BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764470|ref|YP_003064828.2| integral membrane protein TerC
[Candidatus Liberibacter asiaticus str. psy62]
(523 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
str. psy62]
Length = 523
Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/523 (100%), Positives = 523/523 (100%)
Query: 1 MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR 60
MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR
Sbjct: 1 MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR 60
Query: 61 IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK 120
IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK
Sbjct: 61 IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK 120
Query: 121 HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI 180
HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI
Sbjct: 121 HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI 180
Query: 181 RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE 240
RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE
Sbjct: 181 RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE 240
Query: 241 QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT 300
QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT
Sbjct: 241 QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT 300
Query: 301 LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL 360
LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL
Sbjct: 301 LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL 360
Query: 361 RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI 420
RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI
Sbjct: 361 RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI 420
Query: 421 LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL 480
LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL
Sbjct: 421 LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL 480
Query: 481 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI 523
WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI
Sbjct: 481 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI 523
>gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 320
Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 14/235 (5%)
Query: 286 IISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQG 345
I S+ EK++ ++L IM R I ++ + + G S PV +
Sbjct: 69 IFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN 128
Query: 346 SLDSFIGIVSARDLLRDL------LEEGSMNFKRS----IRKPLVVHENISVLKLMERLR 395
SLD+ G+V RD++ + ++N + S I+ L V ++ V L+ ++
Sbjct: 129 SLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQ 188
Query: 396 KSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLD-ITVGDDGSLTVDGWIDV 454
+S +V+DE+G +G+++ +I+ + D E K I+ D + VD D+
Sbjct: 189 ESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL 248
Query: 455 RYASKLFG--VNLVDEDDRYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEG 507
+K+ G N + + +L G I L +P E+ E+ FEI+ L+
Sbjct: 249 EELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEI-PGFEIVILDA 302
>537021.9.peg.753_1
Length = 1033
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 396 KSSQTFV--MVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSL 446
+ S +FV V Y +LEG ++ NIL+ IA DQ+ I + D +L
Sbjct: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA------DQQPAIAITDTNNL 52
>gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 346
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 28/44 (63%)
Query: 138 ILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIR 181
I+D SLD V+++ + ++F ++ I + + A+ + +++ M++
Sbjct: 246 IIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLK 289
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 444 GSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFILWRLG 484
G+L V G I+V+YA K + +++ + R S FI +G
Sbjct: 902 GALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIG 942
>gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 238
Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 33/141 (23%)
Query: 97 GFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQIVILDL-VFSLDSVVTAIGMV 155
G+ L F G +EL L DG + V LD+ +F + S VTA +
Sbjct: 44 GYHLSFSGGLELARDLISDG------------------KSVFLDMKLFDIGSSVTA--AI 83
Query: 156 QHFSVMAIAVAVSALMMMAVSQPMIRYIS--RHTTVVILCLGFLL-MIGFLLIIEGLHFD 212
+H + M +A+ L + A Q M +S R T + +L + L M F L G D
Sbjct: 84 EHIANMGVAM----LTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKD 139
Query: 213 IP-----KGYLYASIGFSGII 228
I + IG GI+
Sbjct: 140 ISDMVRMRAVQARDIGMGGIV 160
>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 496
Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 493 FTEMNLKFEIIRLEGHNIDRVKVS 516
F E+ + E++R G+N +R+K+S
Sbjct: 269 FNELVVISELVRKSGYNSNRIKIS 292
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 23.9 bits (50), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 379 LVVHENISVLKLMERLRKSSQTFVMVLD 406
L H I + K E+LRK Q+F +V +
Sbjct: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAE 146
>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 389
Score = 23.9 bits (50), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 103 KGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQI 136
+G I L +L GFD + FSP + ++ + +
Sbjct: 210 RGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243
>gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 284
Score = 23.5 bits (49), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 145 LDSVVTAIGMVQHFSVMAI 163
+DS+V+A+G V+ F ++A+
Sbjct: 107 IDSIVSAVGNVRDFKLVAV 125
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.327 0.143 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,384
Number of Sequences: 1233
Number of extensions: 13525
Number of successful extensions: 59
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 14
length of query: 523
length of database: 328,796
effective HSP length: 78
effective length of query: 445
effective length of database: 232,622
effective search space: 103516790
effective search space used: 103516790
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)