BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] (523 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/523 (100%), Positives = 523/523 (100%) Query: 1 MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR 60 MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR Sbjct: 1 MFFSWIYDYYVWIGLATLIALELVLGIDNLIFITLLVEKLPLAQRGKALVFGLTFAMVTR 60 Query: 61 IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK 120 IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK Sbjct: 61 IALLASLSYWIVMLQQPLFFLKGLSFSGRDIVLILGGFFLLFKGTIELHERLEGDGFDKK 120 Query: 121 HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI 180 HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI Sbjct: 121 HKFFSPVSWQVIVLQIVILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMI 180 Query: 181 RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE 240 RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE Sbjct: 181 RYISRHTTVVILCLGFLLMIGFLLIIEGLHFDIPKGYLYASIGFSGIIEFFNQVARRNRE 240 Query: 241 QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT 300 QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT Sbjct: 241 QLMSPSRLRARTADAVLRLLGGKPIQPQGLNVKADVLLPTQHEKHIISDQEKDMVQSVLT 300 Query: 301 LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL 360 LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL Sbjct: 301 LADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLL 360 Query: 361 RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI 420 RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI Sbjct: 361 RDLLEEGSMNFKRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANI 420 Query: 421 LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL 480 LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL Sbjct: 421 LEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFIL 480 Query: 481 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI 523 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI Sbjct: 481 WRLGHLPQEKEIFTEMNLKFEIIRLEGHNIDRVKVSGLQNLSI 523 >gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 14/235 (5%) Query: 286 IISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQG 345 I S+ EK++ ++L IM R I ++ + + G S PV + Sbjct: 69 IFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN 128 Query: 346 SLDSFIGIVSARDLLRDL------LEEGSMNFKRS----IRKPLVVHENISVLKLMERLR 395 SLD+ G+V RD++ + ++N + S I+ L V ++ V L+ ++ Sbjct: 129 SLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQ 188 Query: 396 KSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLD-ITVGDDGSLTVDGWIDV 454 +S +V+DE+G +G+++ +I+ + D E K I+ D + VD D+ Sbjct: 189 ESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL 248 Query: 455 RYASKLFG--VNLVDEDDRYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEG 507 +K+ G N + + +L G I L +P E+ E+ FEI+ L+ Sbjct: 249 EELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEI-PGFEIVILDA 302 >537021.9.peg.753_1 Length = 1033 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%) Query: 396 KSSQTFV--MVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSL 446 + S +FV V Y +LEG ++ NIL+ IA DQ+ I + D +L Sbjct: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA------DQQPAIAITDTNNL 52 >gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 10/44 (22%), Positives = 28/44 (63%) Query: 138 ILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIR 181 I+D SLD V+++ + ++F ++ I + + A+ + +++ M++ Sbjct: 246 IIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLK 289 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 444 GSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFILWRLG 484 G+L V G I+V+YA K + +++ + R S FI +G Sbjct: 902 GALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIG 942 >gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 238 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 33/141 (23%) Query: 97 GFFLLFKGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQIVILDL-VFSLDSVVTAIGMV 155 G+ L F G +EL L DG + V LD+ +F + S VTA + Sbjct: 44 GYHLSFSGGLELARDLISDG------------------KSVFLDMKLFDIGSSVTA--AI 83 Query: 156 QHFSVMAIAVAVSALMMMAVSQPMIRYIS--RHTTVVILCLGFLL-MIGFLLIIEGLHFD 212 +H + M +A+ L + A Q M +S R T + +L + L M F L G D Sbjct: 84 EHIANMGVAM----LTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKD 139 Query: 213 IP-----KGYLYASIGFSGII 228 I + IG GI+ Sbjct: 140 ISDMVRMRAVQARDIGMGGIV 160 >gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 496 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 493 FTEMNLKFEIIRLEGHNIDRVKVS 516 F E+ + E++R G+N +R+K+S Sbjct: 269 FNELVVISELVRKSGYNSNRIKIS 292 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 23.9 bits (50), Expect = 7.1, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 379 LVVHENISVLKLMERLRKSSQTFVMVLD 406 L H I + K E+LRK Q+F +V + Sbjct: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAE 146 >gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter asiaticus str. psy62] Length = 389 Score = 23.9 bits (50), Expect = 7.2, Method: Compositional matrix adjust. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 103 KGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQI 136 +G I L +L GFD + FSP + ++ + + Sbjct: 210 RGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243 >gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 23.5 bits (49), Expect = 9.7, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 16/19 (84%) Query: 145 LDSVVTAIGMVQHFSVMAI 163 +DS+V+A+G V+ F ++A+ Sbjct: 107 IDSIVSAVGNVRDFKLVAV 125 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.143 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,384 Number of Sequences: 1233 Number of extensions: 13525 Number of successful extensions: 59 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 14 length of query: 523 length of database: 328,796 effective HSP length: 78 effective length of query: 445 effective length of database: 232,622 effective search space: 103516790 effective search space used: 103516790 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 40 (20.0 bits)