HHsearch alignment for GI: 255764470 and conserved domain: cd04582

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.07  E-value=4.5e-09  Score=85.32  Aligned_cols=105  Identities=15%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCHHHHHHH
Q ss_conf             02899608999899999998579978888767855278888888876202024660168873274352389998999998
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMER  393 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~lir~~~~Vpe~~~l~~lL~~  393 (523)
T Consensus         1 t~pvtv~pd~~l~eA~~lm~~~~~~~l~VVd~~-g~l~Givt~~Dl~~~~~~---~v~d~m~~~~~tv~~d~~l~~a~~~   76 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASGG---CCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHCCC---CHHHCCCCCCEEECCCCCHHHHHHH
T ss_conf             998389998939999999997399879999799-978999899998763089---5345102576699799999999999


Q ss_pred             HHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf             85038627775228674256525999999
Q gi|255764470|r  394 LRKSSQTFVMVLDEYGVLEGMITPANILE  422 (523)
Q Consensus       394 fr~~~~~lAiVvDE~G~~~GIVTleDIlE  422 (523)
T Consensus        77 M~~~~i~~lPVVD~~grlvGivT~~Di~~  105 (106)
T cd04582          77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             99729876258989990999998688425