HHsearch alignment for GI: 255764471 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.68  E-value=2.1e-16  Score=129.52  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=97.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r  205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS  282 (470)
Q Consensus       205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~  282 (470)
T Consensus         3 KIvlvGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~----------e~~~~~~-~~~   69 (180)
T cd04137           3 KIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ----------DEYSILP-QKY   69 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEECCEEEEEEEEECCCC----------CCCCHHH-HHH
T ss_conf             899999899889999999970978--998588124411379999999999999989987----------0100667-999


Q ss_pred             EECCEEEEEECCCCCCCHHHHH--H---HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             2012059984553212202122--3---2000000357665589442233541555666542013332004883111234
Q gi|255764471|r  283 VRTCETTIVLLDATIPFEKQDL--R---IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS  357 (470)
Q Consensus       283 i~~advvi~viDa~~~~~~qd~--~---i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS  357 (470)
T Consensus        70 ~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~-~~a~~----~~~~f~EtS  144 (180)
T cd04137          70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-ELAES----WGAAFLESS  144 (180)
T ss_pred             HHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHH-HHHHH----CCCEEEEEC
T ss_conf             8635578999743887889999999999999758888867977653462440788999999-99998----399899977


Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             53334858999999999
Q gi|255764471|r  358 GRTGEGLDDLMVSVLEI  374 (470)
Q Consensus       358 A~~g~gi~~l~~~i~~~  374 (470)
T Consensus       145 Ak~g~nV~e~F~~l~~~  161 (180)
T cd04137         145 ARENENVEEAFELLIEE  161 (180)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             68891989999999999