRTMKGLTFFIFLLSIGAFFFAN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ E + + + I N +
Sbjct: 120 NVIPYAEFKFNNFRKNIAQVKPAMAIAEGQFSTIGNINIKVN 161
>gi|323137915|ref|ZP_08072990.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
gi|322396918|gb|EFX99444.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
Length = 388
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 4/177 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L+ Y FK L L + V + L I + P
Sbjct: 1 MPRLLFSYLFKRVGFGVLIVQLALSVPVVLSYLLYQLPPAAVRGGLVIPALVGIT----P 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P V + F + + + A+ +S W + P + + + + +
Sbjct: 57 TVAYVTLPMAVGVATALEFSRMASEGMIAVLYALRLSAWSICRPALTLAAGIVVLGYALA 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
N IA D++ +++ + + D + N + ++I
Sbjct: 117 NFIAPHYATNMQDVLNVVRNSLNHRMLDAAHFYTFDNGVKTLYIERWVTPDLAANLF 173
>gi|189464158|ref|ZP_03012943.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
17393]
gi|189437948|gb|EDV06933.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
17393]
Length = 632
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/270 (12%), Positives = 81/270 (30%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L + ++M +S A +
Sbjct: 5 KKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGK-GLEMSVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ P +V I + + N
Sbjct: 64 VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIIFICGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNR---KTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + +D + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKSDSGRLEMTADKQHLYLHLYNGEQFENLKSQNMNQKNVPYRREAFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + S+ ++
Sbjct: 241 KHAIIEFNSDFNMVDAGIMSSQSNSKDMAM 270
Score = 40.8 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ R T ++ + + + + I A + R + V +
Sbjct: 352 WSFKSFNITQTDTSLRRHMTSWHEKLTLSVACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + +
Sbjct: 411 LIFIIYYIINNTGYKMARDGQWIVWMGMWTSTAILAPLGAFLTYK 455
>gi|327537720|gb|EGF24427.1| hypothetical protein RBWH47_05036 [Rhodopirellula baltica WH47]
Length = 430
Score = 54.7 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY +L+T L + V + + S VLA P ++
Sbjct: 4 IDRYVLILFLRTVCVCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPYLLL 63
Query: 65 QI---IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
ITL+ + L RT EL + + G+S ++L P ++ S+ + +
Sbjct: 64 LFDMTGTIITLMAFLFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLANRE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKS 147
+ + + ++
Sbjct: 124 WVIPRFRDSLTMKAKNLSGDIEQAVM 149
Score = 46.2 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG- 329
T + IV + A+ L+ + R + +++ + + + TI + G
Sbjct: 340 RTTTHERIVRAPLDFALILLVLP-MVVNRRGRKLFVLIGSAVGLIIAFFALKTIASALGG 398
Query: 330 KSGILLPVAAALIPVILTISLS 351
+ ++ P AA IP+++ L+
Sbjct: 399 STTMVTPGIAAWIPLLIIGPLA 420
>gi|224536882|ref|ZP_03677421.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521506|gb|EEF90611.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
DSM 14838]
Length = 632
Score = 54.3 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/270 (13%), Positives = 82/270 (30%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L + ++M +S A +
Sbjct: 5 KKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGK-GLEMSVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ P +V IL+ + N
Sbjct: 64 VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIILICGVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNR---KTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + +D + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQKNVPYRREAFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + SN ++
Sbjct: 241 KHAIIEFNSDFNMVDAGIMSNQSNSKDMAM 270
Score = 39.3 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+S R T ++ + + + + I A + R + V + +
Sbjct: 357 YSMSQTDTSLRRHMTSWHEKLTLSVACLIFFFIGAPLG-GIIRKGGLGMPVVVSVLIFII 415
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
Y I + G + + L + +
Sbjct: 416 YYIINNTGYKMARDGQWVVWMGMWTSTAILAPLGAFLTYK 455
>gi|330997503|ref|ZP_08321352.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
gi|329570534|gb|EGG52258.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
Length = 633
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 1/160 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ + FK Y + + + + + +++ ++ A +
Sbjct: 5 KKIDIFVFKAYSLLFVGTFFICLFIFLMQFMWRYVDELIGK-GLTLDVLAHFFYYASLTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ +++ F NL EL+ +A GI + ++L P ++ +ILL I + N
Sbjct: 64 IPMSLPLAILLASLITFGNLGERFELLSMKAAGIPLVRILQPIIIFNILLCIGSFYFQNI 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
+K LI K + + +
Sbjct: 124 TGPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIF 163
Score = 49.7 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+++ + L + I A + R + V + Y I
Sbjct: 362 DQSTRTHWVEWHKKFTLSLACLFFFFIGAPLGA-IIRKGGLGVPVVISVTIFIFYYIINV 420
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ KSG +P + ++ + I + +
Sbjct: 421 SGEKMAKSGEWIPWFGEWLSSMVLCPIGIFLTYK 454
>gi|325282782|ref|YP_004255323.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314591|gb|ADY25706.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 402
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 6/214 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L +L L+ L + A +VP +
Sbjct: 4 INRYILSELIPPLLAGVLLFTALLSFGYFF---VSSQWLQGVAPGLVAQWIGYQVPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ IV F LN ELV ++ GI + Q P + +LL + ++ + +A
Sbjct: 61 KVLPMAAVLMTIVAFGRLNTERELVALQSGGIGLGQAGRPVALIGLLLALLSLWLSLWVA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L ++ + S
Sbjct: 121 PKANVETRSLYWDVMTGSGLSSMAGRTLDLGGGLNVYWAGYDPATRKLQNVRAERWSKDD 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
K+ +++ ++ ++ ++L +
Sbjct: 181 PKRVELVFARE---GTFEDNLLRLTDYQAFTVNY 211
>gi|213022333|ref|ZP_03336780.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 125
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIA 124
+A
Sbjct: 123 WVA 125
>gi|332880892|ref|ZP_08448562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332681066|gb|EGJ53993.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 633
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 1/160 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ + FK Y + + + + + +++ ++ A +
Sbjct: 5 KKIDIFVFKAYSLLFVGTFFICLFIFMMQFMWRYVDELIGK-GLTLDVLAHFFYYAGLTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ +++ F NL EL+ +A GI + ++L P ++ +ILL I + N
Sbjct: 64 IPMSLPLAILLASLITFGNLGERFELLSMKAAGIPLIRILQPIIIFNILLCIGSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI 162
+K LI K + + +
Sbjct: 124 TGPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIF 163
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 41/144 (28%), Gaps = 1/144 (0%)
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+ R ++ ++ + + + S + +K +
Sbjct: 312 TKIARQTLNFDTLYSQLTVSQQQSILRNAMQKSTVATNEYEFRGLISKDIDQSTRTHWVE 371
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
++ + L + I A + R + V + Y I + KSG
Sbjct: 372 WHKKFTLSLACLFFFFIGAPLGA-IIRKGGLGVPVVISVTIFIFYYIINVSGEKMAKSGE 430
Query: 334 LLPVAAALIPVILTISLSILILLQ 357
+P + ++ + I + +
Sbjct: 431 WVPWFGEWLSSMVLCPIGIFLTYK 454
>gi|29347827|ref|NP_811330.1| hypothetical protein BT_2417 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339729|gb|AAO77524.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
Length = 616
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 74/256 (28%), Gaps = 4/256 (1%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ + + + L +++ +S A ++ +P L+ ++
Sbjct: 3 FIGTFFICLFIFMMQFLWRYVDELVGK-GLDMSVIAQFFFYSALTLVPISLPLAILLASL 61
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 62 ITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLII 121
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
K + + D + K + + D + + H A
Sbjct: 122 SMKQKSPELDIPEGVFYSEIP---DYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYA 178
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
D + K + G + + S ++ ++F E+ F
Sbjct: 179 DSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMA 238
Query: 257 SFSNKSNIFHNYRAET 272
S SN
Sbjct: 239 DASIMSNTSAAKDMSM 254
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/259 (9%), Positives = 65/259 (25%), Gaps = 2/259 (0%)
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEK-IGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
++ + L +++ + + + K + ++ +
Sbjct: 182 RMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADAS 241
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
AK + + + + K V +
Sbjct: 242 IMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANI 301
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +S P+ S + + I S++ S+ + + E +++ I
Sbjct: 302 TEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKI 361
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
I L + I A + R + V + + Y I + G +
Sbjct: 362 TISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM 420
Query: 339 AALIPVILTISLSILILLQ 357
+ L + +
Sbjct: 421 GVWTSSAVLAPLGAFLTYK 439
>gi|225024725|ref|ZP_03713917.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
23834]
gi|224942520|gb|EEG23729.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
23834]
Length = 370
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/340 (11%), Positives = 104/340 (30%), Gaps = 10/340 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R F K +T + + + + + ++ + A L A ++ +
Sbjct: 5 RKFIKEVSQTAMGVFVLLLATLVAVQAVKLLGGAAGGK-VAADAVATLVAFWTVALMPIV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + + V R SE+ + + G+S++ + P + ++ + T LV +
Sbjct: 64 LILTAYISALTVLSRYWRDSEMAVWLSSGLSLYGWIRPLMAFAVPFALLTALVSMLVMPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSITI 184
+ + + K D + + ++ K
Sbjct: 124 ADARSREFAEVLKRRQDTSMVRPGVFQEFGGSTPRVYFVEKFDAGSGEAANLFIREQNPQ 183
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ I + ++L Y D + + +
Sbjct: 184 GRDTLITAERGRFAEADNKRTLELFNGRRYSGTPGMADYDEVSF------ERLHLVVGTA 237
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+I ++ + K N + + I +P+ ++ + L+A +S +RS +
Sbjct: 238 PKLVQRDIHRRTVPTAKLWGNTNPDLRGELMWRITMPVSVLILALLALPLSYMDNRSGR- 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ I + +T+++ SG + ++P
Sbjct: 297 SYSLLSAIGMFLLYQNGLTLVRDGISSGKIPLWPGLIVPH 336
>gi|331001132|ref|ZP_08324763.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
gi|329569437|gb|EGG51215.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
Length = 384
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 108/362 (29%), Gaps = 19/362 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE---LPNYSISRGAVLAATRVP 60
I + T +V I L I NQ + A + +P
Sbjct: 2 IYRKALTSELSNTAGGAFTVLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISR-AIGISIWQLLNPFVVGSILLGIFTVLV 119
+I + + R SE+ + A G+S+ + P + ++ + +
Sbjct: 62 ALIS----LALFLAVFMTLNRYWRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAAC 117
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS--NPQQDIFIGAKKILPENHIWE 177
++ ++ D K +++ + ++ +
Sbjct: 118 SIAVSPWSRAQVQAYRDRFAQKEDISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLM 177
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDG 236
+ + R + + + L +Y + + + I+MD
Sbjct: 178 VELKKDGSRSVLVSDRGHIENKPNGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDS 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ I + ++ RA ++ ++ I PL+ + + L+A +S
Sbjct: 238 SPSEVGANKKLNAMPIEDLIKRTD-------NRAASELFWRISWPLVALNLALLAIPLSY 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + + ++I +++ G + + A L + L+ +
Sbjct: 291 NNPRSMKYYGQ-TAAVLIFILYLNALSIFQTWITQGKVGILGATLYMNVPVAVLTTFLFY 349
Query: 357 QK 358
+
Sbjct: 350 RL 351
>gi|224026840|ref|ZP_03645206.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
18228]
gi|224020076|gb|EEF78074.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
18228]
Length = 631
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 1/237 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K +L + + + L +++ I A +
Sbjct: 5 KKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGK-GLEIKVLAQFFFLSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F N EL+ +A GI + +++ P ++ +LLG+ + N
Sbjct: 64 IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMQPVILFCVLLGLTSFFFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +K LI K + + + + +
Sbjct: 124 VGPKAQKELWTLIVSMKQKSPEVDIPEGVFYSDIDGYNIYVKQKDRETGILKDVLIYNFS 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ II + L + + + + + + + N+P + + F++
Sbjct: 184 DGFENAHIIWAAEGKLELTADKQHLYLHLYNGEQFENLKSQAGLSRNVPYRRETFRE 240
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S S+ K + + ++ I + L + I A + R +
Sbjct: 346 SLSSDWSMKSYLTKETDANIRGHRSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMP 404
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + Y I + KSG + + + ++ L + +
Sbjct: 405 VVLSVLIFILYYIIDSGATRVAKSGEMNIILGTWMSTLVLAPLGGFLTYK 454
>gi|303258296|ref|ZP_07344303.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
gi|302859049|gb|EFL82133.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
Length = 364
Score = 54.3 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/340 (11%), Positives = 105/340 (30%), Gaps = 13/340 (3%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+V I L I NQ Y + A + + +I + +
Sbjct: 1 MLFSIVVTIGLVRILNQTAG-GRYDTGSILEVVAYTSLINLPALISLALFLAVFMTLNRY 59
Query: 83 NRTSELVISR-AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
R SE+ + A G+S+ + P + ++ + + ++ ++
Sbjct: 60 WRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDRFAQK 119
Query: 142 GDKQKSDIIPWMQIS--NPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
D K +++ + ++ + + + R +
Sbjct: 120 EDISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELKKDGSRSVLVSDRGHIENK 179
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+ + L +Y + + + I+MD + I +
Sbjct: 180 PNGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVGANKKLNAMPIEDLIKR 239
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
++ RA ++ ++ I PL+ + + L+A +S RS + + +
Sbjct: 240 TD-------NRAASELFWRISWPLVALNLALLAIPLSYNNPRSMKYYGQ-TAAVLIFILY 291
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++I +++ G + + A L + L+ + +
Sbjct: 292 LNALSIFQTWITQGKVGILGATLYMNVPVAVLTTFLFYRL 331
>gi|332662936|ref|YP_004445724.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
gi|332331750|gb|AEE48851.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
Length = 538
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + + + I ++ I A + R + I + +
Sbjct: 414 MENRVKFIYDWQMKYSIAVVCFIFMFIGAPMGA-IVRKGGFGYPLLVAIVFFMLFVILTI 472
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ ++ AA +P ++ + L I + +
Sbjct: 473 FCRKIAETFVVSAYLAAWLPCLILMPLGIWLTYK 506
>gi|47155054|emb|CAE85253.1| putative permease [Escherichia coli]
Length = 227
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 1/228 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L QQ + D ++ + N + + + +TS
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTS 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ D V L Y D N L
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQILP 227
>gi|237747610|ref|ZP_04578090.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229378972|gb|EEO29063.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 357
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/335 (10%), Positives = 105/335 (31%), Gaps = 7/335 (2%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
+ + L I Q + + L + I+ V ++V
Sbjct: 3 LFTITITMMLIRILGQAAK-GRVASDDVLALLGFTSLNYLPIILILTGFVSVLLVVTRSY 61
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+ SE+V+ A G+S+ + L P + +I + + L+ + + ++++ D
Sbjct: 62 QDSEMVVWFASGLSLTRWLRPVIEFAIPIVVLVSLLGFFATPWAYRQSAEFRERFEKRED 121
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ + + +K+ + + ++ + N
Sbjct: 122 IARISPGKF--QESAAAQRVFFVEKMSDDLNKVKNVFINSTRNGNITTVVSKEGTVETNE 179
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
K + G + + + D + + A S + + + +
Sbjct: 180 KGEKF---IVLDDGIRYEETPDQSGFRIMDFDKYTAYIASKADMSGTNVSARSMTTMELM 236
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
N + + + I +P M + + L+ + R+ + + + +++
Sbjct: 237 TDINSHKQGELLWRIGLPFMAILLILLGIPLGFVNPRAGR-SFNLIIAVLLYMTYSNLLS 295
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
M+++ ++ A ++ + +L+ +
Sbjct: 296 FMQAYVVQKKIMFGLAWWPLHLIVALVIVLLFAWR 330
>gi|118474326|ref|YP_891923.1| YjgP/YjgQ permease [Campylobacter fetus subsp. fetus 82-40]
gi|118413552|gb|ABK81972.1| putative permease, YjgP/YjgQ family [Campylobacter fetus subsp.
fetus 82-40]
Length = 341
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 94/320 (29%), Gaps = 14/320 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y F +L T +++ ++ ++ S S L +P I+
Sbjct: 5 NKYLFASFLSTFASLFATLFLIMSIVFFI-QIARITSYIEISFSELLKLYLFMLPQILLF 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP V + FF L++ +E ++ +G + N F+ S ++ + ++ +
Sbjct: 64 TIPIGFFVSVAMSFFRLSKENESIVMFTLGQDPKNISNFFIFISFIVSVVMLINSLIVMP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + I+ K + + I + ++ +
Sbjct: 124 IAQNLNDNFIEYKKTKLSLNIKPSEFGQKFGSWMVFIEKQNDNNDSLKYENIVMYDVSDE 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ I + N ++ LKK Y + +S + + K
Sbjct: 184 NERLITSQSGDIKNQNSNLELILKKGKMYDIRDNKWNISSYENMVIRTLIKDNKN----- 238
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
F + + ++ L +A + A S + R +
Sbjct: 239 -------ETYSLKEYWLKAFSDDKRAKDLSIYTLVALFPLASVMFALSFGIVTYRYEKGI 291
Query: 306 IIVAYGIFSGFMLYTIITIM 325
I F + I +
Sbjct: 292 IYFGI-FGVLFAYFAFIMLF 310
>gi|325278206|ref|ZP_08143700.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096660|gb|EGB95012.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 89
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
F+ ++ P++ A+ L+A S RS V G+ GF+ ++ +
Sbjct: 1 WLAFWTKVLQPMVTAALVLMAISFIFGPLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQ 60
Query: 331 SGILLPVAAALIPVILTISLSILILLQ 357
P+ A +IP + + +L +
Sbjct: 61 VFGFPPLLAVVIPAGICALAGVWLLRR 87
>gi|332520665|ref|ZP_08397127.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
gi|332044018|gb|EGI80213.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
Length = 540
Score = 53.9 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/236 (11%), Positives = 65/236 (27%), Gaps = 8/236 (3%)
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
D + ++ + + + + A + ++ +
Sbjct: 192 YYYDDTPPKDYKERLRKPFAKSIFDKYTMNIDLSQLNAVDLDDKSTDNKYSMLNISQLNY 251
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF---- 244
+ L+K + ++ T+ +D FQ +
Sbjct: 252 TTDSLHTERQEVYELFATNLEKRTNINTLNLSVEPKKDTIYTGNVLDLFQNNRKIQLLDY 311
Query: 245 ---ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A S +II+ + K+ R + + L + + + A + R
Sbjct: 312 AINAISSTTQIIQSKEANLKTKSNWLNRHIIALHEKFALALACIILFFVGAPLGA-LIRK 370
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I + I K+ K G P A ++ + LSI + +
Sbjct: 371 GGLGLPMVIAIVLFLTYHFIGIFAKNSAKDGTFNPALATWFSTLIMLPLSIYLTRR 426
>gi|62185347|ref|YP_220132.1| hypothetical protein CAB734 [Chlamydophila abortus S26/3]
gi|62148414|emb|CAH64181.1| conserved hypothetical membrane protein [Chlamydophila abortus
S26/3]
Length = 367
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/360 (13%), Positives = 118/360 (32%), Gaps = 14/360 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNE--------IQNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T +F L ++I++ + N S+ + ++
Sbjct: 2 YIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLAQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ E+I + DK + + +K L N ++
Sbjct: 122 FQWLHPICEQISTTKEHIDRGTLDKVQDKVPALYLKDQTVLLYSSIEQKTLTLNQVFWIK 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
TI K+ + + + + + K + + F K
Sbjct: 182 NPKTIYTMEKLAFTTPSLPIGLDVIRFSATESGSMELSEYSDMKEFPEIEFGFYDNPFSK 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAAS 293
E + + ++ + FY++++ PL ++ +I+A
Sbjct: 242 IFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLSTFYYMLISPLACISSMIISAY 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L FSR + + + + + S +L + P+I+ ++
Sbjct: 302 LCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLANSSVLPILPVMFFPLIILAIITNY 361
>gi|225011756|ref|ZP_03702194.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
gi|225004259|gb|EEG42231.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
Length = 463
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 36/133 (27%), Gaps = 1/133 (0%)
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
++ I RS + + + + +
Sbjct: 297 EFIISNEIWKKSRVMDESIVKVRSSIRNLNTKKNTFFAYQKTINLHKITLQEKYTLIFAS 356
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + LI A++ R + + + + I K+ + + P A +
Sbjct: 357 LFLFLIGAALGA-IIRKGGLGLPLVLSVLIFLTYHYIGLFGKNAAEDNSISPFFATWLST 415
Query: 345 ILTISLSILILLQ 357
+ +I++ +
Sbjct: 416 FILAPFAIILTRR 428
Score = 43.9 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 74/252 (29%), Gaps = 4/252 (1%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+ +F+I + I + P +I ++P L+ +++ + L+
Sbjct: 1 MFIFIIQTFWLFIDELAGKGLDIIIISKFLLYYSPKLIPLVLPLSVLLASLMTYGTLSEN 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
E ++ GIS+ + L + +LLGI T N + GE +L +
Sbjct: 61 YEFAAMKSTGISLQRALLALTIFHVLLGIGTFYFSNHVIPYGELKSYNLRRNLAKLEPTL 120
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+ +I + +K + ED ++ A+ + ++
Sbjct: 121 AIREGIFNEIGEINIKVA---RKYGDNDRFLEDVIIHEYTPNSENNIVIKAERGEMKSET 177
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ Y ++ + K + + + N
Sbjct: 178 TD-PNLKLVLYNGNRYEEVIPKKATDKERIPHAKVYFEEYEMNIDLSKFNNVDLEEENYK 236
Query: 266 HNYRAETQFYFL 277
+R +
Sbjct: 237 STFRMQKIDQLR 248
>gi|329964131|ref|ZP_08301297.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
gi|328525651|gb|EGF52680.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
Length = 633
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
S+S R T ++ + + L + I A + R + V +
Sbjct: 352 WSFKSYSISQTDTSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + +
Sbjct: 411 LIFIVYYIINNTGYKMARDGKWIVWMGMWTSTAILAPLGAFLTYK 455
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/270 (12%), Positives = 81/270 (30%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L ++M ++ A +
Sbjct: 5 KKLDIFILKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGK-GLEMTVLAQFFFYSALSL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ P ++ + + + N
Sbjct: 64 VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICLVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + + D
Sbjct: 124 IGPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKDR---KTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + AD + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKADSGRLEMTADKQHLYLHLFSGEQFENLKSQNMNQRNVPYRREAFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + S+ ++ +
Sbjct: 241 KHAIIEFNSDFNMVDTGIMSSQSNSKDMKM 270
>gi|332877577|ref|ZP_08445321.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332684426|gb|EGJ57279.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 150
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 2/137 (1%)
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
K K+D +++ +E+ K + + Y
Sbjct: 12 RKEQLDTIFKFKIDDLMPMEYTAENKNLFELDKFIERERMKGSPNLNMYLLVKYRRWGAI 71
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAA 340
+TLI +VS R I + G+ GF + + + SG L P+ A
Sbjct: 72 STAFILTLIGVAVSSVKKR-GGMGINLMVGVVVGFTFVFFDRVFGTLAQTSGGLSPLMAV 130
Query: 341 LIPVILTISLSILILLQ 357
LIP ++ ++L+IL+L +
Sbjct: 131 LIPNLIFLTLAILLLRK 147
>gi|189501480|ref|YP_001957197.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496921|gb|ACE05468.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
Length = 527
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/267 (16%), Positives = 80/267 (29%), Gaps = 8/267 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K ++ + ++ F+I +E+ + + L P
Sbjct: 15 FIKLFILVLSVTVFIMLMQFFLIYFDELIGK-----DLGFWVYVQLFCYFGINATPMAFP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
TLV +++VF +L EL ++ GI ++L P + LL IF I
Sbjct: 70 LATLVSSLMVFGSLGEQLELTALKSAGIPFIRILRPLLFLVTLLSIFVYFSNGYIVPKVT 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ + + N D I ++ LP+ ED K
Sbjct: 130 VKAHTLLYDLRKKKPSIAIKEGVF---YNGIPDYSIRVERKLPDQKTLEDIVIYDHTKNK 186
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+H A + V+E G ++K + + F S
Sbjct: 187 GNVHMTTASFGQLTTINNGQYLVIELFNGHNYLEKLPEKKDNKTSTASSKVIIPNFYRTS 246
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFY 275
F + N + T ++
Sbjct: 247 FKAQKVLIDLDAFKLTRTNEKYFTYYH 273
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 6/290 (2%)
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
++ L + E ++ S ++ F S + + T +
Sbjct: 208 LVIELFNGHNYLEKLPEKKDNKTSTASSKVIIPNFYRTSFKAQKVLIDLDAFKLTRTNEK 267
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
K + K +I Q I +K + + +
Sbjct: 268 YFTYYHSTKTTKEIIKDISKMQSRIKKNQTSILKDFQKHYHLPALDHTNLPANHKETAAV 327
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS---- 246
+ D + ++ + S + I + K S+
Sbjct: 328 DNIDITDTSSHQALSLQTDSKTIIAPSVQEDNVVSNKIPITHDLANNPKRSQIIQKALEQ 387
Query: 247 -RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ I+ + S + + + + M LI AS+ +
Sbjct: 388 VKELRYKIQPYTNKITSVDRKLKEFQIEKNKRTSYAIGCILMLLIGASLGA-LIKKGGFG 446
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + + Y + + K I+ ++ A P I+ + + L
Sbjct: 447 IPLLISTVFILLYYMVDIFGTKWAKVDIIDTISGAWAPNIVLLPFGLFFL 496
>gi|15618903|ref|NP_225189.1| hypothetical protein CPn0995 [Chlamydophila pneumoniae CWL029]
gi|15836526|ref|NP_301050.1| hypothetical protein CPj0995 [Chlamydophila pneumoniae J138]
gi|16752032|ref|NP_445398.1| hypothetical protein CP0860 [Chlamydophila pneumoniae AR39]
gi|33242364|ref|NP_877305.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|4377324|gb|AAD19132.1| CT838 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189772|gb|AAF38649.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979368|dbj|BAA99202.1| CT838 hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236875|gb|AAP98962.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|269302795|gb|ACZ32895.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
LPCoLN]
Length = 366
Score = 53.9 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/355 (13%), Positives = 119/355 (33%), Gaps = 12/355 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVI------DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++ L + L ++L + L+ ++ S+ + ++ L +
Sbjct: 6 RHLLTRFWFALTSLLVLALIFYASIHHSLHTLKGASTAASGASVKLSILYYLAQISLKAE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V F + E+++ +A G+S+ L++P ++ ++ + +
Sbjct: 66 FLMPQLVAVATTSTLFAMQNKREIILLQASGLSLKSLMHPLLLSGAVIMMVLYANFQWLH 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
EKI I + DK++ I K L N+++ TI
Sbjct: 126 PICEKISITKENMDRGTTDKEQGKIPALYLKDQTVLLYSSIEPKTLTLNNVFWIKDPKTI 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K+ + + + + K + + F K
Sbjct: 186 YTMEKLAFTTLSLPIGLNVTQFFANDSENLELKEFFDMKEFPEIEFNFYENPFSKLFSAG 245
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAET------QFYFLIVIPLMLVAMTLIAASVSLEF 298
E K + ++ + QFY++++ PL +A +++A + L F
Sbjct: 246 NKNRLSEFFKAIPWNATGLGLSTQVPQRILSLLAQFYYVLISPLACMAAIILSAYLCLRF 305
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
SR+ + + + + + + S +L + P+I+ L+
Sbjct: 306 SRTPTVTLAYLIPLGTVNIFFVFLKAGIVLASSSVLPTLPVMAFPLIVLFLLTNY 360
>gi|149194453|ref|ZP_01871550.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
gi|149135628|gb|EDM24107.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
Length = 338
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/336 (12%), Positives = 102/336 (30%), Gaps = 17/336 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+ Y + YLK + L+G +L ++D + ++ N + I
Sbjct: 3 FWYILRNYLKNFVITLIGFALLFVLVDYSFNFAKLPNSSNLQTLYIFYVFI----DSIFI 58
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P + ++ + + +ELV ++G +++L P + S+ I + + +
Sbjct: 59 LYPLALVFAFLLTLNKMIKFNELVSFYSLGFKPFKILKPIIYFSLFFFILIMYLQSTKIA 118
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + K++ P D +
Sbjct: 119 YVNQYAKAIKNNMQLKNKNLFLKYNN----------SVVYIKELNPILKEAYDVKIFVVK 168
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
I N + K V+ + + + +
Sbjct: 169 DNKLIKIIYTKKAKFFKNHWISNKAVITTLSKDRWDKEEKKLVFLENFKPKILSNLKTLN 228
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ S + + + R + +F + PL L+ + ++ S R +
Sbjct: 229 TISLSDAYIAIKYFK---DIDLNRVLSIVFFKVFTPLSLIILIILFFYTSPIHIRISNVS 285
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
I + I ++ + ++ F K G++ AL
Sbjct: 286 IFMIKSISLTIFVWGVELLLFKFTKQGVMPYYVIAL 321
>gi|154174487|ref|YP_001408138.1| permease YjgP/YjgQ [Campylobacter curvus 525.92]
gi|153793102|gb|EAU00183.2| permease YjgP/YjgQ [Campylobacter curvus 525.92]
Length = 342
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/350 (10%), Positives = 100/350 (28%), Gaps = 22/350 (6%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y +L T +++ ++ ++ + L +P ++
Sbjct: 5 NKYLLYNFLGTFASLFSTLFLIMSIVFFI-QIARVTSYIEITFGELLKLYMFMLPRVLLF 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P V + F L++ +E ++ +G S + F+ S L ++V +
Sbjct: 64 VVPIAFFVALAMTLFRLSKENESIVIFTLGSSPNSIAKFFLAFSAALSALLLIVAIVMIP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ + I K + S+ + + + I
Sbjct: 124 IASELNSNFIDYKKTVAKLNLKPTQFGQKFSDWMVYVGSEGSDENGTIYKNIVMFNPFIK 183
Query: 186 KKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++I ++A + ++ L Y +++ +
Sbjct: 184 DSQRLIVAQNAKMINTKSNIELSLNNGKIYDMRGKVYHQSNFKSMTIRTAQSEKINDVDS 243
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + + +++ L +A TL A S + R +
Sbjct: 244 I------------KEYWLEAKTSTKRKKDLSTYVLVALFPLATTLFAISFGIVTYRYEKG 291
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + F +T+I ++ P+ A + +
Sbjct: 292 AVYLGT-FGILFGYFTLIMLLSPR-------PIIAIPGVFAAFFAAGVWF 333
>gi|317477113|ref|ZP_07936354.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
1_2_48FAA]
gi|316906656|gb|EFV28369.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
1_2_48FAA]
Length = 635
Score = 53.5 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L + ++M ++ A +
Sbjct: 5 KKLDIFILKSFCLLFMGTFFICLFIFMMQFLWKYVDEMVGK-GLEMNVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ P + L+ + N
Sbjct: 64 VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + E + D
Sbjct: 124 IGPKAQTKLWTLLVSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNR---ETGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + +D + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQKNVPYRRETFVE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + SN +
Sbjct: 241 KHAIIEFNSDFNMVDAGFMSNQSSSKDMSM 270
>gi|62185346|ref|YP_220131.1| hypothetical protein CAB733 [Chlamydophila abortus S26/3]
gi|62148413|emb|CAH64180.1| conserved hypothetical membrane protein [Chlamydophila abortus
S26/3]
Length = 357
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 111/360 (30%), Gaps = 9/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S + P ++ S +
Sbjct: 58 YLLPFILPISCFISAFSLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRFQTCKEIANMAMTSPTLLLQTLQKKESNRIFITVDHCAKSKFDNVITALKRD 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D ND V+ + VV + ++ + ++ +
Sbjct: 178 KEIANVGLIKTIIPDV-----ANDTVQARGVVMISKLPSTLTDQCSSHSKEYYIETLDEM 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + M + ++ + + L + + L+ +++
Sbjct: 233 LIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHTYLPETLRRIGIGLLCITLTYSGMV 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILLQKE 359
+ I + + I+ GK+ L P I + + I +E
Sbjct: 293 LGTYKPRFRKSITLYCIFPVMDLILLIVGKNTSSLFPALTLFIFPQVISWIVFAIKAYRE 352
>gi|288817926|ref|YP_003432273.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
gi|288787325|dbj|BAI69072.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
gi|308751524|gb|ADO45007.1| permease YjgP/YjgQ family protein [Hydrogenobacter thermophilus
TK-6]
Length = 352
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 117/353 (33%), Gaps = 10/353 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y +Y+K + + +V L E+ E S + +P+
Sbjct: 2 LGKYVLFFYIKLFIVVNAILLGIVSSYALAELLFLFKEK---SANIAISYLLNLLPISFF 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF ++ +++ ++ +I ++ G+S + L ++ + + F +++ +
Sbjct: 59 YLLPFSAVITMMILLKHIFSKKLDLIVQSFGVSPLKFLLNIILFLVFVSFFNLIMSFDVY 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K + +++K + + + + + + +
Sbjct: 119 PESNKNLYSIEKEFKKRQEVEDLIVRNAWFFKEESGERIYINFQFVDIKDGNIAGVFLVK 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K+ I+ +D D + L + ++ + + Q E+
Sbjct: 179 SSKSNILEVIQSDRGSWKGDIILLPIAKVWNIKEGNFVAKGISIKLFE-IKNAQPIGEKV 237
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S ++++ S + + ++ +I L ++ I +V +
Sbjct: 238 EHISLHQLLLLYSLGKRVGLNYH----LYLSEIIRRFLSSLSPIAIGITVMSYAIKRRSI 293
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA--ALIPVILTISLSILIL 355
+ + F + + + F +S P+ A IP+++ + L
Sbjct: 294 LAGFLSFVPAFFFYWFSFVLTRFFSESVSFNPLYGLFAYIPLVILSLKGLYYL 346
>gi|215919050|ref|NP_819829.2| putative permease [Coxiella burnetii RSA 493]
gi|206583935|gb|AAO90343.2| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
Length = 372
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 112/335 (33%), Gaps = 3/335 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAA-AGKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K + +S+ Q + G + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLA 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ AD A Y+ ++ R ++ + +
Sbjct: 180 QSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +A + + I +PL + L+ +S R
Sbjct: 240 TSPAMDITERVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ ++ + + + +++ + G++
Sbjct: 299 KGKFAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 332
>gi|289548597|ref|YP_003473585.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
gi|289182214|gb|ADC89458.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
Length = 351
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/358 (10%), Positives = 107/358 (29%), Gaps = 12/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + Y+K + + E + S+ +P+
Sbjct: 2 LQRYILRLYIKAFGLSSAVLLGTGVLYLTFETLLVFRQK---SLEIFFQYILLSLPVAFL 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P ++ + ++ + + + G+ L+ P + S++L I + + I
Sbjct: 59 YLSPIVSWIALTMLIRFFIQRQLDRLIVSFGVPPIHLVRPVIFFSLVLSILHIYMSFQIY 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S ++ + +++K W + + ++ ++ D +
Sbjct: 119 PSFQRSLYTIEKEYKKGKKDTLLIKDQWFALKDGEKVVYSHIGLADVSKGTAYDVFLLYT 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + I + Y+ + + + + +
Sbjct: 179 KEGS--IEATLRASKAFWKGNSLFIPDAYYEDLEKGGKFYGPMEVSFLSLSNIRPLASKL 236
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+F E+I + + + I+ L L M L+ ++ +
Sbjct: 237 EHITFTELISVYGMAERLG-----INRYAYLAEILRRLQLSLMPLLMVTIVARALLKRRS 291
Query: 305 RIIVAYGIFSGFMLYTII-TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + L+ + ++K + + P+ L+P + + + L E G
Sbjct: 292 LVEGSLYGGFSLALHMLSLNLIKITAEEIGVNPLWG-LLPSFFLLMMVLRSLYDLEKG 348
>gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum seropedicae SmR1]
gi|300075193|gb|ADJ64592.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 376
Score = 53.2 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 94/301 (31%), Gaps = 5/301 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + L +I Q + L + +
Sbjct: 2 IFQRALRRELTSTAGGVFTTLFTITLTVMLIKILGQAAG-GQVASQDVIALIGFQSLNYM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ + ++V + SE+V+ A G+S+ + + P + + +
Sbjct: 61 PIILILTGFISVLLVMTRSYQDSEIVVWFACGMSLTRWIAPVLRFGWPIVALVAALSFVA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ D + + + + + F+ +I
Sbjct: 121 TPWANQQSSEYRSRFEQREDIARVSPGKFQESAAANRIFFVEGISGDASKVRNIFVNTIG 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D KN ++ K+ + I + + + +Y P + ++ S+
Sbjct: 181 ADGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQN 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A ++ K++ + + I +P M + + L+A +S R+ +
Sbjct: 241 AAGERSARALQMNELVAKNDGYARGELL----WRIALPFMALTLMLLAIPLSFVNPRAGR 296
Query: 304 P 304
Sbjct: 297 S 297
>gi|328676743|gb|AEB27613.1| conserved membrane protein of unknown function [Francisella cf.
