HHsearch alignment for GI: 255764471 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.63 E-value=3.2e-16 Score=128.28 Aligned_cols=168 Identities=30% Similarity=0.436 Sum_probs=123.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCEEEECC-----------EEEEEEECHHCCCCCCCCC
Q ss_conf 303886403564256788765201211000245--665420231142034-----------0699981711044444300
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS--GITRDSVSISWNWKN-----------HPIEIFDTAGMRKPSRITE 269 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~--GtTrD~i~~~~~~~~-----------~~~~liDTaGirkk~~~~~ 269 (470)
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~- 81 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYD- 81 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHH-
T ss_conf 5058997347766045554454101200102323332000000113455802343431024278986257711355554-
Q ss_pred HHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 01110001210012012059984553212202122320000003576655894422335415556665420133320048
Q gi|255764471|r 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 (470)
Q Consensus 270 ~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T TIGR00231 82 ALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLN 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHC
T ss_conf 45433223445444333333322211100102567787532212741699851336554675401000034555555423
Q ss_pred CCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf 831-1123453334858999999
Q gi|255764471|r 350 DIY-INTISGRTGEGLDDLMVSV 371 (470)
Q Consensus 350 ~~~-i~~iSA~~g~gi~~l~~~i 371 (470)
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 162 GEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred CCCCEEECCHHHHCCHHHHHHHH
T ss_conf 66401111001110045566654