HHsearch alignment for GI: 255764471 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71  E-value=5e-17  Score=133.67  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=101.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             43038864035642567887652012110002456654202311420340699981711044444300011100012100
Q gi|255764471|r  202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ  281 (470)
Q Consensus       202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~  281 (470)
T Consensus        14 k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~----~~i~~~~~~~~iwD~~G~----------e~~~~~-~~~   78 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQ----------ESLRSS-WNT   78 (174)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCC----------CCCCCH-HHH
T ss_conf             77999999899998899999997399277167236046----999978889999989998----------656622-677


Q ss_pred             EEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             1201205998455321220--21223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r  282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI  356 (470)
Q Consensus       282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  356 (470)
T Consensus        79 y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~~~~  156 (174)
T cd04153          79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISESLGLTSIRDHTWHIQGC  156 (174)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             7057753799997678889999999999997261016982899995555655789--99999997477763598099996


Q ss_pred             CCCCCCCHHHHHHHHH
Q ss_conf             4533348589999999
Q gi|255764471|r  357 SGRTGEGLDDLMVSVL  372 (470)
Q Consensus       357 SA~~g~gi~~l~~~i~  372 (470)
T Consensus       157 SAktG~Gv~e~f~wLa  172 (174)
T cd04153         157 CALTGEGLPEGLDWIA  172 (174)
T ss_pred             ECCCCCCHHHHHHHHH
T ss_conf             6858919899999986