HHsearch alignment for GI: 255764471 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=8.7e-20 Score=152.27 Aligned_cols=154 Identities=23% Similarity=0.267 Sum_probs=115.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEE---------ECCC------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 089997189887888999985885010---------2589------8530223899999899899999658842076368
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAV---------VGNH------PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~ai---------v~~~------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
T Consensus 3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~-----d 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA-----D 77 (194)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCH-----H
T ss_conf 78999906898799999999997487630465216861475888872876334589999899889999899847-----7
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHH---H-HHHHCCC--
Q ss_conf 999999999999987798999975988776234455533210233222205652230121--0012---4-5531222--
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFY---E-IYSLDFK-- 139 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~---e-~~~lg~~-- 139 (470)
T Consensus 78 F~~~~~----~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~ 153 (194)
T cd01891 78 FGGEVE----RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 777898----7764344678986537897589999999998729974998856458988899999999999986399933
Q ss_pred ----CCEEEHHHCC----------CCCHHHHHHHHHHHHH
Q ss_conf ----2010011102----------2201479999998610
Q gi|255764471|r 140 ----EIVEISAEHD----------LGTSELHSVIFKIFKQ 165 (470)
Q Consensus 140 ----~~i~iSA~~g----------~Gi~~L~~~i~~~~~~ 165 (470)
T Consensus 154 ~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~ 193 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3588578725655335778865646599999999965889