RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
         (361 letters)



>gnl|CDD|151408 pfam10961, DUF2763, Protein of unknown function (DUF2763).  This
          eukaryotic family of proteins has no known function.
          Length = 91

 Score = 30.5 bits (69), Expect = 0.70
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVN-IVVFF 80
          ISRG VL  +R P  +  I+ F   +VN I +FF
Sbjct: 3  ISRGQVLDRSRSPWRLSIIVDFFWGIVNFISLFF 36


>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
           Provisional.
          Length = 495

 Score = 28.2 bits (63), Expect = 3.4
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQP-----RIIVAYGIFSGFMLYTIITIMKSFGK 330
           FLI +P++LV M L A  V  +  R +QP      +++   I    ++Y+  T +K F  
Sbjct: 164 FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILL--LVYSAKTALKGF-- 219

Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358
              L     +L  +   + L + I  Q 
Sbjct: 220 ---LSLWVTSLTLLTGALLLGLFIRTQL 244


>gnl|CDD|179608 PRK03612, PRK03612, spermidine synthase; Provisional.
          Length = 521

 Score = 28.3 bits (64), Expect = 3.6
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 36/101 (35%)

Query: 270 AETQFYFLIVIPLMLVAM------------TLIAASVSLEFSRSNQPRIIVA-YGIFSGF 316
           + TQF    VI LML AM               A  V++E        +++A  G  S  
Sbjct: 48  SVTQFS--TVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE--------LLLALLGGLSAL 97

Query: 317 MLYTIITIMKSFGKSGILLPVAAAL---------IPVILTI 348
           +LY              LL     L         IP+++ I
Sbjct: 98  ILYAAFAFQGLSR----LLLYVLVLLIGLLIGMEIPLLMRI 134


>gnl|CDD|180350 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
          Length = 697

 Score = 27.8 bits (63), Expect = 4.6
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 16/73 (21%)

Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
           A       +           + VA       ++  I+ +M        +LP+   L+ ++
Sbjct: 1   ANLAAMLRLPGNLKLLKWRDLAVA------ILVLAILAMM--------ILPLPPFLLDLL 46

Query: 346 LTISL--SILILL 356
           LT ++  S+LILL
Sbjct: 47  LTFNIALSVLILL 59


>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
          Length = 456

 Score = 27.8 bits (62), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 217 GRIPI-DKNSTTLNIPIKMDGFQKFSEQF 244
           G IP+ +  S+ L+IPI + GF   SE F
Sbjct: 399 GSIPVVETFSSQLHIPIVLMGFGLPSENF 427


>gnl|CDD|180530 PRK06328, PRK06328, type III secretion system protein; Validated.
          Length = 223

 Score = 27.4 bits (61), Expect = 5.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEY 214
           K  IIH    DLAI+   + +LKK+VEY
Sbjct: 132 KRIIIHVNPKDLAIVEKSRPELKKIVEY 159


>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU. 
           This protein was identified by the partial phylogenetic
           profiling algorithm (PubMed:16930487) as part of the
           system for cellulose biosynthesis in bacteria, and in
           fact is found in cellulose biosynthesis gene regions.
           The protein was designated YhjU in Salmonella
           enteritidis, where disruption of its gene disrupts
           cellulose biosynthesis and biofilm formation
           (PubMed:11929533).
          Length = 518

 Score = 27.3 bits (61), Expect = 6.3
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 33  LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN---RTSELV 89
           L+ + +Q G+L  +S+     L    V     Q++  + + V +V +  LN   R +  V
Sbjct: 67  LDRLWSQGGQLQGFSLGYLVELLGRFVNW---QML--LAIFVVLVAYLLLNQWIRVTTFV 121

Query: 90  ISRAIGISIWQLLNPFVVGS 109
           ++  I +S+WQ L+P +  +
Sbjct: 122 VAALIALSLWQALSPTLAVT 141


>gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein;
           Provisional.
          Length = 219

 Score = 27.1 bits (60), Expect = 6.5
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 19/95 (20%)

Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV-------------------SLE 297
           S  +++++   ++     YFL+ + L   A+T  A++V                    L 
Sbjct: 7   SSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLT 66

Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
           +  +N+P  I++   F+GF+ Y +  I+ ++  +G
Sbjct: 67  YKTANKPTGILSAFAFTGFLGYILGPILNTYLSAG 101


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,968,022
Number of extensions: 399878
Number of successful extensions: 1386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 69
Length of query: 361
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 266
Effective length of database: 3,941,713
Effective search space: 1048495658
Effective search space used: 1048495658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)