HHsearch alignment for GI: 255764471 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=7e-16 Score=125.95 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=99.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~-f-~~~~~pTi~~~~~~~i~i~~~~~~l~iwDtaG----------qe~~~~l~~- 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHS-F-PDYHDPTIEDAYKQQARIDNEPALLDILDTAG----------QAEFTAMRD- 68 (172)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCCCEEEEEEECCEEEEEEEEECCC----------CCCCCCCHH-
T ss_conf 0699999999977999999997098-9-98758842220369999999999999997888----------513574515-
Q ss_pred EEEECCEEEEEECCCCCCCHHHH--HH--HHHHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220212--23--20000-003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQD--LR--IVDSV-FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd--~~--i~~~i-~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
T Consensus 69 ~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~e~~-~----~a~~~~~~f~E 143 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-N----LAREFNCPFFE 143 (172)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHH-H----HHHHCCCEEEE
T ss_conf 564278656887316888899999999999999728899868998504566761888999999-9----99985997999
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 144 tSAk~~~nV~e~F~~l~~~i 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 74788828899999999999