RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] (361 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.013 Identities = 61/344 (17%), Positives = 100/344 (29%), Gaps = 153/344 (44%) Query: 44 PN--YSISRGAVLAATRVPLI--IQQIIPFITLVVNIVVFFNLNRT-------------- 85 P+ Y +S PLI IQ L +V L T Sbjct: 226 PDKDYLLS-----IPISCPLIGVIQ-------LAHYVVTAKLLGFTPGELRSYLKGATGH 273 Query: 86 SE-LVISRAIGISI-W-----------QLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132 S+ LV + AI + W +L F +G + + P Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPP---------- 321 Query: 133 DLIQQWKDNGDKQKSDIIPWMQISN-PQQDI--FIGA-KKILPEN-HIWEDFTSITI--D 185 +++ +N + S P + ISN Q+ + ++ LP + I++ Sbjct: 322 SILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQV-----EISLVNG 373 Query: 186 KKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQKFS 241 KN ++ + +Y + L+K K + L+ IP FS Sbjct: 374 AKNLVV----SGPPQSLYGLNLTLRKA-----------KAPSGLDQSRIP--------FS 410 Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301 E +K+ FSN+ FL P +A+ Sbjct: 411 E-----------RKLKFSNR--------------FL---P--------VAS--------- 425 Query: 302 NQPRIIVAYGIFSGFMLYTIIT-IMKSFGKSGILLPVAAALIPV 344 P F +L I K K+ + IPV Sbjct: 426 --P--------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459 Score = 28.4 bits (63), Expect = 2.4 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Query: 111 LLGIFTV---LVINPIATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDI 162 L ++ LV + I S E + +LI+ + +K + +I+ W++ + D Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETL-SELIRT-TLDAEKVFTQGLNILEWLENPSNTPDK 228 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 32.2 bits (72), Expect = 0.16 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 19/63 (30%) Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195 Q+W++ K K D+ W Q + Q + KI N I DK + D Sbjct: 110 QEWRE---KAKKDLEEWNQRQSEQ----VEKNKI--NNRI--------ADK--AFYQQPD 150 Query: 196 ADL 198 AD+ Sbjct: 151 ADI 153 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Length = 289 Score = 31.5 bits (70), Expect = 0.31 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 10/114 (8%) Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150 +++IG+ + I+ + + G LI N +++ + Sbjct: 7 TKSIGLLATSSEAAY-FAEIIEAVEKNC---------FQKGYTLILGNAWNNLEKQRAYL 56 Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204 M + + ++ P + E++ I + + + D A+I N Sbjct: 57 SMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNA 110 >2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, coiled coil, metal-binding, phosphoprotein; NMR {Homo sapiens} Length = 112 Score = 26.9 bits (59), Expect = 7.1 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 11/90 (12%) Query: 171 PENHIW----EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226 EN + E T + I H D + + KV + ++Q + + Sbjct: 11 RENLYFQGNNEKVTLVRIADLEN--HNNDGGFWTVIDGKV--YDIKDFQTQSLTENSILA 66 Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256 D E + Sbjct: 67 QFA---GEDPVVALEAALQFEDTRESMHAF 93 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.142 0.411 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,114,784 Number of extensions: 148296 Number of successful extensions: 529 Number of sequences better than 10.0: 1 Number of HSP's gapped: 529 Number of HSP's successfully gapped: 26 Length of query: 361 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 267 Effective length of database: 3,414,294 Effective search space: 911616498 Effective search space used: 911616498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (26.3 bits)