HHsearch alignment for GI: 255764471 and conserved domain: cd01897
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.97 E-value=2e-32 Score=237.44 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=120.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCC-CCHHHHHHCCCCCEEE
Q ss_conf 388640356425678876520121100024566542023114203406999817110444443-0001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~-~~~~E~~s~~~t~~~i 283 (470)
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie~~~~----~~l 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAI----TAL 76 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH----HHH
T ss_conf 7999889998899999999589860-23758723574368999837276872488655674788889999999----999
Q ss_pred EC-CEEEEEECCCCCCC---HHHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 01-20599845532122---0212232000000--357665589442233541555666542013332004883111234
Q gi|255764471|r 284 RT-CETTIVLLDATIPF---EKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 284 ~~-advvi~viDa~~~~---~~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
T Consensus 77 ~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~--~~~~~~-----~~~~~~~vi~IS 149 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL--SEIEEE-----EELEGEEVLKIS 149 (168)
T ss_pred HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHH-----HHCCCCCEEEEE
T ss_conf 8357768999968876784899999999987765258887999947534581007--999999-----970899889998
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 53334858999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~ 374 (470)
T Consensus 150 A~~g~Gi~~L~~~i~el 166 (168)
T cd01897 150 TLTEEGVDEVKNKACEL 166 (168)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 15896999999999996