RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
         (361 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.013
 Identities = 61/344 (17%), Positives = 100/344 (29%), Gaps = 153/344 (44%)

Query: 44  PN--YSISRGAVLAATRVPLI--IQQIIPFITLVVNIVVFFNLNRT-------------- 85
           P+  Y +S          PLI  IQ       L   +V    L  T              
Sbjct: 226 PDKDYLLS-----IPISCPLIGVIQ-------LAHYVVTAKLLGFTPGELRSYLKGATGH 273

Query: 86  SE-LVISRAIGISI-W-----------QLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
           S+ LV + AI  +  W            +L  F +G      +    + P          
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPP---------- 321

Query: 133 DLIQQWKDNGDKQKSDIIPWMQISN-PQQDI--FIGA-KKILPEN-HIWEDFTSITI--D 185
            +++   +N +   S   P + ISN  Q+ +  ++      LP    +      I++   
Sbjct: 322 SILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQV-----EISLVNG 373

Query: 186 KKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQKFS 241
            KN ++    +     +Y   + L+K            K  + L+   IP        FS
Sbjct: 374 AKNLVV----SGPPQSLYGLNLTLRKA-----------KAPSGLDQSRIP--------FS 410

Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
           E           +K+ FSN+              FL   P        +A+         
Sbjct: 411 E-----------RKLKFSNR--------------FL---P--------VAS--------- 425

Query: 302 NQPRIIVAYGIFSGFMLYTIIT-IMKSFGKSGILLPVAAALIPV 344
             P        F   +L      I K   K+ +        IPV
Sbjct: 426 --P--------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459



 Score = 28.4 bits (63), Expect = 2.4
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 111 LLGIFTV---LVINPIATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDI 162
           L  ++     LV + I  S E +  +LI+    + +K  +   +I+ W++  +   D 
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETL-SELIRT-TLDAEKVFTQGLNILEWLENPSNTPDK 228


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 32.2 bits (72), Expect = 0.16
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 19/63 (30%)

Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
           Q+W++   K K D+  W Q  + Q    +   KI   N I         DK      + D
Sbjct: 110 QEWRE---KAKKDLEEWNQRQSEQ----VEKNKI--NNRI--------ADK--AFYQQPD 150

Query: 196 ADL 198
           AD+
Sbjct: 151 ADI 153


>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory
           protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB:
           1jhz_A
          Length = 289

 Score = 31.5 bits (70), Expect = 0.31
 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 91  SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
           +++IG+        +    I+  +              + G  LI     N  +++   +
Sbjct: 7   TKSIGLLATSSEAAY-FAEIIEAVEKNC---------FQKGYTLILGNAWNNLEKQRAYL 56

Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
             M        + + ++   P   + E++  I +   +    + D   A+I N 
Sbjct: 57  SMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNA 110


>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
           function, HERC2 cytochrome domain, coiled coil,
           metal-binding, phosphoprotein; NMR {Homo sapiens}
          Length = 112

 Score = 26.9 bits (59), Expect = 7.1
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 11/90 (12%)

Query: 171 PENHIW----EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
            EN  +    E  T + I       H  D     + + KV    + ++Q   +  +    
Sbjct: 11  RENLYFQGNNEKVTLVRIADLEN--HNNDGGFWTVIDGKV--YDIKDFQTQSLTENSILA 66

Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
                   D               E +   
Sbjct: 67  QFA---GEDPVVALEAALQFEDTRESMHAF 93


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,114,784
Number of extensions: 148296
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 26
Length of query: 361
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 267
Effective length of database: 3,414,294
Effective search space: 911616498
Effective search space used: 911616498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.3 bits)