HHsearch alignment for GI: 255764470 and conserved domain: cd04583
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.16 E-value=4.4e-10 Score=92.72 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=93.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHH-CCCEEECCCCCHHHHHH
Q ss_conf 02899608999899999998579978888767855278888888876202024660168873-27435238999899999
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSI-RKPLVVHENISVLKLME 392 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~li-r~~~~Vpe~~~l~~lL~ 392 (523)
T Consensus 2 r~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~-~~lvGivt~~di~~~~~~~~--~v~~im~~~~~tv~~~~~~~~a~~ 78 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKEAK--SLEDIMLEDVFTVQPDASLRDVLG 78 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEHHHHHHCCCCCC--EEEECCEEEEEEECCCCCHHHHHH
T ss_conf 989997993979999999997399789999589-98999998104343005896--787512620289748999999999
Q ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 8850386277752286742565259999998
Q gi|255764470|r 393 RLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 79 ~m~~~~~~~lPVVd~~~~lvGiiT~~dll~t 109 (109)
T cd04583 79 LVLKRGPKYVPVVDEDGKLVGLITRSSLVDT 109 (109)
T ss_pred HHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9985598388899649999999996882376