HHsearch alignment for GI: 255764470 and conserved domain: cd04604

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.62  E-value=0.00057  Score=48.02  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCHHH
Q ss_conf             74352389998999998850386277752286742565259999998706644578886312883498599870011999
Q gi|255764470|r  377 KPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRY  456 (523)
Q Consensus       377 ~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~~~d~~~~v~G~~~l~e  456 (523)
T Consensus         3 ~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM--~~~~~tv~~~~~i~~   80 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVM--TRNPKTIDPDALAAE   80 (114)
T ss_pred             CCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHH--CCCCEEEECCCCHHH
T ss_conf             477889949399999999976997899997999399999899999998716664567974743--567589938988699


Q ss_pred             HHHHH
Q ss_conf             99982
Q gi|255764470|r  457 ASKLF  461 (523)
Q Consensus       457 l~~~l  461 (523)
T Consensus        81 a~~~m   85 (114)
T cd04604          81 ALELM   85 (114)
T ss_pred             HHHHH
T ss_conf             99999