BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
(361 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 361
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP
Sbjct: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI
Sbjct: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED
Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 361
Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIV 77
FL+ + +VF+ + +I ++ + + + S +L + +P ++ + PF +
Sbjct: 16 FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
V ++NR +EL+I G S L+ P + +ILL IF
Sbjct: 76 VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 33.1 bits (74), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQ---QDIFIGA-----KKILPENH-----IWEDFTSI 182
++W+D + WMQ ++P+ +D+FIG KK + H +W +
Sbjct: 473 EEWED-----AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
Query: 183 ---TIDKKNKIIHRKDADLAIIYNDKVK 207
TI+ II RK D+ ++Y K K
Sbjct: 528 FEQTIENGKAIIARKRRDVPLVYMKKDK 555
>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291
Q F E S +F II + ++ +F+ YR A+ + L + T
Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
EF + + V Y +F G YT + S G++ ++ +A ++ SL
Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
Query: 352 I 352
+
Sbjct: 235 L 235
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291
Q F E S +F II + ++ +F+ YR A+ + L + T
Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
EF + + V Y +F G YT + S G++ ++ +A ++ SL
Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
Query: 352 I 352
+
Sbjct: 235 L 235
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
MSF N N F+N + I++P++ + M L+
Sbjct: 1 MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLV 35
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 319 YTIITIMKSFGKSGILLPVA 338
Y I+ ++ SFG++GI + V+
Sbjct: 277 YKIVRVLNSFGEAGIAIDVS 296
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.142 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,821
Number of Sequences: 1233
Number of extensions: 10059
Number of successful extensions: 47
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 16
length of query: 361
length of database: 328,796
effective HSP length: 75
effective length of query: 286
effective length of database: 236,321
effective search space: 67587806
effective search space used: 67587806
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)