HHsearch alignment for GI: 255764470 and conserved domain: cd04585
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.29 E-value=7.7e-11 Score=98.23 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=93.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC-------------CCHHHHHH-CCCE
Q ss_conf 028996089998999999985799788887678552788888888762020246-------------60168873-2743
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG-------------SMNFKRSI-RKPL 379 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~-------------~~~~~~li-r~~~ 379 (523)
T Consensus 1 rdpvti~~~~tl~ea~~~m~~~~~~~lpVvd~--~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 78 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCE
T ss_conf 99899689296999999999739988999989--9999999889999877504655333554212038899995778988
Q ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 52389998999998850386277752286742565259999998
Q gi|255764470|r 380 VVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 380 ~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 79 tv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiiT~~DilkA 122 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99388669999999987598789999589989999987897469