HHsearch alignment for GI: 255764470 and conserved domain: cd04582
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.07 E-value=4.5e-09 Score=85.32 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=91.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCHHHHHHH
Q ss_conf 02899608999899999998579978888767855278888888876202024660168873274352389998999998
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMER 393 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~lir~~~~Vpe~~~l~~lL~~ 393 (523)
T Consensus 1 t~pvtv~pd~~l~eA~~lm~~~~~~~l~VVd~~-g~l~Givt~~Dl~~~~~~---~v~d~m~~~~~tv~~d~~l~~a~~~ 76 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASGG---CCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHCCC---CHHHCCCCCCEEECCCCCHHHHHHH
T ss_conf 998389998939999999997399879999799-978999899998763089---5345102576699799999999999
Q ss_pred HHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf 85038627775228674256525999999
Q gi|255764470|r 394 LRKSSQTFVMVLDEYGVLEGMITPANILE 422 (523)
Q Consensus 394 fr~~~~~lAiVvDE~G~~~GIVTleDIlE 422 (523)
T Consensus 77 M~~~~i~~lPVVD~~grlvGivT~~Di~~ 105 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 99729876258989990999998688425