novicida Fx1]
Length = 283
Score = 53.2 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/289 (15%), Positives = 104/289 (35%), Gaps = 7/289 (2%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + K+ + A I I + I
Sbjct: 61 DTNMVTYNTHDLWFKTPDG--FMNIANIEPTKGKAYGIRKFMVQDNKVREIRYAENATYI 118
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
+ A++ I ++ + + IPI + ++ +F +
Sbjct: 119 NDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISVAKVITINDNDY-LNFSQ 177
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ M SN +F+ + PL L+ + L+A +S+ +RS+ + + G
Sbjct: 178 LTSYM----LSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSSTLILKLLLG 233
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 234 AFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|89898055|ref|YP_515165.1| hypothetical protein CF0248 [Chlamydophila felis Fe/C-56]
gi|89331427|dbj|BAE81020.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 367
Score = 53.2 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 51/360 (14%), Positives = 117/360 (32%), Gaps = 14/360 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNE--------IQNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T + L +I++ I N S+ + +++
Sbjct: 2 YIWKRYVLTKFWLSLVFLIVLAFIFYASIHHSLHAIKGNATPLASGASLKLSILYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P +V S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTLTLFSMQNKREVLLLQASGLSLKSLTAPLIVSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ EKI + DK + + +K L N ++
Sbjct: 122 FQWLHPICEKISTTKEHIDRGTLDKAQDKVPVLYLKDQTVLLYSSIEQKTLTLNKVFWIK 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
TI K+ + + + + + K + + F K
Sbjct: 182 NPKTIYTMEKLAFTTPSLPIGLDVIRFSGTESGNMELSEFSDMKEFPEIEFGFYDNPFSK 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAAS 293
E + + ++ + FY++++ PL ++ +++A
Sbjct: 242 IFTAGGKNRLSESFRAIPWNATGLGLSTTVPQRILSLLSTFYYMLISPLACISAMILSAY 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L FSR + + + + + S +L + L P+I +
Sbjct: 302 LCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGIVLSNSSVLPTLPVMLFPLIALAIFTNY 361
>gi|269302797|gb|ACZ32897.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
LPCoLN]
Length = 357
Score = 53.2 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 23/367 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P V +F L+ +++ RA G S ++ P ++ S +
Sbjct: 58 YLLPFILPGSCFVSAFSLFRKLSDNNQMTFLRASGASQSIIMFPVLMVSGAICCLNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRYQTCKEIANMAMTSPALLLQTLQKKENNRIFIAVDHCAKSKFDNV-----IV 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + + + + D VK K VV + ++S+ + ++ +
Sbjct: 173 ALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDEL 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------FLIVIPLMLVAMTLIAAS 293
+ + + + + ++ + + I + + +T
Sbjct: 233 LIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRRVAIGFLCITLTYAGMI 292
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSI 352
+ + R + I F+ + I+ GK+ L + L +
Sbjct: 293 LGIHKPRFRK-------SIALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVF 345
Query: 353 LILLQKE 359
+E
Sbjct: 346 AARAYRE 352
>gi|329943109|ref|ZP_08291883.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|332287691|ref|YP_004422592.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|313848265|emb|CBY17266.1| conserved hypothetical membrane protein [Chlamydophila psittaci
RD1]
gi|325506677|gb|ADZ18315.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|328814656|gb|EGF84646.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|328914944|gb|AEB55777.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
Length = 367
Score = 53.2 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 51/360 (14%), Positives = 119/360 (33%), Gaps = 14/360 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNE--------IQNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T +F L ++I++ + N S+ + +++
Sbjct: 2 YIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ E+I I + DK + +K L N ++
Sbjct: 122 FQWLHPICEQISITKEHMDRGTLDKVHDKVPALYLKDQTVLLYSSIEQKTLTLNQVFWIK 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
TI K+ + + + + + K + + F K
Sbjct: 182 NPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGSIELSEYSDMKEFPEIEFGFYDNPFSK 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAAS 293
E + + ++ + FY++++ PL ++ +I+A
Sbjct: 242 IFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLSTFYYMLISPLACISSMIISAY 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L FSR + + + + + S +L + L P+I+ +
Sbjct: 302 LCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLSNSSVLPILPVMLFPLIILAIFTNY 361
>gi|262277384|ref|ZP_06055177.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
gi|262224487|gb|EEY74946.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
Length = 360
Score = 52.8 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/329 (13%), Positives = 101/329 (30%), Gaps = 6/329 (1%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+RYFF + K + L +L++ + + + N IS A P I+
Sbjct: 7 YRYFFIEFFKLFILINLSLSLLIWFTQAARLLELVTDYGN-PISVYAKYLLLIYPKILDN 65
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++ ++ +EL I GIS +++ + I+ I + IA
Sbjct: 66 TFLLSFIISLFFLYSKFETDNELQIYWLSGISKFKIHQLCIYIGIVSLIINLSFSIFIAP 125
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
G ++ K + K I+ + TI
Sbjct: 126 WSSYQGRMILGNSKFTLINAVVKEKNFNSPLKGLTVYVEKNNKQGNIEGIFIYEKTRTIT 185
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + + + + +K ++ K T+ K + +++
Sbjct: 186 AEKGEVLSDENGSYLKLINGTTQEK----TGSKVNFLKFQNTIFDFSKYQIKNTTAPKYS 241
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
R+ Y +I + S + I+ P M++ +T + + + + + +
Sbjct: 242 ERNLYWLINNLDNKKIS-KARKIELREEINSRIIKPFMILILTSLISFLIFTNNENINSK 300
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
Y + + I+ I+
Sbjct: 301 KFKFYIYCFSVLGIILNEILVRLSGESII 329
>gi|212218293|ref|YP_002305080.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
gi|212012555|gb|ACJ19935.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
Length = 372
Score = 52.8 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 112/335 (33%), Gaps = 3/335 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAA-AGKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K + +S+ Q + G + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLA 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ AD A Y+ ++ R ++ + +
Sbjct: 180 QSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +A + + I +PL + L+ +S R
Sbjct: 240 TSPAMDITGRVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ ++ + + + +++ + G++
Sbjct: 299 KGKFAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 332
>gi|332885237|gb|EGK05488.1| hypothetical protein HMPREF9456_02689 [Dysgonomonas mossii DSM
22836]
Length = 664
Score = 52.8 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ + + +++ V+ + I A + R + V + + Y
Sbjct: 359 KINMQKNIRMHKVEWHRKFVLSFACLIFFFIGAPLGA-IIRKGGLGMPVVVSVLLFIVYY 417
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I I + G+ + L + + +
Sbjct: 418 IIDNIGYKMARDGVWEVWQGMWLSSFALFPLGVFLTYK 455
>gi|212212731|ref|YP_002303667.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
gi|212011141|gb|ACJ18522.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
Length = 372
Score = 52.8 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 112/335 (33%), Gaps = 3/335 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAA-AGKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K + +S+ Q + G + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLA 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ AD A Y+ ++ R ++ + +
Sbjct: 180 QSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +A + + I +PL + L+ +S R
Sbjct: 240 TSPAMDITGRVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ ++ + + + +++ + G++
Sbjct: 299 KGKFAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 332
>gi|29840523|ref|NP_829629.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
gi|29834872|gb|AAP05507.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
Length = 367
Score = 52.8 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/360 (13%), Positives = 118/360 (32%), Gaps = 14/360 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNE--------IQNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T + L ++I++ + N S+ + +++
Sbjct: 2 YIWKRYVLTKFWLSLVSLIVLAFVFYASIHHSLHAIKGNSTALASGASLKLSVLYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIRSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ EKI + DK + + +K L N ++
Sbjct: 122 FQWLHPICEKISTTKEHMDRGTLDKAQDKVPALYLKDQTVLLYSSIEQKALTLNKVFWIK 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
TI K+ + + + + + K + + F K
Sbjct: 182 NPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGTMELSEFSDMKEFPEIEFGFYDNPFSK 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAAS 293
E + + ++ + FY++++ PL ++ +++A
Sbjct: 242 IFTAGGKNRLSESFRAIPWNATGLGLSTTIPQRISSLLSTFYYMLISPLACISAMILSAY 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L FSR + + + + + S +L + L P+++ +
Sbjct: 302 LCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGMVLSNSSVLPILPVMLFPLVVLAIFTNY 361
>gi|169837524|ref|ZP_02870712.1| Hypothetical membrane-spanning protein [candidate division TM7
single-cell isolate TM7a]
Length = 125
Score = 52.8 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+FY+ I L M LI S+ + R + + + G+ Y I TI++S
Sbjct: 37 RIEFYYRISFALSSFVMCLIGLSLGSRYVR-GGAALNIGLSVIIGYAYYGISTILRSMAV 95
Query: 331 SGILLPVAAALIPVILTISLSILILLQKE 359
+G + AA IP+I+ + I + E
Sbjct: 96 AGTVPIYAACFIPLIVFFVVGIKLFRDSE 124
>gi|330836570|ref|YP_004411211.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
gi|329748473|gb|AEC01829.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
Length = 427
Score = 52.8 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 1/140 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K +L + + FV + + ++ N S++ L +P +
Sbjct: 9 LLRKYIVKEFLASFAVAFTFFFFIFFVNQILLLIQRVMVK-NVSVADMLTLVVLSIPQFL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
PF +L +V + +E++ R+ GI ++ +P +V I+L + T +V + +
Sbjct: 68 IYTFPFSSLSAASMVIGEFSAHNEIIAMRSSGIPYRRIFSPVLVIGIVLSLLTFIVADML 127
Query: 124 ATSGEKIGIDLIQQWKDNGD 143
++
Sbjct: 128 LPFSSVRYQKEYREIMQKIP 147
Score = 47.0 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ K F+ + + + + + L A +S R + I + +
Sbjct: 325 KNYKIEDFYYTYYRAELHKKLALSAACFCLILTALPISFIKVRHGRL-IGFGLSLLIACV 383
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ I+ M+ P P +L +++ + L ++
Sbjct: 384 YWFILFFMQLKIFDVSFSPGWLMWFPDVLVLAIGLAFLSRQ 424
>gi|257457656|ref|ZP_05622823.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445042|gb|EEV20118.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 300
Score = 52.8 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 7/272 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + + + +L ++L+ + DL Q + + +P
Sbjct: 1 MKILQRYLLQLFFPVFVITILFFILLLQLGDLFLNLAQYLQNQ-VRFVTLLRVMYLYLPK 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +P L + N+ +EL A G+ + L+ P V+ L I +
Sbjct: 60 CISFAMPLSVLFASSYTMGNMYAKNELTSIFASGMPLTVLVAPLVLCGFALSIGMFYFED 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I ++ I L+ + + S + + I A +
Sbjct: 120 RILIHFQRQKIALVNELLEPQQNLNSSDLVILSE---SGKIVYFADYYDDNRKELSNVLI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQ 238
+ + + A D + Y + ++ + FQ
Sbjct: 177 VMRTESGDVSTVIKGSSAQWQTDHWAITDKSIYTFTAENDVHYQDAIDEGLFSEPSETFQ 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ S + + K
Sbjct: 237 RNITSIDEMSIAQAKVFIDNLKKWACPTMNIF 268
>gi|242309279|ref|ZP_04808434.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239524320|gb|EEQ64186.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 269
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 79/258 (30%), Gaps = 10/258 (3%)
Query: 110 ILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
I L IF++ + A + K + ++ + + + D
Sbjct: 10 IFLPIFSIAFLIASAFVLLNATPFAYAKEKVDLIVERGYLGSYKSDLFIKYDNNYIYFAK 69
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---------P 220
+ + + + +++ +A A + L+
Sbjct: 70 IFPLLQSAEGIQVFEVENEEVLRIIEAPKATFNEGEWILENAKITTIQPQLEVGKNPLWV 129
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
++ + K E+ S S + + M+ NI + + Y L++
Sbjct: 130 EEQKVYKTLVGFKPKILDNIYEKQGSISIVDAFEAMNLLEGQNI-NTQKLRASLYVLLLF 188
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P M + + + +R I I +++ I+ SG L P +
Sbjct: 189 PFFAPLMMVCLSGFTPNSNRYANLGGITLGMILGILVVWGILFSFSRLSMSGFLQPEFSV 248
Query: 341 LIPVILTISLSILILLQK 358
++P+ + +S + ++
Sbjct: 249 IMPIGILALISAWLFVRL 266
>gi|260891452|ref|ZP_05902715.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
gi|260858835|gb|EEX73335.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
Length = 153
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 57/154 (37%), Gaps = 1/154 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + +++ + ++ + + E+ ++ + +P
Sbjct: 1 MKIIDRYIYNSLFLPSIFGISIFTFIMMLNVIMEVMERLF-ASDLPFISIIDYLFYAIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q IP + ++V+ L+ T+E+V GI +++++ P + I+L + + +
Sbjct: 60 VLVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGIGLFRIIRPAFIFGIILTLIGLGLEI 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+ K + K +
Sbjct: 120 YVNPRALKKYKCTDKTNSSFKTKFIVRRKSFFDK 153
>gi|296274436|ref|YP_003657067.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
gi|296098610|gb|ADG94560.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
Length = 339
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 100/335 (29%), Gaps = 16/335 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + T L + +I L + + +I L A +P II +
Sbjct: 6 YLLSQFSNTFFPIFLVLFFITSIIFLVR-IASITSVITLNIFELGTLYAYNLPNIIFYTM 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V ++ L+ EL++ + G++ +L F+ + L+ + +++ +
Sbjct: 65 PISFFVAMVITLSKLSSEYELIVVTSFGLNPSNILKVFLPITFLISLSLLILSIGLIPKT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + +I Q + + + I K+ E +++
Sbjct: 125 KYLSQQMINQKTKEANFNIKASEFGQKFGDWLIYISKKDDKLYEEVKLFKTE---NKGTD 181
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
II + N LK + + + I++ + + +
Sbjct: 182 QFIIAKNARLNNDAGNLSFILKDGKAFYFEQDKINQIDYKVMHINDTLSESQITPFTN-- 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
++ ++ +F F ++ + + + R +
Sbjct: 240 ---------AYEYWKERINSDGDIAKFSFYVLTSIFPFISIYLVVAFGYFNPRYEKN-RS 289
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
VAY + S M Y I + + +
Sbjct: 290 VAYAVISVVMYYLISDPLTKSIGLLSIPSIIVFWT 324
>gi|194323556|ref|ZP_03057333.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
novicida FTE]
gi|208779047|ref|ZP_03246393.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
gi|194322411|gb|EDX19892.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
novicida FTE]
gi|208744847|gb|EDZ91145.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
Length = 283
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/294 (14%), Positives = 98/294 (33%), Gaps = 17/294 (5%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + K+ F+ I P +
Sbjct: 61 DTNMVTYNTHDLWFKTPDG------------FMNIANIEPTKGKAYGIRKFMVQDNKVRE 108
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
R I + + + + + K+ + A
Sbjct: 109 IRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISVAKVITIN 168
Query: 252 IIKKMSFS-----NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
++FS SN +F+ + PL L+ + L+A +S+ +RS+ +
Sbjct: 169 DNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSSTLIL 228
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 229 KLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|224531722|ref|ZP_03672354.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
gi|224511187|gb|EEF81593.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
Length = 329
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/329 (13%), Positives = 100/329 (30%), Gaps = 9/329 (2%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
+ DL E + + +P + L + NL+ +E+
Sbjct: 1 MLGDLFVNLLNYLEK-DIGFKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMRNEI 59
Query: 89 VISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSD 148
+ + G+S+ ++L P ++ S+ + N + LI+ +
Sbjct: 60 IGLFSCGVSLTRILRPIILISVFISAALFFFDNYLVIDTVARRDILIKNSIGDSRSIDKT 119
Query: 149 IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL 208
II K + + + + I D K++ R D + A NDK KL
Sbjct: 120 III-----RDLAREIYNIKSYDIDENTFSNLMIIIKDNKDEFQKRYDINKAEWKNDKWKL 174
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI-IKKMSFSNKSNIFHN 267
+ E+ I +N+ + + + + S + K+
Sbjct: 175 HDIREFVKVGKKIKENAYDVLDGTGIIKLEPDYIRTVMLSSKALNFTKLINWINFLKTEQ 234
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY--GIFSGFMLYTIITIM 325
+ L+ + L++ +V + I++ I + I I
Sbjct: 235 LNYSDALFDLLNRIFFSFRLILLSFTVGFIALALKKNIFILSLLNSIAFAVVYVISIVIF 294
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILI 354
G L A+ I + ++ +
Sbjct: 295 NFLADLGYLHIYVASSFTTIFFLIINFFV 323
>gi|328675789|gb|AEB28464.1| conserved membrane protein of unknown function [Francisella cf.
novicida 3523]
Length = 283
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 97/289 (33%), Gaps = 7/289 (2%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ V+ I+ I T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSITTIVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + K+ + + ++ ++
Sbjct: 61 DTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQ---DNKVREIRYAESATY 117
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
+ + + + + N+ N +F +
Sbjct: 118 INDASANVFNISKIIFPSNDGQKHIDIVTNMTNAVWSNPIPISVAKVITINDNDYLNFSQ 177
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ M SN +F+ + PL L+ + L++ +S+ +RS+ + + G
Sbjct: 178 LTSYM----LSNSQAKDSISLKFWQEVFQPLALMILILLSVPLSIGSTRSSTLILKLLLG 233
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 234 AFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|319956628|ref|YP_004167891.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
16511]
gi|319419032|gb|ADV46142.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
16511]
Length = 340
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/352 (12%), Positives = 104/352 (29%), Gaps = 22/352 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + K L L +++V +I + + + N L +P I
Sbjct: 6 RYILWSFAKAYLLVFLPFLLVVSLIFVI-QLSILSSRVNLEFRELVQLFGYMLPEIFFYT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + F + +E + ++G + ++L + +L +++ +
Sbjct: 65 VPLSLIAALANTFTRFSEENEFIALFSLGHTPGKVLRFMIPTLLLFTALLLVLSVMLYPQ 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ +Q + IS + G+ + E+ D +
Sbjct: 125 MKQKLNHFKRQKIAEAT---------LNISPNKLSQNFGSYHVFVESKDANDTYRNMVLF 175
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+A K+ + + + +
Sbjct: 176 NQGTKGAYQLFIAREGRVANDGKRFTLTLRNGTGETSDPKKVENLHYRELDIYQYPRNVY 235
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+S + + H+ + +LI + L + I A+++ R +
Sbjct: 236 QSIVTSREYWKKA-----LHDKGRRGKLLYLIFVSLTPILAFGIIAALTFYNPRYQRSLS 290
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
I I + + KSG + A VI ++L I +L ++
Sbjct: 291 IAVIFITALAVYLP----AAILQKSGSVPLFIAL---VIFLLALGIFLLRRR 335
>gi|319900104|ref|YP_004159832.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
gi|319415135|gb|ADV42246.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
Length = 633
Score = 52.4 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 4/270 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + + + + L +++ ++ A +
Sbjct: 5 KKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDELIGK-GLEMTVLAQFFFYSALTL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ F N EL+ +A GIS+ +++ +V L+ + N
Sbjct: 64 VPVSLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRSLIVFIALVSCVSFYFQNV 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L+ K + + + + + D
Sbjct: 124 IGPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIEGYNLYVKHKDR---KTGMLYDVLIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K + AD + K + G + S +N + F E
Sbjct: 181 NFEKGFENAQIIKADSGKLEMTADKQHLYLHLFSGEQFENLKSQNMNQQNVPYRREAFRE 240
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ A F + SN +
Sbjct: 241 KHAIIEFNSDFNMVDAGIMSNQSSSKNMRM 270
Score = 40.1 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 1/105 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
S S R ++ + + + I A + R + V +
Sbjct: 352 WNFKSVSISQTDDSLRRHYLSWHEKLTLSFACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + G + + L + +
Sbjct: 411 LIFIIYYIINNTGYKMARDGKWIVWTGMWTSTAILAPLGAFLTYK 455
>gi|332828499|gb|EGK01199.1| hypothetical protein HMPREF9455_02391 [Dysgonomonas gadei ATCC
BAA-286]
Length = 684
Score = 52.0 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/291 (8%), Positives = 74/291 (25%), Gaps = 10/291 (3%)
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ IV L R SE + ++ + + N A +
Sbjct: 189 MAVIVCDSALMRGSEDKTFLLLN--LYHGQQFANFRQADVNSTSSRNNNQFAPYSRENFK 246
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
+ N + D ++ + ++I + I + + + +
Sbjct: 247 EKEVIIPFNTGFDRMDESN-LEGTQISKNIVQLSHSIDSMSARLDSVNIRDRKIIGQHTY 305
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ N + + + + + ++ ++ + + S
Sbjct: 306 FSYRNTEAYQNRLKEADSLKVEKPKALQKKEQPAKIDFDSLLNSYSRDEMAQHLMSAASE 365
Query: 253 IKKMSFSNKSN------IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ ++ + + E + + + + I A + R +
Sbjct: 366 AENSRYNMLESTQKAGLQKNIRFHEVERHRKFTLSFACLIFFFIGAPLGA-IIRKGGLGM 424
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V + + Y I I + G+ + L + + +
Sbjct: 425 PVVVSVALFIVYYIIDNIGYKMARDGVWEAWQGMWLSSFALFPLGVFLTYK 475
Score = 47.4 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 3/226 (1%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L+ + + +L + + +V + L + IS A L
Sbjct: 1 MLKIKRLYTFVIQTFLPVFAMTFVICLFIVLMQFLWRYVEDLVGK-GLDISVLAELFLYA 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+I +P L+ +++ F NL EL+ +A G+S+ + + P ++ + I
Sbjct: 60 AFQLIPMALPLSLLLASLMAFGNLGERLELLSIKASGVSLLKAMKPLIILVAFISIGAFF 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + L+ K + + + H
Sbjct: 120 FQNEAMPRIQVKLRALLWSIKQKSPELDIPEGSFYSDIPNYNLYVKKKNRETKMLHEVMI 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + +I A + + L + Q +
Sbjct: 180 YDTSKGFDNMAVIVCDSALMRGSEDKTFLLLNLYHGQQFANFRQAD 225
>gi|15834847|ref|NP_296606.1| hypothetical protein TC0227 [Chlamydia muridarum Nigg]
gi|270285013|ref|ZP_06194407.1| hypothetical protein CmurN_01133 [Chlamydia muridarum Nigg]
gi|270289036|ref|ZP_06195338.1| hypothetical protein CmurW_01188 [Chlamydia muridarum Weiss]
gi|301336411|ref|ZP_07224613.1| hypothetical protein CmurM_01210 [Chlamydia muridarum MopnTet14]
gi|7190266|gb|AAF39099.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 354
Score = 52.0 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/368 (13%), Positives = 115/368 (31%), Gaps = 23/368 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKTT++ L + + + L EI + + + + + + A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFRVTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S ++ P ++ S +L F
Sbjct: 58 YLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPILITSGILCCFNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + I K I
Sbjct: 118 SELASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHN 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + + V + + T+ ++ +
Sbjct: 178 QEISNIGFVETIIPDVNKDSVQAKNVLVIS------KVPLFSEARTSNPNEFYLETLDEL 231
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-----FLIVIPLMLVAMTLIAASVS 295
+ + + M + + + + I L+ MT ++
Sbjct: 232 FIPKITATLFAGKSYMKARTDYLPWKQLIQDVHLHLAEILRRVAIGLLCSTMTFSGLALG 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISLSIL 353
R +P + + + I GK+ + + L P +L+ +
Sbjct: 292 TYKPRFRKP-------VLIYVLFPVLNLIFLIVGKNTTHPISALMLFLFPQLLSWLIFSW 344
Query: 354 ILLQKEDG 361
+ ++ G
Sbjct: 345 RIYKENQG 352
>gi|329943108|ref|ZP_08291882.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
gi|332287690|ref|YP_004422591.1| conserved hypothetical membrane protein [Chlamydophila psittaci
6BC]
gi|313848264|emb|CBY17265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
RD1]
gi|325506627|gb|ADZ18265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
6BC]
gi|328814655|gb|EGF84645.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
gi|328914943|gb|AEB55776.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
Length = 357
Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/363 (12%), Positives = 115/363 (31%), Gaps = 10/363 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S + P ++ S +
Sbjct: 58 YLLPFILPISCFISAFTLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK I
Sbjct: 118 SELASICRFQTCKEIANMAMTSPTLLLQTLQKKESNRIFITVDHCAKSKFDNVIIALKRD 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D ND V+ + VV + ++ + ++ +
Sbjct: 178 KEIANVGLIKTIIPDV-----ANDTVQARGVVMISKLPSTLTDQRSSNSKEYYIETLDEM 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + M + ++ + L + + L+ +++
Sbjct: 233 LIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSRTYLPETLRRIGIGLLCITLTYSGMV 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVILTISLSILILLQK 358
+ I + I I+ GK+ + + + P +++ + + ++
Sbjct: 293 LGTYKPRFRKSITLYCIFPVIDLILLIVGKNTSSLFPALMLFIFPQVVSWIVFAIKAYRE 352
Query: 359 EDG 361
G
Sbjct: 353 NRG 355
>gi|33242365|ref|NP_877306.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
gi|33236876|gb|AAP98963.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
Length = 357
Score = 52.0 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 115/367 (31%), Gaps = 23/367 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P V +F L+ + + RA G S ++ P ++ S +
Sbjct: 58 YLLPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRYQTCKEIANMAMTSPALLLQTLQKKENNRIFIAVDHCAKSKFDNV-----IV 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + + + + D VK K VV + ++S+ + ++ +
Sbjct: 173 ALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDEL 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------FLIVIPLMLVAMTLIAAS 293
+ + + + + ++ + + I + + +T
Sbjct: 233 LIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHPHLPETLRRVAIGFLCITLTYAGMI 292
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSI 352
+ + R + I F+ + I+ GK+ L + L +
Sbjct: 293 LGIHKPRFRK-------SIALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVF 345
Query: 353 LILLQKE 359
+E
Sbjct: 346 AARAYRE 352
>gi|15618904|ref|NP_225190.1| hypothetical protein CPn0996 [Chlamydophila pneumoniae CWL029]
gi|15836527|ref|NP_301051.1| hypothetical protein CPj0996 [Chlamydophila pneumoniae J138]
gi|16752031|ref|NP_445397.1| hypothetical protein CP0859 [Chlamydophila pneumoniae AR39]
gi|4377325|gb|AAD19133.1| CT839 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189771|gb|AAF38648.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979369|dbj|BAA99203.1| CT839 hypothetical protein [Chlamydophila pneumoniae J138]
Length = 357
Score = 51.6 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 115/367 (31%), Gaps = 23/367 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT + L + + + L EI + + + L A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P V +F L+ + + RA G S ++ P ++ S +
Sbjct: 58 YLLPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + + AK
Sbjct: 118 SELASICRYQTCKEIANMAMTSPALLLQTLQKKENNRIFIAVDHCAKSKFDNV-----IV 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + + + + + D VK K VV + ++S+ + ++ +
Sbjct: 173 ALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDEL 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------FLIVIPLMLVAMTLIAAS 293
+ + + + + ++ + + I + + +T
Sbjct: 233 LIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRRVAIGFLCITLTYAGMI 292
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAALIPVILTISLSI 352
+ + R + I F+ + I+ GK+ L + L +
Sbjct: 293 LGIHKPRFRK-------SIALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVF 345
Query: 353 LILLQKE 359
+E
Sbjct: 346 AARAYRE 352
>gi|325954392|ref|YP_004238052.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
gi|323437010|gb|ADX67474.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
Length = 500
Score = 51.6 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/247 (11%), Positives = 68/247 (27%), Gaps = 4/247 (1%)
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ + + I+ + Q+ + K D + + + D
Sbjct: 219 FLKLELFDGISYTEPLKNKSYEQRKRQENQTTKFDSLHYFIDISAIVDKQTQQDPGNFYK 278
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ + ID K + A + + + +
Sbjct: 279 NLKGKDLKLLIDSVQKTNQEFYLNNAKSNYISSYYYSNKMAELKQEKVKIEQPLVQFEQL 338
Query: 234 MDGFQKFSEQFASRSF---YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
Q S A + + + + + + R +Y + + I
Sbjct: 339 EKNIQIISLNSAIANIDRDIQNNEFQIEEDNARKKYFSRINLHYYRNWSYAITCIIFFFI 398
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + + + V I + I ++ KSG L P +A + +
Sbjct: 399 GAPLGAIVKK-GGIGMPVIMSIIVFIFYFIINFTAENLTKSGNLHPFLSAWAANFIFLPF 457
Query: 351 SILILLQ 357
S+L+LL+
Sbjct: 458 SVLLLLK 464
Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/261 (11%), Positives = 69/261 (26%), Gaps = 3/261 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K ++ + + V + ++ L
Sbjct: 1 MIKKLDGYVLKTFIGPFFFIFSILFFIFIVQFAWQEMDKYVGK-GLDWLTIGELIFYMGI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+IQ ++P L+ +I+ F EL +A G+S+ ++L+ V LL I
Sbjct: 60 NVIQLVLPLTILLGSIMTFGGFGERYELAAMKASGLSLVRILSSVFVLVALLSIGLYHFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ ++ + + + + D
Sbjct: 120 DKMMPYSQRKARQIMFSVIEAKPTLQITEGVFSNNIPGFSMKVNRVDG--DNSEKLTDIF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K + + + +K + P + + +
Sbjct: 178 IHQQLSKTVLDENGNDINIEQDPLTIIAEKGILQVDKHNPRFLKLELFDGISYTEPLKNK 237
Query: 241 SEQFASRSFYEIIKKMSFSNK 261
S + R + K S
Sbjct: 238 SYEQRKRQENQTTKFDSLHYF 258
>gi|216263568|ref|ZP_03435563.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
ACA-1]
gi|215980412|gb|EEC21233.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
ACA-1]
Length = 333
Score = 51.2 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/333 (15%), Positives = 108/333 (32%), Gaps = 9/333 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
MIL+ + DL E N S+ + +P + L + NL+
Sbjct: 1 MILIILGDLFVNLLNFLEK-NISLKDIFYIYYLYLPKAFSDGVALSFLFAISNLIGNLSM 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+E++ + G+ + ++L P ++ S+ + + N + LI+ N
Sbjct: 60 RNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLVIDTVAKRDLLIKNSIGNNGS 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
II K + + + + I D K++ R D + A ++
Sbjct: 120 IDKTIII-----RDLAREIYNIKSYDIDENAFSNLMIIIKDSKDEFQTRYDINKAEWKDN 174
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI-IKKMSFSNKSN 263
K KL + E+ I +N+ + + + + S + K+
Sbjct: 175 KWKLYGIREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVMLSSKALNFTKLINWISFL 234
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY--GIFSGFMLYTI 321
+ + L+ + L++ +V + I++ I +
Sbjct: 235 KSEHLNYSDALFDLLNRIFFSFRLMLLSFTVGFIALALKKNIFILSLLNSIAFAVVYVIS 294
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I I G L A+ I + ++ L+
Sbjct: 295 IVIFSFLADLGYLNIYVASSFTTIFFLIINFLV 327
>gi|237752929|ref|ZP_04583409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375196|gb|EEO25287.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 344
Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/317 (9%), Positives = 90/317 (28%), Gaps = 6/317 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+ F+ + + L + V+ I + + S L +P ++ +I
Sbjct: 6 FLFQSFAQVFFPIFLVLFFIASVVIFIRIAG-VTFVVKISFLELLTLYFYTLPTMLFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V ++ L+ EL + A+G++ +++ F ++L + ++ +
Sbjct: 65 PLSFFVACVLGLSRLSFDYELPVLFALGMNPKKIVKIFFPIALLASVSLFVLSLILTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K + D ++ + G + + K
Sbjct: 125 DIAYRQFLEERKSSIDVNLQAGEFGQKLGEWLVYVQKGKNSTYENI-VLLSLQAKGSQKD 183
