HHsearch alignment for GI: 255764471 and conserved domain: cd04111

>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59  E-value=6.4e-15  Score=119.48  Aligned_cols=156  Identities=21%  Similarity=0.255  Sum_probs=93.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCCCCEEEEC-CE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf             3038864035642567887652012110-0024566542023114203-40--699981711044444300011100012
Q gi|255764471|r  203 PLRIAVVGRPNVGKSTLINRLLGYNRLL-TGSQSGITRDSVSISWNWK-NH--PIEIFDTAGMRKPSRITESLEQKTVKK  278 (470)
Q Consensus       203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i-vs~~~GtTrD~i~~~~~~~-~~--~~~liDTaGirkk~~~~~~~E~~s~~~  278 (470)
T Consensus         2 ~fKivllGd~~VGKTsL~~rf~~~~F~~~~~~Tig--~df~~k~i~i~dg~~v~l~IwDTaGq----------e~~~si-   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--VDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSI-   68 (211)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCCCEEEEEEEECCCC----------CCCCCC-
T ss_conf             79999999999619999999981999998687201--68899899977995999999979886----------345644-


Q ss_pred             CCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             10012012059984553212--20212232000000----3576655894422335415556665420133320048831
Q gi|255764471|r  279 SMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY  352 (470)
Q Consensus       279 t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~  352 (470)
T Consensus        69 ~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~-~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~-----~~A~~~~~~  142 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWL-EEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-----KLAKDLGMK  142 (211)
T ss_pred             HHHHHHHCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHH-----HHHHHHCCE
T ss_conf             287742124468971477779999999999-99999749888538988742312856788999999-----999983997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHH-HHHH
Q ss_conf             112345333485899999999-9998
Q gi|255764471|r  353 INTISGRTGEGLDDLMVSVLE-INKL  377 (470)
Q Consensus       353 i~~iSA~~g~gi~~l~~~i~~-~~~~  377 (470)
T Consensus       143 f~EtSAK~g~nV~e~F~~la~~i~~~  168 (211)
T cd04111         143 YIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99975999819899999999999999