HHsearch alignment for GI: 255764471 and conserved domain: cd04152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=6.4e-17 Score=132.96 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE-EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 430388640356425678876520121100024566542023114-2034069998171104444430001110001210
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~-~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 2 ~~~kIvilG~~~~GKTsil~r~~~~~f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaG----------qe~~r~l-~~ 70 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGG----------QEKLRPL-WK 70 (183)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCC----------CCCCCEE-HH
T ss_conf 679999999999988999999964986776870355789999961678667999997898----------7345100-87
Q ss_pred EEEECCEEEEEECCCCCCCHHHH--HH---HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCC
Q ss_conf 01201205998455321220212--23---2000000357665589442233541555666542013-332004883111
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQD--LR---IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYIN 354 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd--~~---i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 354 (470)
T Consensus 71 ~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~i~ 148 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCEEE
T ss_conf 67467867899996776889999999999997321237962999986677766878--8999999719998666998999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23453334858999999999998
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
T Consensus 149 ~tSA~tG~gI~e~f~~L~~~i~~ 171 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
T ss_conf 72799796989999999999999