HHsearch alignment for GI: 255764470 and conserved domain: cd04595

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08  E-value=1.6e-09  Score=88.64  Aligned_cols=106  Identities=22%  Similarity=0.340  Sum_probs=91.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC-CCHHHHH-HCCCEEECCCCCHHHHH
Q ss_conf             028996089998999999985799788887678552788888888762020246-6016887-32743523899989999
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG-SMNFKRS-IRKPLVVHENISVLKLM  391 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~-~~~~~~l-ir~~~~Vpe~~~l~~lL  391 (523)
T Consensus         2 spV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~--~~lvGivT~~Di~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~a~   79 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCCEEEEECCEEEECCCCCHHHHH
T ss_conf             89899799599999999999759988999989--9999999768988776537678812103253668866999399999


Q ss_pred             HHHHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf             9885038627775228674256525999999
Q gi|255764470|r  392 ERLRKSSQTFVMVLDEYGVLEGMITPANILE  422 (523)
Q Consensus       392 ~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE  422 (523)
T Consensus        80 ~~m~~~~~~~lpVvd~-g~lvGiit~~Dilk  109 (110)
T cd04595          80 ELMVEHDIGRVPVVED-GRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHCCCEEEEEEEC-CEEEEEEEHHHEEC
T ss_conf             9889749139999989-99999998415615