HHsearch alignment for GI: 255764471 and conserved domain: cd04118
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=7.5e-16 Score=125.74 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=94.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 1 vKivlvGd~~VGKTsLi~r~~~~~-f~~~~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~----------e~~~~l-~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS----------ERYEAM-SR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHH-HH
T ss_conf 989999969987999999998597-998997876305889999999999999999919997----------312355-79
Q ss_pred EEEECCEEEEEECCCCCC--CHHHHHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212--2021223200000--035766558944223354155566654201333200488311123
Q gi|255764471|r 281 QSVRTCETTIVLLDATIP--FEKQDLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~--~~~qd~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 69 ~y~~~a~~~ilvydit~~~Sf~~i~~W~-~~i~~~~~~~~iilVGnK~DL~~~~~~~-r~V~~~e~~~~a~~~~~~~~E~ 146 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWV-KELQNLEEHCKIYLCGTKSDLIEQDRSL-RQVDFHDVQDFADEIKAQHFET 146 (193)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECHHHHHCCCCC-CCCCHHHHHHHHHHCCCEEEEE
T ss_conf 8834774457883069879999899999-9999748999979997746632201666-4468999999999809969998
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 147 SAktg~nV~e~F~~la~~i 165 (193)
T cd04118 147 SSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 3898939899999999999