HHsearch alignment for GI: 255764470 and conserved domain: cd04614

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.94  E-value=1.3e-08  Score=81.92  Aligned_cols=95  Identities=12%  Similarity=0.198  Sum_probs=87.7

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHCCCEEECCCCCHHHHHHH
Q ss_conf             02899608999899999998579978888767855278888888876202024660168873274352389998999998
Q gi|255764470|r  314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNFKRSIRKPLVVHENISVLKLMER  393 (523)
Q Consensus       314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~~~lir~~~~Vpe~~~l~~lL~~  393 (523)
T Consensus         1 rdv~tv~~~~~v~~a~~~m~~~~i~~lpVvd~~-g~lvGIiT~rDli~~-------------~~~itv~~~~~v~eaa~l   66 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAK-------------SEVVTATKRTTVSECAQK   66 (96)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEECHHHCCC-------------CCCEEECCCCCHHHHHHH
T ss_conf             996390896989999999997299879999899-949999988888257-------------788797998909999999


Q ss_pred             HHHCCCEEEEEECCCCCEEEEEEHHHHHH
Q ss_conf             85038627775228674256525999999
Q gi|255764470|r  394 LRKSSQTFVMVLDEYGVLEGMITPANILE  422 (523)
Q Consensus       394 fr~~~~~lAiVvDE~G~~~GIVTleDIlE  422 (523)
T Consensus        67 M~~~~I~~LPVvd~~~~lvGiit~~Dllk   95 (96)
T cd04614          67 MKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHCCCCEEEEECCCCCEEEEEEHHHCCC
T ss_conf             99859988628989991999988798048