HHsearch alignment for GI: 255764471 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66 E-value=3.3e-16 Score=128.19 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=98.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~~-~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAG----------TEQFTAMRD-L 68 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf 1999989999889999999971959--88669954206999999999999998645765----------445556789-8
Q ss_pred EEECCEEEEEECCCCCCCHHHHHH-HHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 120120599845532122021223-200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLR-IVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~-i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 69 y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~-~~----~a~~~~~~~~E~ 143 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QA----LARQWGCPFYET 143 (163)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHH-HH----HHHHCCCEEEEE
T ss_conf 8346876999704898899999999999999861888886787623547264078999999-99----999849989997
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
T Consensus 144 SAk~~~nV~e~F~~l~~ 160 (163)
T cd04136 144 SAKSKINVDEVFADLVR 160 (163)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 44878058999999999