HHsearch alignment for GI: 255764470 and conserved domain: cd04612
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39 E-value=4.1e-12 Score=107.54 Aligned_cols=108 Identities=19% Similarity=0.346 Sum_probs=94.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCH--HH-HHHCCCEEECCCCCHHHH
Q ss_conf 028996089998999999985799788887678552788888888762020246601--68-873274352389998999
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMN--FK-RSIRKPLVVHENISVLKL 390 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~--~~-~lir~~~~Vpe~~~l~~l 390 (523)
T Consensus 1 Pdvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~--~~l~Givt~~di~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 78 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 98499999295999999999719948999999--9999999899999877514777756999970796052999979999
Q ss_pred HHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 998850386277752286742565259999998
Q gi|255764470|r 391 MERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 391 L~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 79 ~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA 111 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 999997698199999689989999986886349