HHsearch alignment for GI: 255764471 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=1.3e-37 Score=272.40 Aligned_cols=156 Identities=27% Similarity=0.452 Sum_probs=135.7
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 86403564256788765201211000245665420231142034069998171104444430001110001210012012
Q gi|255764471|r 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 207 ~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~---~~~~~~~~~~~~~~i~~a 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD---EGISKEIREQAELAIEEA 77 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC---CHHHHHHHHHHHHHHHHC
T ss_conf 90489998899999999588753540799935667899999999889998578755566---067899999999999865
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 366 (470)
T Consensus 78 d~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~-~~~--------~~l~~~~~i~iSA~~g~Gid~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEA-AEF--------YSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH-HHH--------HHCCCCCEEEEEEECCCCHHH
T ss_conf 90799998999999899999999998479809999787165864569-999--------965999759999658949999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764471|r 367 LMVSVLEI 374 (470)
Q Consensus 367 l~~~i~~~ 374 (470)
T Consensus 149 L~~~I~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHHH
T ss_conf 99999965