HHsearch alignment for GI: 255764471 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84  E-value=8.7e-20  Score=152.27  Aligned_cols=154  Identities=23%  Similarity=0.267  Sum_probs=115.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCEEE---------ECCC------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf             089997189887888999985885010---------2589------8530223899999899899999658842076368
Q gi|255764471|r    3 YTIAIVGAPNVGKSTLFNRLVKKKMAV---------VGNH------PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS   67 (470)
Q Consensus         3 ~~iaivG~pNvGKStL~N~l~~~~~ai---------v~~~------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~   67 (470)
T Consensus         3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~-----d   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA-----D   77 (194)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCH-----H
T ss_conf             78999906898799999999997487630465216861475888872876334589999899889999899847-----7


Q ss_pred             HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHH---H-HHHHCCC--
Q ss_conf             999999999999987798999975988776234455533210233222205652230121--0012---4-5531222--
Q gi|255764471|r   68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFY---E-IYSLDFK--  139 (470)
Q Consensus        68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~---e-~~~lg~~--  139 (470)
T Consensus        78 F~~~~~----~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~  153 (194)
T cd01891          78 FGGEVE----RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             777898----7764344678986537897589999999998729974998856458988899999999999986399933


Q ss_pred             ----CCEEEHHHCC----------CCCHHHHHHHHHHHHH
Q ss_conf             ----2010011102----------2201479999998610
Q gi|255764471|r  140 ----EIVEISAEHD----------LGTSELHSVIFKIFKQ  165 (470)
Q Consensus       140 ----~~i~iSA~~g----------~Gi~~L~~~i~~~~~~  165 (470)
T Consensus       154 ~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~  193 (194)
T cd01891         154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA  193 (194)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             3588578725655335778865646599999999965889