HHsearch alignment for GI: 255764470 and conserved domain: cd04612

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39  E-value=4.1e-12  Score=107.54  Aligned_cols=108  Identities=19%  Similarity=0.346  Sum_probs=94.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCH--HH-HHHCCCEEECCCCCHHHH
Q ss_conf             028996089998999999985799788887678552788888888762020246601--68-873274352389998999
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMN--FK-RSIRKPLVVHENISVLKL  390 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~--~~-~lir~~~~Vpe~~~l~~l  390 (523)
T Consensus         1 Pdvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~--~~l~Givt~~di~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a   78 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf             98499999295999999999719948999999--9999999899999877514777756999970796052999979999


Q ss_pred             HHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf             998850386277752286742565259999998
Q gi|255764470|r  391 MERLRKSSQTFVMVLDEYGVLEGMITPANILEA  423 (523)
Q Consensus       391 L~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~  423 (523)
T Consensus        79 ~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA  111 (111)
T cd04612          79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             999997698199999689989999986886349