HHsearch alignment for GI: 255764471 and conserved domain: cd04136

>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66  E-value=3.3e-16  Score=128.19  Aligned_cols=152  Identities=19%  Similarity=0.247  Sum_probs=98.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus         2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~~-~   68 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAG----------TEQFTAMRD-L   68 (163)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf             1999989999889999999971959--88669954206999999999999998645765----------445556789-8


Q ss_pred             EEECCEEEEEECCCCCCCHHHHHH-HHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             120120599845532122021223-200000----035766558944223354155566654201333200488311123
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFEKQDLR-IVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI  356 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~~qd~~-i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  356 (470)
T Consensus        69 y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~-~~----~a~~~~~~~~E~  143 (163)
T cd04136          69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QA----LARQWGCPFYET  143 (163)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHH-HH----HHHHCCCEEEEE
T ss_conf             8346876999704898899999999999999861888886787623547264078999999-99----999849989997


Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             45333485899999999
Q gi|255764471|r  357 SGRTGEGLDDLMVSVLE  373 (470)
Q Consensus       357 SA~~g~gi~~l~~~i~~  373 (470)
T Consensus       144 SAk~~~nV~e~F~~l~~  160 (163)
T cd04136         144 SAKSKINVDEVFADLVR  160 (163)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             44878058999999999