HHsearch alignment for GI: 255764471 and conserved domain: cd00880

>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00  E-value=7.5e-35  Score=253.78  Aligned_cols=161  Identities=24%  Similarity=0.455  Sum_probs=135.8

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             6403564256788765201211000245665420231142034-069998171104444430001110001210012012
Q gi|255764471|r  208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC  286 (470)
Q Consensus       208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a  286 (470)
T Consensus         1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~----~~~~~~~~~~~~~   76 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR----EREELARRVLERA   76 (163)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHH----HHHHHHHHHHHHC
T ss_conf             919799899999999958996101698998656458999954786599972798522231016----8999999999868


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r  287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD  366 (470)
Q Consensus       287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~  366 (470)
T Consensus        77 D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~  154 (163)
T cd00880          77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEE--EELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHH--HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf             9899998789997556699999999719742788534206787899--99999999998767998599997898979999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|255764471|r  367 LMVSVLEI  374 (470)
Q Consensus       367 l~~~i~~~  374 (470)
T Consensus       155 L~~~i~e~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHHH
T ss_conf             99999951