HHsearch alignment for GI: 255764471 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=2.1e-29 Score=217.10 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=122.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE---EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 388640356425678876520121100024566542023114---20340699981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW---NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~---~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPG----------h~~f~~~~~~- 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG----------HEAFTNMRAR- 69 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCC----------CHHHHHHHHH-
T ss_conf 8999948998598999998586750-451698168715399998825887189998998----------1677999999-
Q ss_pred EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH-HHHHHHH-CCCCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212232000000357665589442233541555-6665420-1333200488311123453
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTK-AIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~-~~~~~~~-~~~~~~~~~~~~i~~iSA~ 359 (470)
T Consensus 70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~ 149 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECC
T ss_conf 98626889999864667545899999999876997899998930898798999999999754524552898759999899
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 334858999999999998
Q gi|255764471|r 360 TGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 360 ~g~gi~~l~~~i~~~~~~ 377 (470)
T Consensus 150 tG~gi~~L~~~i~~~a~~ 167 (168)
T cd01887 150 TGEGIDDLLEAILLLAEK 167 (168)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 998999999999999715