HHsearch alignment for GI: 255764471 and conserved domain: cd04111
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=6.4e-15 Score=119.48 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=93.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCCCCEEEEC-CE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 3038864035642567887652012110-0024566542023114203-40--699981711044444300011100012
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLL-TGSQSGITRDSVSISWNWK-NH--PIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i-vs~~~GtTrD~i~~~~~~~-~~--~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
T Consensus 2 ~fKivllGd~~VGKTsL~~rf~~~~F~~~~~~Tig--~df~~k~i~i~dg~~v~l~IwDTaGq----------e~~~si- 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--VDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSI- 68 (211)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCCCEEEEEEEECCCC----------CCCCCC-
T ss_conf 79999999999619999999981999998687201--68899899977995999999979886----------345644-
Q ss_pred CCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 10012012059984553212--20212232000000----3576655894422335415556665420133320048831
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
T Consensus 69 ~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~-~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~-----~~A~~~~~~ 142 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWL-EEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-----KLAKDLGMK 142 (211)
T ss_pred HHHHHHHCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHH-----HHHHHHCCE
T ss_conf 287742124468971477779999999999-99999749888538988742312856788999999-----999983997
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-HHHH
Q ss_conf 112345333485899999999-9998
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLE-INKL 377 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~-~~~~ 377 (470)
T Consensus 143 f~EtSAK~g~nV~e~F~~la~~i~~~ 168 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99975999819899999999999999