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ ++ + + L Y+ +++ ++ + S
Sbjct: 184 GLVFAKQANIGNVDGVMEAHLSDGKIYRKVSDGVER----ISFDEMILRSAVDFTGDGSV 239
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
E + + N + + L + + +
Sbjct: 240 GLVEYWNRAFYENSRQDKTKRNLSMYVLLSLFPLISLFYFPFLGVKNPRYQKNYTILQAM 299
Query: 308 VAYGIFSGFMLYTIITI 324
V G+F M +
Sbjct: 300 VVVGVFFALMYIVATYL 316
>gi|261749398|ref|YP_003257083.1| hypothetical protein BPLAN_316 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497490|gb|ACX83940.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 395
Score = 51.2 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 8/252 (3%)
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ + I D + ++ + + + +++ N
Sbjct: 137 NLFIFFYGKNLAINTILAEKGILIPNKKEDGFQIKLMKGFFYRDNPYEGKTYSYQMVHFN 196
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ F I+ KN + D+ + ++ ++ + ++ D N +
Sbjct: 197 SFIQSFKKPLIEYKNLDYYYDDSYKTLDTKKLMEKIHFLKKKNCQLYSDFQKLNYNSLFQ 256
Query: 234 MDGFQKFSEQFASRSF-------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ RS + ++ ++ H + + + P+ +
Sbjct: 257 KKKIFFKRSKNKKRSLLLHISILIDELQHQKKFLQNRKKHLAKYQFELQKKFTFPVTCII 316
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M LI A + R I + +T++TI ++ G+ + P A IP +
Sbjct: 317 MFLIGAPLGA-IIRKGGMGRPTLIAIIIFIIYHTLLTITQNQGEKAEIWPWIGAWIPNFV 375
Query: 347 TISLSILILLQK 358
LSI I +
Sbjct: 376 FFPLSIWITYKT 387
>gi|323344722|ref|ZP_08084946.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
33269]
gi|323093992|gb|EFZ36569.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
33269]
Length = 633
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 1/162 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L + K + + ++ + L + +++ S+ A ++
Sbjct: 5 KKLDIFIAKQFGLLFIGTFFICQFVLMMQFLWKSIDELVGK-GLSMEVMAQFFWYAGLML 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +++ F NL +SEL +A GIS+ Q ++ SI++ + N
Sbjct: 64 VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLIQAFRSLIIISIIISFSSFYFQNY 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+ + L K + +
Sbjct: 124 VGPTANMKIAQLWISMKQKSPELAIPEGIFYDGIPNSNLYVQ 165
Score = 42.0 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + L + I A + R + V + + Y +
Sbjct: 363 GDKLIREHRIEMISKFTLALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVLVFIVYYILD 421
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G+ + + I L+ + +
Sbjct: 422 NTGYRMARGGMWTIEFGKGLAPAVLIPLAAFVTYK 456
>gi|218679464|ref|ZP_03527361.1| putative permease protein [Rhizobium etli CIAT 894]
Length = 138
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 11 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 70 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDN 129
Query: 122 PIATS 126
+
Sbjct: 130 VVEPR 134
>gi|165919041|ref|ZP_02219127.1| putative permease [Coxiella burnetii RSA 334]
gi|165917236|gb|EDR35840.1| putative permease [Coxiella burnetii RSA 334]
Length = 370
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/332 (12%), Positives = 111/332 (33%), Gaps = 3/332 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + +VPL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAA-AGKITVKAVMEIMSLQVPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K + +S+ Q + G + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD A Y+ ++ R ++ + + +
Sbjct: 181 TAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + +A + + I +PL + L+ +S R +
Sbjct: 241 AMDITGRVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPRKGK 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
++ + + + +++ + G++
Sbjct: 300 FAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 330
>gi|153209375|ref|ZP_01947370.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|120575375|gb|EAX31999.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
Length = 370
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/332 (12%), Positives = 111/332 (33%), Gaps = 3/332 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + +VPL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAA-AGKITVKAVMEIMSLQVPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K + +S+ Q + G + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD A Y+ ++ R ++ + + +
Sbjct: 181 TAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + +A + + I +PL + L+ +S R +
Sbjct: 241 AMDITGRVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPRKGK 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
++ + + + +++ + G++
Sbjct: 300 FAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 330
>gi|161829745|ref|YP_001596892.1| putative permease [Coxiella burnetii RSA 331]
gi|161761612|gb|ABX77254.1| putative permease [Coxiella burnetii RSA 331]
Length = 370
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/332 (12%), Positives = 110/332 (33%), Gaps = 3/332 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + + PL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAA-AGKITVKAVMEIMSLQAPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K + +S+ Q + G + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLAQSE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD A Y+ ++ R ++ + + +
Sbjct: 181 TAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP 240
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + +A + + I +PL + L+ +S R +
Sbjct: 241 AMDITERVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVPLSEANPRKGK 299
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
++ + + + +++ + G++
Sbjct: 300 FAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 330
>gi|166154182|ref|YP_001654300.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|166155057|ref|YP_001653312.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335427|ref|ZP_07223671.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
gi|165930170|emb|CAP03654.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|165931045|emb|CAP06608.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 366
Score = 50.9 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 124/363 (34%), Gaps = 8/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I ++ N+++
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQTVLIFSSINRRAATLNNVFWIKGP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
TI K+ + + + E + K L + F K
Sbjct: 183 KTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVSLTQFFDMKEFPELEFSYYDNPFSKIF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAASVS 295
SF ++ + + + FY++++ PL+ +A +++A +
Sbjct: 243 ITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLISPLLCIAAVILSAHLC 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + + + + + ++ + +L + IP + +++
Sbjct: 303 LRFHRLPKITWAYLVPLGTINIFFVVLKAGMVLANNSVLPALQVMFIPAGFMLLITLYAY 362
Query: 356 LQK 358
+
Sbjct: 363 RKL 365
>gi|226320855|ref|ZP_03796407.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
gi|226233721|gb|EEH32450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
Length = 333
Score = 50.9 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 9/333 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
MIL+ + DL E N + + +P + L + NL+
Sbjct: 1 MILIMLGDLFVNLLNYLEK-NIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSM 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+E++ + G+ + ++L P ++ SI + + N + LI+ +
Sbjct: 60 RNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDTIARRDVLIKNSIGDS-- 117
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
I K + + + + I D K++ R D + A ++
Sbjct: 118 ---RSGDKTIIIRDFAREIYNIKSYDIDENTFANLMIIIKDNKDEFQTRYDINKAEWKDN 174
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI-IKKMSFSNKSN 263
K KL + E+ I +N+ + + + S + K+
Sbjct: 175 KWKLYGIREFVRVDKKIKENAYDVLDGTGIIKLAPDYIRTVMLSSKALNFTKLINWISFL 234
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY--GIFSGFMLYTI 321
F+ L+ + L++ +V + I++ I +
Sbjct: 235 KAERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKKNIFILSLLNSIAFAVVYVIS 294
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I I G L A+ I + ++ +
Sbjct: 295 IVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 327
>gi|255349243|ref|ZP_05381250.1| putative membrane transport protein [Chlamydia trachomatis 70]
gi|255503780|ref|ZP_05382170.1| putative membrane transport protein [Chlamydia trachomatis 70s]
gi|255507461|ref|ZP_05383100.1| putative membrane transport protein [Chlamydia trachomatis
D(s)2923]
gi|289525884|emb|CBJ15366.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
gi|296435470|gb|ADH17648.1| putative membrane transport protein [Chlamydia trachomatis E/150]
gi|296439187|gb|ADH21340.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
Length = 366
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 124/363 (34%), Gaps = 8/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLICPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I ++ N+++
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQTVLIFSSINRRAATLNNVFWIKGP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
TI K+ + + + E + K L + F K
Sbjct: 183 KTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVSLTQFFDMKEFPELEFSYYDNPFSKIF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAASVS 295
SF ++ + + + FY++++ PL+ +A +++A +
Sbjct: 243 ITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLISPLLCIAAVILSAHLC 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + + + + + ++ + +L + IP + +++
Sbjct: 303 LRFHRLPKITWAYLVPLGTINIFFVVLKAGMVLANNSVLPALQVMFIPAGFMLLITLYAY 362
Query: 356 LQK 358
+
Sbjct: 363 RKL 365
>gi|332976302|gb|EGK13159.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
Length = 467
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 42/123 (34%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ + + +P ++ ++P + ++VF L E+ + GIS
Sbjct: 31 IAAEGRLDVGLLFAIIGYNLPYFLELVLPLSFFIGLMLVFGRLYVDQEMAVLNGSGISRG 90
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
+L + +LL +F + G + ++ QQ + ++ +
Sbjct: 91 RLARLMIPFILLLFVFEAGLSLYGKPWGVRNSENIWQQQSLSSAFDLIRPQTFISSDDYH 150
Query: 160 QDI 162
+
Sbjct: 151 LYV 153
>gi|297170848|gb|ADI21867.1| hypothetical protein [uncultured verrucomicrobium HF0130_25O04]
Length = 243
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 8/232 (3%)
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
K + Q + + + + E
Sbjct: 14 WYFKEFDETKGQGRGVQVYSYDQNGSDSYRIRAKSATWNENGWLFKEGRFLG-----FPS 68
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIKMDGFQKFSEQ 243
K + + D + V + V + + + S ++
Sbjct: 69 AKGIPVPKSDGIGIDWEGNPVGFENVEQARASPRINKRFSALFLPLEEDDPFPHAALRQK 128
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ ++ E+ +S + N Y + + L + L ++ L +S
Sbjct: 129 PNTLNYGELGTLLSEYPRQNSAKLYPYKLRRAQLFWSGPSCLVAVLCGLALGLR-RKSTS 187
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + + Y T + G+ GI+ A+ +P +L I L+I ++
Sbjct: 188 AGRIAGFSLLGMLFFYLAKTFCDALGEKGIVSEWLASGVPYLLVIILAICLM 239
>gi|319760185|ref|YP_004124123.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
gi|318038899|gb|ADV33449.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
Length = 371
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/355 (12%), Positives = 125/355 (35%), Gaps = 10/355 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + L L+ ++ L +I +G + + +P +
Sbjct: 2 ILIRYIIKEVFRNQLIILILLFLVCICQKLIKI---VGVDNPIPVYLIFLHLTLNIPELG 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IPF + + + + +E++ + I+ + + + SI++ I +++ + +
Sbjct: 59 KLVIPFSLFLSVFITCYRFHLHNEILAMYSCAINRFFFVKSIFLYSIIVFIISLINVMWL 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ E++ + N K ++ + + FI K +I+ +
Sbjct: 119 SPYCEQLRYVTLSSINKNIYSIKLVEKKFLLMLSKHTVFFIKKIKNKNLQYIFIVKKNHH 178
Query: 184 IDKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I+ N + D + LK Y+ + + ++ +
Sbjct: 179 INGSNVCVIITANNGDVYNYSNNLKAITLKSGTYYEIHYDQLIFTNIYISDFSRYHTLID 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ + + F +I++ M+ S + + + + ++ M +IA + +
Sbjct: 239 YNMKSPQKGF-KIVEHMTISQLICHDSLPEKYIELNWRFTLLVSIIIMPIIALLLVINI- 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SN + I + + + +++ + ++ +++L+
Sbjct: 297 -SNGYFLNFVLAISLYILFFMLHILLRFSITLDYRDSMLYMGGVNVIYFIIALLM 350
>gi|15834846|ref|NP_296605.1| hypothetical protein TC0226 [Chlamydia muridarum Nigg]
gi|270285012|ref|ZP_06194406.1| hypothetical protein CmurN_01128 [Chlamydia muridarum Nigg]
gi|270289035|ref|ZP_06195337.1| hypothetical protein CmurW_01183 [Chlamydia muridarum Weiss]
gi|301336410|ref|ZP_07224612.1| hypothetical protein CmurM_01205 [Chlamydia muridarum MopnTet14]
gi|7190265|gb|AAF39098.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 366
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 122/363 (33%), Gaps = 8/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYILARFWLSLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ ++ P ++ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTVIRPLILSSTLVTLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI I K +K + I K N+++
Sbjct: 123 WLHPICEKISITKEHMDKGTLEKAQEKIPALYLKDQTVLIFSSINHKAATLNNVFWIKGP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
TI K+ + + + E + K L + F K
Sbjct: 183 KTIYSIKKLAFTTPSLPIGLEVSYFSEDENHEISLTQFFDMKEFPELEFSYYDNPFSKIF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAASVS 295
SF + + + + FY++++ PL+ +A +++A +
Sbjct: 243 ITGRDCSFSAFFQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLISPLLCIASVILSAYLC 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + + + + + + + +L + IP + + +++
Sbjct: 303 LRFHRLPKITWAYLVPLGTINIFFVFLKAGMVLANNSVLPALQVMFIPASVMLIITLYAY 362
Query: 356 LQK 358
+
Sbjct: 363 RKL 365
>gi|297519577|ref|ZP_06937963.1| hypothetical protein EcolOP_18177 [Escherichia coli OP50]
Length = 115
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPL 113
>gi|225551662|ref|ZP_03772606.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
gi|225371689|gb|EEH01115.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
Length = 333
Score = 50.5 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 9/333 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
MIL+ + DL E N + + +P + L + NL+
Sbjct: 1 MILIMLGDLFVNLLNYLEK-NIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSM 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+E++ + G+ + ++L P ++ SI + + N + LI+ +
Sbjct: 60 RNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDTIARRDVLIKNSIGDS-- 117
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
I K + + + + I D K++ R D + A ++
Sbjct: 118 ---RSGDKTIIIRDLAREIYNIKSYDIDENTFANLMIIIKDSKDEFQTRYDINKAEWKDN 174
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI-IKKMSFSNKSN 263
K KL + E+ I +N+ + + + S + K+
Sbjct: 175 KWKLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVMLSSKALNFTKLINWISFL 234
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY--GIFSGFMLYTI 321
F+ L+ + L++ +V + I++ I +
Sbjct: 235 KSERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKKNIFILSLLNSIAFAVVYVIS 294
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I I G L A+ I + ++ +
Sbjct: 295 IVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 327
>gi|91204094|emb|CAJ71747.1| hypothetical protein kustc1002 [Candidatus Kuenenia
stuttgartiensis]
Length = 578
Score = 50.5 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 9/278 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + + +T L IL+F+ + +I ++ I L +
Sbjct: 53 ILQRYVIREWFQTFWPSFLCFEILMFLGFVIQILHK-----GLDIIALKALIPHMFIQVA 107
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L + + L+ E++ +A GI + +++ P +V I+ FT+++ I
Sbjct: 108 PYSIPSALLTATTLTYGRLSADREIIAIQASGIHLRKIITPVLVIGIIFSFFTLVLSAEI 167
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L ++ +N + + P Q + ++ +
Sbjct: 168 LPRSLYQIKLLQERAINNILAGRLATFQKKVLMEPYQIYIGNVVDNINKDVTVIQYADDY 227
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQK 239
+ + L+K + ++ T G K
Sbjct: 228 VTDIIIAEEGSIEVNNEKNTIFLTLRKGEFIKPNYKKAEEVPRLGVFTETTFEIPMGKDK 287
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +++ K + ++ +
Sbjct: 288 ADFSTKHMTIFQLFKYNNEIDRELANSKEIPDNFEEAR 325
>gi|167949851|ref|ZP_02536925.1| permease YjgP/YjgQ [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 136
Score = 50.1 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
Q +++ ++F ++ + E F+ +V+PL+ + M ++ RS
Sbjct: 2 QPHMLPAWDLWAYVAFLKQNG-LSAAQYEVAFWSKLVVPLVTLVMLFLSIPFVFGPLRSV 60
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
V G G + + + G + A P +L + ++
Sbjct: 61 GIGQRVFTGAVVGTLFFMFNRVFTYLGVVYEFNALFTAAFPTLLFLLRGAVVF 113
>gi|222110917|ref|YP_002553181.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
gi|221730361|gb|ACM33181.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
Length = 363
Score = 50.1 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/333 (13%), Positives = 111/333 (33%), Gaps = 11/333 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K +T L+ + +V + L Q + + S ++ V + I+
Sbjct: 7 IRKELARTFGATLVVLVTVVMTMMLIRTLGQAS-RGSVNPSDVMLVMGFTVLGQLPTILS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V + + R SE+VI + G + LL P S + + + +
Sbjct: 66 LSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +L Q++ D + + + SN + FI + + +++
Sbjct: 126 RQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATNEPNRET 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ L + R + + G ++ A+
Sbjct: 186 VTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDPEAA-- 243
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
K + + R + + + I + L + ++ +V++ R+ + +V
Sbjct: 244 ----SIKTRDTWELVSDPQPRHQAELGWRIGMALAALNFVVLGLAVAVVNPRAGRSTSLV 299
Query: 309 AYGIFSGFMLYTIITIMKSF---GKSGILLPVA 338
+F+ + Y ++T+ +++ G+ G+L +
Sbjct: 300 F-ALFAFVVYYNLMTVGQTWIGVGRLGLLPFML 331
>gi|121594280|ref|YP_986176.1| permease [Acidovorax sp. JS42]
gi|120606360|gb|ABM42100.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 363
Score = 50.1 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/333 (13%), Positives = 111/333 (33%), Gaps = 11/333 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K +T L+ + +V + L Q + + S ++ V + I+
Sbjct: 7 IRKELARTFGATLVVLVTVVMTMMLIRTLGQAS-RGSVNPSDVMLVMGFTVLGQLPTILS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V + + R SE+VI + G + LL P S + + + +
Sbjct: 66 LSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +L Q++ D + + + SN + FI + + +++
Sbjct: 126 RQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATNEPNRET 185
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+ L + R + + G ++ A+
Sbjct: 186 VTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDPEAA-- 243
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
K + + R + + + I + L + ++ +V++ R+ + +V
Sbjct: 244 ----SIKTRDTWELVSDPQPRHQAELGWRIGMALAALNFVVLGLAVAVVNPRAGRSTSLV 299
Query: 309 AYGIFSGFMLYTIITIMKSF---GKSGILLPVA 338
+F+ + Y ++T+ +++ G+ G+L +
Sbjct: 300 F-ALFAFVVYYNLMTVGQTWIGVGRLGLLPFML 331
>gi|254514079|ref|ZP_05126140.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
gi|219676322|gb|EED32687.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
Length = 362
Score = 50.1 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 89/305 (29%), Gaps = 5/305 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y L TL + ++ + + + + R+P ++
Sbjct: 3 LRSYLGSDVLGHTLAVSSVLLAIILTGRFVKYLAEAAS-GKLAAEILLPVMFYRLPGFLE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + ++ + L SE+VI A G+ +L + + L+ + + I
Sbjct: 62 LLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLARFTLAPAFLIMLIVAGLSLFIT 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G L+ + Q + A I PE
Sbjct: 122 PQGAARSEALLNDPQALQGLQLLAAGRF--QPRGDDGTVTYAADIDPEAGDLRQVFLYAP 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ +A + V Y + T ++ F +F +
Sbjct: 180 KSADDERAVAGVTVARRGSVVVDEATGARYLELSHGYRFSGTPGRADYRVVSFGQFGQLL 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQF--YFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + + E + ++ + + LM+ + L+A S+S R
Sbjct: 240 PEEPSMARSEPVDAKPTRQLLESRDPEDRAALHWRLSVALMVPIVALLALSLSKTNHRRG 299
Query: 303 QPRII 307
+ +
Sbjct: 300 RYIKL 304
>gi|71064626|ref|YP_263353.1| hypothetical protein Psyc_0045 [Psychrobacter arcticus 273-4]
gi|71037611|gb|AAZ17919.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 416
Score = 50.1 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 1/136 (0%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
++ L + N IS + +P ++ I+P + ++VF L
Sbjct: 1 MMLGGRLIRYFG-IAAEGNLDISLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQ 59
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
E+ + A GIS +L + L + + G + ++ QQ
Sbjct: 60 EMAVINASGISRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDL 119
Query: 147 SDIIPWMQISNPQQDI 162
++ N +
Sbjct: 120 IRPNQFISSGNYHLYV 135
>gi|34557088|ref|NP_906903.1| hypothetical protein WS0675 [Wolinella succinogenes DSM 1740]
gi|34482803|emb|CAE09803.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 345
Score = 50.1 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/353 (11%), Positives = 104/353 (29%), Gaps = 17/353 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y F + + + VI + + S L +P +I
Sbjct: 4 LKKYLFGSFAQLFFPIFAVLFFISSVILFI-KIAGVTFVVKMSFGELFELYLYSLPTMIF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP +++ L++ EL + ++GI + F S+L+ +F +LV +
Sbjct: 63 FTIPVTFFSASVISLAKLSQEYELPVLFSLGIDPLRFSRLFFPLSLLVSLFLLLVSLALV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + K +I + ++ + E +
Sbjct: 123 PLSNEAYDRFL-----DHKKSSVNINLKPAEFGQKLGNWLVYVGDMDEGEKRYKEVVMFS 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
A A++ + + L+ + + + ++ + F E
Sbjct: 178 SNDLGRESFILAKEALVESMEGNLELKLFRGSAYFKEELHIKRVDYAQMLIRDSAFKEGG 237
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
AS K+ + + R + + + PL + + + + R +
Sbjct: 238 ASLGIMGYWKQ-ALGGEKGSDKVRRKLSSSILISLFPLASLFFIPL---LGIMHPRFQKN 293
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I +G + P+A + ++ + + + +
Sbjct: 294 YSYFYVIIATGIFYGLVHIASNHL-------PLAGIFLIPLIWLGVGYGLYRR 339
>gi|330982633|gb|EGH80736.1| hypothetical protein PSYAP_29478 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 204
Score = 49.7 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 4/203 (1%)
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
+Q + N + T D + ++ A A D +LK V +
Sbjct: 1 HRQGDEFIHINTVQPNGLMLGVTRYRFDDQRHMLTSSFAKEAHFKTDYWELKDVATTHFN 60
Query: 218 RIPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ +T ++ + S S + + N R F
Sbjct: 61 DGSTEVVNTPVERWDVALSPQLLSTVIMPPESLSISGLWSYAHYLADQG-LSNGRYWLAF 119
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ ++ P + VA+ L+A S RS V G+ GF I ++
Sbjct: 120 WTKVLQPAVTVALVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGF 179
Query: 335 LPVAAALIPVILTISLSILILLQ 357
P+ A L+P IL+L +
Sbjct: 180 PPLLAVLLPAAACALAGILLLRR 202
>gi|308189157|ref|YP_003933288.1| hypothetical protein Pvag_3723 [Pantoea vagans C9-1]
gi|308059667|gb|ADO11839.1| Uncharacterized protein [Pantoea vagans C9-1]
Length = 204
Score = 49.7 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 1/189 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + S+ +F+ K +++
Sbjct: 121 GPWSSRYQDEVTQNAKANPGAAAMAAGQFQTSSDGSAVLFVEDVKGNNFGNVFLAQLRPK 180
Query: 184 IDKKNKIIH 192
+ +
Sbjct: 181 GNARPSWCW 189
>gi|148244590|ref|YP_001219284.1| hypothetical protein COSY_0441 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326417|dbj|BAF61560.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
Length = 357
Score = 49.7 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/346 (12%), Positives = 102/346 (29%), Gaps = 4/346 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ L + ++VF L + + E + L + I I+
Sbjct: 2 RNTLVILSAVFIVISLVVFGNQLVVVVKESLE-EGIPVKDLLPLVGFNMIRDIVPILSLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L+ I+ L + SE VI ++G++ + I++ I V++ + ++
Sbjct: 61 LLLAIILSINKLYKNSEAVIMNSLGLNNKHFMVFIQPLVIVIVIVIVILTTVVVPWSKQQ 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDFTSITIDKKN 188
+I K+ + + N F E T
Sbjct: 121 KDLIINHSKNISKFSFIKEREFQEFKNGDIIFFASKVSNFNNSKEQNMEGIFIYTFINNE 180
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+I + + ++ ++ + + Q
Sbjct: 181 PVIILAKQAKKYTNLNTNSVYLRLKNGTNYHGFILDTKKKILNFNLYDIQIIDGNMKKLI 240
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
I + + + +F + I PL ++ ++ + + S++ + V
Sbjct: 241 SKVIKVESKSTFELFFSRKLTEIAEFQWRISQPLSILILSALGVLLG-RTSQNGGRNLGV 299
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
G+ + + I KS + G LP+ ++ + L +
Sbjct: 300 LIGVVVFILYNNALLISKSVLERGESLPIIGLWWVHLVMLLLIFIF 345
>gi|297518682|ref|ZP_06937068.1| hypothetical protein EcolOP_13658 [Escherichia coli OP50]
Length = 80
Score = 49.3 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL + M L+A S RS + V GI GF+ Y + I + P+
Sbjct: 1 QPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIG 60
Query: 340 ALIPVILTISLSILILLQK 358
AL+P +S+ +L++K
Sbjct: 61 ALLPSASFFLISLWLLMRK 79
>gi|237805191|ref|YP_002889345.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273491|emb|CAX10407.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 366
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 124/363 (34%), Gaps = 8/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I ++ N+++
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQTVLIFSSINRRAATLNNVFWIKGP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
TI K+ + + + E + K L + F K
Sbjct: 183 KTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVSLTQFFDMKEFPELEFSYYDNPFSKIF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAASVS 295
SF ++ + + + FY++++ PL+ +A +++A +
Sbjct: 243 ITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLISPLLCIAAVILSAHLC 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + + + + + ++ + +L + IP + +++
Sbjct: 303 LRFHRLPKITWAYLVPLGTINIFFVVLKAGMVLANNSVLPALQVMFIPTGFMLLITLYAY 362
Query: 356 LQK 358
+
Sbjct: 363 RKL 365
>gi|152993423|ref|YP_001359144.1| hypothetical protein SUN_1840 [Sulfurovum sp. NBC37-1]
gi|151425284|dbj|BAF72787.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 341
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 44/341 (12%), Positives = 98/341 (28%), Gaps = 18/341 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L + +++ ++ L + + + +L + +P II I
Sbjct: 7 YISSNFTKAFLTIFIPFFLIISLVYLV-KISSLTAQIQINFLELLLLYSYSLPNIIFYTI 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L++ +EL+ A+G+ ++L ++ IL + +
Sbjct: 66 PLSFIAAVTNTLMKLSQDNELIALYALGLKAKKVLRSILLLGILFSVLLSTLSFLGIPIS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+++ ++ + +IIP +K + K
Sbjct: 126 KQLYNAFKEK---KKTEATLNIIPGKLGQKFGDYYIYVKEKDEKSKLFHDMVIYNRTKKD 182
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ L Y Y D QK+ F
Sbjct: 183 AEQFFSSKQGQLNRDKLVASLLLKEGYGYTYTKNKLQQAKYKSLEVFDSKQKYRFHFQDI 242
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
Y +R ++L V + ++++ L+AA + I
Sbjct: 243 VSYW---------ALIKTDKHRMGRALFYLFVSLIPILSVYLVAAFAMINPRYQANYSFI 293
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ + I + I S K G + + I + +
Sbjct: 294 IIFSITLS-----LYLIASSLEKWGDIPALILTAIVIFIFG 329
>gi|78777193|ref|YP_393508.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
gi|78497733|gb|ABB44273.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
Length = 339
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 43/357 (12%), Positives = 109/357 (30%), Gaps = 24/357 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y + L L + ++ L + +I A L +P
Sbjct: 1 MKIVQNYIRESVSILFLSIFLPLFSIASIVFLI-KLATYTAVIQLTIFEMAKLFFFMLPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P V + F L+ +E+V+ A+GI ++ + ++ L +
Sbjct: 60 LLFYTLPISFFVAITLALFKLSNDNEIVVLFALGIRPKLIIKTVLKPALFLCAILLFNFF 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + K ++ + ++ +N + D
Sbjct: 120 VLFPH-----AKTLSSNFISYKKSEAKFNLSASEFGHKFGEWLLYIGKDNQNETYSDVIL 174
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ +++ R I + ++LK Y D +
Sbjct: 175 FNKKQDEEVLIRAKNAQIINDSGILRLKLTSGEGYSYSDEKFTQINFETMFINDTMKTDL 234
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+++ + Y + + + + I+ L V +AA++ + +R
Sbjct: 235 DKYETPMEYWLPE----------APSSKKRKMLISNILFSLFPVLSIFLAATIGIVHARH 284
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ +I + + + + L+ + AL+ + L IL +K
Sbjct: 285 QKGKIYLFMFLGIILYY--------TLAVTLQLIIGSYALLVLAFGWLLGTYILYKK 333
>gi|15605573|ref|NP_220359.1| hypothetical protein CT838 [Chlamydia trachomatis D/UW-3/CX]
gi|76789583|ref|YP_328669.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
gi|237803270|ref|YP_002888464.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|255311679|ref|ZP_05354249.1| putative membrane transport protein [Chlamydia trachomatis 6276]
gi|255317980|ref|ZP_05359226.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
gi|3329309|gb|AAC68435.1| hypothetical protein CT_838 [Chlamydia trachomatis D/UW-3/CX]
gi|76168113|gb|AAX51121.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
gi|231274504|emb|CAX11300.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436394|gb|ADH18568.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
gi|296437325|gb|ADH19495.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
gi|296438253|gb|ADH20414.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
gi|297140754|gb|ADH97512.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
gi|297748966|gb|ADI51512.1| Hypothetical protein CTDEC_0838 [Chlamydia trachomatis D-EC]
gi|297749846|gb|ADI52524.1| Hypothetical protein CTDLC_0838 [Chlamydia trachomatis D-LC]
Length = 366
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 124/363 (34%), Gaps = 8/363 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I ++ N+++
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQTVLIFSSINRRAATLNNVFWIKGP 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
TI K+ + + + E + K L + F K
Sbjct: 183 KTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVSLTQFFDMKEFPELEFSYYDNPFSKIF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ------FYFLIVIPLMLVAMTLIAASVS 295
SF ++ + + + FY++++ PL+ +A +++A +
Sbjct: 243 ITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLISPLLCIAAVILSAHLC 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + + + + + ++ + +L + IP + +++
Sbjct: 303 LRFHRLPKITWAYLVPLGTINIFFVVLKAGMVLANNSVLPALQVMFIPAGFMLLITLYAY 362
Query: 356 LQK 358
+
Sbjct: 363 RKL 365
>gi|313682233|ref|YP_004059971.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
16994]
gi|313155093|gb|ADR33771.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
16994]
Length = 340
Score = 49.3 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 45/340 (13%), Positives = 108/340 (31%), Gaps = 16/340 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L + VI + + ++S A L VP ++
Sbjct: 4 LRRYILSNLSILFFSIFLPLFAIASVIFMI-KLATYTAVIQITLSEMAKLYLFVVPELLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P +V + + L+ +E+V+ ++GIS + V ++LL + + +
Sbjct: 63 YTLPIAFVVGGALALYRLSNDNEMVVVFSLGISPLFVARILAVPALLLSLLLFVNFVVVT 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ I + +++ + + I P++ ++ D
Sbjct: 123 PYIKIISANFLEKKRAEAKFNLGASEFGHHFGDWMLFINKN----DPQSRVFGDVILFNK 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K++I+ + D I ++L+ Y I + D
Sbjct: 179 SMKDEILIKADKAELINKQGVLQLRLDNGVSYSYDNILLRTMLFKTGYINDK-------- 230
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S ++ + + +N R +F ++ L + + ++ + +R +
Sbjct: 231 --LSTDPMVYRNTLDYWTNNELRERKTQRFITNTLLSLFPLISVFLMIALGIVHARHQKR 288
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
I + S Y I + + + V + +
Sbjct: 289 WIYLWL-FLSIVGFYAAAIITQQWLGFHTIWVVTLVWLII 327
>gi|289805150|ref|ZP_06535779.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
PL + M L+A S RS + V GI GF+ Y + I + P
Sbjct: 1 YFPSPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPP 60
Query: 337 VAAALIPVILTISLSILILLQK 358
+ AL+P +S+ ++L+K
Sbjct: 61 IVGALLPSASFFLISLWLMLRK 82
