HHsearch alignment for GI: 255764470 and conserved domain: cd04599
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.7e-09 Score=88.33 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHH-HHCCCEEECCCCCHHHHHH
Q ss_conf 028996089998999999985799788887678552788888888762020246601688-7327435238999899999
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKR-SIRKPLVVHENISVLKLME 392 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~-lir~~~~Vpe~~~l~~lL~ 392 (523)
T Consensus 1 rd~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~--~~lvGivT~~Dl~~~~~~---~~v~~iMt~~~itv~~~~~l~~a~~ 75 (105)
T cd04599 1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHPN---RLVADAMTREVVTISPEASLLEAKR 75 (105)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHCCCCC---CCHHHHCCCCCEEECCCCCHHHHHH
T ss_conf 99899689498999999998639988999999--999899981053127888---7968850279899979491999999
Q ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 8850386277752286742565259999998
Q gi|255764470|r 393 RLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 76 ~M~~~~i~~lpVvd~-g~lvGiiT~~Divre 105 (105)
T cd04599 76 LMEEKKIERLPVLRE-RKLVGIITKGTIALE 105 (105)
T ss_pred HHHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf 779859979999989-999999994586158