HHsearch alignment for GI: 255764471 and conserved domain: cd04107
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.3e-15 Score=124.19 Aligned_cols=159 Identities=20% Similarity=0.177 Sum_probs=94.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEEC-CE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 038864035642567887652012110002456654--2023114203-40--699981711044444300011100012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWK-NH--PIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~-~~--~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~-F~~~y~~--Tig~df~~k~i~~~~~~~v~l~iwDtaG----------qe~~~~l~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKA--TIGVDFALKVIEWDPNTVVRLQLWDIAG----------QERFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC--CCCEEEEEEEEEECCCEEEEEEEEECCC----------CCCCCCCH
T ss_conf 979999999978999999998299-9998888--7567789989996798199999986899----------83222003
Q ss_pred CCEEEECCEEEEEECCCCCCC--HHHHHHHHH------HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 100120120599845532122--021223200------000035766558944223354155566654201333200488
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPF--EKQDLRIVD------SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~--~~qd~~i~~------~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
T Consensus 68 -~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~----~~~ 142 (201)
T cd04107 68 -RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----NGF 142 (201)
T ss_pred -HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH----CCC
T ss_conf -755557764799982798899998999999999986213789871899866556411256899999999997----799
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 311123453334858999999999998414
Q gi|255764471|r 351 IYINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 351 ~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
T Consensus 143 ~~~~EtSAktg~nV~e~F~~l~~~i~~~~~ 172 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 809997799994989999999999986653