>gi|270295684|ref|ZP_06201885.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274931|gb|EFA20792.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 617
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 75/256 (29%), Gaps = 4/256 (1%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ + + + L ++M ++ A ++ +P L+ +
Sbjct: 3 FMGTFFICLFIFMMQFLWRYVDEMVGK-GLEMTVLAQFFFYSALSLVPASLPLAILLAAL 61
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ F N EL+ +A GIS+ +++ P ++ + + N I + L+
Sbjct: 62 ITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQTKLWTLLI 121
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
K + + + + + + D +K + +
Sbjct: 122 SMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNR---KTGMLYDVLIYNFEKGFENAQIIKS 178
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
D + K + G + S +N + F E+ A F +
Sbjct: 179 DSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFREKHAIIEFNSDFNMV 238
Query: 257 SFSNKSNIFHNYRAET 272
SN ++
Sbjct: 239 DAGIMSNQSNSKDMRM 254
Score = 39.7 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 24/240 (10%), Positives = 62/240 (25%), Gaps = 9/240 (3%)
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + + + N D D +SN + + ++ +
Sbjct: 209 NMNQRNVPYRRETFREKHAIIEFNSDFNMVDAGI---MSNQSNSKDMRMLQADIDSMKLQ 265
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + K + ++ D +K++K + +S +
Sbjct: 266 NDSVGRGYYKEAMAGTYKVTASLSKEDTLKIEKA-----YLGEYNVDSLYNVATLMQKQK 320
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S SF+ R T ++ + + L + I A +
Sbjct: 321 VISTAVSRAESAGSDWSFKSFNISQTESSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-G 379
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + V + + Y I + G + + L + +
Sbjct: 380 IIRKGGLGMPVVVSVLIFIIYYIINNTGYKMARDGQWVVWMGMWTSTAVLAPLGAFLTYK 439
>gi|254457924|ref|ZP_05071351.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
gi|207085317|gb|EDZ62602.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
Length = 339
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 33/338 (9%), Positives = 91/338 (26%), Gaps = 17/338 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y L + + VI + + ++ L +P I+
Sbjct: 4 LRKYIINNLYMIFLSMFMPLFAIASVIFMI-KLATYTAVIQLTLWDMVKLYLFVLPEILF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + + F L+ +E+V+ A+GI ++ + LL + +
Sbjct: 63 YTLPLTFFIAATLSLFRLSTDNEMVVLFALGIHPKFIIKTLFKPAALLSALLMFNFLVLF 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + K S + I +D + T
Sbjct: 123 PHATTLSSNFVSYKKSEAKFNLSASEFGHSFGDWLLY-------------IGKDNENETY 169
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K ++ I + + I + S + ++D +
Sbjct: 170 SDVILFNKNKKEEIIISAKRAEIINDAGILRLKLIEGEGYSYSKEEFSQIDFDTMYINDT 229
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + ++ + L+ + ++ +++ V + +
Sbjct: 230 MRTDLAVYRTPLEYWLSNDRKESKTHMMITDTLLSLFPLISLFLVVSIGVVHVRHQKGRI 289
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + G+ Y ++ + V +
Sbjct: 290 YLYLFLGVLL---YYGATLGLQKSLVYYTIPTVVITWL 324
>gi|154148987|ref|YP_001406533.1| YjgP/YjgQ permease [Campylobacter hominis ATCC BAA-381]
gi|153804996|gb|ABS52003.1| putative permease, YjgP/YjgQ family [Campylobacter hominis ATCC
BAA-381]
Length = 340
Score = 48.9 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 43/350 (12%), Positives = 104/350 (29%), Gaps = 26/350 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y F +L T +++ +I ++ ++ L +P I+
Sbjct: 6 KYLFSNFLSTFASLFSTLFLIMSIIFFL-QIARITSFVEINLYELTKLYLFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP V + F L++ +E ++ +G S ++ F+ + ++ + +L+ +
Sbjct: 65 IPISFFVALAMSLFRLSKENETIVLFTLGYSSEKIARFFLFLAFIVSVSMLLISLFMMPL 124
Query: 127 GEKIGIDL--IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + + ++ N + + S+ D ++
Sbjct: 125 AENLKDNFVSYKKISANLNIKSSEFGQKFSDWLVFIDDQKETNTGSIYENLILYHPKNKT 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ I+ N +KLK Y + I + +
Sbjct: 185 SDERIILASSGEIANENSNFSLKLKNGKAYTNDEKKWHISYFDELIIRTVQKDKIKENGG 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
N + + + + + + PL + A S + R +
Sbjct: 245 I------------LGYWKNEKNASKQLSIYVLVSLFPLASIYF---AVSFGIVTYRYEKG 289
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F + +I I P+ A + + + LS +
Sbjct: 290 FIYIGI-FGVLFCYFAMIMIFAK-------QPLLAIPLTFFIFLILSYIF 331
>gi|269963274|ref|ZP_06177606.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831989|gb|EEZ86116.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 235
Score = 48.5 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 48/158 (30%), Gaps = 3/158 (1%)
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + +L + + + F ++ R + +
Sbjct: 57 MFSSSGEVKELSDGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQREVKQKGRDWE 116
Query: 258 FSNKSNIFHNYRAETQF--YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+++ + E Q + I + + + +T++ +S R + + I
Sbjct: 117 AYPTADLIGHPDPEAQAELQWRISLFVCIPLLTMLVIPLSAVNPRQGRFAK-MGPAILIY 175
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ I+ KS + G + + + ++IL
Sbjct: 176 LAYFLAISATKSALEDGAIPATIGMWPINAMLLIVAIL 213
>gi|319941842|ref|ZP_08016164.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
3_1_45B]
gi|319804775|gb|EFW01642.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
3_1_45B]
Length = 379
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/351 (8%), Positives = 103/351 (29%), Gaps = 13/351 (3%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
L ++ V ++ M + L + + ++
Sbjct: 11 LANLAGAVFTVLFTIVLAVAMVRFL----NMAAGGSIEHGTVVQLVLYNALVNLPPLLAA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAI-GISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + +E+V+ + G SI + P V ++ + + L+ I+
Sbjct: 67 SLFIATLMTLMRSWQDNEMVVWFSSGGRSILSWIEPTVKFALPIVVVIALLSIVISPWAR 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L D +++ ++ F+ + + K++
Sbjct: 127 AETDRLRNSVSAREDVNAIAPGRFIEAMGGKRVFFVESAEEGGNQVRNVFMAEGDWGKES 186
Query: 189 KII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + ++ + V L Y+ + +++
Sbjct: 187 VVTAEKGTIEVNAEGDRYVVLGNGRRYEAQTDSGKTRIVEFGSYGVRLDIRIDRAFASTK 246
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ I + + + + P + + L+A +S R+ + +
Sbjct: 247 TSSMPIALL------IASPTPDHQAELLWRFSWPAAALLLALLAIPLSCTSPRAGR-SLN 299
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + ++I+++ + L + + + L++++ +++
Sbjct: 300 LLMAALVFILYLNALSIVETKIEQQALTFWSGYTVLNGSLLILTVVLFIRR 350
>gi|109947019|ref|YP_664247.1| hypothetical protein Hac_0413 [Helicobacter acinonychis str.
Sheeba]
gi|109714240|emb|CAJ99248.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 356
Score = 48.5 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 45/341 (13%), Positives = 99/341 (29%), Gaps = 7/341 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F + F L + ++ L + + S L +P I I
Sbjct: 15 RYLFMAVSQVFFSFFLVLFFISSIVLLIS-IASVTLVIKVSFLDLVQLFLYSLPGTIFFI 73
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + L+ EL++ ++G+S ++ FV SIL+ ++ + +
Sbjct: 74 LPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPT 133
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + Q KD D +++ + +++ +
Sbjct: 134 SKSAYYGFLHQKKDKIDINIRVGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQE 191
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + + + + K + G + L++ K+ F +
Sbjct: 192 SFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLKSFNANDASYLQ 251
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ Y K +F +N R I++ L +A + + R
Sbjct: 252 GTDYLGYWKRAFGKSANKSQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWS 307
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
G + I + P A +L
Sbjct: 308 YFYVLGAVGIYFLMVHVISTDLFLMTFIFPFIWAFASYLLF 348
>gi|209363910|ref|YP_001424259.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
gi|207081843|gb|ABS76872.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
Length = 372
Score = 48.2 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 43/335 (12%), Positives = 112/335 (33%), Gaps = 3/335 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAA-AGKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + + + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLFALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K + +S+ Q + G + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLA 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ AD A Y+ ++ R ++ + +
Sbjct: 180 QSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S + +A + + I +PL + L+ S+S R
Sbjct: 240 TSPAMDITGRVDAMPTSKLWHLHSKD-LKAAAELQWRIAMPLSVWLFALLIVSLSEANPR 298
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ ++ + + + +++ + G++
Sbjct: 299 KGKFAQMLP-AVLIYIGYANFMFLGRTWIEDGVIS 332
>gi|329890121|ref|ZP_08268464.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
gi|328845422|gb|EGF94986.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
Length = 342
Score = 48.2 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/322 (11%), Positives = 103/322 (31%), Gaps = 5/322 (1%)
Query: 39 QMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI 98
++ S+ L +P +I I+P V ++ L R EL + A G+S
Sbjct: 2 EVIVERGQSVWVMVKLTLLALPQLIAVILPIGLFVGALIALTRLQREQELTAAYAAGVSR 61
Query: 99 WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
W L+ P + ++++ + ++LV + ++ G + + + ++Q +
Sbjct: 62 WALIRPALQIALIVTVISLLVNVFVQPWAQREGRRQAFAIRTDLAALLVEEGRFVQGPDG 121
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--QY 216
++ +++ + + + + ++ + Y +
Sbjct: 122 LTVYVQQIEQNGLMKNLFVYLDNGKTVTTWDAETARFGRVDGLPVLTMQNGSMQRYSSRE 181
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-SFSNKSNIFHNYRAETQFY 275
+ + ++ ++ + + ++ + + AE
Sbjct: 182 VLNQLSFDQQVFDLSPYAKTSERIRFKPSDLWLTDLFDPTPALLETAGTRGELAAEGHSR 241
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + +AA + FSRS I + ++ +G L
Sbjct: 242 LASPLYALAAMAFALAAILGGAFSRSGYAGRIARAAGAFLVLRVIGYGLVAGSAWNGALN 301
Query: 336 PVAAALIPVILTISLSILILLQ 357
+ + + L++ IL +
Sbjct: 302 VLQ--YVVPLAATFLALRILFR 321
>gi|330443789|ref|YP_004376775.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
gi|328806899|gb|AEB41072.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
Length = 357
Score = 47.8 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 116/363 (31%), Gaps = 10/363 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKT L+ + + + L EI + + + + LAA ++P
Sbjct: 1 MP-ILWKVLIFRYLKTILFCASSLIFISIISSLQEIVVYIAK--DVPYATVFRLAAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ RA G S ++ P + SI +
Sbjct: 58 YLLPFILPASCFISAYTLFKGLSDNNQITFLRASGASQGIIIFPILTISIAICCANFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + + S + AK +
Sbjct: 118 SELASICRYKSCKEIANMAMSSPPLLLQTLQKREDSRVFIAVDHFAKSKFDNVIVALKRD 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D D D V+ K VV + T+ ++ Q+
Sbjct: 178 DTISDVGIIKAIIPD-----SEADTVQAKDVVYISKLPSSLSTPYTSPAQEYYIETVQEL 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + M + + + I L A+ L+ +++
Sbjct: 233 LIPKVTATLFSGKSFMKSRTDYLTWKQLVRQAFYRTYIPETLRRAAIGLLCFTLTYSGIV 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISLSILILLQK 358
+ F F + ++ GK+ + L P I++ + I ++
Sbjct: 293 IGTYKPRFRKTHFLYFTFPILDLVLLIVGKNTKTTFMAFMFFLFPQIISWLVFIYRSYRE 352
Query: 359 EDG 361
G
Sbjct: 353 NRG 355
>gi|11465471|ref|NP_045138.1| hypothetical protein CycaCp121 [Cyanidium caldarium]
gi|6466374|gb|AAF12956.1|AF022186_79 unknown [Cyanidium caldarium]
Length = 397
Score = 47.8 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/374 (10%), Positives = 103/374 (27%), Gaps = 28/374 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y FK + L+ + + + + + + +PL
Sbjct: 24 ILDSYLFKSLVLPFLFCWVSFVFIELSVGCVNQL-MSDLSSGLPLEISLQILLLYLPLYA 82
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + ++ F N +++L+ IS +L ++ + + T + I
Sbjct: 83 YFALPITSFFSGLISFRIKNYSNQLLGVYITSISFSRLFRSVLIFTSAICGTTWCISEII 142
Query: 124 ATSGEKIGIDLIQQ-----------------------WKDNGDKQKSDIIPWMQISNPQQ 160
L ++ + K
Sbjct: 143 IPVSSNSLQVLHRKASLCARNSICSETSSGIFTNYYNSQSKKAPLKELKGVLYIKHFNHL 202
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ + ++ + F + + + + ++ I D K V +
Sbjct: 203 NAYQLIYLDFNNENLKQLFLADSAKFDHFSRNWLFENMHIFSFDYDKELFVDSFNINMNL 262
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ + L + ++ Q + S + + +
Sbjct: 263 CNLSILDLKLNAVINKSQFSPFWMNAASIKMY----KELSHLKTYSKSWRKLSLRLYQKY 318
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ ++ L + + R + GI F Y + +S GI+ +
Sbjct: 319 FTPISSIFLYSTGALMGSFRYKTQYLSFFIGILIAFQFYLSTFVTESAVILGIIPIYFSF 378
Query: 341 LIPVILTISLSILI 354
++P LT+ L +++
Sbjct: 379 IVPTSLTVILLLVL 392
>gi|15605574|ref|NP_220360.1| hypothetical protein CT839 [Chlamydia trachomatis D/UW-3/CX]
gi|76789584|ref|YP_328670.1| permease [Chlamydia trachomatis A/HAR-13]
gi|237803271|ref|YP_002888465.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237805192|ref|YP_002889346.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311680|ref|ZP_05354250.1| putative membrane transport protein [Chlamydia trachomatis 6276]
gi|255317981|ref|ZP_05359227.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
gi|3329310|gb|AAC68436.1| hypothetical protein CT_839 [Chlamydia trachomatis D/UW-3/CX]
gi|76168114|gb|AAX51122.1| predicted permease [Chlamydia trachomatis A/HAR-13]
gi|231273492|emb|CAX10408.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274505|emb|CAX11301.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436395|gb|ADH18569.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
gi|296437326|gb|ADH19496.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
gi|296438254|gb|ADH20415.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
gi|297140755|gb|ADH97513.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
gi|297748967|gb|ADI51513.1| Predicted permease [Chlamydia trachomatis D-EC]
gi|297749847|gb|ADI52525.1| Predicted permease [Chlamydia trachomatis D-LC]
Length = 354
Score = 47.8 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKTT++ L + + + L EI + + + + + + A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S ++ P ++ S +L F
Sbjct: 58 YLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + I K I
Sbjct: 118 SELASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVVIALKHN 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + + V + + + N L + +
Sbjct: 178 QEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKIT 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ FA +S+ + K I + I I L+ MT ++ R
Sbjct: 238 ATLFAGKSYMKTRTDY-LPWKQLIQDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKPR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISLSILILL 356
+P + + + I GK+ I + V L P +L+ + +
Sbjct: 297 FRKP-------VLIYALFPILNLIFLIVGKNTIHPISAVMLFLFPQLLSWLIFSWRIY 347
>gi|295917939|gb|ADG60246.1| permease YjgP/YjgQ [uncultured bacterium]
Length = 122
Score = 47.4 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L + A L+ + + + + + + VP
Sbjct: 22 IDRYILRLVLVPMFGVFILAASLLMLEKMLRLFEFVSTQGG-PVQVVFRMLVNLVPEYAG 80
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
IP ++ ++ F L +SEL + RA+G+S +LL
Sbjct: 81 LAIPLGLMLGILLAFRKLATSSELDVMRAVGMSYSRLLRVPY 122
>gi|255349244|ref|ZP_05381251.1| putative membrane transport protein [Chlamydia trachomatis 70]
gi|255503781|ref|ZP_05382171.1| putative membrane transport protein [Chlamydia trachomatis 70s]
gi|255507462|ref|ZP_05383101.1| putative membrane transport protein [Chlamydia trachomatis
D(s)2923]
gi|289525885|emb|CBJ15367.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
gi|296435471|gb|ADH17649.1| putative membrane transport protein [Chlamydia trachomatis E/150]
gi|296439188|gb|ADH21341.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
Length = 354
Score = 47.4 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKTT++ L + + + L EI + + + + + + A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S ++ P ++ S +L F
Sbjct: 58 YLLPFILPVSCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + I K I
Sbjct: 118 SELASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHN 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + + V + + + N L + +
Sbjct: 178 QEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKIT 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ FA +S+ + K I + I I L+ MT ++ R
Sbjct: 238 ATLFAGKSYMKTRTDY-LPWKQLIQDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKPR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISLSILILL 356
+P + + + I GK+ I + V L P +L+ + +
Sbjct: 297 FRKP-------VLIYALFPILNLIFLIVGKNTIHPISAVMLFLFPQLLSWLIFSWRIY 347
>gi|330890525|gb|EGH23186.1| hypothetical protein PSYMO_17668 [Pseudomonas syringae pv. mori
str. 301020]
Length = 146
Score = 47.0 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
R+ + + I +PL + +TL+A +S R + + + I I+ +
Sbjct: 35 PAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRY-LKLLPAILLYMSYLAILISV 93
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+S + G L + +S+ +L+
Sbjct: 94 RSSLEKGKLPLSLGMWWVHGIYLSIGLLLFYW 125
>gi|188996313|ref|YP_001930564.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931380|gb|ACD66010.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 336
Score = 47.0 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 41/348 (11%), Positives = 105/348 (30%), Gaps = 22/348 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K + K + + +++ L + + + S+ L
Sbjct: 1 MKILDKYLIKLFFKNFILLIGLFSLIITSSQLLHLPSFAYSMNIIDFSKLLFLIDI---S 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + F + ++V +L +E+ + GIS QLL P + +++ I +
Sbjct: 58 FIKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFST 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I S + + + + + KI ++ +
Sbjct: 118 VIVPSANRERYKFLTYKVKSYILENVSPKNF--------------SKINDNVSVYVEKKE 163
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I + + L ++ + S IK + +
Sbjct: 164 KNTFYNILIYNASNGYLITAKEGMFISNNLILKDGYIQLPSEKSFD---TIKYEKYTFSL 220
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + K + + + + + + + I + RS
Sbjct: 221 DVSYIKEISMQDFRTKDLLKLAVEEDSKVLSILADRFYFVIPFMFLGFIGFLSGINTYRS 280
Query: 302 NQPRIIVAYGIFSGFML--YTIITIMKSFGKSGILLPVAAALIPVILT 347
+ + A + G+M+ Y + I++ + P+ +I ++
Sbjct: 281 KETLLTFAVSLSIGYMVLNYYFLKIIEKMPALFFVYPILLIVIFYLVY 328
>gi|285019432|ref|YP_003377143.1| permease [Xanthomonas albilineans GPE PC73]
gi|283474650|emb|CBA17149.1| putative yjgp/yjgq family permease protein [Xanthomonas
albilineans]
Length = 361
Score = 47.0 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 23/215 (10%), Positives = 66/215 (30%), Gaps = 2/215 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP L RY + + ++ L+ +++ L ++ + + +
Sbjct: 1 MPK-LDRYLLRDFFQSFSATLIVLLVVSVGGVLVDVLGNIAD-GRIPAKLLFSQLGLQFV 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + I+P ++ ++ L R SE+ + AIG+ +LL P ++ + + L
Sbjct: 59 VYLPLILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRLLRPILMLVVPVVTLVGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ L+ + + + + + +
Sbjct: 119 LWLGPWADRTSDQLVNEANHSLLMAGLEAGRFTSLPDGSIVYVSTLSGDGTRLSKVFVQR 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
R ++L+ ++
Sbjct: 179 QKDGRLDVVTGQRGAMFFEGKAERYLRLEDGYRFE 213
>gi|166154183|ref|YP_001654301.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|166155058|ref|YP_001653313.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335428|ref|ZP_07223672.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
gi|165930171|emb|CAP03655.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|165931046|emb|CAP06609.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 354
Score = 47.0 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP ILW+ YLKTT++ L + + + L EI + + + + + + A ++P
Sbjct: 1 MP-ILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + +F L+ +++ +A G S ++ P ++ S +L F
Sbjct: 58 YLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTC 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A+ I + + I K I
Sbjct: 118 SELASICRFQTGKAIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHN 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + + V + + + N L + +
Sbjct: 178 QEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKIT 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ FA +S+ + K I + I I L+ MT ++ R
Sbjct: 238 ATLFAGKSYMKTRTDY-LPWKQLIQDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKPR 296
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI--LLPVAAALIPVILTISLSILILL 356
+P + + + I GK+ I + V L P +L+ + +
Sbjct: 297 FRKP-------VLIYALFPILNLIFLIVGKNTIHPISAVMLFLFPQLLSWLIFSWRIY 347
>gi|32471812|ref|NP_864806.1| signal peptide [Rhodopirellula baltica SH 1]
gi|32397183|emb|CAD72490.1| hypothetical protein-signal peptide and transmembrane prediction
[Rhodopirellula baltica SH 1]
Length = 413
Score = 46.6 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG- 329
T + IV + A+ L+ + R + +++ + + + TI + G
Sbjct: 323 RTTTHERIVRAPLDFALILLVLP-MVVNRRGRKLFVLIGSAVGLIIAFFALKTIASALGG 381
Query: 330 KSGILLPVAAALIPVILTISLS 351
+ ++ P AA IP+++ L+
Sbjct: 382 STTMVTPGIAAWIPLLIIGPLA 403
Score = 40.8 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 3/132 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI---IPFITLVVN 75
L + V + + S VLA P ++ ITL+
Sbjct: 1 MCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPYLLLLFDMTGTIITLMAF 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ L RT EL + + G+S ++L P ++ S+ + + +
Sbjct: 61 LFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLANREWVIPRFRDSLTMKA 120
Query: 136 QQWKDNGDKQKS 147
+ + ++
Sbjct: 121 KNLSGDIEQAVM 132
>gi|237756215|ref|ZP_04584779.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691625|gb|EEP60669.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 336
Score = 46.6 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 110/337 (32%), Gaps = 18/337 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL +Y K + K L + +++ L + + + S+ L
Sbjct: 1 MKILDKYLIKLFFKNFLLLIGLFSLIITSSQLLHLPSFAYSMNIIDFSKLLFLIDI---S 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + F + ++V +L +E+ + GIS QLL P + +++ I +
Sbjct: 58 FIKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFST 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I S + + + + + +I++ +K N + + +S
Sbjct: 118 VIVPSANRERYKFLTYKVKSYILENVSPKNFSKINDNVSVYVEKKEKNTFYNILIYNASS 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + I+ + ++L + + S ++ ++ +
Sbjct: 178 GYLITAKEGMFISN--NLILKDGYIQLPSGKSFDTIKYEKYTFSLDVSYIKEISMQDFKT 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + E K +S F IP M + + ++ S+
Sbjct: 236 KDLLRLAVEEDSKALSILADR-------------FYFAIPFMFLGFIGFLSGINTYRSKE 282
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
V+ I + Y + I++ + P+
Sbjct: 283 TLLTFAVSLSIGYMVLNYYFLKIIEKVPVLFFVYPIV 319
>gi|330975729|gb|EGH75795.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 131
Score = 46.6 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
R+ + + I +PL + +TL+A +S R + + + I I+ +
Sbjct: 20 PAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRY-LKLLPAILLYMSYLAILISV 78
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+S + G L + +S+ +L+
Sbjct: 79 RSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYW 110
>gi|15612083|ref|NP_223735.1| hypothetical protein jhp1018 [Helicobacter pylori J99]
gi|4155611|gb|AAD06602.1| putative [Helicobacter pylori J99]
Length = 345
Score = 46.2 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ + + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLAFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKTENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|262363206|gb|ACY59927.1| membrane protein [Yersinia pestis D106004]
Length = 225
Score = 46.2 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 69/204 (33%), Gaps = 1/204 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + ++ +FIG N ++
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK 207
+++ ++ ++ + +
Sbjct: 181 GNQRPSVVVADSGHMSELPDGSQM 204
>gi|15644990|ref|NP_207160.1| hypothetical protein HP0362 [Helicobacter pylori 26695]
gi|2313464|gb|AAD07430.1| conserved hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 345
Score = 45.8 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ F S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKVFAPLSLLVSAILLVFSLILIPTSKSTYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ K +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKTKNNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|327405435|ref|YP_004346273.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
gi|327320943|gb|AEA45435.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
Length = 495
Score = 45.8 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 75/252 (29%), Gaps = 2/252 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + K + + +M+++ + + + ++ L
Sbjct: 1 MKK-LTVFSIKSFGGPFVVTFFISMVMLIMQFTWVYIDDLMGK-GLGVAVIIELMFYVSA 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I +P L+ +I+ NL +EL ++ G+S++++L P I++ T
Sbjct: 59 GLIPLALPLAILLSSIMTLGNLAENNELTALKSSGLSLFRILRPLTQTVIVIATATFFFA 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + +I ++ + + K + D+T
Sbjct: 119 NYVIPVANLKWHTIIYDIQETKVGMLLTPGSYTKEIEGYAIKIKSGKDNTFKGITIHDYT 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + K K L + ++ + + F+
Sbjct: 179 NPNVLKTVKADSGIVYKGDDGKYLLFHLSNGIIHEELQAQAPVFTEQGQSFHPGGDFRPS 238
Query: 241 SEQFASRSFYEI 252
+ Y++
Sbjct: 239 RTTQFKAATYKM 250
Score = 45.5 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ + +F+ + ++ + + A + R V + + + ++
Sbjct: 380 NYDLYQIEFHRKFALSGAIIVLFFVGAPLGA-IIRKGGFGAPVVIAALLFMVYFVLFSVG 438
Query: 326 KSFGKSG--ILLPVAAALIPVILT 347
++ S IL P +P +
Sbjct: 439 QNLATSNDKILSPFWGMWLPTAVL 462
>gi|297380268|gb|ADI35155.1| Hypothetical protein HPV225_1109 [Helicobacter pylori v225d]
gi|308063875|gb|ADO05762.1| hypothetical protein HPSAT_05215 [Helicobacter pylori Sat464]
Length = 345
Score = 45.8 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 92/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|218516795|ref|ZP_03513635.1| putative permease protein [Rhizobium etli 8C-3]
Length = 102
Score = 45.8 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 11 MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAI 94
II ++PF ++ +N SEL + A
Sbjct: 70 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAA 102
>gi|188527872|ref|YP_001910559.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
gi|188144112|gb|ACD48529.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
Length = 345
Score = 45.5 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 92/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A + +L
Sbjct: 318 LFLMTFFFPFIWAFVSYLLF 337
>gi|242310520|ref|ZP_04809675.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239522918|gb|EEQ62784.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 341
Score = 45.5 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 36/317 (11%), Positives = 92/317 (29%), Gaps = 9/317 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + + L + V+ I + + S L +PL++ +I
Sbjct: 6 YLFHSFSQIFFPTFLVLFFIASVVIFIRIAG-VTFVVQISFLELLSLYFYTLPLMLFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V + L+ EL + A+G+S +++ F ++L I ++ +
Sbjct: 65 PLSFFVACALSLSRLSFDYELPVLFALGMSPNKIIKIFFPIALLASISLFILSLILTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K++ + ++ N + + + ++ + F
Sbjct: 125 DLAYRQFLEERKNSININLQAGEFGQKLGNWLVYVKENHEDMSYKDIVLLSFGKEGGLIF 184
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
K + D + L Y+ I+K + + +
Sbjct: 185 AKDAKIINKDGVME----AILDNGKIYRPDENAIEK----IAFKTLILRNSITDISGQNL 236
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+E + + N + + L L+ + +
Sbjct: 237 GVFEYWNRAFYENDRQRKTLRDLSMYVLMSLFPFVSLYFFPLLGVKNPRYQRNHTILQSM 296
Query: 308 VAYGIFSGFMLYTIITI 324
+ G+F +
Sbjct: 297 LIIGVFYALTYLVANYL 313
>gi|217034468|ref|ZP_03439880.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
gi|216943070|gb|EEC22547.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
gi|308062367|gb|ADO04255.1| hypothetical protein HPCU_05530 [Helicobacter pylori Cuz20]
gi|317178605|dbj|BAJ56393.1| hypothetical protein HPF30_0296 [Helicobacter pylori F30]
gi|332673892|gb|AEE70709.1| conserved hypothetical protein [Helicobacter pylori 83]
Length = 345
Score = 45.5 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 92/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A + +L
Sbjct: 318 LFLMTFFFPFIWAFVSYLLF 337
>gi|224373192|ref|YP_002607564.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
gi|223589644|gb|ACM93380.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
Length = 323
Score = 45.5 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 36/315 (11%), Positives = 93/315 (29%), Gaps = 1/315 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + + L LV I + + + + + +P ++
Sbjct: 4 LSKYLISGFWPIFIMIFLILF-LVTSIIIIISIANITANIHITFGELFKMYMLSLPKVLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ + + +F + T EL+ + G+ + LL PF+ S+LL I +L++
Sbjct: 63 ITLSISFFISAVSLFAKHSETQELIALFSSGVKPYTLLKPFLFLSLLLTIVNLLILFISI 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + Q + + N K ++ + + I
Sbjct: 123 PYAKVAFKNFKNQKQQAAKFNFQTSQISQRFGNWNIFTSSKKGKTYENIILYNNKENQLI 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K + K+ L + N + F ++ ++F
Sbjct: 183 LAKYAELKNKNGYLNFELKKGNVYAFDKSTIINFGKMQINQKIPKSSYSIFRFSEYFKKF 242
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + + + + + +A+ +I ++ S
Sbjct: 243 KELFAFYLPFALLPLSLIFFIPPISFFHPRIYKNRSLIYAIALIVIYLVLTKITSSLAVN 302
Query: 305 RIIVAYGIFSGFMLY 319
+I G++++
Sbjct: 303 SLICLLFFIVGYVVF 317
>gi|308183196|ref|YP_003927323.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
gi|308065381|gb|ADO07273.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
Length = 345
Score = 45.5 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 36/320 (11%), Positives = 85/320 (26%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSTYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
++ + + ++ + + + + +
Sbjct: 144 AGEFGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELN--- 200
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
L Y + K ++ + + K+ +
Sbjct: 201 LYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQ 260
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R +Q + + PL V + + + R G + I
Sbjct: 261 KRRFSQAILVSLFPLASVFLIPL---FGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFGSYLLF 337
>gi|307637757|gb|ADN80207.1| integral membrane protein [Helicobacter pylori 908]
Length = 345
Score = 45.5 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDATYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|145629199|ref|ZP_01784998.1| predicted permease [Haemophilus influenzae 22.1-21]
gi|144978702|gb|EDJ88425.1| predicted permease [Haemophilus influenzae 22.1-21]
Length = 270
Score = 45.1 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 87/256 (33%), Gaps = 10/256 (3%)
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
++ ++ S+L ++ + +++++ K N ++ +N
Sbjct: 1 MVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNV 60
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGR 218
+FI K +++ + K +I + +L + N LK +
Sbjct: 61 VLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTS 120
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
D T + G+Q + + + + + S + + ++ I
Sbjct: 121 ALPDFRITHFDEYHAYLGYQSAENTNDEVAELTLSQLIDLDSSSA-------KAELHWRI 173
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ L + M LIA +S R + + + + + + + KS G +G L
Sbjct: 174 TLILAVPLMALIAVPLSRVNPRQGRFAK-ILPALLLYLIYFLLQSSFKSAGSAGKLEAEL 232
Query: 339 AALIPVILTISLSILI 354
+ I L++++
Sbjct: 233 LMPLVNIGFFLLAVVL 248
>gi|317177843|dbj|BAJ55632.1| hypothetical protein HPF16_1035 [Helicobacter pylori F16]
Length = 345
