HHsearch alignment for GI: 255764471 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.96 E-value=7.1e-30 Score=220.24 Aligned_cols=158 Identities=22% Similarity=0.338 Sum_probs=112.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHH---------------HHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCC
Q ss_conf 388640356425678876520121100024---------------56654202311420340699981711044444300
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQ---------------SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE 269 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~---------------~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~ 269 (470)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPG--------- 71 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPG--------- 71 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCC---------
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998---------
Q ss_pred HHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH--HHHHHHHHHHCCC----
Q ss_conf 0111000121001201205998455321220212232000000357665589442233541--5556665420133----
Q gi|255764471|r 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK--LNLLQDLRTKAIK---- 343 (470)
Q Consensus 270 ~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~--~~~~~~~~~~~~~---- 343 (470)
T Consensus 72 -h~~f~-~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~ 149 (189)
T cd00881 72 -HEDFS-SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred -CHHHH-HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf -18899-9999998646856999987989987899999999976998799998971877562999999999998753210
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----320048831112345333485899999999
Q gi|255764471|r 344 -----NLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 344 -----~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 150 ~~~~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~ 184 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 23211012588775999888678697999999997