HHsearch alignment for GI: 255764470 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.87 E-value=4.8e-05 Score=55.89 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=54.4
Q ss_pred HCCCCEEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHH
Q ss_conf 113786674653400028996089998999999985799788887678552788888888762
Q gi|255764470|r 299 LTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLR 361 (523)
Q Consensus 299 L~L~e~~V~~IMtPR~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~ 361 (523)
T Consensus 52 ~~~~~~~v~~iMt~~~~~i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~-g~LvGiIT~~Di~k 113 (114)
T cd04602 52 LTDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEECHHHCC
T ss_conf 507676563516527668994798789999999997496678199789-96999999244036