HHsearch alignment for GI: 255764470 and conserved domain: cd04608
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.59 E-value=7.7e-07 Score=68.98 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=84.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCC---CHHHH-HHCCCEEECCCCCHHH
Q ss_conf 0289960899989999999857997888876785527888888887620202466---01688-7327435238999899
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS---MNFKR-SIRKPLVVHENISVLK 389 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~---~~~~~-lir~~~~Vpe~~~l~~ 389 (523)
T Consensus 2 ~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~-g~~~G~vt~~~ll~~~~~~~~~~~~~V~~vm~~~~~~v~~~~~l~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHH
T ss_conf 999798998909999999998499856898799-9688888799999999738999998289974465651479985567
Q ss_pred ---------HHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHH
Q ss_conf ---------99988503862777522867425652599999987
Q gi|255764470|r 390 ---------LMERLRKSSQTFVMVLDEYGVLEGMITPANILEAI 424 (523)
Q Consensus 390 ---------lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~I 424 (523)
T Consensus 81 ls~~l~~~~~~lvv~~~~~~~~~v~~~~~k~vGIvTr~DLL~yl 124 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHC
T ss_conf 31036732789999986025676277799899998679977039