HHsearch alignment for GI: 255764471 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.1e-24 Score=185.19 Aligned_cols=158 Identities=26% Similarity=0.275 Sum_probs=124.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
T Consensus 189 ~p~ValVGYTNAGKSTL~n~Lt~~~~-~~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~LP~~Li~aF~-sTLee~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEV 266 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCEEECCCCCCEEECCCCCEEEEEECCCHHHHCCHHHHHHHH-HHHHHH
T ss_conf 97699966788778999999851776-4103431353673204887999769998150056308867999999-999999
Q ss_pred HHCCEEEEEECCCCCCCHHHH----HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 877989999759887762344----5553321023322220565223012100124553122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH----AITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~----~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
T Consensus 267 ~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~--~~~~~~~~~~v~ISA~~g~gi~~L~ 344 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI--ERLEEGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred HHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH--HHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 85989999805888478999999999999769999988999967015895778--9987379987999689998999999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|255764471|r 157 SVIFKIF 163 (470)
Q Consensus 157 ~~i~~~~ 163 (470)
T Consensus 345 ~~I~~~L 351 (351)
T TIGR03156 345 EAIAERL 351 (351)
T ss_pred HHHHHHC
T ss_conf 9999559