HHsearch alignment for GI: 255764471 and conserved domain: TIGR00491

>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.55  E-value=6.9e-15  Score=119.25  Aligned_cols=154  Identities=20%  Similarity=0.278  Sum_probs=107.3

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHH-HHHH---------CCCCEEE--ECCE-------EEEEEECHHCCCCCCCCCHHHHH
Q ss_conf             42567887652012110002456-6542---------0231142--0340-------69998171104444430001110
Q gi|255764471|r  214 VGKSTLINRLLGYNRLLTGSQSG-ITRD---------SVSISWN--WKNH-------PIEIFDTAGMRKPSRITESLEQK  274 (470)
Q Consensus       214 ~GKStl~N~l~~~~r~ivs~~~G-tTrD---------~i~~~~~--~~~~-------~~~liDTaGirkk~~~~~~~E~~  274 (470)
T Consensus       561 vhnTTLLDkIRks--~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPG----------HeaF  628 (1145)
T TIGR00491       561 VHNTTLLDKIRKS--AVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPG----------HEAF  628 (1145)
T ss_pred             EECCCCCCCCCCC--CEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCC----------CHHH
T ss_conf             8514331000334--013247788401006665466898651321211402578658015860786----------2344


Q ss_pred             HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----H-----------HHHHHHHH
Q ss_conf             0012100120120599845532122021223200000035766558944223354-----1-----------55566654
Q gi|255764471|r  275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-----K-----------LNLLQDLR  338 (470)
Q Consensus       275 s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~-----~-----------~~~~~~~~  338 (470)
T Consensus       629 t~LRkRGG-AlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~  707 (1145)
T TIGR00491       629 TNLRKRGG-ALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLD  707 (1145)
T ss_pred             HCCCCCCC-HHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf             22010010-36301101341026984034899999612898728950330558896454885166665411167886688


Q ss_pred             HHCCC-----CCC--------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             20133-----320--------------0488311123453334858999999999998414
Q gi|255764471|r  339 TKAIK-----NLP--------------QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT  380 (470)
Q Consensus       339 ~~~~~-----~~~--------------~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~  380 (470)
T Consensus       708 ~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~  768 (1145)
T TIGR00491       708 KKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLE  768 (1145)
T ss_pred             HHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7789887302211258871225520000113689886656789748999999888889988