HHsearch alignment for GI: 255764470 and conserved domain: cd04627
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00084 Score=46.78 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=58.0
Q ss_pred CCCEEECCCCCHHHHHHHHHHCCCEEEEEECC-CCCEEEEEEHHHHHHHHCCCCCCCCCC----CCCEEE---ECCCEEE
Q ss_conf 27435238999899999885038627775228-674256525999999870664457888----631288---3498599
Q gi|255764470|r 376 RKPLVVHENISVLKLMERLRKSSQTFVMVLDE-YGVLEGMITPANILEAIAGDFPDEDDQ----KLDITV---GDDGSLT 447 (523)
Q Consensus 376 r~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE-~G~~~GIVTleDIlE~IvGei~DE~d~----~~~i~~---~~d~~~~ 447 (523)
T Consensus 1 ~Pfi~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vit 80 (123)
T cd04627 1 EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEE
T ss_conf 99648489892999999997499777999958999499999979999999863765661445411200233237677179
Q ss_pred EEECCCHHHHHHHH
Q ss_conf 87001199999982
Q gi|255764470|r 448 VDGWIDVRYASKLF 461 (523)
Q Consensus 448 v~G~~~l~el~~~l 461 (523)
T Consensus 81 i~~d~~l~~A~~lM 94 (123)
T cd04627 81 INGDQPLIDALHLM 94 (123)
T ss_pred ECCCCCHHHHHHHH
T ss_conf 89999599999999