HHsearch alignment for GI: 255764470 and conserved domain: cd04599

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09  E-value=1.7e-09  Score=88.33  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=90.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHH-HHCCCEEECCCCCHHHHHH
Q ss_conf             028996089998999999985799788887678552788888888762020246601688-7327435238999899999
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKR-SIRKPLVVHENISVLKLME  392 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~-lir~~~~Vpe~~~l~~lL~  392 (523)
T Consensus         1 rd~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~--~~lvGivT~~Dl~~~~~~---~~v~~iMt~~~itv~~~~~l~~a~~   75 (105)
T cd04599           1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHPN---RLVADAMTREVVTISPEASLLEAKR   75 (105)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHCCCCC---CCHHHHCCCCCEEECCCCCHHHHHH
T ss_conf             99899689498999999998639988999999--999899981053127888---7968850279899979491999999


Q ss_pred             HHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf             8850386277752286742565259999998
Q gi|255764470|r  393 RLRKSSQTFVMVLDEYGVLEGMITPANILEA  423 (523)
Q Consensus       393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~  423 (523)
T Consensus        76 ~M~~~~i~~lpVvd~-g~lvGiiT~~Divre  105 (105)
T cd04599          76 LMEEKKIERLPVLRE-RKLVGIITKGTIALE  105 (105)
T ss_pred             HHHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf             779859979999989-999999994586158