HHsearch alignment for GI: 255764471 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=4.5e-17 Score=133.98 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=111.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC------CE-----EE----ECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHH
Q ss_conf 8999718988788899998588------50-----10----258985302238999998998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK------KM-----AV----VGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~------~~-----ai----v~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 68 (470)
T Consensus 4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~-----dF 78 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----DY 78 (195)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHH-----HH
T ss_conf 9999960588698999999998866344441120010054666505886144189996088169962689607-----78
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC-CCHHHHCCCHHHHH-------HHHH-HHHCCC
Q ss_conf 99999999999987798999975988776234455533210233222-20565223012100-------1245-531222
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII-IVSNKMDTRIAQRN-------FYEI-YSLDFK 139 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~i-lv~NK~D~~~~~~~-------~~e~-~~lg~~ 139 (470)
T Consensus 79 ~~~~i----~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMI----TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998----63511362689985277874789999999998099962799968778987899999999999999842999
Q ss_pred ----CCEEEHHHCCC----------CCHHHHHHHHHHHHH
Q ss_conf ----20100111022----------201479999998610
Q gi|255764471|r 140 ----EIVEISAEHDL----------GTSELHSVIFKIFKQ 165 (470)
Q Consensus 140 ----~~i~iSA~~g~----------Gi~~L~~~i~~~~~~ 165 (470)
T Consensus 155 ~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~ 194 (195)
T cd01884 155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred CCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 5568299977387535788875536999999999964899