HHsearch alignment for GI: 255764471 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.56 E-value=2.4e-14 Score=115.67 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=101.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~-F-~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAG----------qE~y~~lr~~- 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-Y-PGSYVPTVFENYTASFEIDKRRIELNMWDTSG----------SSYYDNVRPL- 68 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEEECCCC----------CCHHHHHHHH-
T ss_conf 099998989989899999996399-9-99847845877899999999999999976888----------5034556787-
Q ss_pred EEECCEEEEEECCCCCCCHHHH--HHHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHH--------CCCCC-CCC
Q ss_conf 1201205998455321220212--2320000003--576655894422335415556665420--------13332-004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD--LRIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTK--------AIKNL-PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd--~~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~--------~~~~~-~~~ 348 (470)
T Consensus 69 yyr~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~-~el~~~~~~pVt~eeg~~lA~~~ 147 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATL-RELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 50369899999838977889999999999999858999789995874245687889-99985578887899999999976
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 88311123453334-8589999999999
Q gi|255764471|r 349 GDIYINTISGRTGE-GLDDLMVSVLEIN 375 (470)
Q Consensus 349 ~~~~i~~iSA~~g~-gi~~l~~~i~~~~ 375 (470)
T Consensus 148 ga~~y~EcSAk~~~n~V~evF~~a~~~~ 175 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9988998884868749899999999999