HHsearch alignment for GI: 255764471 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=1.9e-16 Score=129.74 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=101.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g----------~e~~~~l~- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGE----------DEVAILLN- 71 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-
T ss_conf 0899999999998899999999649998666567546618999999899999999985565----------32355665-
Q ss_pred CEEEECCEEEEEECCCCCCCHHHH--HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220212--232000000357665589442233541555666542013332004883111234
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQD--LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd--~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
T Consensus 72 ~~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a-~~---~~~~~~~e~S 147 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC-RK---LGLPPPLHFS 147 (169)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH-HH---CCCCCCEEEE
T ss_conf 8875469889999979987899999999997005689818999886554203754677699999-98---3999666998
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 5333485899999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~ 376 (470)
T Consensus 148 Aktg~nv~~~F~~la~~a~ 166 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EECCCCHHHHHHHHHHHHH
T ss_conf 3279898999999999976