HHsearch alignment for GI: 255764471 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=5e-17 Score=133.67 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=101.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 43038864035642567887652012110002456654202311420340699981711044444300011100012100
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 14 k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~----~~i~~~~~~~~iwD~~G~----------e~~~~~-~~~ 78 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQ----------ESLRSS-WNT 78 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCC----------CCCCCH-HHH
T ss_conf 77999999899998899999997399277167236046----999978889999989998----------656622-677
Q ss_pred EEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220--21223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
T Consensus 79 y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~~~~ 156 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISESLGLTSIRDHTWHIQGC 156 (174)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7057753799997678889999999999997261016982899995555655789--99999997477763598099996
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 4533348589999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVL 372 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~ 372 (470)
T Consensus 157 SAktG~Gv~e~f~wLa 172 (174)
T cd04153 157 CALTGEGLPEGLDWIA 172 (174)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 6858919899999986