Score = 45.1 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 93/320 (29%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSSKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y + +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWEKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|307721207|ref|YP_003892347.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
gi|306979300|gb|ADN09335.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
Length = 340
Score = 45.1 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 34/338 (10%), Positives = 102/338 (30%), Gaps = 16/338 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + + L ++ VI L + + SI L +P I+
Sbjct: 4 LQKYILNNFSALFMSIFLPLFVIASVIFLI-KLSTYTAVIQLSIWEMGKLYLFVLPEILF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + + F L+ +E+++ A+GI ++ F + +L + ++
Sbjct: 63 YTLPITFFIAATLSLFKLSNDNEIIVIFALGIEPGFIVKTFFKPAFILSLLLAFDFLVVS 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + K + + I K +
Sbjct: 123 PHTTVLSKNFLSYKKSEAKFNLAASEFGNSFGDWLLYIGEKDKDGTFSKVFLFNKKQ--- 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ ++ I + + + + S + N +++
Sbjct: 180 ---------ENEEILIAAKRATVINDAGILRLKLMDGEGYSYSTNKFSQVNFKAMLINDT 230
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + + + + R + ++ L + + AS+ + R +
Sbjct: 231 LKADLTTYKQPLQY--WLSKENAGRKKHVLIKDTLLSLFPMITLFLIASIGIVQVRHQKS 288
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++ + + + Y + ++ + +L V + +
Sbjct: 289 KVYLYL-FLTIVLYYGMTIGLEKMFQYYTILVVTLSWL 325
>gi|325996358|gb|ADZ51763.1| integral membrane protein [Helicobacter pylori 2018]
gi|325997946|gb|ADZ50154.1| hypothetical protein hp2017_1044 [Helicobacter pylori 2017]
Length = 345
Score = 45.1 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 37/320 (11%), Positives = 85/320 (26%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
++ + + ++ + + + + +
Sbjct: 144 AGEFGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELN--- 200
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
L Y + K ++ + + K+ +
Sbjct: 201 LYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQ 260
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R +Q + + PL V + + + R G + I
Sbjct: 261 KRRFSQAILVSLFPLASVFLIPL---FGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|317014475|gb|ADU81911.1| hypothetical protein HPGAM_05615 [Helicobacter pylori Gambia94/24]
Length = 345
Score = 45.1 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKTENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|254779645|ref|YP_003057751.1| hypothetical protein HELPY_1062 [Helicobacter pylori B38]
gi|254001557|emb|CAX29575.1| Conserved hypothetical protein; putative membrane protein; putative
signal peptide [Helicobacter pylori B38]
Length = 345
Score = 45.1 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|261838424|gb|ACX98190.1| integral membrane protein [Helicobacter pylori 51]
Length = 345
Score = 44.7 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 92/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A + +L
Sbjct: 318 LFLMTFFFPFIWAFVSYLLF 337
>gi|153875332|ref|ZP_02003181.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
gi|152068203|gb|EDN66818.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
Length = 218
Score = 44.7 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + +PL ++ + +A +S R Q + +GI + ++ + K + + G +
Sbjct: 105 QWRLSLPLTVILLAALAVPLSHTTPRQGQYAK-ILFGILIYLIYNNLLNVAKKWVERGDV 163
Query: 335 LPVAAALIPV 344
P
Sbjct: 164 PPWIGVWWVH 173
>gi|317011287|gb|ADU85034.1| hypothetical protein HPSA_05295 [Helicobacter pylori SouthAfrica7]
Length = 345
Score = 44.7 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV SIL+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMAKAFVPLSILVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNKNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKIDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGIYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|317009699|gb|ADU80279.1| hypothetical protein HPIN_05385 [Helicobacter pylori India7]
Length = 345
Score = 44.7 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R ++ L +A + + R G + I
Sbjct: 262 RRFSQAV----LVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|317180825|dbj|BAJ58611.1| hypothetical protein HPF32_1029 [Helicobacter pylori F32]
Length = 345
Score = 44.7 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|308184829|ref|YP_003928962.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
gi|308060749|gb|ADO02645.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
Length = 345
Score = 44.7 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 92/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGIYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A I +L
Sbjct: 318 LFLMTFFFPFIWAFISYLLF 337
>gi|208434987|ref|YP_002266653.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
gi|298735907|ref|YP_003728432.1| hypothetical protein HPB8_411 [Helicobacter pylori B8]
gi|208432916|gb|ACI27787.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
gi|298355096|emb|CBI65968.1| conserved hypothetical protein [Helicobacter pylori B8]
gi|317012864|gb|ADU83472.1| hypothetical protein HPLT_05405 [Helicobacter pylori Lithuania75]
Length = 345
Score = 44.7 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFGSYLLF 337
>gi|326561252|gb|EGE11611.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 120
Score = 44.3 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISET--YTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNH 120
>gi|34763638|ref|ZP_00144567.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886691|gb|EAA23835.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 176
Score = 44.3 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 1/163 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYI-NQGKLAGGEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
N I T + D K + I+N ++
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLY 162
>gi|225848004|ref|YP_002728167.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644087|gb|ACN99137.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 339
Score = 44.3 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 19/349 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K + K + + I++ L + N + + V+
Sbjct: 1 MKILHRYILKNFFKKFIILIGLFSIVITSSQLLHLPNFAYSMNLIDFLQLLVMIDI---S 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I F + ++V ++ +E+ ++G+S +LL P + + L ++V
Sbjct: 58 FLKYQILFGFFIAWLLVGVSIRENNEIYAVYSLGVSQKELLKPVFITTTLFTALALIVSI 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + N + + KI ++ +
Sbjct: 118 TLIPYANQERSKFLTLKVKNYILESIQPKNF--------------SKINENISVYTESKE 163
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K I ++ + L KVV + S ++ K S
Sbjct: 164 NSTLHKIIIYNKSNKYLITAKEGIFFQDKVVLKDGYIHIPSEKSFSVIKYEKYSFSLDTS 223
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ S +A + I P+ + + I + L FS+S
Sbjct: 224 YVKEIPLEDYKTSQLINVFFSKEKDYQKAYSVLIDRIFFPIPFIFIGFIGFLLGLNFSKS 283
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + I + I + + + L+ ++L +
Sbjct: 284 KETLLSLVISI--SILYMVINYLFIRVIEKNTFISFVYLLVLILLFSGI 330
>gi|328676744|gb|AEB27614.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida Fx1]
Length = 276
Score = 44.3 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 21/265 (7%), Positives = 72/265 (27%), Gaps = 3/265 (1%)
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
+ ++ A GI+ Q++ + + L I T++ + + ++
Sbjct: 1 MFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLNPLSKQTLDIYKASLSAKALLSSI 60
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
++ + + + T + K
Sbjct: 61 TDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDF 120
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ + + + + S F + + N ++ +
Sbjct: 121 MNVNIYTKNSQN--SEYSYDNAKKAIYTIFDNSDRDYNHDRVDRLYMHTLIENFNDKTNG 178
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ +F+ I + ++ +L+A ++ R N+ + + + + +
Sbjct: 179 TAYKAEFFGRINNAISVIVSSLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINT 237
Query: 328 FGKSGILLPVAAALIPVILTISLSI 352
+G + +P I ++
Sbjct: 238 LMANGSVPVWIGFWLPHIFFTIFAV 262
>gi|261839824|gb|ACX99589.1| hypothetical protein HPKB_1021 [Helicobacter pylori 52]
gi|315586981|gb|ADU41362.1| conserved hypothetical protein [Helicobacter pylori 35A]
gi|317182344|dbj|BAJ60128.1| hypothetical protein HPF57_1054 [Helicobacter pylori F57]
Length = 345
Score = 44.3 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A + +L
Sbjct: 318 LFLMTFFFPFIWAFVSYLLF 337
>gi|289612556|emb|CBI60086.1| unnamed protein product [Sordaria macrospora]
Length = 139
Score = 44.3 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ + ++A ++ + RS+ + V I + + ++ G G + P+ A +P
Sbjct: 1 MFLLPMLALALGVPPKRSSS-ALGVFLSIVMIVTYHKVNEYGEAVGGLGRIDPILALWVP 59
Query: 344 VILTISLSILI 354
+L +L +
Sbjct: 60 FLLFAALVFRL 70
>gi|108563456|ref|YP_627772.1| hypothetical protein HPAG1_1031 [Helicobacter pylori HPAG1]
gi|107837229|gb|ABF85098.1| conserved hypothetical integral membrane protein [Helicobacter
pylori HPAG1]
Length = 345
Score = 44.3 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ G + L++ K+ F + + Y K +F +N
Sbjct: 202 YSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFGSYLLF 337
>gi|210135251|ref|YP_002301690.1| integral membrane protein [Helicobacter pylori P12]
gi|210133219|gb|ACJ08210.1| integral membrane protein [Helicobacter pylori P12]
Length = 345
Score = 43.9 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 6/320 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S + FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDTAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R I++ L +A + + R G + I
Sbjct: 262 RRFSQA----ILVSLFPLASMFLIPLFGIANPRFKTNWSYFYVLGAVGVYFLMVHVISTD 317
Query: 328 FGKSGILLPVAAALIPVILT 347
P A +L
Sbjct: 318 LFLMTFFFPFIWAFASYLLF 337
>gi|218661972|ref|ZP_03517902.1| putative permease protein [Rhizobium etli IE4771]
Length = 115
Score = 43.9 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L Y + + L LL + +++ + + N + + SI A LA +P
Sbjct: 11 MKLLETYILRGVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPS 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIG 95
II ++PF ++ +N SEL + A G
Sbjct: 70 IIPVVLPFALVIAITQTLTTMNNDSELTVIDAAG 103
>gi|304383499|ref|ZP_07365959.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335309|gb|EFM01579.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 634
Score = 43.9 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + + + L + I A + R + V +
Sbjct: 354 DFRAMLTSDGDQLIREHDIEAISKFTLALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVL 412
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y + + G+ + + I LSI I +
Sbjct: 413 VYIIYYILDNSGYRMARGGMWTVWFGKGLAPAVLIPLSIFITYK 456
>gi|262363205|gb|ACY59926.1| membrane protein [Yersinia pestis D106004]
Length = 116
Score = 43.5 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ A +F++ + + + +V M L+ +S+ R + + + + +
Sbjct: 3 MKELWRSQEPDARAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRV-LSMLPAMLLYLIF 61
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + ++S +G L P+ ++L+I++
Sbjct: 62 FLLQSSLRSKAGNGQLDPLVWMWAVNGAYLALAIIL 97
>gi|283955209|ref|ZP_06372710.1| LOW QUALITY PROTEIN: putative integral membrane protein
[Campylobacter jejuni subsp. jejuni 414]
gi|283793246|gb|EFC32014.1| LOW QUALITY PROTEIN: putative integral membrane protein
[Campylobacter jejuni subsp. jejuni 414]
Length = 353
Score = 43.5 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 35/327 (10%), Positives = 93/327 (28%), Gaps = 5/327 (1%)
Query: 31 IDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVI 90
IDL + + N ++ L + VP ++ + F +V I ++ R +E V
Sbjct: 30 IDLLLNFKDLPKAANLNLLYIMFLCFSAVPYVLPISLIFALVVSLI----SMIRANEFVS 85
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
A+G+S ++ + ++ + + ++++ + +
Sbjct: 86 LYALGLSKNYVVLFPFLWALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMTQSGEVFLK 145
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+ + D + ++ + N + K
Sbjct: 146 FNNNFVYISKINNGQNSAQNIKIFNINDSNLSSFISAKNAYFEGESWILRDGNITLLPKN 205
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
G D + K + + + F ++ R
Sbjct: 206 YELANDGLKIKDFSQLKSLDGFKPKIIEGVASNSDYSISDALESFELFRAQNVNTDALRI 265
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ L M LI +R + M++ ++ ++ +
Sbjct: 266 NLYKFIFTPFFLPHFLM-LIMYYFFPIIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSE 324
Query: 331 SGILLPVAAALIPVILTISLSILILLQ 357
+ ++ +IP+I+ LS + +
Sbjct: 325 NSVIASEIGIVIPIIILGCLSAYMYYK 351
>gi|224533436|ref|ZP_03674029.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi CA-11.2a]
gi|224513398|gb|EEF83756.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi CA-11.2a]
Length = 390
Score = 43.1 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 52/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + ++S +
Sbjct: 236 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYMDESYVFENLNYMYNLNLNFKPYQDRSMKQN 295
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 296 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 355
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 356 VYTVQYAPSPIIVTILPNLILIIAGAILFLRL 387
>gi|219685677|ref|ZP_03540491.1| conserved hypothetical integral membrane protein [Borrelia garinii
Far04]
gi|219672793|gb|EED29818.1| conserved hypothetical integral membrane protein [Borrelia garinii
Far04]
Length = 390
Score = 42.8 bits (98), Expect = 0.085, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ +KS + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 283 NFKPYQDKSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISII 342
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 343 ICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 387
>gi|152990851|ref|YP_001356573.1| hypothetical protein NIS_1107 [Nitratiruptor sp. SB155-2]
gi|151422712|dbj|BAF70216.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 338
Score = 42.4 bits (97), Expect = 0.098, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 96/338 (28%), Gaps = 13/338 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + ++ L + L + +I + + S+ A L P
Sbjct: 1 MPKLL-RYLGNHLYESFLSYFLPLFGIASLIFFI-KIVSLTSIVQLSLVDLAKLYIFITP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ IP + + + L+ E + ++GIS +++ + ++LL + ++
Sbjct: 59 QILFFTIPVVFFIAAVTALHKLSFDYETIAFFSLGISPTKIMRYLTLLAVLLSLLLFIIA 118
Query: 121 NPIATS------GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ G + W + + +L
Sbjct: 119 YMLIPQGKQLEKGFYRYKKTEANINLKPSEYGHKFGNWFVYVQKKDKNNLFENVVLYNFD 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + N K +++ +++T +
Sbjct: 179 NEQERFITSKKATFDNSQYGLKLTLYDGNAYTYKKGILDQITFTKMDLFDTSTSYYFQYI 238
Query: 235 DGFQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
D ++Q A + + + Y + L ++
Sbjct: 239 DPIHYWEKAFLNKQRAFDMLFFLWIALLPVLGMPYAGMIGIHHPRYHKGGVFLKVLFALF 298
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
I + S++ ++ ++ +Y + S
Sbjct: 299 IYFGFAFLLSKTLYYYSLLFMALWFFGGIYLFHKTIMS 336
>gi|224534174|ref|ZP_03674754.1| conserved hypothetical integral membrane protein [Borrelia
spielmanii A14S]
gi|224514599|gb|EEF84913.1| conserved hypothetical integral membrane protein [Borrelia
spielmanii A14S]
Length = 429
Score = 42.4 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ ++S + +FY I +PL ++ +A S+ L +R + + I
Sbjct: 322 NFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNRKYSIILELVISII 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 382 ICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRI 426
>gi|297170536|gb|ADI21564.1| hypothetical protein [uncultured verrucomicrobium HF0070_35E03]
Length = 324
Score = 42.4 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 34/324 (10%), Positives = 88/324 (27%), Gaps = 34/324 (10%)
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+PF +V + + E++ R++G + LL ++ L+ + + +
Sbjct: 1 MALPFGFVVSVVFLIGKWVADGEILAYRSLGGDVLALLWVVMLFGTLISVISTYSSLEWS 60
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--------------------- 163
L + + + + +
Sbjct: 61 PVNRSKFDQLKNEILWTQTNLLLEERGEIGFAFHSDEQSKTSEKLNALAGERIRGASLSV 120
Query: 164 -------IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY 216
+I+ E+ + +K + RKD ++ V L+
Sbjct: 121 FDASDDLWKNLRIVLSGGPNEEVLVVIHARKAFVEKRKDKGELVLDLLDVDLEYGFSTGE 180
Query: 217 GRIPIDKNSTTLNIPIKMDGFQK--FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
S + + + F E++ + S + +
Sbjct: 181 KAAGGQFLSFERWKEPIVFQINQEARPKGVKRMGFTELLSAIERSEDPQFRNEGISLLSK 240
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + L+ + S S I ++ G+ G Y + ++ L
Sbjct: 241 NLSFGTSPFFLGILLVPIGILAGKSES---LINLSLGLAIGLGFYAMGLLLSGLMGKHDL 297
Query: 335 LPVAAALIPVILTISLSILILLQK 358
A P I+ L ++++++
Sbjct: 298 G-FAGWWAPNIVCFLLGMILMIRI 320
>gi|145487896|ref|XP_001429953.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397047|emb|CAK62555.1| unnamed protein product [Paramecium tetraurelia]
Length = 1677
Score = 42.4 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 42/369 (11%), Positives = 99/369 (26%), Gaps = 24/369 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF +L + F L +L + + L +I L +
Sbjct: 1240 YFIMVFLLSLAGFSFITGGLNIFFNLLDSIQMLAYLKYLNIIFPYNLQMYFETFGFAEFD 1299
Query: 68 PFITLVVNIVVFFNL-NRTSELVISRAIGI----SIWQLLNPFVVGSILLGIFTVLVINP 122
+ + + + SE + S++ + V+ ++ T ++
Sbjct: 1300 FLKEYISVQLTILDFDFKMSENQPDQKFAEEGYSSLFVINILSVLSVFVITYCTFMLSII 1359
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L + D+ ++ I G N+I ++
Sbjct: 1360 LNKLCNYYIHYLHNKISDDIYFVLGMFQYYLYIGAKHLLFLSGIYTSQIHNNIIRTILTV 1419
Query: 183 TIDKKNKI-----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+D + +++ D + + + +++ YG I K
Sbjct: 1420 AMDFNMAMFLQLKMYQNDMGFSYYLSVIAFIAQLLFIYYGLNAISKKQYEFVTQTYKQKH 1479
Query: 238 QKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F E F + M K + ++ + + I +
Sbjct: 1480 ESFLEGNPEIHQNQFVKYYNLMILIKKMMFMFSLIFLYHCPSFQILISSIQNIIFIGYII 1539
Query: 295 SLEFSRSNQPRIIVAYG-------IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+ + V ++Y I + +S I +
Sbjct: 1540 LTKPLKDINEFYKVILTECILWLEQLFILLIYYIQSGTNQLDQSQISNMEILGW----VI 1595
Query: 348 ISLSILILL 356
I LS+++LL
Sbjct: 1596 IGLSVVMLL 1604
>gi|224532217|ref|ZP_03672849.1| conserved hypothetical integral membrane protein [Borrelia
valaisiana VS116]
gi|224511682|gb|EEF82088.1| conserved hypothetical integral membrane protein [Borrelia
valaisiana VS116]
Length = 390
Score = 42.4 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 53/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + +KS I +
Sbjct: 236 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYVDESYVFENLNYMYNLNLNFKPYQDKSMIQN 295
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 296 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 355
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 356 VYTVQYAPNPIVVTILPNLILIVAGAILFLRL 387
>gi|203284703|ref|YP_002222443.1| hypothetical protein BDU_815 [Borrelia duttonii Ly]
gi|201084146|gb|ACH93737.1| conserved hypothetical integral membrane protein [Borrelia duttonii
Ly]
Length = 429
Score = 42.4 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 37/105 (35%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + +FY I +PL ++ +A + + ++ + + I
Sbjct: 322 NYAPYEDLIANRSYAFFYLEFYQKISLPLSVLFFIFLAFGMGMYSNKKYSIILELVISIL 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P IL + +++ L+
Sbjct: 382 ICVFYWAMFMGGKVYTVQHAPNPILVIILPNILLMVAGLILFLRL 426
Score = 38.1 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 28/242 (11%), Positives = 73/242 (30%), Gaps = 3/242 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L + + F+ + + + + + +P+++
Sbjct: 11 YIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNY-VPFFKAFIFVIYSLPMVVALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ + +E++ R+IGISI LL PF+ +++ + + ++ + + G
Sbjct: 70 PFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLPLG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + K+ + G K ++ +
Sbjct: 130 SIGRLKIFNDIKEEIPHLILKP--YSSKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGYD 187
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ ++ + L V+ +K Q
Sbjct: 188 RIFMAKELNIQKENHQVYFILNNVLSIALTEDEKGFYDYFYADRMKYSIDQVTFSDGWVL 247
Query: 248 SF 249
++
Sbjct: 248 TY 249
>gi|323163036|gb|EFZ48869.1| hypothetical protein ECE128010_0632 [Escherichia coli E128010]
Length = 150
Score = 42.4 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 1/151 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + L + + + + ++ + +V +
Sbjct: 1 MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAAN-GTLALDVVLDIVFYKVLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P V V + SE+ A G S +L + +I L IF L+
Sbjct: 60 ALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSM 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
L QQ + D ++ +
Sbjct: 120 YGRPWAYAQIYQLEQQSQSELDVRQLRAKKF 150
>gi|15595152|ref|NP_212941.1| hypothetical protein BB0807 [Borrelia burgdorferi B31]
gi|221217627|ref|ZP_03589096.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 72a]
gi|225551663|ref|ZP_03772607.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
gi|226320854|ref|ZP_03796406.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 29805]
gi|2688742|gb|AAC67148.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi B31]
gi|221192573|gb|EEE18791.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 72a]
gi|225371690|gb|EEH01116.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
gi|226233720|gb|EEH32449.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 29805]
Length = 429
Score = 42.0 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 52/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + ++S +
Sbjct: 275 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYVDESYVFENLNYMYNLNLNFKPYQDRSMKQN 334
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 335 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 394
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 395 VYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|256419088|ref|YP_003119741.1| protoporphyrinogen oxidase-like protein [Chitinophaga pinensis DSM
2588]
gi|256033996|gb|ACU57540.1| Protoporphyrinogen oxidase-like protein [Chitinophaga pinensis DSM
2588]
Length = 1033
Score = 42.0 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 25/356 (7%), Positives = 81/356 (22%), Gaps = 13/356 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
++ + + L + + I ++ P +
Sbjct: 672 FIANYVSSDALFLSLSLIWFTLLLWILHRPNKGLIIWHAVIILLAFTVRYNALFYPIVAA 731
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++ ++S + I+ + + +
Sbjct: 732 IAFLISRQPWRMKVVGMLSSMVLIAGFVWHTSNQYDRLTGIRQFSPFSGWQMANNALYAY 791
Query: 133 DLIQQW----------KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+Q + + + + Q+ + + + +
Sbjct: 792 RFVQDEPPPPMPAKFKQLDKMVRTYFDTTRNIFMHQQEMMIANTWYMWDPKSPLQQYMYQ 851
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K + K + + +Y T+ F
Sbjct: 852 KFKKDSTAHILKKWASVGPLFSEYGAYLIKQYPVTFTQYYLVPNTMKYYAPPVEFLDTYN 911
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ F ++ H + I + ++ + I + +
Sbjct: 912 MGKDSIAPIGQQWFGFESRKLKTHFKDLKVTILNFYPILVGMMNVVFIFSLFGFVLLKGF 971
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ ++ G+ F L+ I F L +P+++ S +L++
Sbjct: 972 KYNKSLSVGLLLAFGLWIINFGFSVFASQIALRFQM---LPILIFFSFGLLLIDYI 1024
>gi|315636695|ref|ZP_07891925.1| conserved hypothetical protein [Arcobacter butzleri JV22]
gi|315479010|gb|EFU69713.1| conserved hypothetical protein [Arcobacter butzleri JV22]
Length = 338
Score = 42.0 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 35/338 (10%), Positives = 99/338 (29%), Gaps = 17/338 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + T G + VI L + + + + + + +P II
Sbjct: 3 LQRYLYSQLAITFFPIFFGLFFITAVIFLV-KISALTAIITVNFFELFRIFSYTIPDIIF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ L+ EL + + G++ +++L F+ ++LL + ++V +
Sbjct: 62 YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K+ + + + I +N+++ED + +
Sbjct: 122 PKTDFERKQFVNIKKNEANFNIKSGEFGQKFGDWLIFIN------DKKNNLYEDVKLLKV 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
N + + ++ + + N D
Sbjct: 176 QNDNDQFVISKNAVLDNDKGVLSIRLAEGKAFLIEKEEFNQINYEAMYINDSISSAKTTV 235
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ ++ + + + + + + + R +
Sbjct: 236 FTTTYDYWKDNIKNKVDLDDLTFFI---------LTSFFPLMSLFLVITFGYFNPRYEKN 286
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ Y + S + Y +I + L + +
Sbjct: 287 -RAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWL 323
>gi|216264700|ref|ZP_03436692.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 156a]
gi|223889298|ref|ZP_03623885.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 64b]
gi|224533066|ref|ZP_03673671.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi WI91-23]
gi|225549397|ref|ZP_03770369.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 94a]
gi|225550295|ref|ZP_03771254.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 118a]
gi|215981173|gb|EEC21980.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 156a]
gi|223885219|gb|EEF56322.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 64b]
gi|224512002|gb|EEF82398.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi WI91-23]
gi|225369163|gb|EEG98617.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 118a]
gi|225370025|gb|EEG99466.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 94a]
gi|312147984|gb|ADQ30643.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi JD1]
gi|312149484|gb|ADQ29555.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi N40]
Length = 429
Score = 42.0 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 52/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + ++S +
Sbjct: 275 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYMDESYVFENLNYMYNLNLNFKPYQDRSMKQN 334
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 335 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 394
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 395 VYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|203288235|ref|YP_002223250.1| hypothetical protein BRE_818 [Borrelia recurrentis A1]
gi|201085455|gb|ACH95029.1| conserved hypothetical integral membrane protein [Borrelia
recurrentis A1]
Length = 429
Score = 42.0 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 37/105 (35%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + +FY I +PL ++ +A + + ++ + + I
Sbjct: 322 NYAPYEDLIANRSYAFFYLEFYQKISLPLSVLFFIFLAFGMGMYSNKKYSIILELVISIL 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P IL + +++ L+
Sbjct: 382 ICVFYWAMFMGGKVYTVQHAPNPILVIILPNILLMVAGLILFLRL 426
Score = 38.1 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 3/242 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L + + F+ + + + S + + +P+++
Sbjct: 11 YIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNY-VSFFKAFIFVIYSLPMVVALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ + +E++ R+IGISI LL PF+ +++ + + ++ + + G
Sbjct: 70 PFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLPLG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + K+ + G K ++ +
Sbjct: 130 SIGRLKIFNDIKEEIPHLILKP--YSSKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGYD 187
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ ++ + L V+ +K Q
Sbjct: 188 RIFMAKELNIQKENHQVYFILNNVLSIALTEDEKGFYDYFYADRMKYSIDQVTFSDGWVL 247
Query: 248 SF 249
++
Sbjct: 248 TY 249
>gi|303235938|ref|ZP_07322541.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
gi|302483811|gb|EFL46803.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
Length = 650
Score = 42.0 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + + + L + I A + R + + + + Y +
Sbjct: 378 DKMIRQHDIEEINKYTLALTCLIFFFIGAPLGA-IIRKGGLGVPIIVSVLVFIIYYILDF 436
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
K G + + I +I + +
Sbjct: 437 TGGRMAKQGYWAIWFGRGLSPAVLIPTAIFVTYK 470
>gi|218249949|ref|YP_002375305.1| hypothetical protein BbuZS7_0837 [Borrelia burgdorferi ZS7]
gi|226321272|ref|ZP_03796800.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi Bol26]
gi|218165137|gb|ACK75198.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi ZS7]
gi|226233304|gb|EEH32055.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi Bol26]
Length = 429
Score = 42.0 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 52/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + ++S +
Sbjct: 275 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYVDESYVFENLNYMYNLNLNFKPYQDRSMKQN 334
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 335 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 394
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 395 VYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|195941983|ref|ZP_03087365.1| hypothetical protein Bbur8_03799 [Borrelia burgdorferi 80a]
Length = 429
Score = 42.0 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 52/152 (34%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K +E + + + + + + + + + ++S +
Sbjct: 275 NIKNNLEGDFLSLNFSNLYLNYLYNQNYYMDESYVFENLNYMYNLNLNFKPYQDRSMKQN 334
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+FY I +PL ++ +A S+ + +R + + I + + K
Sbjct: 335 LALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVFYWVMFIGGK 394
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ ++P ++ I ++ L+
Sbjct: 395 VYTVQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|207092118|ref|ZP_03239905.1| hypothetical protein HpylHP_03688 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 272
Score = 42.0 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 31/245 (12%), Positives = 76/245 (31%), Gaps = 2/245 (0%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSE 87
+ I L + + S L +P I I+P + L+ E
Sbjct: 24 ISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHE 83
Query: 88 LVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
L++ ++G+S ++ FV S+L+ ++ + + + ++Q KD D
Sbjct: 84 LLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIR 143
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+++ + +++ + + + + + +
Sbjct: 144 AGE--FGQKLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNL 201
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
K + G + L++ K+ F + + Y K +F +N
Sbjct: 202 YKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK 261
Query: 268 YRAET 272
R
Sbjct: 262 RRFSQ 266
>gi|268679754|ref|YP_003304185.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617785|gb|ACZ12150.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
Length = 341
Score = 42.0 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 114/352 (32%), Gaps = 21/352 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY K++ + ++ + + + L +P +
Sbjct: 5 SRYLLKHFGALFSSLFFILFFITSIVFFI-KITALTAIIQMNFLELGTLYIYLLPRTLVY 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P + + FNL++ +E ++ +G + ++ F++ + L + +L I +
Sbjct: 64 TLPITFFIALCITLFNLSKENETIVLFTLGYNPQKIARLFLLLATGLSLLLILNIFVLIP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+++ + I K + S I + + D
Sbjct: 124 ISKELNSNFIDYKKAEAKFNIKASEFGQKFSQWLVYIEKSDDQKHFSGVTLYQVPTPNED 183
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
++ + + + + + N ++I + +
Sbjct: 184 ERLILANNALIENTDGKLRLNLEEGKIFEFKKNEIEQINFERMHINSQPKAGIGTIQSV- 242
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +F N + + F ++I L +A TLIA S+ + R N+
Sbjct: 243 ------------KEYWNGVFVNSKRAYELAFFLLIALFPLASTLIALSIGIVTYRYNKGG 290
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I +A + F+ + T+ + P +A L+ ILT ++ I L+
Sbjct: 291 IYIAM-FATIFIYFAAATLFST------WHPQSAPLVVFILTFFIAYRIYLK 335
>gi|216263485|ref|ZP_03435480.1| conserved hypothetical integral membrane protein [Borrelia afzelii
ACA-1]
