Query gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 470
No_of_seqs 287 out of 11012
Neff 7.6
Searched_HMMs 39220
Date Sun May 29 16:44:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764471.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09518 bifunctional cytidyla 100.0 0 0 1040.4 36.1 432 2-465 279-710 (714)
2 PRK00093 engA GTP-binding prot 100.0 0 0 1032.3 38.3 438 2-469 1-438 (438)
3 COG1160 Predicted GTPases [Gen 100.0 0 0 1026.3 36.5 443 1-469 1-444 (444)
4 PRK03003 engA GTP-binding prot 100.0 0 0 1005.4 38.1 435 2-468 38-472 (474)
5 TIGR03594 GTPase_EngA ribosome 100.0 0 0 985.7 36.6 429 4-461 1-429 (429)
6 KOG1191 consensus 100.0 0 0 402.5 -1.2 422 2-462 75-506 (531)
7 cd01895 EngA2 EngA2 subfamily. 100.0 5.6E-45 0 322.1 8.5 174 202-375 1-174 (174)
8 PRK00089 era GTP-binding prote 100.0 2.4E-41 0 297.6 16.1 174 4-178 10-187 (296)
9 cd01894 EngA1 EngA1 subfamily. 100.0 3.6E-41 1.4E-45 296.4 14.3 157 6-163 1-157 (157)
10 COG1159 Era GTPase [General fu 100.0 4.9E-39 1.3E-43 282.0 13.5 177 4-181 8-189 (298)
11 PRK09518 bifunctional cytidyla 100.0 1.7E-38 4.4E-43 278.3 15.1 242 204-459 280-603 (714)
12 PRK00089 era GTP-binding prote 100.0 3E-40 7E-45 290.1 6.0 167 204-378 9-175 (296)
13 COG0486 ThdF Predicted GTPase 100.0 6.5E-40 1.7E-44 287.9 7.4 213 152-378 157-378 (454)
14 TIGR03594 GTPase_EngA ribosome 100.0 2.6E-38 6.7E-43 277.1 15.1 165 2-166 172-346 (429)
15 PRK05291 trmE tRNA modificatio 100.0 1.1E-39 2.8E-44 286.4 7.0 160 196-377 209-368 (445)
16 cd04163 Era Era subfamily. Er 100.0 4.2E-38 1.1E-42 275.7 14.9 161 2-163 3-168 (168)
17 PRK00093 engA GTP-binding prot 100.0 3.4E-38 8.8E-43 276.3 14.5 164 3-166 173-347 (438)
18 cd01895 EngA2 EngA2 subfamily. 100.0 8.6E-38 2.2E-42 273.6 15.1 161 3-163 3-174 (174)
19 PRK03003 engA GTP-binding prot 100.0 3.9E-37 1E-41 269.2 15.6 245 203-459 38-362 (474)
20 pfam02421 FeoB_N Ferrous iron 100.0 1E-36 2.6E-41 266.4 13.3 158 4-166 1-162 (188)
21 PRK05291 trmE tRNA modificatio 100.0 3E-36 7.7E-41 263.2 15.3 152 3-165 217-368 (445)
22 cd01894 EngA1 EngA1 subfamily. 100.0 1.3E-37 3.3E-42 272.4 7.2 156 207-374 1-156 (157)
23 cd04164 trmE TrmE (MnmE, ThdF, 100.0 4.6E-36 1.2E-40 261.9 14.4 155 3-163 2-156 (157)
24 COG1160 Predicted GTPases [Gen 100.0 3.2E-37 8.3E-42 269.7 8.5 160 4-163 180-350 (444)
25 cd04163 Era Era subfamily. Er 100.0 5E-37 1.3E-41 268.5 8.8 165 203-374 3-167 (168)
26 COG0486 ThdF Predicted GTPase 100.0 1.4E-35 3.5E-40 258.7 15.5 160 3-166 218-378 (454)
27 TIGR00450 thdF tRNA modificati 100.0 4.2E-37 1.1E-41 268.9 7.2 172 197-379 219-394 (473)
28 PRK00454 engB GTPase EngB; Rev 100.0 1.2E-35 3.2E-40 259.0 14.3 164 202-375 23-195 (196)
29 cd01897 NOG NOG1 is a nucleola 100.0 1.9E-35 4.8E-40 257.8 14.5 159 3-163 1-167 (168)
30 cd04164 trmE TrmE (MnmE, ThdF, 100.0 1.8E-36 4.5E-41 264.7 8.5 156 203-375 1-156 (157)
31 pfam02421 FeoB_N Ferrous iron 100.0 1.3E-36 3.4E-41 265.6 7.6 180 205-396 1-180 (188)
32 PRK00454 engB GTPase EngB; Rev 100.0 2E-36 5.1E-41 264.4 8.0 159 2-163 24-195 (196)
33 PRK04213 GTP-binding protein; 100.0 9.9E-35 2.5E-39 253.0 13.8 162 2-169 1-189 (195)
34 cd01878 HflX HflX subfamily. 100.0 1.5E-34 3.9E-39 251.7 14.7 156 3-161 42-202 (204)
35 COG1159 Era GTPase [General fu 100.0 4.3E-35 1.1E-39 255.4 8.9 179 202-387 5-183 (298)
36 cd01879 FeoB Ferrous iron tran 100.0 3.5E-34 9E-39 249.2 12.9 153 7-164 1-157 (158)
37 TIGR03598 GTPase_YsxC ribosome 100.0 9.3E-36 2.4E-40 259.9 4.7 154 202-365 17-179 (179)
38 TIGR03598 GTPase_YsxC ribosome 100.0 4.8E-34 1.2E-38 248.3 12.3 148 2-153 18-179 (179)
