HHsearch alignment for GI: 255764471 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=1.5e-34 Score=251.74 Aligned_cols=156 Identities=26% Similarity=0.261 Sum_probs=67.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998-9989999965884207636899999999999998
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
T Consensus 42 p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p~~lie~~-~~tle~i~ 119 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RSTLEEVA 119 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHH-HHHHHHHH
T ss_conf 879998899998999999994899-6341567764576366899569977999836864467837899999-99999997
Q ss_pred HCCEEEEEECCCCCCCHHH----HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHH
Q ss_conf 7798999975988776234----455533210233222205652230121001245531222201001110222014799
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D----~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~ 157 (470)
T Consensus 120 ~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~-~~~~~~~~~i~ISA~~g~Gid~L~~ 198 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEE-RLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH-HHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 398999999799853667799999999980655576078886704799575899-9970899879998868949999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|255764471|r 158 VIFK 161 (470)
Q Consensus 158 ~i~~ 161 (470)
T Consensus 199 ~I~e 202 (204)
T cd01878 199 AIEE 202 (204)
T ss_pred HHHH
T ss_conf 9995