gi|215980329|gb|EEC21150.1| conserved hypothetical integral membrane protein [Borrelia afzelii
ACA-1]
Length = 390
Score = 42.0 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ N+S + +FY I +PL ++ +A S+ L ++ + + I
Sbjct: 283 NFKPYQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISII 342
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 343 ICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 387
>gi|219684946|ref|ZP_03539887.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBr]
gi|219671684|gb|EED28740.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBr]
Length = 429
Score = 42.0 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ +KS + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 322 NFKPYQDKSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISII 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 382 ICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|325117279|emb|CBZ52831.1| hypothetical protein NCLIV_026200 [Neospora caninum Liverpool]
Length = 3000
Score = 42.0 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 24/320 (7%), Positives = 81/320 (25%), Gaps = 27/320 (8%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ + + S S + ++P ++ ++ F + + R
Sbjct: 2186 LRDNFDLSFSESFFYTM-----VFYALVPIALPILVTIIMFII-------VYRVCAWYRK 2233
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
+ + + + E+ + +I ++ +
Sbjct: 2234 STQRKLELLKQTMQYGLYSLAQQLKEKYEEDRVFMIFRYIVLPGESIFRRAAKFMEDMIP 2293
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+ + T + K A + + + +++ +
Sbjct: 2294 IYVTVLFFIYSSTTRNMLSLLDCTYIDFGRAHQAKYFLRAAMSVECTNIWNGPYFKFFAV 2353
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
I +I I + F + E K F + + + E +
Sbjct: 2354 GIV-GLVVWSIGIPLSCFLVLYFNRKRLNSRETRLKYGFLHNGFVKKYWYWEMVVFARK- 2411
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP--- 336
+ + + + ++ R+ + + + I + + F K L
Sbjct: 2412 ----FLVIVVSSVALIPSADRNGS---RIWLAVVIAVIFLIIHLVTQPFDKRSYLTLDRL 2464
Query: 337 ---VAAALIPVILTISLSIL 353
+ ++ +++ I
Sbjct: 2465 ENHSMSIWTITLIVLAMMIG 2484
>gi|90403464|dbj|BAE91930.1| hypothetical transmembrane protein [Brevundimonas diminuta]
Length = 81
Score = 41.6 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ + + + + + + E S+ L +P +I
Sbjct: 3 LIQRYLFRQIGLPIVAAVAALAGIGLLSQSLDQLEVIVER-GQSVWVMVKLTLLALPQLI 61
Query: 64 QQIIPFITLVVNIVV 78
I+P V ++
Sbjct: 62 AVILPIGLFVGALIA 76
>gi|195952581|ref|YP_002120871.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
gi|195932193|gb|ACG56893.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
Length = 353
Score = 41.6 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 4/295 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ K +L T L + L F+ ++ N S +P+++
Sbjct: 2 LLRFITKRFLFTIFLVYLSILALFFIYQIS---NFFITYHMKSPKILFQTILNFLPIVLF 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ V+ L R ++ ++ GI I + PF++ S+L+ +++
Sbjct: 59 YTATINVSISVFVLSHYLKRIKMFLVPQSFGIPISHIFKPFIIVSLLISFGNLMLNEFFI 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ K + +K N + + + N ++ + I +
Sbjct: 119 PNATKELKYIEHVYKKNQKYELGIARNLWIAKEKNNEKTFIGTSLATSNGLFYNIKIINV 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K + + + I + L I + +
Sbjct: 179 KNNKFNYIIKAKKAIVKNGYMDLEQGIETSFSPFREIHFQTLHLKTEINPKDLNLWIKTP 238
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+S E++ K + + + + + F F + + M IA+ +
Sbjct: 239 DEQSLTELV-KTAIVMRKEGLNMFPYISTFIFKLEFSFLPFLMVCIASFYIAKSQ 292
>gi|330443790|ref|YP_004376776.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
gi|328806900|gb|AEB41073.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
Length = 384
Score = 41.6 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 108/356 (30%), Gaps = 13/356 (3%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ----- 65
+Y L + + L F+ + + N S + + Q
Sbjct: 23 RYLLTKFWLSFIALLFLAFIFYTSVHHSLHAIKGNASFFISLSSLKLLLLYYLSQTVLKA 82
Query: 66 --IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + + + F++ E+++ +A G+S+ L+ P + ++ + +
Sbjct: 83 DFLFPQLIAIAATLTLFSMQSKREVLLLQASGLSLKSLITPLIASGGIVTLILYANFQWL 142
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
EK I K+ K + + +K L N+I+ +
Sbjct: 143 YPICEKTSITKEHSEKEIPRKHEDKVPALYLKDQSVLLYSSIDQKSLTLNNIFWIKSPKM 202
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
I K+I + + E K + + F K
Sbjct: 203 IYHVEKLIFSTPSLPIGFNVTEFSDIPTGELTLSGFFDMKEFPEIEFGSYENPFSKIFSA 262
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET------QFYFLIVIPLMLVAMTLIAASVSLE 297
E + +S + QFY++++ PL + +I A + L
Sbjct: 263 GGKNRLSEFYLAIPWSAFGIGLSTKVPQRILLLLSQFYYMLISPLACITAIVIPAYLCLR 322
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
FSR+ + + + + + S +L ++P+ + ++
Sbjct: 323 FSRTPKATLAYLIPLGVTNTFFVFLKAGVVLANSSVLPTFPVMMMPLCILSMVTYY 378
>gi|187918661|ref|YP_001884227.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
gi|119861509|gb|AAX17304.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
Length = 429
Score = 41.2 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 48/155 (30%)
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
++ ++ +E + + + + + + + + +
Sbjct: 272 KELDMRNDLEEDLLHLNFSNTYLNYLYATNSIVDENYFLENLNYMYNLSLNYSPYEDLLA 331
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+FY I +PL ++ +A + + ++ + + I + +
Sbjct: 332 KRSYALFYLEFYQKISLPLSVLFFIFLAFGMGMYSNKKYSIILELVISILICVFYWVMFI 391
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
K + P ++P + I +++ L+
Sbjct: 392 GGKVYTVQYAPNPFLVTVLPNVALIFAGLILFLRL 426
Score = 40.8 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 3/241 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIITEFCKYFLITFLFFFFVFFINQILFFMRILLQNY-VPFFKAFIFVIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ + +E++ R+IGISI+ LL PF +++ + ++ + + G
Sbjct: 70 PFAALLSVILTIYRFKLNNEILAFRSIGISIFDLLVPFFKLGVVIALIAFILNDFLLPLG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + K+ + G K ++ +
Sbjct: 130 SIGRLKIFNEIKEEIPHLILKP--YSSKQYGDLIFVSGEKSDTGYRNVTFFDNTRLKGYD 187
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ R+ Y L V+ +K Q
Sbjct: 188 RIFMARELNIQKENYQVYFILNDVLSIALTEDESGFYDYFYADRMKYSIDQVTFSDSWLL 247
Query: 248 S 248
S
Sbjct: 248 S 248
>gi|51599059|ref|YP_073247.1| hypothetical protein BG0833 [Borrelia garinii PBi]
gi|51573630|gb|AAU07655.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBi]
Length = 429
Score = 41.2 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ +KS + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 322 NFKPYQDKSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISII 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 382 ICVFYWVMFIGGKVYTVQYAPNPIIITILPNLILIIAGAILFLRL 426
>gi|111115642|ref|YP_710260.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
gi|110890916|gb|ABH02084.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
Length = 429
Score = 41.2 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ N+S + +FY I +PL ++ +A S+ L ++ + + I
Sbjct: 322 NFKPYQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISII 381
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 382 ICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|119953584|ref|YP_945794.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
gi|119862355|gb|AAX18123.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
Length = 429
Score = 40.8 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 74/242 (30%), Gaps = 3/242 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P+II
Sbjct: 11 YIIIEFFKYFLITFLFFFFVFFINQILFFMRILLQNY-VPFLKAFIFVIYSLPMIIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ + +E++ R+IGISI+ LL PF +++ + + + + + G
Sbjct: 70 PFAALLSVILTIYRFKLNNEILAFRSIGISIFNLLVPFFKLGVVIALISFITNDFLLPLG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + K+ + G K ++ +
Sbjct: 130 SIGRLKIFNEIKEEIPHLILKP--YSSKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGYD 187
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
++ R+ Y L V+ +K Q
Sbjct: 188 RILMARELNIQKENYQVYFILNDVLSIALTEDESGFYDYFYADRMKYSIDQVTFSDSWLL 247
Query: 248 SF 249
S+
Sbjct: 248 SY 249
Score = 38.9 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 33/85 (38%)
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
FY I +PL ++ +A + + ++ + + I + + K +
Sbjct: 342 FYQKISLPLSVLFFIFLAFGMGMYSNKKYSIILELVISILICVFYWVMFIGGKVYTVQYS 401
Query: 334 LLPVAAALIPVILTISLSILILLQK 358
P ++P ++ I +++ L+
Sbjct: 402 PNPFLITVLPNVMLIFAGLILFLRL 426
>gi|157738400|ref|YP_001491084.1| hypothetical protein Abu_2200 [Arcobacter butzleri RM4018]
gi|157700254|gb|ABV68414.1| conserved hypothetical membrane protein [Arcobacter butzleri
RM4018]
Length = 338
Score = 40.8 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 101/338 (29%), Gaps = 17/338 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + T G + VI L + + + + + + +P II
Sbjct: 3 LQRYLYSQLAITFFPIFFGLFFITAVIFLV-KISALTAIITVNFFELFRIFSYTIPDIIF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ L+ EL + + G++ +++L F+ ++LL + ++V +
Sbjct: 62 YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K+ + + + I +N+++ED + +
Sbjct: 122 PKSDFERKQFVNIKKNEANFNIKSGEFGQKFGDWLIFIN------DKKNNLYEDVKLLKV 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K N + N + ++ + + N D
Sbjct: 176 QKDNDQFVISKNAVLDNDNGVLSIRLDEGKAFLIDKEEFNQINYEAMYINDSISTAKTTV 235
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ ++ + + + + + + + R +
Sbjct: 236 FTTTYDYWKNNIKNKVDLDDLTFFI---------LTSFFPLMSLFLVITFGYFNPRYEKN 286
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ Y + S + Y +I + L + +
Sbjct: 287 -RAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWL 323
>gi|257457658|ref|ZP_05622825.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445044|gb|EEV20120.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 229
Score = 40.8 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 1/141 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+ Y K L L + FV ++ + + A+L +P +
Sbjct: 7 KLLFLYIVKEMLLYFFVCFLFLFFIFFVNNILLLAEDVLSKQ-APFKDVALLMLYSLPAV 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I PF L+ ++ E + A+GIS L+ P ++ +L+ I + +
Sbjct: 66 IANAAPFAALIGTLMGIGRFVSDLEFLSMNALGISPRFLMVPVLLVGLLVSIVSFFTNDV 125
Query: 123 IATSGEKIGIDLIQQWKDNGD 143
+ + + +
Sbjct: 126 LLPASAVNFRRVYWDIATSTP 146
>gi|289678195|ref|ZP_06499085.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 95
Score = 40.8 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI 98
Q I+P + ++ + L SE+ + A G+S
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQ 95
>gi|331699837|ref|YP_004336076.1| hypothetical protein Psed_6121 [Pseudonocardia dioxanivorans
CB1190]
gi|326954526|gb|AEA28223.1| hypothetical protein Psed_6121 [Pseudonocardia dioxanivorans
CB1190]
Length = 457
Score = 40.8 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVAAAL 341
+ +MT IA ++ R + V G L+ + + G SG + A +
Sbjct: 204 LFTSMTGIAVGLAAGSRRVGTRVLWVLGGYLCAVALHALWNGSATLGGSGTFITVYVAIM 263
Query: 342 IPVILTISLSILILLQKE 359
+PV + + I+ ++E
Sbjct: 264 LPVFVATIVLIIWQRRRE 281
>gi|314922390|gb|EFS86221.1| DoxX protein [Propionibacterium acnes HL001PA1]
gi|314965427|gb|EFT09526.1| DoxX protein [Propionibacterium acnes HL082PA2]
gi|314982838|gb|EFT26930.1| DoxX protein [Propionibacterium acnes HL110PA3]
gi|315091157|gb|EFT63133.1| DoxX protein [Propionibacterium acnes HL110PA4]
gi|315094243|gb|EFT66219.1| DoxX protein [Propionibacterium acnes HL060PA1]
gi|315104896|gb|EFT76872.1| DoxX protein [Propionibacterium acnes HL050PA2]
gi|327329222|gb|EGE70982.1| DoxX family protein [Propionibacterium acnes HL103PA1]
Length = 270
Score = 40.5 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 281 PLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
++ + + A + L F+R II + F+ + I K+ G G L + A
Sbjct: 177 WVLGICECIAAVCIILGLFTRVAGAGIIAIMVLTLTFIFWGSFAIFKTMGFKGELELLLA 236
Query: 340 ALIPVILTISLSIL 353
A ++L +
Sbjct: 237 ACGVLLLFLGAGGW 250
>gi|282853300|ref|ZP_06262637.1| DoxX protein [Propionibacterium acnes J139]
gi|282582753|gb|EFB88133.1| DoxX protein [Propionibacterium acnes J139]
Length = 268
Score = 40.5 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 281 PLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
++ + + A + L F+R II + F+ + I K+ G G L + A
Sbjct: 175 WVLGICECIAAVCIILGLFTRVAGAGIIAIMVLTLTFIFWGSFAIFKTMGFKGELELLLA 234
Query: 340 ALIPVILTISLSIL 353
A ++L +
Sbjct: 235 ACGVLLLFLGAGGW 248
>gi|237751254|ref|ZP_04581734.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229372620|gb|EEO23011.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 342
Score = 40.5 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 34/322 (10%), Positives = 92/322 (28%), Gaps = 11/322 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y + + F + +I L + S+ L +P
Sbjct: 5 LLKKYVLRSIGEMFFPFFFVLFFIASIILLL-NIAMLTNGVKLSMIDLMQLYLYGIPANT 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I I+ L+ SE+++ ++G+S ++ + +L+ + +
Sbjct: 64 FFVIALTFYSACILGLSKLSYESEMLVFFSLGVSPKDIIRILLPLCVLVSFVLCMFSFVM 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ D I P ++ + ++
Sbjct: 124 TPNSKQAYKDFIS----------LKKNEINIDLKPGDFGQKIGDWLVYIDSKDKNVFHGL 173
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ N KD + + ++E N I+ +
Sbjct: 174 VLYANTTEQIKDNFIIAKTGKIENRQGILELVLYDGDAYFNDKDFLQKIEFKEMIVRNFL 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + S + + +Q + + PL+ + + L + F ++
Sbjct: 234 DGTQDSDYNVFTYWASAFQGDYKQLKRFSQSFCTSLFPLVSIFLILFFGIKNPRFHKNYA 293
Query: 304 PRIIVAYGIFSGFMLYTIITIM 325
++ G F +Y +
Sbjct: 294 YFYVLGSGSFYLLAMYVLSMNF 315
>gi|327334822|gb|EGE76533.1| DoxX family protein [Propionibacterium acnes HL097PA1]
Length = 272
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 173 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 232
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 233 LELLLAACGVLLLFLGAGGW 252
>gi|315082152|gb|EFT54128.1| DoxX protein [Propionibacterium acnes HL078PA1]
Length = 268
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 169 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 228
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 229 LELLLAACGVLLLFLGAGGW 248
>gi|313802721|gb|EFS43939.1| DoxX protein [Propionibacterium acnes HL110PA2]
gi|313806379|gb|EFS44886.1| DoxX protein [Propionibacterium acnes HL087PA2]
gi|313817533|gb|EFS55247.1| DoxX protein [Propionibacterium acnes HL046PA2]
gi|313824098|gb|EFS61812.1| DoxX protein [Propionibacterium acnes HL036PA2]
gi|313826465|gb|EFS64179.1| DoxX protein [Propionibacterium acnes HL063PA1]
gi|314961352|gb|EFT05453.1| DoxX protein [Propionibacterium acnes HL002PA2]
gi|314989070|gb|EFT33161.1| DoxX protein [Propionibacterium acnes HL005PA3]
gi|315078380|gb|EFT50411.1| DoxX protein [Propionibacterium acnes HL053PA2]
gi|315082705|gb|EFT54681.1| DoxX protein [Propionibacterium acnes HL027PA2]
gi|315086064|gb|EFT58040.1| DoxX protein [Propionibacterium acnes HL002PA3]
gi|315087649|gb|EFT59625.1| DoxX protein [Propionibacterium acnes HL072PA1]
gi|327333303|gb|EGE75023.1| DoxX family protein [Propionibacterium acnes HL096PA3]
Length = 270
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 171 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 230
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 231 LELLLAACGVLLLFLGAGGW 250
>gi|313772787|gb|EFS38753.1| DoxX protein [Propionibacterium acnes HL074PA1]
gi|313810927|gb|EFS48641.1| DoxX protein [Propionibacterium acnes HL083PA1]
gi|313815335|gb|EFS53049.1| DoxX protein [Propionibacterium acnes HL059PA1]
gi|313828773|gb|EFS66487.1| DoxX protein [Propionibacterium acnes HL063PA2]
gi|313831692|gb|EFS69406.1| DoxX protein [Propionibacterium acnes HL007PA1]
gi|313840383|gb|EFS78097.1| DoxX protein [Propionibacterium acnes HL086PA1]
gi|314916050|gb|EFS79881.1| DoxX protein [Propionibacterium acnes HL005PA4]
gi|314917202|gb|EFS81033.1| DoxX protein [Propionibacterium acnes HL050PA1]
gi|314921701|gb|EFS85532.1| DoxX protein [Propionibacterium acnes HL050PA3]
gi|314955039|gb|EFS99445.1| DoxX protein [Propionibacterium acnes HL027PA1]
gi|314959078|gb|EFT03180.1| DoxX protein [Propionibacterium acnes HL002PA1]
gi|314977034|gb|EFT21129.1| DoxX protein [Propionibacterium acnes HL045PA1]
gi|315101991|gb|EFT73967.1| DoxX protein [Propionibacterium acnes HL046PA1]
gi|327331315|gb|EGE73054.1| DoxX family protein [Propionibacterium acnes HL096PA2]
gi|327450249|gb|EGE96903.1| DoxX protein [Propionibacterium acnes HL043PA2]
gi|327454517|gb|EGF01172.1| DoxX protein [Propionibacterium acnes HL087PA3]
gi|327456587|gb|EGF03242.1| DoxX protein [Propionibacterium acnes HL083PA2]
gi|328755569|gb|EGF69185.1| DoxX protein [Propionibacterium acnes HL087PA1]
gi|328756897|gb|EGF70513.1| DoxX protein [Propionibacterium acnes HL025PA2]
gi|328761128|gb|EGF74672.1| DoxX family protein [Propionibacterium acnes HL099PA1]
Length = 270
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 171 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 230
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 231 LELLLAACGVLLLFLGAGGW 250
>gi|289424505|ref|ZP_06426288.1| DoxX protein [Propionibacterium acnes SK187]
gi|289428911|ref|ZP_06430591.1| DoxX protein [Propionibacterium acnes J165]
gi|289155202|gb|EFD03884.1| DoxX protein [Propionibacterium acnes SK187]
gi|289157912|gb|EFD06135.1| DoxX protein [Propionibacterium acnes J165]
gi|313793190|gb|EFS41257.1| DoxX protein [Propionibacterium acnes HL110PA1]
gi|313814574|gb|EFS52288.1| DoxX protein [Propionibacterium acnes HL025PA1]
gi|313822006|gb|EFS59720.1| DoxX protein [Propionibacterium acnes HL036PA1]
gi|314926583|gb|EFS90414.1| DoxX protein [Propionibacterium acnes HL036PA3]
gi|314964602|gb|EFT08702.1| DoxX protein [Propionibacterium acnes HL082PA1]
gi|314980304|gb|EFT24398.1| DoxX protein [Propionibacterium acnes HL072PA2]
gi|314987389|gb|EFT31480.1| DoxX protein [Propionibacterium acnes HL005PA2]
gi|315106309|gb|EFT78285.1| DoxX protein [Propionibacterium acnes HL030PA1]
gi|327445220|gb|EGE91874.1| DoxX protein [Propionibacterium acnes HL013PA2]
gi|327457139|gb|EGF03794.1| DoxX protein [Propionibacterium acnes HL092PA1]
gi|328758420|gb|EGF72036.1| DoxX protein [Propionibacterium acnes HL020PA1]
gi|332674653|gb|AEE71469.1| hypothetical protein PAZ_c02660 [Propionibacterium acnes 266]
Length = 268
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 169 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 228
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 229 LELLLAACGVLLLFLGAGGW 248
>gi|295129814|ref|YP_003580477.1| DoxX protein [Propionibacterium acnes SK137]
gi|291375253|gb|ADD99107.1| DoxX protein [Propionibacterium acnes SK137]
gi|313765297|gb|EFS36661.1| DoxX protein [Propionibacterium acnes HL013PA1]
gi|313834426|gb|EFS72140.1| DoxX protein [Propionibacterium acnes HL056PA1]
gi|314931092|gb|EFS94923.1| DoxX protein [Propionibacterium acnes HL067PA1]
gi|314969701|gb|EFT13799.1| DoxX protein [Propionibacterium acnes HL037PA1]
gi|314974767|gb|EFT18862.1| DoxX protein [Propionibacterium acnes HL053PA1]
gi|314985480|gb|EFT29572.1| DoxX protein [Propionibacterium acnes HL005PA1]
gi|315097315|gb|EFT69291.1| DoxX protein [Propionibacterium acnes HL038PA1]
gi|315099502|gb|EFT71478.1| DoxX protein [Propionibacterium acnes HL059PA2]
gi|315110086|gb|EFT82062.1| DoxX protein [Propionibacterium acnes HL030PA2]
gi|327447305|gb|EGE93959.1| DoxX protein [Propionibacterium acnes HL043PA1]
Length = 268
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 169 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 228
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 229 LELLLAACGVLLLFLGAGGW 248
>gi|50841737|ref|YP_054964.1| hypothetical protein PPA0245 [Propionibacterium acnes KPA171202]
gi|50839339|gb|AAT82006.1| hypothetical protein PPA0245 [Propionibacterium acnes KPA171202]
Length = 268
Score = 40.5 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
Y + ++ + + A + L F+R II + F+ + I K+ G G
Sbjct: 169 YAQSGVWVLGICECIAAVCIILGLFTRVAGAGIIAIMVLSLTFIFWGSFAIFKTMGFKGE 228
Query: 334 LLPVAAALIPVILTISLSIL 353
L + AA ++L +
Sbjct: 229 LELLLAACGVLLLFLGAGGW 248
>gi|207108562|ref|ZP_03242724.1| hypothetical protein HpylH_03299 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 206
Score = 40.5 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 2/194 (1%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
S L +P I I+P + L+ EL++ ++G+S ++ F
Sbjct: 4 VSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAF 63
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
V S+L+ ++ + + + ++Q KD D +++
Sbjct: 64 VPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIRAGE--FGQKLGDWLVYVD 121
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ +++ + + + + + + K + G +
Sbjct: 122 KAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDF 181
Query: 226 TTLNIPIKMDGFQK 239
L++ K+ F
Sbjct: 182 EELHLRNKLKSFNS 195
>gi|153827726|ref|ZP_01980393.1| membrane protein, putative [Vibrio cholerae MZO-2]
gi|149737797|gb|EDM52702.1| membrane protein, putative [Vibrio cholerae MZO-2]
Length = 144
Score = 40.1 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
RA+ + + I + + + +T++ +S R + + I + ++ KS
Sbjct: 38 RRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAK-MGPAILIYLTYFLALSATKS 96
Query: 328 FGKSGILLPVAAAL 341
+ G L +
Sbjct: 97 AIEDGSLPVIIGLW 110
>gi|317481020|ref|ZP_07940099.1| drug efflux protein [Bacteroides sp. 4_1_36]
gi|316902733|gb|EFV24608.1| drug efflux protein [Bacteroides sp. 4_1_36]
Length = 798
Score = 40.1 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 10/256 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN----QMGELPNYSISRGAVLAATRV 59
IL R K +L L LV + L+E + +++ ++A V
Sbjct: 412 ILHRRNLKAFLSVLAATLTTMGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLMVALFFV 471
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I++I + + R +++ + ++ F V +
Sbjct: 472 PSMIEKI------GLVRRITGKKRRLVLPGLTQTFKTRLGRIFRRFPVYFSCCYSALIRF 525
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + + + W N + + P
Sbjct: 526 LCRWRWAVCLLLLLGFGLPVFLLPDKLEGGGKWEAAYNKVFGSDTYKESVKPIVDKALGG 585
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +K + ++ L + + + T L+ ++ F
Sbjct: 586 SLRLFIQKVYEGSYFTRNEEVVLYANANLPNGSTLEQMNTLMKRMETYLSRFKEIRQFHT 645
Query: 240 FSEQFASRSFYEIIKK 255
S KK
Sbjct: 646 SIYSPRRASMQIYFKK 661
>gi|149193964|ref|ZP_01871062.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
gi|149135917|gb|EDM24395.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
Length = 323
Score = 40.1 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 39/312 (12%), Positives = 90/312 (28%), Gaps = 1/312 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y +L L ++ +I + + + + +P I+ +
Sbjct: 7 YILNQFLPLFLTIFFVISAIISLIYII-TISNITSKIQITFIELLKFYILSMPQILLITL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+ I ++ L+ T EL+ ++G LLNP ++ +ILL + ++
Sbjct: 66 AISFFISAINLYSKLSETQELIALFSLGFKPKTLLNPILLLAILLTFINLFILFISIPYA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +L + K Q + G + +++ + I +
Sbjct: 126 KMNFNNLKNEKKQEAKFNFQSSQVSQQFGDWVIFANKGKNNSFTKIYLYSPKENKFIISQ 185
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
N + K++ L Q ++ N + I + F+ + +
Sbjct: 186 NAQLQNKNSVLNFALTIGNIYDFNKSMQIKFNKMEINQLIPKVKISIFNFKDYFKYNKKE 245
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + + + I + VSL +I
Sbjct: 246 FAKYLPIALLPITLFFFIPLISFFHPRLNKSHPLFYAITILSIYSIVSLSNKNFILSILI 305
Query: 308 VAYGIFSGFMLY 319
G +LY
Sbjct: 306 SVLFFIIGGILY 317
>gi|257457657|ref|ZP_05622824.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445043|gb|EEV20119.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 116
Score = 39.7 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQF--YFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S +++ K + + + IP L+A ++S + +
Sbjct: 1 MSSFDLYKDIKEKQTQDEDKRILNLYWMEFHKKFSIPFGAFFFVLLAFAIS-SAGKVHNQ 59
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
G+ + + ++ +A +P I+ + S+++L
Sbjct: 60 GAGFFLGLLIAVAYWALFMGGQTLCLRLNWNGTSAMWVPNIMVFAASVVLL 110
>gi|32266101|ref|NP_860133.1| hypothetical protein HH0602 [Helicobacter hepaticus ATCC 51449]
gi|32262150|gb|AAP77199.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 339
Score = 39.7 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 40/348 (11%), Positives = 101/348 (29%), Gaps = 21/348 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F + + F L + + V+ L +I + + S L +P + I
Sbjct: 4 RYLFMSFAQIFFPFFLVLLFIASVVLLIDIAGR-TYVIKMSFIDLGTLFLYLIPGSLFFI 62
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP ++ L EL++ ++G ++ F+ ++L I + +
Sbjct: 63 IPITFFAALVLSVAKLTYDYELMVCFSLGAKPLDIVKFFLPITLLATIILFVFSLVMLPL 122
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + Q K + D ++ + + K+I ++ +
Sbjct: 123 ANSASKNFVAQKKADIDVNIKSGEFGQKLGDWLVYVDSAHKRIYKNLILFSENGFEGDTF 182
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + + + + + L + +
Sbjct: 183 IVAESGKTNNNQGLFELNLQ----------EGSAYFASPEELKRVDYHQMSVRQNVSEPQ 232
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
Y++ + S+ R Q + + PL + + + + F +
Sbjct: 233 LRSYDLFEYWGNVFTSDSHQKPRKLAQAVMVSLFPLTSLFLVPLFGIANPRFHSNMSYFY 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++A + + P+ +I L +LS +
Sbjct: 293 VIASVALYFVLTHIASEHF----------PLIGMIIIPFLWCALSFGL 330
>gi|238499107|ref|XP_002380788.1| ferric reductase transmembrane component 4 precursor, putative
[Aspergillus flavus NRRL3357]
gi|220692541|gb|EED48887.1| ferric reductase transmembrane component 4 precursor, putative
[Aspergillus flavus NRRL3357]
Length = 794
Score = 39.7 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 20/276 (7%), Positives = 76/276 (27%), Gaps = 21/276 (7%)
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
E + + + ++ +LV+ +A + Q
Sbjct: 200 ESPVLLSHSYYKRAHKSYRFGWGLMGYWGGILVLGMMAKLMALQSMHRKQTKPKAMTSVL 259
Query: 147 SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV 206
+ + + I +++ + + + + + ++ +
Sbjct: 260 HYLRTYFVVPASFAPILPHHQQLYYWHTVPRRLDLLIVLGFWALCIILACVDYQSFSGNI 319
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF-------------------ASR 247
++ V + + + + F + F +
Sbjct: 320 EMSSVFQQNWQYSSDRTGILSYACLPFLWLFAGRNNIFLWATNFSVQSFNIFHRHVAWAC 379
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ I+ +++S + +++ + + + + M+ + R +
Sbjct: 380 TILAIVHSINYSVVFAYYGEFQSVWLQEYWYMGVVATILMSFMLVQSLTMLRRIGYETFL 439
Query: 308 VAYGIFSGFMLYTIITIMKSFGK--SGILLPVAAAL 341
+ + +F+ ++Y + G +G L P+ A
Sbjct: 440 IIHIVFAIVVVYALFRHTSFDGTKWNGYLWPMVAIW 475
>gi|6636502|gb|AAF20202.1|AF205944_1 P-Type cation-transporting ATPase [Blastocladiella emersonii]
Length = 1078
Score = 39.7 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 15/247 (6%), Positives = 70/247 (28%), Gaps = 10/247 (4%)
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
T++ + P + L + + + + + + + G + +
Sbjct: 804 TLMKLQPRRPVDGESIEHLRARREFDNRFKNFAGGDTTDENEIVRPLTFGERMKRLTSGE 863
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + ++ + + ++ + + + + + I
Sbjct: 864 FWSKWAFASADGDMLVDWNTLSWSYLEAGVIQYVGAQIAFFVVFYMYQTKDKVQLKITPT 923
Query: 236 GFQKFSEQFASR-----SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + ++ F++ + L+
Sbjct: 924 DLFNCASNEGWTGKKSCTLGNGMVYSVADQNESLAQAQSVWFFGIFVMQAWNLFACKCLM 983
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
++ ++ ++ + G+ ++ I +FG S L P+ +++ +
Sbjct: 984 SSPFTMHVLKNKHTFSSLVGGLAISVLVVYCPGINTAFGCSSWLNPLY-----ILIPFGV 1038
Query: 351 SILILLQ 357
+++ L
Sbjct: 1039 GMVLFLY 1045
>gi|260791574|ref|XP_002590804.1| hypothetical protein BRAFLDRAFT_78220 [Branchiostoma floridae]
gi|229276000|gb|EEN46815.1| hypothetical protein BRAFLDRAFT_78220 [Branchiostoma floridae]
Length = 875
Score = 39.3 bits (89), Expect = 0.91, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 8/242 (3%)
Query: 97 SIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS 156
S++++L+ V I + +I + +DL + D K ++
Sbjct: 18 SVFRMLSDTQVPYFTAIIIVLCLIPLGNIYNDAKILDLQHKRVDLHHKMVEYRRQKVEFM 77
Query: 157 NPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY 216
++ EN + K+ + + A ++ V+EY +
Sbjct: 78 QTILTATDTYTQVTQENGWLWGVKRVITHTVQKLKYTPEQVHAY----IGRMMDVIEYSW 133
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF-- 274
G + + + I+ +K +F ++R Q
Sbjct: 134 GLVLCFLVAAVVVTVIRWLDRRKAYIFAMMLTFVLYTYVYFNLQPIPDMPDWRWMAQPIQ 193
Query: 275 -YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
+ P +AA + L R+ R + +GF L+ + G +
Sbjct: 194 DHDSPNTPFSWTVFITVAAVLVL-LIRAVDIRQAFTIAMVAGFALFVFAYSLLHLGGTFA 252
Query: 334 LL 335
L
Sbjct: 253 LS 254
>gi|294670273|ref|ZP_06735166.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308010|gb|EFE49253.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 87
Score = 39.3 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ GI G + + + + AAA++P + ++ ++ ++E
Sbjct: 31 GLETFAGICLGLAFHFAGRLFGFTSQLYGVPAFAAAMLPTAAFAAWAVWLIRKQE 85
>gi|224438206|ref|ZP_03659141.1| hypothetical protein HcinC1_09510 [Helicobacter cinaedi CCUG 18818]
Length = 339
Score = 39.3 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 44/343 (12%), Positives = 98/343 (28%), Gaps = 14/343 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y F + + F L + V+ L +I + + S L +P +
Sbjct: 2 LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGR-TYVVKMSFLDLGTLFMYLIPSSLF 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IIP ++ L EL++ ++G ++ F+ ++L + + +
Sbjct: 61 FIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILL 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + Q K + D ++ + + + ++ +
Sbjct: 121 PLTTSASKNFVAQKKADIDVNIKPGEFGQKLGDWLVYVDSVDNRKYQNLVLFSENGFEGD 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ +L Y P + N +
Sbjct: 181 T-----FIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSE----- 230
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S Y++I + R Q + + PL+ + + + + F RSN
Sbjct: 231 PQLSGYDLIAYWKEAFSLESRQKLRKLAQAVMVSLFPLVSIFLIPLFGIANPRF-RSNMS 289
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
V + F+L I +F G++
Sbjct: 290 YFYVIGSVALYFVLMYI--ASDNFALVGMISIPILWFFGGFFL 330
>gi|313144652|ref|ZP_07806845.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129683|gb|EFR47300.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 341
Score = 39.3 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 44/343 (12%), Positives = 98/343 (28%), Gaps = 14/343 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y F + + F L + V+ L +I + + S L +P +
Sbjct: 4 LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGR-TYVVKMSFLDLGTLFMYLIPSSLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IIP ++ L EL++ ++G ++ F+ ++L + + +
Sbjct: 63 FIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + Q K + D ++ + + + ++ +
Sbjct: 123 PLTTSASKNFVAQKKADIDVNIKPGEFGQKLGDWLVYVDSVDNRKYQNLVLFSENGFEGD 182
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ +L Y P + N +
Sbjct: 183 T-----FIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSE----- 232
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S Y++I + R Q + + PL+ + + + + F RSN
Sbjct: 233 PQLSGYDLIAYWKEAFSLESRQKLRKLAQAVMVSLFPLVSIFLIPLFGIANPRF-RSNMS 291
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
V + F+L I +F G++
Sbjct: 292 YFYVIGSVALYFVLMYI--ASDNFALVGMISIPILWFFGGFFL 332
>gi|312131631|ref|YP_003998971.1| proteiN-disulfide reductase [Leadbetterella byssophila DSM 17132]
gi|311908177|gb|ADQ18618.1| Protein-disulfide reductase [Leadbetterella byssophila DSM 17132]
Length = 653
Score = 38.9 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
M ++ +VS + + YGI + + I + G S L ++
Sbjct: 220 FMPCIYPIMPMTVSFFTKQKGGKFKAIFYGISIMVIFALMGLITMALGASF-LNALSTHW 278
Query: 342 IPVILTISL----SILIL 355
IP ++ L +L
Sbjct: 279 IPNLIFFLLFIAFGFALL 296
>gi|168204628|ref|ZP_02630633.1| hypothetical protein AC3_0845 [Clostridium perfringens E str.
