HHsearch alignment for GI: 255764470 and conserved domain: cd04598
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00026 Score=50.50 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=66.0
Q ss_pred CCCEEECCCCCHHHHHHHHHHC-CCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCC-CCCCCCEEEECCCEEEEEECCC
Q ss_conf 2743523899989999988503-8627775228674256525999999870664457-8886312883498599870011
Q gi|255764470|r 376 RKPLVVHENISVLKLMERLRKS-SQTFVMVLDEYGVLEGMITPANILEAIAGDFPDE-DDQKLDITVGDDGSLTVDGWID 453 (523)
Q Consensus 376 r~~~~Vpe~~~l~~lL~~fr~~-~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE-~d~~~~i~~~~d~~~~v~G~~~ 453 (523)
T Consensus 1 rpv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~-~r~vGiisr~dl~~~~~~~~g~~l~~~~pV~~~M~~~p~~v~~~~~ 79 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP 79 (119)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC-CEEEEEEEHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCEEECCCCC
T ss_conf 998574999849999999987899676899879-9889999899999987074322330389589971689879989896
Q ss_pred HHHHHHHH
Q ss_conf 99999982
Q gi|255764470|r 454 VRYASKLF 461 (523)
Q Consensus 454 l~el~~~l 461 (523)
T Consensus 80 i~~~~~~~ 87 (119)
T cd04598 80 LEEVSRLA 87 (119)
T ss_pred HHHHHHHH
T ss_conf 99999999