HHsearch alignment for GI: 255764471 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=9.3e-36 Score=259.89 Aligned_cols=154 Identities=24% Similarity=0.303 Sum_probs=117.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC--CC-----CCCCCCHHHH
Q ss_conf 430388640356425678876520121-100024566542023114203406999817110--44-----4443000111
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNR-LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK-----PSRITESLEQ 273 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r-~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi--rk-----k~~~~~~~E~ 273 (470)
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~---~~~~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN---FFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECC---EEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 897899986999888999999868985589708997366023---20104736999777602112788889999999999
Q ss_pred HHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 000121001201205998455321220212232000000357665589442233541555666542013332004-8831
Q gi|255764471|r 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDIY 352 (470)
Q Consensus 274 ~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~-~~~~ 352 (470)
T Consensus 94 ~~-----~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~--~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 94 YL-----RGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSE--RNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HH-----HHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCCCC
T ss_conf 99-----998864302898743779989999999999975998899997813069899--99999999999733668894
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 1123453334858
Q gi|255764471|r 353 INTISGRTGEGLD 365 (470)
Q Consensus 353 i~~iSA~~g~gi~ 365 (470)
T Consensus 167 v~~ISA~~g~GID 179 (179)
T TIGR03598 167 VQLFSSLKKTGIE 179 (179)
T ss_pred EEEEECCCCCCCC
T ss_conf 8999799983879