HHsearch alignment for GI: 255764471 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.96 E-value=3.3e-28 Score=208.98 Aligned_cols=157 Identities=25% Similarity=0.329 Sum_probs=117.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCC-HHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203-40699981711044444300-0111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITE-SLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~-~~E~~s~~~t 279 (470)
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~Lt~~~-~~~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~--LP~~Li~aF--~sT 262 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAF--RAT 262 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCEEECCCCCCEEECCCCCEEEEEECCCHHHH--CCHHHHHHH--HHH
T ss_conf 99769996678877899999985177-6410343135367320488799976999815005630--886799999--999
Q ss_pred CEEEECCEEEEEECCCCCCCH-HHHH---HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220-2122---320000003576655894422335415556665420133320048831112
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE-KQDL---RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~-~qd~---~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
T Consensus 263 Lee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~--~~~----~~~~~-----~~v~ 331 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI--ERL----EEGYP-----EAVF 331 (351)
T ss_pred HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH--HHH----HHCCC-----CEEE
T ss_conf 999985989999805888478999999999999769999988999967015895778--998----73799-----8799
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 3453334858999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 332 ISA~~g~gi~~L~~~I~~~ 350 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 9689998999999999955