RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
(361 letters)
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine
kinase, splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
(A:99-339)
Length = 241
Score = 29.5 bits (64), Expect = 0.76
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
IK +GF F + Y+I K ++F + + + H
Sbjct: 9 IKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTH 43
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor
complex, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A
{Homo sapiens} PDB: 2oza_A 3fyk_X* 3fyj_X* 2p3g_X*
3ka0_A* 3fpm_A* 2pzy_A* 3kc3_A* 2jbo_A* 2jbp_A*
(A:108-336)
Length = 229
Score = 28.6 bits (62), Expect = 1.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
I+ G Q F+E+ A+ +I + F + NI H
Sbjct: 10 IQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRD 46
>2onk_C Molybdate/tungstate ABC transporter, permease protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(C:1-68,C:250-284)
Length = 103
Score = 28.0 bits (62), Expect = 1.7
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
H++ + YF + L+ A+ + +S+ L F +++ L+ +
Sbjct: 10 HHHSSGENLYFQGHMRLLFSALLALLSSIILLF-------VLLPVAATVTLQLFNFDEFL 62
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
K+ +PVAA LI + L + +++ I++ +ED
Sbjct: 63 KAASDPSAAMPVAAILILLSLAVFVALRIIVGRED 97
>1ua2_A CAK, cell division protein kinase 7, TFIIH basal; cell
cycle, phosphorylation, protein-protein interaction,
cell cycle, transferase; HET: TPO ATP; 3.02A {Homo
sapiens} (A:94-346)
Length = 253
Score = 27.6 bits (59), Expect = 2.3
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ ++ + + ++ I H
Sbjct: 14 LVLTPSHIKAYMLMTLQGLEYLHQHWILH 42
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transferase; HET: STU; 2.70A {Homo
sapiens} (A:142-400)
Length = 259
Score = 27.7 bits (60), Expect = 2.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
I+ G Q F+E+ AS I + + + + NI H
Sbjct: 9 IQDRGDQAFTEREASEIXKSIGEAIQYLHSINIAH 43
>3bqc_A Casein kinase II subunit alpha; protein kinase CK2,
eukaryotic protein kinases, emodin, ATP-competitive
inhibitor, ATP-binding, nucleotide-binding; HET: EMO;
1.50A {Homo sapiens} (A:123-335)
Length = 213
Score = 27.6 bits (59), Expect = 2.6
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+Q ++ YEI+K + + + I H
Sbjct: 3 YQTLTDYDIRFYMYEILKALDYCHSMGIMH 32
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell
cycle, phosphorylation, ATP- binding, cell division,
disease mutation, kinase, nucleotide-binding; 3.00A
{Homo sapiens} (A:102-308)
Length = 207
Score = 27.0 bits (58), Expect = 4.2
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ + + ++ + F + + I H
Sbjct: 8 LDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVH 42
>2r3i_A Cell division protein kinase 2; serine/threonine-protein
kinase, cell cycle, inhibition, cyclin-dependent kinase,
cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB:
2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A*
2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A
1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
(A:83-298)
Length = 216
Score = 26.8 bits (57), Expect = 4.7
Identities = 2/36 (5%), Positives = 12/36 (33%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ +++++ ++F + + H
Sbjct: 9 MDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHR 44
>3gl3_A Putative thiol:disulfide interchange protein DSBE;
oxidoreductase, PSI-II, structural genomics, protein
structure initiative; 2.09A {Chlorobium tepidum tls}
(A:)
Length = 152
Score = 26.0 bits (56), Expect = 8.6
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSITIDKKNKIIHR 193
Q N D + D ++ + + K P + TS ID+ K++ +
Sbjct: 62 FQVVAVNLDAKTGDAXKFLAQVPAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQ 121
Query: 194 KDADLAIIYNDKVK-LKKVVE 213
+ + +
Sbjct: 122 HVGFRPADKEALEQQILAALG 142
>2eu9_A Dual specificity protein kinase CLK3; kinase domain,
transferase; 1.53A {Homo sapiens} PDB: 2exe_A
(A:104-238,A:299-355)
Length = 192
Score = 25.9 bits (56), Expect = 9.6
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+K + FQ + Y++ + F +++ + H
Sbjct: 9 LKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTH 43
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.142 0.411
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,673,280
Number of extensions: 119898
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 26
Length of query: 361
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 271
Effective length of database: 1,913,599
Effective search space: 518585329
Effective search space used: 518585329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)