HHsearch alignment for GI: 255764471 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=9.3e-16 Score=125.11 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaG----------qe~~~~~~~~- 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG----------QEDYDRLRPL- 68 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEECCCC----------CCCCHHHHHH-
T ss_conf 6999989999869999999973999--99868837887679999999999999986999----------7240678899-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHH--------HCCCCC-CCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555666542--------013332-004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRT--------KAIKNL-PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~--------~~~~~~-~~~ 348 (470)
T Consensus 69 ~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~-~~~~~~~~~~vs~~eg~~~a~~~ 147 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTI-EKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 87406689999867987889999999999999858899979874730131004567-78865146775899999999875
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88311123453334858999999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 148 ~~~~f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99789991878895979999999951