JGS1987]
gi|170663786|gb|EDT16469.1| hypothetical protein AC3_0845 [Clostridium perfringens E str.
JGS1987]
Length = 721
Score = 38.9 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 46/348 (13%), Positives = 102/348 (29%), Gaps = 28/348 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF K + L+G + + F+ L + + + S V P I I
Sbjct: 16 YFSKSNFIIYGFRLVGWVFIKFLGFLVDKLEDVVK------SVTVVTDFFNSPEITNLIN 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
F L+ ++V + +LVI++ S + + I++ +
Sbjct: 70 KFSPLLYLLLVASIIFIGYQLVINKKFDRSKLPMNIILALCIIVVMPLAMS--------- 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
N + ++ I +D T ID K
Sbjct: 121 -------KANILTNKVIGEIQGESQFSDQIISNNVTDLYLLDQANFPIKDDGTVGDIDPK 173
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
N + + I D+ K+ ++ I K LN + + + ++
Sbjct: 174 NNVGNNITKINPIEEIDRDKVNNKKVFENEIIFDSKGEAKLNKIVGLFKWDDEYYRYH-- 231
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ + + + + I + V T +A + R Q
Sbjct: 232 --INYMTIIVTLLITAFVMIFTSVKMIKLSIELAFSKVMTTFVAVADLSNGQRMRQSVNG 289
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ IF + ++ + G + L + + + + +I ++
Sbjct: 290 I-ISIFVAMISTMLMLKLYILGTAY-LSDKISGIGTICAMLGCAIFVI 335
>gi|332088229|gb|EGI93350.1| hypothetical protein SD15574_3352 [Shigella dysenteriae 155-74]
Length = 238
Score = 38.5 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 11/225 (4%)
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
L QQ + D ++ + N + + + +T
Sbjct: 1 MYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYT 60
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQK 239
S + D V L Y D N N+ + ++ +
Sbjct: 61 STANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQ 120
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+K + + + L + M L+A S+S
Sbjct: 121 SPNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKP 171
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + ++ + + Y + ++ +G + + +
Sbjct: 172 RQGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 215
>gi|291276764|ref|YP_003516536.1| YjgP/YjgQ family permease [Helicobacter mustelae 12198]
gi|290963958|emb|CBG39797.1| putative integral membrane protein, permease YjgP/YjgQ family
[Helicobacter mustelae 12198]
Length = 338
Score = 38.5 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 34/351 (9%), Positives = 96/351 (27%), Gaps = 22/351 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F + + V+ L + + + ++ +P + II
Sbjct: 5 YLFGSIAQIFFPFFIVLFFISSVVLLIS-IANITLVVKMNFMDLLLVFLYLMPGTVFFII 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ L+ EL++ ++G+S ++L F+ + ++ + + +
Sbjct: 64 PITFFAACVLGLSRLSFDYELLVFFSLGVSPRKILAYFIPIAGIVSLVLLFFSLALIPLS 123
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ D I + + D ++ + I + ++
Sbjct: 124 KSAYSDFIAEKRTKIDVNIRAGDLGQKLGDWLVYIDSIKDNEYRDLVLFSGSDLGQESFV 183
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
R + + + L + + + +
Sbjct: 184 VAQKGRVENLAGVFRLSLQ----------NGDAYFAKNNELQKVNFQNMMIQSEIKKINL 233
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S Y+++ + R +Q + PL + + + F R+ I
Sbjct: 234 SSYDLVAYWKSA-FEGKKSQARRFSQAIMTSLFPLASIFFIPLFGIANPRFQRNLSYVYI 292
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ + ++ + P + L +K
Sbjct: 293 LSAVVGYFAGVHILSENA----------PFFGIFALPLAWFFLGYYFFRKK 333
>gi|167534874|ref|XP_001749112.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772536|gb|EDQ86187.1| predicted protein [Monosiga brevicollis MX1]
Length = 346
Score = 38.5 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 27/75 (36%)
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L + +A +S+ S + V I L +++ S S L +
Sbjct: 258 LSVCQSVWLAGCLSVYLSVYLSVYLSVYLSICLSVSLSVCLSVCLSICLSIWLSIWLSIW 317
Query: 342 IPVILTISLSILILL 356
+ + L L+ +LL
Sbjct: 318 LSIYLAGWLAGWLLL 332
>gi|118388408|ref|XP_001027301.1| cation channel family protein [Tetrahymena thermophila]
gi|89309071|gb|EAS07059.1| cation channel family protein [Tetrahymena thermophila SB210]
Length = 1556
Score = 38.5 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 19/223 (8%), Positives = 57/223 (25%), Gaps = 5/223 (2%)
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
K + + + D+ + + + + ++ I ++ + +
Sbjct: 91 HLKKDQNNLDKTSDSQNFNQYENRYGSKSVTFTSNLKIQNSRVTSSSQVSIHKKPNPYQG 150
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ I KV + + + L + ++ +
Sbjct: 151 QEIFKKLYYNYTQIYEGK----DKVADQTNFPLIMKLKDIALKWVNSLQSRRQKVLNELA 206
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ ++ ++K H + + L + S + +
Sbjct: 207 YNLINDKSFINDTSKGIQKHENLINATKNTIFHSWISQKVNCLCSCIPVFSPSNTYKFLW 266
Query: 307 IVAYGIFSGFMLYTI-ITIMKSFGKSGILLPVAAALIPVILTI 348
+ F LY + I + I+ + IP L +
Sbjct: 267 DLIQLFVIIFCLYFVPINFVFKMRFKDIIPLMLGWFIPAFLLV 309
>gi|290559791|gb|EFD93115.1| hypothetical protein BJBARM5_0125 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 782
Score = 38.5 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI--ITIMKSFGKSGILLPVAAA 340
+ + I + + + + + I + F++Y + + +G L +
Sbjct: 106 TFIVLAFIGLILGILALVKSPMSVRLMGLIAALFLIYILFANDTGLTNAVNGFLHINILS 165
Query: 341 LIPVILT---ISLSILILLQ 357
++P+IL I + I+++L+
Sbjct: 166 ILPIILGAVSILVIIVLILR 185
>gi|332086636|gb|EGI91776.1| hypothetical protein SB521682_3570 [Shigella boydii 5216-82]
Length = 238
Score = 38.5 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 11/225 (4%)
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
L QQ + D ++ + N + + + +T
Sbjct: 1 MYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYT 60
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQK 239
S + D V L Y D N N+ + ++ +
Sbjct: 61 STANRTRIFRARSVDVVDPSTEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQ 120
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+K + + + L + M L+A S+S
Sbjct: 121 SPNVK---------RKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKP 171
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + ++ + + Y + ++ +G + + +
Sbjct: 172 RQGRFSTLLPLTLLFIAIFYG-GDVCRTLVANGAIPLIPGLWLVP 215
>gi|148271769|ref|YP_001221330.1| hypothetical protein CMM_0590 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829699|emb|CAN00615.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 138
Score = 38.5 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 26/63 (41%)
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + +F F+ + ++ G S P +ALI + + ++++
Sbjct: 40 LVSKLKHAGIGAGFLVVALFFAFIAFLVLVAAAILGLSEAFSPWLSALIVAGVFLLITVV 99
Query: 354 ILL 356
+ L
Sbjct: 100 LAL 102
>gi|170783145|ref|YP_001711479.1| putative integral membrane protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157715|emb|CAQ02917.1| putative integral membrane protein [Clavibacter michiganensis
subsp. sepedonicus]
Length = 138
Score = 38.5 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 26/63 (41%)
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + +F F+ + ++ G S P +ALI + + ++++
Sbjct: 40 LVTKLKHAGIGAGFLVVALFFAFIAFLVLVAAAILGLSEAFSPWLSALIVAGVFLLITVV 99
Query: 354 ILL 356
+ L
Sbjct: 100 LAL 102
>gi|224418451|ref|ZP_03656457.1| hypothetical protein HcanM9_04150 [Helicobacter canadensis MIT
98-5491]
gi|313141983|ref|ZP_07804176.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131014|gb|EFR48631.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 341
Score = 38.5 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 36/350 (10%), Positives = 100/350 (28%), Gaps = 20/350 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + + + V+ I + + S L +PL+I +I
Sbjct: 6 YLFHSFAQIFFPIFFVLFFIASVVIFIRIAG-VTFVVQISFFELLSLYFYTLPLMIFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V + L+ EL + A+G++ +++ F + L+ ++ +
Sbjct: 65 PLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFFPIAALVSFSLFILSLVLTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K++ + ++ + + + EN + F
Sbjct: 125 DTAYRQFLEERKNSININLQAGEFGQKLGDWLVYVQKSKEDSSYENIVLLSFAKEGGMIF 184
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ + + + + + + + +D + R
Sbjct: 185 SDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILFDTLIIRSSITAIDEVDLGVIGYWKR 244
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+FYE ++ +++ + + ++ R + I
Sbjct: 245 AFYENDRQKKTLRNLSMYVMMSC------------FPLVSLFFFPLLGVKNPRYQKNYTI 292
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ G + P+ I I+ + L L+ +
Sbjct: 293 LQAMGVIGIFYALMYLFASYL-------PLLGMFIFPIIWLLLGYLLFER 335
>gi|167621692|ref|YP_001672200.1| hypothetical protein Caul_5426 [Caulobacter sp. K31]
gi|167351815|gb|ABZ74541.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 230
Score = 38.5 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+AA +P + +P + +V L+ +SE+ A G S+ +++ PFVV +LLG
Sbjct: 1 MAANLLPHYLGLALPVAFFIALFIVITTLSDSSEIDALLAGGRSLTRIVAPFVVIGVLLG 60
Query: 114 IFTVLVINPIATSGEKIGIDLIQ 136
+F+V+V + ++
Sbjct: 61 LFSVIVFGYLQPYSRYAFRSVMH 83
>gi|290770131|gb|ADD61891.1| putative protein [uncultured organism]
Length = 1068
Score = 38.1 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 10/256 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN----QMGELPNYSISRGAVLAATRV 59
IL R K +L L LV + L+E + +++ ++A V
Sbjct: 412 ILHRRNLKAFLSVLAATLTTMGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLMVALFFV 471
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I++I + + R +++ + ++ F V +
Sbjct: 472 PSMIEKI------GLVRRITGKKRRLVLPGLTQTFKTRLGRIFRRFPVYFSCCYSALIRF 525
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + + + W N + + P
Sbjct: 526 LCRWRWAVCLLLLLGFGLPVFLLPGKLEGGGKWEAAYNKVFGSDTYKESVKPVVDKALGG 585
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +K + ++ L + + + T L+ ++ F
Sbjct: 586 SLRLFIQKVYEGSYFTRNEEVVLYANANLPNGSTLEQMNTLMKRMETYLSRFKEIRQFHT 645
Query: 240 FSEQFASRSFYEIIKK 255
S KK
Sbjct: 646 SIYSPRRASMQIYFKK 661
>gi|270294413|ref|ZP_06200615.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275880|gb|EFA21740.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 1068
Score = 38.1 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 10/256 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN----QMGELPNYSISRGAVLAATRV 59
IL R K +L L LV + L+E + +++ ++A V
Sbjct: 412 ILHRRNLKAFLSVLAATLTTMGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLMVALFFV 471
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I++I + + R +++ + ++ F V +
Sbjct: 472 PSMIEKI------GLVRRITGKKRRLVLPGLTQTFKTRLGRIFRRFPVYFSCCYSALIRF 525
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + + + W N + + P
Sbjct: 526 LCRWRWAVCLLLLLGFGLPVFLLPDKLEGGGKWEAAYNKVFGSDTYKESVKPVVDKALGG 585
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +K + ++ L + + + T L+ ++ F
Sbjct: 586 SLRLFIQKVYEGSYFTRNEEVVLYANANLPNGSTLEQMNTLMKRMETYLSRFKEIRQFHT 645
Query: 240 FSEQFASRSFYEIIKK 255
S KK
Sbjct: 646 SIYSPRRASMQIYFKK 661
>gi|326381958|ref|ZP_08203651.1| putative integral membrane c-type cytochrome biogenesis protein
DipZ [Gordonia neofelifaecis NRRL B-59395]
gi|326199384|gb|EGD56565.1| putative integral membrane c-type cytochrome biogenesis protein
DipZ [Gordonia neofelifaecis NRRL B-59395]
Length = 563
Score = 38.1 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
V+P++ V +S R + + GI F L T++ + G L
Sbjct: 20 CVLPMIPVIFITGGSSADEGRVRPGYGRALAIIVGIVVSFSLITLLGTL-VLAALG-LPS 77
Query: 337 VAAALIPVILTISLSILILL 356
++L + + + +L+
Sbjct: 78 GLLRWTGIVLLVLIGLGMLI 97
>gi|149369519|ref|ZP_01889371.1| peptidase M28 [unidentified eubacterium SCB49]
gi|149356946|gb|EDM45501.1| peptidase M28 [unidentified eubacterium SCB49]
Length = 786
Score = 38.1 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ L++ ++ + + + + VA + + + +I + G A
Sbjct: 403 HWYIAFFVLLSVAICFKVYKRYKVKNNVADFYVAPLVFWFVINTAVAIVLRGA-----AY 457
Query: 341 LIPVILTISLSILILLQKE 359
I + S +LL++E
Sbjct: 458 WIIPVFFGLFSFFMLLRQE 476
>gi|90418583|ref|ZP_01226495.1| putative two-component sensor histidine kinase [Aurantimonas
manganoxydans SI85-9A1]
gi|90338255|gb|EAS51906.1| putative two-component sensor histidine kinase [Aurantimonas
manganoxydans SI85-9A1]
Length = 548
Score = 38.1 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 276 FLIVIPLMLVAMTLI----AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
++ P+ +VA L+ V L R +L+T+ G +
Sbjct: 140 RRLLFPMAVVAYALLKNRPVGPVGLRGMRRR------IATCVVAVLLWTLTVAFYVLGTA 193
Query: 332 GILLPVAAA-------LI--PVILTIS--LSILILLQ 357
G L P +A + P I + I +L++
Sbjct: 194 GWLPPFLSAGGTLTIVWMLVPAIALLLYAAGIALLVR 230
>gi|146165911|ref|XP_001015862.2| hypothetical protein TTHERM_00266270 [Tetrahymena thermophila]
gi|146145304|gb|EAR95617.2| hypothetical protein TTHERM_00266270 [Tetrahymena thermophila SB210]
Length = 3487
Score = 38.1 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 37/335 (11%), Positives = 93/335 (27%), Gaps = 13/335 (3%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L T + LV + + + + + I+ L PLI +
Sbjct: 2784 LLFTFVQCAFLLALVIIFYASFLLVNIIKKER--INYLISLYLLPSPLISSCLFLMYFFQ 2841
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ T + V ++ S + + I I +
Sbjct: 2842 QTLTSTSLQVITCQTVGNQYYMQSQMSKQCYTDEYFRWFPLLILTFIFSTFIYPLIIFLV 2901
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
L + + + + + Q + G+K + + TS+ N +
Sbjct: 2902 LYRNREKIYNLSRLVKVQNSVQIQKDQSLRDGSKMCSQDVQKVDFNTSVRSQNPNNNSNN 2961
Query: 194 KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
++ + Y +YG + + I ++ S ++I+
Sbjct: 2962 QNNRIIDKYQRFKTFYYKTYRRYGFLYFEFKPQYWWWEIMKMTMRQVIIILTQLSLFQIL 3021
Query: 254 KKMS--------FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+K+S +S YR + ++ + + + ++ +N
Sbjct: 3022 EKVSLIILILFLYSLLQLRIQPYRNKKLNQIDHMLNALSIIIIILGL---YSQGITNDIH 3078
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ I G + + I+ +S + +
Sbjct: 3079 KQILSIIIIGLKFFVLGFIILRLLESFTAQQIFSI 3113
>gi|253827767|ref|ZP_04870652.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511173|gb|EES89832.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 314
Score = 37.8 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 32/312 (10%), Positives = 90/312 (28%), Gaps = 19/312 (6%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
S L +PL+I +IP V + L+ EL + A+G++ +++ F
Sbjct: 16 ISFFELLSLYFYTLPLMIFFVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIF 75
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ L+ ++ + + +++ K++ + ++ + +
Sbjct: 76 FPIAALVSFSLFILSLVLTPLSDTAYRQFLEERKNSININLQAGEFGQKLGDWLVYVQKS 135
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ EN + F + + + + + + +
Sbjct: 136 KEDSSYENIVLLSFAKEGGMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILFDTL 195
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ +D + R+FYE ++ +++ +
Sbjct: 196 IIRSSITAIDEVDLGVIGYWKRAFYENDRQKKTLRNLSMYVMMSC------------FPL 243
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ ++ R + I+ G + P+ I I
Sbjct: 244 VSLFFFPLLGVKNPRYQKNYTILQAMGVIGIFYALMYLFASYL-------PLLGMFIFPI 296
Query: 346 LTISLSILILLQ 357
+ + L L+ +
Sbjct: 297 IWLLLGYLLFER 308
>gi|58258975|ref|XP_566900.1| nicotinamide mononucleotide permease [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107105|ref|XP_777865.1| hypothetical protein CNBA5620 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260563|gb|EAL23218.1| hypothetical protein CNBA5620 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223037|gb|AAW41081.1| nicotinamide mononucleotide permease, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 498
Score = 37.8 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 23/312 (7%), Positives = 76/312 (24%), Gaps = 17/312 (5%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+ +P + + ++ + + A + QL
Sbjct: 99 LVFFISYVLFEIPSNLF----IARVRPSLYLSGLCILWGGIAACMAATKNYSQLAGVRFA 154
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
++ F V +++ ++ + + +
Sbjct: 155 LGVVEAGFAPGVAFYLSSWYKRYELASRYSLYYTATAISGAFSGLLAGVITENLDGARGL 214
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ I E S + I + ++ + + +
Sbjct: 215 RGWQWLFIIEGCGSSFLGFFTWFIMPDWPSTTRFLSPDERVLAAQRLAHDGLGNTAGAQG 274
Query: 228 LNIPIK-MDGFQKFSEQFASRSFYEII---KKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + + Y + + + + + I + +
Sbjct: 275 HVGHWDALKMAVVDWRTWMFTALYMLCTGAQTIQYFVPTLIGALGWTGYLGQYRTIPLYA 334
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI---------ITIMKSFGKSGIL 334
+ ++ ++ R+ I +A + + F + + ++ +FG L
Sbjct: 335 CAFLFILVFCWGADYFRAKPLFITIAASMGTVFFIVVTCVTQHMVQYVFLILAFGCVYAL 394
Query: 335 LPVAAALIPVIL 346
P+ +P IL
Sbjct: 395 PPLILTWVPNIL 406
>gi|315452594|ref|YP_004072864.1| Integral membrane protein [Helicobacter felis ATCC 49179]
gi|315131646|emb|CBY82274.1| Integral membrane protein [Helicobacter felis ATCC 49179]
Length = 348
Score = 37.8 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 28/300 (9%), Positives = 86/300 (28%), Gaps = 13/300 (4%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
S L +P + IIP ++ L+ EL++ ++GI+ Q++ F
Sbjct: 44 LSALDLLQLYFYLLPGTLFFIIPITFFGACVIGLARLSYDHELLVFFSLGIAPRQIVRAF 103
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ +++ ++ + + + ++ K+ D ++ + +
Sbjct: 104 LPLCLVVSALLLVFSLILVPASKSAYYSFLRDKKERVDVNIQAGEFGQKLGDWLVYVGKS 163
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ + ++ T R + + + +
Sbjct: 164 QNGVFGDLVLFSHSGLSTESFIIAKEGRIRNQNGLFELELDHGNAYFAAKGQVRKVHFKE 223
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
L + + + + + + K+ H + + + ++ +
Sbjct: 224 LILKNKPALSERKDAAYLYG-------HDFIGYWGKAFGAHPNAHQQRRFTQAILVALFP 276
Query: 286 AMTLIAAS-VSLEFSRSNQP--RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+L + R + + V F+L + I + F G + +
Sbjct: 277 LASLFCIPLFGIANPRYAKNLSYVYVLITTGIYFLL--MHIISQDFPLVGTISLPI-VWM 333
>gi|160891115|ref|ZP_02072118.1| hypothetical protein BACUNI_03562 [Bacteroides uniformis ATCC 8492]
gi|156859336|gb|EDO52767.1| hypothetical protein BACUNI_03562 [Bacteroides uniformis ATCC 8492]
Length = 1068
Score = 37.8 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 10/256 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN----QMGELPNYSISRGAVLAATRV 59
IL R K +L L LV + L+E + +++ ++A V
Sbjct: 412 ILHRRNLKAFLSVLAATLTTMGALVIIFFLDERIRLNLQDFAAVVIINLAVSLMVALFFV 471
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I++I + + R +++ + ++ F V +
Sbjct: 472 PSMIEKI------GLVRRITGKKRRLVLPGLTQTFKTRLGRIFRRFPVYFSCCYSALIRF 525
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + + + W N + + P
Sbjct: 526 LCRWRWAVCLLLLLGFGLPVFLLPDKLEGGGKWEAAYNKVFGSDTYKESVKPVVDKALGG 585
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +K + ++ L + + + T L+ ++ F
Sbjct: 586 SLRLFIQKVYEGSYFTRNEEVVLYANANLPNGSTLEQMNTLMKRMETYLSRFKEIRQFHT 645
Query: 240 FSEQFASRSFYEIIKK 255
S KK
Sbjct: 646 SIYSPRRASMQIYFKK 661
>gi|321258526|ref|XP_003193984.1| alpha-1,2-mannosyltransferase; Alg11p [Cryptococcus gattii WM276]
gi|317460454|gb|ADV22197.1| Alpha-1,2-mannosyltransferase, putative; Alg11p [Cryptococcus
gattii WM276]
Length = 902
Score = 37.8 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 30/351 (8%), Positives = 82/351 (23%), Gaps = 16/351 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQN---QMGELPNYSISRGAVLAATRVPLIIQQ 65
Y+L L F L LV I L+++ N + +
Sbjct: 12 LLSYFLLIFLSFGLVFRSLVAGIQLDKLFNGRPFFFLRSSIGALLCTWYFMIQFMNWSYH 71
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+I + E S + + I I +
Sbjct: 72 DFAAYNPSSSIGEWLVNTALFEQAWSIVCKGPGNWWWSSW----ICTWTVAFTAIVWFES 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
I ++ + + I + + I
Sbjct: 128 GRRGIRYPYAYMLLGQLVAMSVATGLFLVAISLYPRTHSSPRTIPFYIAVPLVMAFVPIH 187
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ +++ + + ++ F S
Sbjct: 188 FLPHDMGTDRFIKMLLWLHGALFLVLTSPSASSEEDVASHKGVSPSFLHTVFVTLSSIIH 247
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + + + + + ++ ++++ + L ++
Sbjct: 248 IPATLRLFASIPTGQSLTSYLFTTLFSHPAQASISLDVIWVFLILSSWLILSGPFRSRFF 307
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ GF L + ++G + A+++P++L +S+ L
Sbjct: 308 KSALF--LFGFALVLVNYTGINWG-------LVASIVPMLLLLSVGACALY 349
>gi|223982618|ref|ZP_03632852.1| hypothetical protein HOLDEFILI_00126 [Holdemania filiformis DSM
12042]
gi|223965398|gb|EEF69676.1| hypothetical protein HOLDEFILI_00126 [Holdemania filiformis DSM
12042]
Length = 692
Score = 37.8 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 6/161 (3%)
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS- 262
D + L ++ + + L+ F E S + + ++ S
Sbjct: 93 DAMWLGDFLQTMPSEMIPEDLRGMLDNGDCQLMMVTFEEGNGSDRTLKAVDEIKSLMNSQ 152
Query: 263 ---NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+T+ +PL + ++ V R + I GI +
Sbjct: 153 MFLGGLAAVINDTKMLIEQELPLYVAVAVGLSLVVLFLGLRYSVAPFIFLLGILYAVLYN 212
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I G+ + AA++ + +++ SI +L + ++
Sbjct: 213 FGTNIF--LGEVSYITSALAAILQLAVSMDFSIFLLERYDE 251
>gi|163841746|ref|YP_001626151.1| glycosyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162955222|gb|ABY24737.1| glycosyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 1134
Score = 37.4 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 273 QFYFLIVIPLMLVAMTLIAASVSL--------EFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ IP +A+ +I A + L RS R++ GIF+ + Y + I
Sbjct: 664 MSWLPAGIPWAWLAVLIIGAPLVLLAVGALVWPNKRSATVRVLWLVGIFALVLGYLVGHI 723
Query: 325 MKSFGKSGILLPVAAALIPVILTISLS 351
S GK ++ P + + V+ L
Sbjct: 724 GTSTGKDALVTPFSGPALSVLAFALLG 750
>gi|320200608|gb|EFW75194.1| hypothetical protein ECoL_02174 [Escherichia coli EC4100B]
Length = 56
Score = 37.4 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 1 MGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 55
>gi|257052666|ref|YP_003130499.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
utahensis DSM 12940]
gi|256691429|gb|ACV11766.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
utahensis DSM 12940]
Length = 666
Score = 37.4 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG-------KSGIL 334
VAM L+ A+V + + + G F++ TI ++ G G
Sbjct: 155 FYYVAMGLLGANVLFGSGKRRRQSAALFVGFLPAFVITTIWSMGVLLGPINGALVIGGTW 214
Query: 335 LPVAAALI 342
A
Sbjct: 215 SLAVIAWA 222
>gi|242065148|ref|XP_002453863.1| hypothetical protein SORBIDRAFT_04g019800 [Sorghum bicolor]
gi|241933694|gb|EES06839.1| hypothetical protein SORBIDRAFT_04g019800 [Sorghum bicolor]
Length = 798
Score = 37.4 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P L AM ++ + + R+ +
Sbjct: 647 SLWRQFKAETEYTVTQAIAAQEANKRNNNWLPPPWALAAMAILGFNEFMTLLRNPLYLAV 706
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G ++ + I F ++G L + + +P I+ I
Sbjct: 707 IFVIFLVGKAIWVQLDIASEF-QNGFLPAILSLSTKFVPTIMNIL 750
>gi|239948137|ref|ZP_04699890.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
gi|239922413|gb|EER22437.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
Length = 233
Score = 37.4 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 21/193 (10%), Positives = 66/193 (34%), Gaps = 3/193 (1%)
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
++ ++ D S+ + ++ + + + V + +S
Sbjct: 42 MNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYDV---NGNLTQLTFDS 98
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ + + ++ + Y I + ++ + I + + + I+ PL
Sbjct: 99 LMIKLQNDNPLVSQRTKHNKEANEYYISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNF 158
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ +A +V L + S + + +L T I + S L + A ++
Sbjct: 159 VLPFLALAVFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKNLDFIFACYSNLV 218
Query: 346 LTISLSILILLQK 358
+ + + + + ++K
Sbjct: 219 IALMIGLYLFVRK 231
>gi|163785437|ref|ZP_02180046.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879293|gb|EDP73188.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
Length = 313
Score = 37.4 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 37/331 (11%), Positives = 95/331 (28%), Gaps = 18/331 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ ++Y K + L FL +L+ + + + + + I +
Sbjct: 1 MKLFYKYLAKKFFYYFLTFLGIISLLIISSQMLNLPSIL---YHLDIFKFFQSILLINIS 57
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ F + + + + L E+ + GIS L + +I+ + + +
Sbjct: 58 FLKLQFLFAYALSFLFLGYYLRENREIYAIYSAGISKNNFLKFIIGLNIIAVVVGLFISL 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + I I + + + K +N + + +
Sbjct: 118 YVVPKANRERIKFITVNVKKYFLEALQPKNFTTLPGDYIVYVSDKDKEKMKNVVIYNQKN 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K + + ++P L +
Sbjct: 178 GFLITAKKAFFKGTNLILYEG-------------MLQVPSKHGFNALIYKRYIFDLNIEY 224
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E+ S + + ++ + SN +A I L + + + + L S+
Sbjct: 225 EKKYSIEDFRLKDLLTIAVSSNNSEKLKAIAVLSERIAYVLPFLFIPTMFFFIGLNISKD 284
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ VA GI + +I + + G
Sbjct: 285 RDFILSVALGIL--VIYISINYYLIKLIEKG 313
