HHsearch alignment for GI: 255764470 and conserved domain: cd04802
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.98 E-value=1e-08 Score=82.68 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=90.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCC----CCCHHHHHH-CCCEEECCCCCHH
Q ss_conf 02899608999899999998579978888767855278888888876202024----660168873-2743523899989
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEE----GSMNFKRSI-RKPLVVHENISVL 388 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~----~~~~~~~li-r~~~~Vpe~~~l~ 388 (523)
T Consensus 1 r~vvti~~~~tl~~a~~~m~~~~i~~l~V~d~--~~~vGivt~~Di~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~l~ 78 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCHHH
T ss_conf 99789689198999999999749987999989--9999999821878888754798123899997234855994798699
Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHH
Q ss_conf 999988503862777522867425652599999
Q gi|255764470|r 389 KLMERLRKSSQTFVMVLDEYGVLEGMITPANIL 421 (523)
Q Consensus 389 ~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIl 421 (523)
T Consensus 79 ~a~~~m~~~~~~~lpVvd~-~~lvGiIt~~Dil 110 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIV 110 (112)
T ss_pred HHHHHHHHHCCCEEEEEEC-CEEEEEEECHHHC
T ss_conf 9999878719858999989-9999999806710