HHsearch alignment for GI: 255764471 and conserved domain: cd04117

>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65  E-value=4.1e-16  Score=127.54  Aligned_cols=153  Identities=20%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         1 ~KIvllGd~~VGKTsli~r~~~~~f-~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaG----------qe~~~~~~-~~   68 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAG----------QERYQTIT-KQ   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf             9899999499858999999942998-998788720898899999999999999997999----------60236355-88


Q ss_pred             EEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             1201205998455321220--21223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI  356 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  356 (470)
T Consensus        69 y~r~a~~~ilvyDvt~~~Sf~~l~~w~-~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~~~~-----~~a~~~~~~~~et  142 (161)
T cd04117          69 YYRRAQGIFLVYDISSERSYQHIMKWV-SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGN-----KLAKEYGMDFFET  142 (161)
T ss_pred             HHHHHCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHH-----HHHHHCCCEEEEE
T ss_conf             876416889961489889999999999-9999878998649998732787862779999999-----9999869979996


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q ss_conf             453334858999999999
Q gi|255764471|r  357 SGRTGEGLDDLMVSVLEI  374 (470)
Q Consensus       357 SA~~g~gi~~l~~~i~~~  374 (470)
T Consensus       143 SAk~~~nV~e~F~~l~~~  160 (161)
T cd04117         143 SACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCCCCCCHHHHHHHHHHH
T ss_conf             778982989999999964