HHsearch alignment for GI: 255764471 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=7.5e-35 Score=253.78 Aligned_cols=161 Identities=24% Similarity=0.455 Sum_probs=135.8
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 6403564256788765201211000245665420231142034-069998171104444430001110001210012012
Q gi|255764471|r 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~----~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR----EREELARRVLERA 76 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHH----HHHHHHHHHHHHC
T ss_conf 919799899999999958996101698998656458999954786599972798522231016----8999999999868
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 366 (470)
T Consensus 77 D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 154 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEE--EELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHH--HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 9899998789997556699999999719742788534206787899--99999999998767998599997898979999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764471|r 367 LMVSVLEI 374 (470)
Q Consensus 367 l~~~i~~~ 374 (470)
T Consensus 155 L~~~i~e~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHHH
T ss_conf 99999951