HHsearch alignment for GI: 255764470 and conserved domain: cd04594
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.29 E-value=6e-11 Score=99.04 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=88.5
Q ss_pred EEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHH
Q ss_conf 99608999899999998579978888767855278888888876202024660168873274352389998999998850
Q gi|255764470|r 317 VWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRK 396 (523)
Q Consensus 317 ~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~lir~~~~Vpe~~~l~~lL~~fr~ 396 (523)
T Consensus 4 VtV~pd~tV~eA~~lM~~~~i~~lPVvd~--~klvGIvt~rDi~~~~~--~~-v~d~Mt~~v~tv~p~~~l~ea~~lM~~ 78 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY--GD-VVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHCCC--CC-HHHEEECCCEEECCCCCHHHHHHHHHH
T ss_conf 79899993999999999839887889989--99999999799652469--98-445476398889998979999999998
Q ss_pred CCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 386277752286742565259999998
Q gi|255764470|r 397 SSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 397 ~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 79 ~~i~~lPVvd~-gklvGIIT~~Dil~A 104 (104)
T cd04594 79 NKTRWCPVVDD-GKFKGIVTLDSILDA 104 (104)
T ss_pred CCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 69787899989-999999996895378