RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] (361 letters) >gnl|CDD|151408 pfam10961, DUF2763, Protein of unknown function (DUF2763). This eukaryotic family of proteins has no known function. Length = 91 Score = 30.5 bits (69), Expect = 0.70 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVN-IVVFF 80 ISRG VL +R P + I+ F +VN I +FF Sbjct: 3 ISRGQVLDRSRSPWRLSIIVDFFWGIVNFISLFF 36 >gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA; Provisional. Length = 495 Score = 28.2 bits (63), Expect = 3.4 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQP-----RIIVAYGIFSGFMLYTIITIMKSFGK 330 FLI +P++LV M L A V + R +QP +++ I ++Y+ T +K F Sbjct: 164 FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILL--LVYSAKTALKGF-- 219 Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358 L +L + + L + I Q Sbjct: 220 ---LSLWVTSLTLLTGALLLGLFIRTQL 244 >gnl|CDD|179608 PRK03612, PRK03612, spermidine synthase; Provisional. Length = 521 Score = 28.3 bits (64), Expect = 3.6 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 36/101 (35%) Query: 270 AETQFYFLIVIPLMLVAM------------TLIAASVSLEFSRSNQPRIIVA-YGIFSGF 316 + TQF VI LML AM A V++E +++A G S Sbjct: 48 SVTQFS--TVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE--------LLLALLGGLSAL 97 Query: 317 MLYTIITIMKSFGKSGILLPVAAAL---------IPVILTI 348 +LY LL L IP+++ I Sbjct: 98 ILYAAFAFQGLSR----LLLYVLVLLIGLLIGMEIPLLMRI 134 >gnl|CDD|180350 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated. Length = 697 Score = 27.8 bits (63), Expect = 4.6 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 16/73 (21%) Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345 A + + VA ++ I+ +M +LP+ L+ ++ Sbjct: 1 ANLAAMLRLPGNLKLLKWRDLAVA------ILVLAILAMM--------ILPLPPFLLDLL 46 Query: 346 LTISL--SILILL 356 LT ++ S+LILL Sbjct: 47 LTFNIALSVLILL 59 >gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional. Length = 456 Score = 27.8 bits (62), Expect = 5.0 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 217 GRIPI-DKNSTTLNIPIKMDGFQKFSEQF 244 G IP+ + S+ L+IPI + GF SE F Sbjct: 399 GSIPVVETFSSQLHIPIVLMGFGLPSENF 427 >gnl|CDD|180530 PRK06328, PRK06328, type III secretion system protein; Validated. Length = 223 Score = 27.4 bits (61), Expect = 5.9 Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEY 214 K IIH DLAI+ + +LKK+VEY Sbjct: 132 KRIIIHVNPKDLAIVEKSRPELKKIVEY 159 >gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533). Length = 518 Score = 27.3 bits (61), Expect = 6.3 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN---RTSELV 89 L+ + +Q G+L +S+ L V Q++ + + V +V + LN R + V Sbjct: 67 LDRLWSQGGQLQGFSLGYLVELLGRFVNW---QML--LAIFVVLVAYLLLNQWIRVTTFV 121 Query: 90 ISRAIGISIWQLLNPFVVGS 109 ++ I +S+WQ L+P + + Sbjct: 122 VAALIALSLWQALSPTLAVT 141 >gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein; Provisional. Length = 219 Score = 27.1 bits (60), Expect = 6.5 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 19/95 (20%) Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV-------------------SLE 297 S +++++ ++ YFL+ + L A+T A++V L Sbjct: 7 SSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLT 66 Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332 + +N+P I++ F+GF+ Y + I+ ++ +G Sbjct: 67 YKTANKPTGILSAFAFTGFLGYILGPILNTYLSAG 101 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.142 0.411 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,968,022 Number of extensions: 399878 Number of successful extensions: 1386 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1380 Number of HSP's successfully gapped: 69 Length of query: 361 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 266 Effective length of database: 3,941,713 Effective search space: 1048495658 Effective search space used: 1048495658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.1 bits)