HHsearch alignment for GI: 255764471 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.95 E-value=9.7e-28 Score=205.87 Aligned_cols=155 Identities=24% Similarity=0.319 Sum_probs=115.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g----~~~l~~~r 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRG----RQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH----HHHHHHHH
T ss_conf 59999999999999999997899-54369897875747779998998999996730024633332068----99999987
Q ss_pred CCEEEEEECCCCCCCHHHHH------------------------------------------HHHHHHH-C---------
Q ss_conf 12059984553212202122------------------------------------------3200000-0---------
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQDL------------------------------------------RIVDSVF-N--------- 312 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd~------------------------------------------~i~~~i~-~--------- 312 (470)
T Consensus 77 ~aD~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~ 156 (233)
T cd01896 77 TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred HCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 58999999847982667899999998605110357876257771358678604566666888999999998276764378
Q ss_pred ------------------CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ------------------35766558944223354155566654201333200488311123453334858999999999
Q gi|255764471|r 313 ------------------TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 313 ------------------~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 157 i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee--~~~~----~------~~~~~i~ISA~~g~gld~L~~~I~~~ 224 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE--LDLL----A------RQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred ECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHH--HHHH----H------CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6057888898998735767673799997403699899--9986----4------67985999888898989999999998
Q ss_pred HH
Q ss_conf 99
Q gi|255764471|r 375 NK 376 (470)
Q Consensus 375 ~~ 376 (470)
T Consensus 225 L~ 226 (233)
T cd01896 225 LG 226 (233)
T ss_pred HC
T ss_conf 39