HHsearch alignment for GI: 255764471 and conserved domain: TIGR00491
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.55 E-value=6.9e-15 Score=119.25 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHH-HHHH---------CCCCEEE--ECCE-------EEEEEECHHCCCCCCCCCHHHHH
Q ss_conf 42567887652012110002456-6542---------0231142--0340-------69998171104444430001110
Q gi|255764471|r 214 VGKSTLINRLLGYNRLLTGSQSG-ITRD---------SVSISWN--WKNH-------PIEIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 214 ~GKStl~N~l~~~~r~ivs~~~G-tTrD---------~i~~~~~--~~~~-------~~~liDTaGirkk~~~~~~~E~~ 274 (470)
T Consensus 561 vhnTTLLDkIRks--~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPG----------HeaF 628 (1145)
T TIGR00491 561 VHNTTLLDKIRKS--AVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPG----------HEAF 628 (1145)
T ss_pred EECCCCCCCCCCC--CEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCC----------CHHH
T ss_conf 8514331000334--013247788401006665466898651321211402578658015860786----------2344
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----H-----------HHHHHHHH
Q ss_conf 0012100120120599845532122021223200000035766558944223354-----1-----------55566654
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-----K-----------LNLLQDLR 338 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~-----~-----------~~~~~~~~ 338 (470)
T Consensus 629 t~LRkRGG-AlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~ 707 (1145)
T TIGR00491 629 TNLRKRGG-ALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLD 707 (1145)
T ss_pred HCCCCCCC-HHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 22010010-36301101341026984034899999612898728950330558896454885166665411167886688
Q ss_pred HHCCC-----CCC--------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 20133-----320--------------0488311123453334858999999999998414
Q gi|255764471|r 339 TKAIK-----NLP--------------QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 339 ~~~~~-----~~~--------------~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
T Consensus 708 ~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~ 768 (1145)
T TIGR00491 708 KKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLE 768 (1145)
T ss_pred HHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7789887302211258871225520000113689886656789748999999888889988