HHsearch alignment for GI: 255764471 and conserved domain: cd04142

>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.65  E-value=1.6e-15  Score=123.55  Aligned_cols=168  Identities=17%  Similarity=0.178  Sum_probs=104.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf             03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r  204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM  280 (470)
Q Consensus       204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~  280 (470)
T Consensus         1 iKivvlG~~gVGKTsli~rf~~~~-F~~~y~p-Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~-~tagqe~~~-~r-~   75 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQE-FPEEYIP-TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMD-PR-F   75 (198)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCCCCC-CCCCHHHHH-HH-H
T ss_conf             989999979989999999997198-8887478-46616789999999999999999587730455-565212355-56-4


Q ss_pred             EEEECCEEEEEECCCCCCCHHHHHH-HHHHHH------CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             0120120599845532122021223-200000------035766558944223354155566654201333200488311
Q gi|255764471|r  281 QSVRTCETTIVLLDATIPFEKQDLR-IVDSVF------NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI  353 (470)
Q Consensus       281 ~~i~~advvi~viDa~~~~~~qd~~-i~~~i~------~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i  353 (470)
T Consensus        76 ~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~----~~~~~f  151 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK----SWKCGY  151 (198)
T ss_pred             HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH----CCCCEE
T ss_conf             4014688899999886778889999999999998514799982899834543100356889999999985----199769


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             123453334858999999999998414
Q gi|255764471|r  354 NTISGRTGEGLDDLMVSVLEINKLWKT  380 (470)
Q Consensus       354 ~~iSA~~g~gi~~l~~~i~~~~~~~~~  380 (470)
T Consensus       152 ~EtSAK~~~nV~~~F~~lvr~i~~~~~  178 (198)
T cd04142         152 LECSAKYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             988788996989999999999986044