>gi|116192583|ref|XP_001222104.1| hypothetical protein CHGG_06009 [Chaetomium globosum CBS 148.51]
gi|88181922|gb|EAQ89390.1| hypothetical protein CHGG_06009 [Chaetomium globosum CBS 148.51]
Length = 1873
Score = 37.4 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 21/236 (8%), Positives = 58/236 (24%), Gaps = 21/236 (8%)
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
+ I S K E + E+ + I +
Sbjct: 1598 DELLPWMRYIFVQTPSYTHIMPLHHQKSHAREIKVSENPGLHLVWYYELIFIKPIPAYFY 1657
Query: 201 IYNDKVKLKKVV------EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE-II 253
V L+ + R ++ + ++ YE
Sbjct: 1658 SQAFWVYLENANKELYGACLGFIRSYYMLIQYEIDFHEACELRLIPAKGNGELPTYEEWC 1717
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + + H R + + + + + + I
Sbjct: 1718 EFIEPFARVGDAHVNRRYHYGELRLTRINRAAMLFKFSLAYFHIYPQWGSFLEHTLAPII 1777
Query: 314 SGFML--YTIITI----------MKSFGKSGILLPVA--AALIPVILTISLSILIL 355
+ F + + ++ + F +G + PVI+ +S++++++
Sbjct: 1778 TVFAVCSVVLNSMQVSLAVMEVKGEDFAITGAWNSFMDASLWFPVIVNLSIAVILI 1833
>gi|332367302|gb|EGJ45037.1| hypothetical protein HMPREF9396_0181 [Streptococcus sanguinis
SK1059]
Length = 689
Score = 37.0 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 5/247 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K Y+K+ L+ L +L ++ E N S T+ +
Sbjct: 3 IIMKYLMKKYVKSFLFGLTFIFVLFSS--AVYAVTELTESTNLSTLDIYQFTLTQ--DNM 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ + + + S + R Q N + +
Sbjct: 59 EVLSQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I L+Q+ D D K + N I P + +
Sbjct: 119 YVTFHSIDTHLVQRNADYQDPNKMLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGS 178
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + V L ++ Y + ++N + + I ++ K +
Sbjct: 179 FALDTDVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTS 238
Query: 243 QFASRSF 249
+ +
Sbjct: 239 YALNETL 245
>gi|322489317|emb|CBZ24576.1| putative ATP-binding cassette protein subfamily A, member 4
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 2062
Score = 37.0 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 12/158 (7%)
Query: 4 ILWR--YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS-ISRGAVLAATRVP 60
IL R Y K + L + +I L+ + S I + A P
Sbjct: 518 ILLRAAYLAKSNFGIVFFLLFVFSL--SIITLSGLMAVFFNRARLSAILAPLIYFALAAP 575
Query: 61 LIIQQ------IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
L Q +I L + + S +S + S ++ I
Sbjct: 576 LFTVQNLQGPALIGLSFLSPSGLAVGVTILFS-HELSGGMAGSDLTYFRDSPKMLTVMII 634
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
V + +A + Q + + W
Sbjct: 635 LFVDFLIYLALMLYLDAVMPKQWGTRKHPLFFIEPVRW 672
>gi|150864187|ref|XP_001382911.2| hypothetical protein PICST_66867 [Scheffersomyces stipitis CBS
6054]
gi|149385443|gb|ABN64882.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 463
Score = 37.0 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 1/112 (0%)
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+D S+++ S ++I R + P + + L+
Sbjct: 209 IDDLLWESKRYPSSQPWKIYGSSKLLLGMFAKEYQRRLMAYERNDKAPC-NIRINLVNPG 267
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ S + G+ ++Y I + +SG A P+
Sbjct: 268 IMRTASTRRFLSMGTVLGLLLYLIMYPIWYLFLKSARSGAQNVFFALFAPIF 319
>gi|118372357|ref|XP_001019375.1| hypothetical protein TTHERM_00389700 [Tetrahymena thermophila]
gi|89301142|gb|EAR99130.1| hypothetical protein TTHERM_00389700 [Tetrahymena thermophila SB210]
Length = 1778
Score = 37.0 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 32/296 (10%), Positives = 82/296 (27%), Gaps = 16/296 (5%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLN-----EIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+ + L +L + I L + + +Y +L +PL + +
Sbjct: 1167 NFTGSFLSNMLIFFCIQGFIWLFCYCLNKYIIKYELDHHYFTYHLNMLITYNLPLALFLL 1226
Query: 67 IPFITLVVNIVVFFNLNRTS----------ELVISRAIGISIWQLLNPFVVGSILLGIFT 116
F ++ + + +S E+ +S + F
Sbjct: 1227 SYFEIIISIFLQLKQGDYSSLFNTSLLGLLEVEQYSLEKLSPNYHNLENNNSCYISFYFA 1286
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
VL I S + L Q+ ++ ++ + + + I K I
Sbjct: 1287 VLQIENAIFSWKYSMNFLYVQYGLFQFQKHTNFLFILFEFVVNIPLLIQRYKWARNILIE 1346
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + + I R++ L ++ DK + + D+++ +
Sbjct: 1347 QTSHFLEWLNRKNIQKRQNFLLNMLSIDKKDEHVINMSENKTNQSDQSNYYFKNQKDIIH 1406
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + + N + + L+ M L+
Sbjct: 1407 LLTGHDLKQVKQSNQELDIID-LEIDEEEVNLIKQRSKLSSNNLNLLPQDMNLVGL 1461
>gi|329767544|ref|ZP_08259067.1| hypothetical protein HMPREF0428_00764 [Gemella haemolysans M341]
gi|328835878|gb|EGF85600.1| hypothetical protein HMPREF0428_00764 [Gemella haemolysans M341]
Length = 727
Score = 37.0 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 4/51 (7%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA 52
L++Y L +V ++ + ++ ++
Sbjct: 1 MKTLFKYIS----SIFFSICLVLFFVVMIL-FARELRDVPDITQANLQDPL 46
>gi|325687336|gb|EGD29358.1| hypothetical protein HMPREF9381_1485 [Streptococcus sanguinis SK72]
Length = 689
Score = 37.0 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 72/247 (29%), Gaps = 5/247 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K Y+K+ L+ L +L ++ E N S T+ +
Sbjct: 3 IIMKYLMKKYVKSFLFGLTFIFVLFSS--AVYAVTELTESTNLSTLDIYQFTLTQ--DNM 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ + + + S + R Q N + +
Sbjct: 59 EVLSQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I L+Q+ D D K+ + N I P + +
Sbjct: 119 YVTFHSIDTYLVQRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGS 178
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + V L ++ Y + ++N + + I ++ K +
Sbjct: 179 FALDTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTS 238
Query: 243 QFASRSF 249
+ +
Sbjct: 239 YALNETL 245
>gi|189520009|ref|XP_696586.3| PREDICTED: solute carrier family 44, member 2 [Danio rerio]
Length = 845
Score = 37.0 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 34/357 (9%), Positives = 85/357 (23%), Gaps = 17/357 (4%)
Query: 8 YF-FKYYLKTTLYFLLGAMILVFVIDLN---EIQNQMGELPNYSISRGAVLAATRVPLII 63
Y + + L ++ ++ + + + + S + G V+++ PL+
Sbjct: 308 YLQIQQTWLAFMIILCIVEAVILLLLIFLRKRLLIAIALIKEASKAIGHVMSSLFYPLLT 367
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + I F + + T V
Sbjct: 368 YALMSLVIAYWAITAVFLSTSNEPIYKVFNTSNCSYSRATCN-----PATFNTSNVTTEC 422
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ I +G + +
Sbjct: 423 PDAECLFAFYGGETLYHKWLIVFQFYNLFLFFWCVNFVIALGQVTLAGAFASYYWAFKKP 482
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D I + + ++ I + + + F KF
Sbjct: 483 DDMPAFPIFNSLGRALRYHTGTLAFGSLILAIVQVIRVVLEYLDQKLKGAQNKFAKFLLS 542
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
F+ + K + F N++ Y A L+ ++
Sbjct: 543 CLKCCFWCLEKFIKFINRNAYIMVAI-----YGKNFCTSARDAFFLLMRNIVRVAVLDKV 597
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGK---SGILLPVAAALIPVILTISLSILILLQ 357
++ G + I + GK + + P ILT+ ++
Sbjct: 598 TDFLLFLGKLLIVGIVGICSFFFFTGKIKIAQDVTPALNYYWVPILTVVFGAYLIAH 654
>gi|156101579|ref|XP_001616483.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax SaI-1]
gi|148805357|gb|EDL46756.1| tryptophan-rich antigen (Pv-fam-a) [Plasmodium vivax]
Length = 588
Score = 37.0 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 26/292 (8%), Positives = 71/292 (24%), Gaps = 33/292 (11%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
K +L L L A+ + + + + E S+ T + P
Sbjct: 293 KGFLGFFLSLLSIALFTIMCANFLKQLSVSIERQQESVYAKQDPFLTNKGENFYEPTPDS 352
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIW----------QLLNPFVVGSILLGIFTVLVI 120
T + +E + + S W + V+
Sbjct: 353 T---------ERWKENEWYMWKKKLNSSWEEFNSSVENGKRKWLVNKDKDWEDWLKVMEK 403
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ------------ISNPQQDIFIGAKK 168
+ + ++ + D W++ + +
Sbjct: 404 KWMHYNERMEREYKSDLFERSADWDDQQWEEWIRTEGEQFMELDWKKWMYENKFLLDDWA 463
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNST 226
+D + K+ +K D + V L+ + + I++
Sbjct: 464 SKEWAKWKKDKIMSWLLSDWKLTEQKYWDDWENKAWPRFVYLRDRENWMRWKERINREWE 523
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
++ + ++ S + ++ F + F + + +
Sbjct: 524 EWTSWVQDKDKVFVNNKWVGWSKWRDDRRALFDDWMKPFIEKWINQKQWKVW 575
>gi|125718440|ref|YP_001035573.1| hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
gi|125498357|gb|ABN45023.1| Hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
Length = 689
Score = 37.0 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 72/247 (29%), Gaps = 5/247 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K Y+K+ L+ L +L ++ E N S T+ +
Sbjct: 3 IIMKYLMKKYVKSFLFGLTFIFVLFSS--AVYAVTELTESTNLSTLDIYQFTLTQ--DNM 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ + + + S + R Q N + +
Sbjct: 59 EVLSQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I L+Q+ D D K+ + N I P + +
Sbjct: 119 YVTFHSIDTYLVQRNTDYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGS 178
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + V L ++ Y + ++N + + I ++ K +
Sbjct: 179 FALDTNVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYDKDIALNKIVKNTS 238
Query: 243 QFASRSF 249
+ +
Sbjct: 239 YALNETL 245
>gi|224134563|ref|XP_002327435.1| predicted protein [Populus trichocarpa]
gi|222835989|gb|EEE74410.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 37.0 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P ++A+ ++ + + R+ +
Sbjct: 556 SLWRQFKTETEYTVTQAISAQEAHKRNNNWLPPPWAILALVVLGFNEFMTLLRNPLYLGV 615
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G L+ + I F ++G L + + +P I+ +
Sbjct: 616 IFVGFLLIKALWVQLDISGEF-RNGALPGLLSLSSKFVPTIMNLL 659
>gi|324991425|gb|EGC23358.1| hypothetical protein HMPREF9388_0267 [Streptococcus sanguinis
SK353]
Length = 689
Score = 37.0 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 72/247 (29%), Gaps = 5/247 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K Y+K+ L+ L +L ++ E N S + T+ +
Sbjct: 3 IIMKYLMKKYVKSFLFGLTFIFVLFSS--AVYAVTELTESTNLSTLDIYQFSLTQ--DNM 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ + + + S + R Q N + +
Sbjct: 59 EVLSQGASVERDFIPANGNWKESTVFSLRVDKNQTQQTFNSPIQLRFNNAGIVNGKAVDV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ I L+Q+ D D K+ + N I P + +
Sbjct: 119 YVTFHSIDTHLVQRNADYQDPNKTLVPFLTVDENWGSKSIQIMDYIWPPHPTLTHDMHGS 178
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + V L ++ Y + ++N + N ++ K +
Sbjct: 179 FALDTDVTAELRYQDGTPTDLKMVMLPSDIDVVYNALGREENFSIYNKDTALNKIVKNTS 238
Query: 243 QFASRSF 249
+ +
Sbjct: 239 YALNETL 245
>gi|329770142|ref|ZP_08261534.1| hypothetical protein HMPREF0433_01298 [Gemella sanguinis M325]
gi|328837158|gb|EGF86798.1| hypothetical protein HMPREF0433_01298 [Gemella sanguinis M325]
Length = 447
Score = 36.6 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + ++A + F+R + A+GI +++ ++ I
Sbjct: 95 IFYIILFILAIPTTASFARRLRDVGFAAWGIVLAVVIFYLLNIFSI 140
>gi|323481015|gb|ADX80454.1| permease family protein [Enterococcus faecalis 62]
Length = 389
Score = 36.6 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 7/129 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS-------ISRGAVLAATRV 59
+Y K + + + + L+ ++ L E ++G + + L +
Sbjct: 248 KYIIKVMTYSIMLVGMVVLSLILILWLRERIYEIGIFLSIGTSKIQIIMQFIFELIFISI 307
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I + L+ IV F + S + I S + + S L+ I +++
Sbjct: 308 PSVISSLFLGNVLLKVIVDGFINSEDSMISGGSLINNSSFMSNITTLGQSYLILISIIVL 367
Query: 120 INPIATSGE 128
A+S
Sbjct: 368 SVVFASSLM 376
>gi|85858076|ref|YP_460278.1| HD domain-containing protein [Syntrophus aciditrophicus SB]
gi|85721167|gb|ABC76110.1| HD domain protein [Syntrophus aciditrophicus SB]
Length = 660
Score = 36.6 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 31/321 (9%), Positives = 84/321 (26%), Gaps = 17/321 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L YF Y+ ++ LL + +V + ++ +
Sbjct: 1 MMDRLKNYFMTYFEQSF--VLLVLISIVLIFYFL--------PNKLAMLNFFYIPILGAA 50
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + + + + + + L V+ L + V+V
Sbjct: 51 YYINHRGAMLGSIFCVFTVILFAWL--YPSNFFVEQTPMNLGLHIVIWGGFLILTGVIVG 108
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+I + + + K+ + + + + ++ E
Sbjct: 109 TLRQNLLNEISQGVTLKTELKVSKKNLEKVSRDLQEHTEHMEDKIKERTHHLEKSKEAVE 168
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ + D + + +K + + +T +
Sbjct: 169 EMKERVEDALYSTMDPAVVKLLIEKRLRTEKRNISVLFSDLKSFTTFSEASQPEIVVTQL 228
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ FA + K ++ M ++AA + R
Sbjct: 229 NRLFAEMETILLEYKAHIDKYMGDGIMAEFGAPTHYDR-----HALMAVMAAMKMQNWVR 283
Query: 301 SNQPRIIVAYGIFSGFMLYTI 321
S+ + + GI +G + +
Sbjct: 284 SSDFPLKMRIGIATGEAIVGL 304
>gi|320536713|ref|ZP_08036722.1| magnesium-translocating P-type ATPase [Treponema phagedenis F0421]
gi|320146416|gb|EFW38023.1| magnesium-translocating P-type ATPase [Treponema phagedenis F0421]
Length = 877
Score = 36.2 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
L + K +L L+ ++ F+ + +GE S L
Sbjct: 53 LLKLIIKSFLTPFTLVLIVLSVISFITEYV--LAPVGEKDALSALIILFLVILS 104
>gi|308509510|ref|XP_003116938.1| hypothetical protein CRE_32636 [Caenorhabditis remanei]
gi|308241852|gb|EFO85804.1| hypothetical protein CRE_32636 [Caenorhabditis remanei]
Length = 413
Score = 36.2 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 8/230 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAM---ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
R K YLKT L L + I+ + + + + P +
Sbjct: 11 DRNILKRYLKTALIVLSILVICGIVALGLSNVTLLKTLPSAASCGKRIVGYYTEWEAPEV 70
Query: 63 ----IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW-QLLNPFVVGSILLGIFTV 117
++++ I L I + E SR + + + LN + I +G + V
Sbjct: 71 TENQLRKLTHVIFLFAAIYEDGSARFWDEHGESRFLTLKEMAKKLNTGLKVMIGVGGYMV 130
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
S K+ LI D+ D + I Q K I
Sbjct: 131 SPRFGPIVSDSKLRKKLISDIASIIDEHDLDGVEIFWIFPGQTHKKYYLKLIRELREKLS 190
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
I + I+ + + LK+++EY + +
Sbjct: 191 QMEQIKNRAEAYILSIVAPKFKVQLKNGYDLKRLLEYADFIDVLTYDYFN 240
>gi|123493710|ref|XP_001326354.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121909267|gb|EAY14131.1| hypothetical protein TVAG_351790 [Trichomonas vaginalis G3]
Length = 991
Score = 36.2 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 15/245 (6%)
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
K +I + + W + I I + I S T K
Sbjct: 731 WSKFVQPMIPKRITPKPDPIAYNKTWKSEKINETQYKINLNDIPSHDQIVYIGNSDTFSK 790
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---------LNIPIKMDGF 237
+ KL E D+++ + ++
Sbjct: 791 VRIFFSAVKLTKCPKGYNCNKLTNATEAHSWLCFSDESNENVCFEAGDARYGLEYAINDP 850
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL-----IAA 292
S+ F + ++ + E ++ + + + L +
Sbjct: 851 SDASKGFHVEYDGGLGNYETWLHFWCNTSVPAGEMYWHPVSKMFGSSYKIILETESRLGC 910
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PVAAALIPVILTISLS 351
+ +F + + +F G LY + + +F G + P AA ++ +
Sbjct: 911 PIGTKFPGTTTGGAVFLLIVFLGVFLYVFVMVAYNFFAKGEVAFPNAAFWAEFFNCVTAA 970
Query: 352 ILILL 356
+ +
Sbjct: 971 CVFIF 975
>gi|298206906|ref|YP_003715085.1| RND family efflux transporter [Croceibacter atlanticus HTCC2559]
gi|83849540|gb|EAP87408.1| RND family efflux transporter [Croceibacter atlanticus HTCC2559]
Length = 1071
Score = 36.2 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 12/152 (7%)
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ + N + I ++ + + ++ E + F
Sbjct: 280 KVRAYTEEFNEKYTALQIIIEDDRSITLNQRTQLLIENGAVGILLVLFFLSLFLNTRLAF 339
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF------ 328
+ +P+ + M + A S + + + +I+ GI + I + +
Sbjct: 340 WVAFGLPIAFLGMFMFAGSFGVTINVLSLFGMIIVIGILVDDGIVISENIYQHYEMGKKP 399
Query: 329 ------GKSGILLPVAAALIPVILTISLSILI 354
G +L P+ +A+I IL S + +
Sbjct: 400 VQAAIDGTLEVLPPILSAIITTILAFSTFLFL 431
>gi|297526499|ref|YP_003668523.1| hypothetical protein Shell_0493 [Staphylothermus hellenicus DSM
12710]
gi|297255415|gb|ADI31624.1| hypothetical protein Shell_0493 [Staphylothermus hellenicus DSM
12710]
Length = 705
Score = 36.2 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I G +L + G G++ +AA LI +++ + I+L
Sbjct: 56 LTSIIVGIILLVFSIFLLILGGVGVID-LAAGLIGIVVLACIGAFIILY 103
>gi|118346014|ref|XP_976836.1| hypothetical protein TTHERM_00702230 [Tetrahymena thermophila]
gi|89288253|gb|EAR86241.1| hypothetical protein TTHERM_00702230 [Tetrahymena thermophila SB210]
Length = 1472
Score = 36.2 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 31/344 (9%), Positives = 90/344 (26%), Gaps = 5/344 (1%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
++ + + + +I + + A ++ I + ++ +
Sbjct: 830 IFAICLFFGFLIAFRIIQILLKKILAKCEKFNSFMYKCAMKLQYNISIEVVYVVFLNFCA 889
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F + + + S + + L KI ++
Sbjct: 890 SSFLQFQDTTVSDSTEKEHTAELVNIIVFSICFLGLFAVPTSQLIFLYRNRKIIEFDLEN 949
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
++ + + P ++ + ++ ++ +K+ +
Sbjct: 950 YESQIETSINLESPQVKRPSSHTLQEKQKERRNMIIKNLKNCDETCKEKQQRNNDECQNP 1009
Query: 198 LAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
KL+ + + Q I K ++ ++ + +F +
Sbjct: 1010 NENKIKQTSKLQNEMSDNQLDDEQIKKLKLAQEHIEFLEKWEAIIVGMKTSNFKFYCFNV 1069
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS--LEFSRSNQPRIIVAYGIFS 314
+ I Y I + L++ +A ++ + F + Q I + I
Sbjct: 1070 ITYYRKMIIMAIIMCLMDYTEIQVQLLVFQHICVAVYITKYMPFEKFAQNIINILSEILF 1129
Query: 315 GFMLYTIITIMKSFGKSGILLP--VAAALIPVILTISLSILILL 356
+ +I + I + I ILL
Sbjct: 1130 ILLELFVIRLSSQAVDQADQDERNHIGLWIICFFLSIIGIHILL 1173
>gi|226940221|ref|YP_002795295.1| magnesium-transporting ATPase MgtA [Laribacter hongkongensis HLHK9]
gi|226715148|gb|ACO74286.1| Magnesium-translocating P-type ATPase [Laribacter hongkongensis
HLHK9]
Length = 921
Score = 36.2 bits (81), Expect = 8.6, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 3/153 (1%)
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
L V + +D + + +F F S I + +
Sbjct: 759 LYDVSQIAIPFDNVDSELLMKPQQWRPEDIGRFMVFFGPISSVFDITTYALMWFVFGANT 818
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR---IIVAYGIFSGFMLYTIITI 324
+ F + +L ++ + ++V I ++ +
Sbjct: 819 PEHQALFQSGWFVVGLLTQTLIVHMIRTPRIPFVQSRAAPPLVVMTVIIMAIGIFLPMGP 878
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ K L P+ +P IL + + L++
Sbjct: 879 FAHYFKLETLPPLYFVFLPFILIGYMGLTQLMK 911
>gi|156102633|ref|XP_001617009.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148805883|gb|EDL47282.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 713
Score = 36.2 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 19/229 (8%), Positives = 61/229 (26%), Gaps = 8/229 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +KY + + LL I+VF + + I + + ++ +L
Sbjct: 481 MNKI-----YKYAIYSFFGELLVISIIVFSLFILRIIIKDNNKFSVILTMYGILYKIFCY 535
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++ +++I +N+ + ++
Sbjct: 536 IFAHYVLVMGLYILSIYYNIYVNKDIYEHSFNFFCYHYVYNNLHIHFLMLFYAFQNIIFT 595
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
A + ++ + + + I + ++ + + + + +
Sbjct: 596 INDAFNCIRMMFIIFKHIMVRIYEKITCKNFITFYELKEDKSPLSLNCMNKFKKKCNMNN 655
Query: 179 FTSITID-KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ I + + L + + I + S
Sbjct: 656 KCCRDKTCVEIDIDEIHELEYDKSQLPFPSLHQKPYCKNLDIKTYEQSL 704
>gi|297626291|ref|YP_003688054.1| hypothetical protein PFREUD_10970 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922056|emb|CBL56620.1| Hypothetical protein PFREUD_10970 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 544
Score = 35.8 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P L T++ ++ S + R + G+ +G LY++ ++ V
Sbjct: 52 FQPFGLWPTTVVGIALLSWLSDQARARRVAWCGLLAGLALYSMTVSFQA---------VV 102
Query: 339 AALIPVILTISLSILILL 356
A +PV++ L+ +LL
Sbjct: 103 AWWLPVLMVPVLACWVLL 120
>gi|271967714|ref|YP_003341910.1| hypothetical protein Sros_6453 [Streptosporangium roseum DSM 43021]
gi|270510889|gb|ACZ89167.1| hypothetical protein Sros_6453 [Streptosporangium roseum DSM 43021]
Length = 496
Score = 35.8 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LI + F R + + + + L + ++ ++ G V A ++
Sbjct: 384 ALIWPPIRRRFRRMAWTGLGLLVSVLAFITLLVLFSVNQA----GAWPAVLAGW---LVI 436
Query: 348 ISLSILILL 356
L++L+LL
Sbjct: 437 RILAVLMLL 445
>gi|195379302|ref|XP_002048419.1| GJ11362 [Drosophila virilis]
gi|194155577|gb|EDW70761.1| GJ11362 [Drosophila virilis]
Length = 903
Score = 35.8 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-----ASVSLEFSRS 301
R F+ + F + L IP++ + LI ++ +R+
Sbjct: 47 RDFFIEYYYICFVAFILAVLLFGIFIFVEKLRYIPVLNFIICLIIVELQIIALFALVART 106
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV-ILTISLSILILLQK 358
+I+ + + +L+ I I + L A L V L ++++I L+ +
Sbjct: 107 YWMDLIIFF-VICFVLLWLFILIGSVLPRKLDLTLDVAILFIVGFLFLAIAIYFLMYR 163
>gi|297834224|ref|XP_002884994.1| hypothetical protein ARALYDRAFT_478791 [Arabidopsis lyrata subsp.
lyrata]
gi|297330834|gb|EFH61253.1| hypothetical protein ARALYDRAFT_478791 [Arabidopsis lyrata subsp.
lyrata]
Length = 803
Score = 35.8 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P ++A+ ++ + + R+ ++
Sbjct: 647 SLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLLV 706
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G L+ + I F ++G L + + IP ++ +
Sbjct: 707 LFVGYLISKALWVQLNISGEF-RNGALPGLLSLSTKFIPTVMNLL 750
>gi|110740460|dbj|BAF02124.1| root hair defective 3 [Arabidopsis thaliana]
Length = 585
Score = 35.8 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P ++A+ ++ + + R+ ++
Sbjct: 430 SLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLLV 489
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G L+ + I F ++G+L + + IP ++ +
Sbjct: 490 LFVGYLVSKALWVQLNISGEF-QNGVLPGLLSLSTKFIPTVMNLL 533
>gi|42572425|ref|NP_974308.1| RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding [Arabidopsis thaliana]
gi|332641907|gb|AEE75428.1| Root hair defective 3 GTP-binding protein RHD3 [Arabidopsis
thaliana]
Length = 738
Score = 35.8 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P ++A+ ++ + + R+ ++
Sbjct: 583 SLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLLV 642
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G L+ + I F ++G+L + + IP ++ +
Sbjct: 643 LFVGYLVSKALWVQLNISGEF-QNGVLPGLLSLSTKFIPTVMNLL 686
>gi|15231390|ref|NP_188003.1| RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding [Arabidopsis thaliana]
gi|75279781|sp|P93042|RHD3_ARATH RecName: Full=Protein ROOT HAIR DEFECTIVE 3; AltName: Full=Protein
FRAGILE FIBER 4; AltName: Full=Protein SEY1 homolog 1
gi|1839188|gb|AAB58375.1| root hair defective 3 [Arabidopsis thaliana]
gi|20260178|gb|AAM12987.1| unknown protein [Arabidopsis thaliana]
gi|22136246|gb|AAM91201.1| unknown protein [Arabidopsis thaliana]
gi|332641908|gb|AEE75429.1| Root hair defective 3 GTP-binding protein RHD3 [Arabidopsis
thaliana]
Length = 802
Score = 35.8 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + K + + A + + P ++A+ ++ + + R+ ++
Sbjct: 647 SLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLLV 706
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTIS 349
+ G L+ + I F ++G+L + + IP ++ +
Sbjct: 707 LFVGYLVSKALWVQLNISGEF-QNGVLPGLLSLSTKFIPTVMNLL 750
>gi|258597760|ref|XP_001348489.2| conserved Plasmodium membrane protein, unknown function [Plasmodium
falciparum 3D7]
gi|255528833|gb|AAN36928.2| conserved Plasmodium membrane protein, unknown function [Plasmodium
falciparum 3D7]
Length = 5757
Score = 35.8 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 22/214 (10%), Positives = 57/214 (26%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y ++ + + + + L + + L ++ + +I
Sbjct: 645 YLYRDCIISFFLLYIFILYLYKYYNHIIKIRDISRLSYIIYVVVLLIHIMMYIKCLYNLI 704
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
I+LV+ VF N + + + I N +L + +
Sbjct: 705 RIISLVMFFFVFINTSLSYPNMKINNIIAYYNNTYNSICKFYLLYIPTIFNMYKYSSLLI 764
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I I + + I + S A + + + + D++
Sbjct: 765 CIYFIHTINVFVNCVTFILLHFIMILSFSLFMDMYICSAPILYDTHLSKKKIMNFEKDRR 824
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
+ + + + + L K+ Y
Sbjct: 825 YTFVSYSSSYALMRTINLIHLNKLYIYDIFIKRN 858
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.101 0.235
Lambda K H
0.267 0.0310 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,449,926,319
Number of Sequences: 14124377
Number of extensions: 49308627
Number of successful extensions: 1280895
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 10877
Number of HSP's that attempted gapping in prelim test: 1245319
Number of HSP's gapped (non-prelim): 32779
length of query: 361
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 221
effective length of database: 2,865,380,850
effective search space: 633249167850
effective search space used: 633249167850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 81 (36.2 bits)