HHsearch alignment for GI: 255764471 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=3.3e-16 Score=128.17 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=96.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~~--f~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~----------e~~~~~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQ----------QQADTEQLERS 68 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCC----------CCCCHHHHHHH
T ss_conf 99999989977899999997498--9987599556305799999999999999928985----------01220125543
Q ss_pred EECCEEEEEECCCCCCCHHHHH-HHHHHH---H--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2012059984553212202122-320000---0--035766558944223354155566654201333200488311123
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDL-RIVDSV---F--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~-~i~~~i---~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 69 ~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~-----a~~~~~~f~E~ 143 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEV 143 (165)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH-----HHHCCCEEEEE
T ss_conf 0458789999865888999999999999999846699953998445545210367799999999-----99819989997
Q ss_pred CCCCC-CCHHHHHHHHHH
Q ss_conf 45333-485899999999
Q gi|255764471|r 357 SGRTG-EGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g-~gi~~l~~~i~~ 373 (470)
T Consensus 144 SAk~~~~~V~~~F~~l~~ 161 (165)
T cd04146 144 SAAEDYDGVHSVFHELCR 161 (165)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 520878269999999999