39 cd01859 MJ1464 MJ1464. This f 100.0 2.4E-34 6.1E-39 250.4 10.5 153 72-261 2-156 (156)
40 cd01876 YihA_EngB The YihA (En 100.0 8.1E-35 2.1E-39 253.6 7.9 164 206-373 2-168 (170)
41 cd00880 Era_like Era (E. coli 100.0 1.1E-33 2.7E-38 246.1 13.1 154 7-162 1-162 (163)
42 cd00880 Era_like Era (E. coli 100.0 7.5E-35 1.9E-39 253.8 6.8 161 208-374 1-162 (163)
43 cd01876 YihA_EngB The YihA (En 100.0 2.2E-33 5.7E-38 243.9 13.9 157 4-163 1-170 (170)
44 cd01856 YlqF YlqF. Proteins o 100.0 1.3E-33 3.4E-38 245.4 11.2 161 71-261 8-170 (171)
45 TIGR00450 thdF tRNA modificati 100.0 5.5E-33 1.4E-37 241.2 13.4 162 3-165 226-392 (473)
46 cd01898 Obg Obg subfamily. Th 100.0 3.4E-33 8.6E-38 242.6 8.8 160 205-374 2-169 (170)
47 cd01879 FeoB Ferrous iron tran 100.0 1.3E-33 3.4E-38 245.4 5.5 158 208-377 1-158 (158)
48 cd01898 Obg Obg subfamily. Th 100.0 2.6E-32 6.6E-37 236.7 12.0 157 4-163 2-170 (170)
49 cd01849 YlqF_related_GTPase Yl 100.0 8.2E-33 2.1E-37 240.1 8.2 151 84-261 1-155 (155)
50 cd01897 NOG NOG1 is a nucleola 100.0 2E-32 5.1E-37 237.4 8.1 158 205-374 2-166 (168)
51 PRK04213 GTP-binding protein; 100.0 6.5E-32 1.7E-36 234.0 8.0 170 205-380 3-188 (195)
52 cd01881 Obg_like The Obg-like 100.0 9.1E-31 2.3E-35 226.3 12.8 153 7-162 1-175 (176)
53 cd01878 HflX HflX subfamily. 100.0 2.2E-31 5.6E-36 230.4 9.4 156 204-374 42-203 (204)
54 cd01858 NGP_1 NGP-1. Autoanti 100.0 5.9E-31 1.5E-35 227.6 9.6 152 75-261 1-157 (157)
55 pfam00009 GTP_EFTU Elongation 100.0 3.4E-31 8.6E-36 229.2 7.7 160 204-374 4-182 (185)
56 KOG1191 consensus 100.0 2.6E-30 6.6E-35 223.2 11.4 164 3-166 269-452 (531)
57 cd04171 SelB SelB subfamily. 100.0 5.9E-31 1.5E-35 227.6 7.5 157 205-374 2-164 (164)
58 cd01881 Obg_like The Obg-like 100.0 4.6E-31 1.2E-35 228.2 6.4 157 208-374 1-175 (176)
59 TIGR00437 feoB ferrous iron tr 100.0 1.2E-29 3E-34 218.8 10.5 153 9-166 1-158 (733)
60 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 6.5E-29 1.7E-33 213.8 13.7 150 3-162 1-164 (168)
61 cd00881 GTP_translation_factor 100.0 7.1E-30 1.8E-34 220.2 8.6 158 205-373 1-184 (189)
62 PRK09554 feoB ferrous iron tra 100.0 4.1E-29 1E-33 215.2 12.4 156 3-163 4-167 (772)
63 cd01896 DRG The developmentall 100.0 6.4E-29 1.6E-33 213.8 13.4 89 4-95 2-90 (233)
64 pfam10662 PduV-EutP Ethanolami 100.0 3.4E-29 8.6E-34 215.7 10.7 138 1-160 1-142 (143)
65 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 2.1E-29 5.3E-34 217.1 9.5 161 205-377 2-167 (168)
66 pfam00009 GTP_EFTU Elongation 100.0 1.3E-28 3.4E-33 211.7 12.4 155 2-165 3-185 (185)
67 COG0370 FeoB Fe2+ transport sy 100.0 2.5E-28 6.4E-33 209.8 12.5 163 1-168 2-168 (653)
68 TIGR03156 GTP_HflX GTP-binding 100.0 3.3E-28 8.5E-33 209.0 12.8 157 202-374 188-350 (351)
69 TIGR03596 GTPase_YlqF ribosome 100.0 1.7E-28 4.4E-33 210.9 11.1 162 72-262 11-174 (276)
70 cd04171 SelB SelB subfamily. 100.0 9.4E-28 2.4E-32 206.0 13.6 149 4-161 2-163 (164)
71 PRK09563 rbgA ribosomal biogen 100.0 3.8E-28 9.6E-33 208.6 10.8 163 71-262 13-177 (282)
72 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 2.7E-28 7E-33 209.6 8.5 133 73-261 2-138 (141)
73 cd01896 DRG The developmentall 99.9 9.7E-28 2.5E-32 205.9 9.4 155 205-376 2-226 (233)
74 cd00881 GTP_translation_factor 99.9 8.9E-27 2.3E-31 199.4 14.2 152 5-165 2-188 (189)
75 PRK11058 putative GTPase HflX; 99.9 3.9E-26 1E-30 195.0 12.6 166 202-380 196-366 (426)
76 pfam10662 PduV-EutP Ethanolami 99.9 2.1E-27 5.3E-32 203.6 4.9 141 205-373 3-143 (143)
77 TIGR00437 feoB ferrous iron tr 99.9 3.5E-27 8.8E-32 202.1 4.4 154 210-377 1-157 (733)
78 COG0218 Predicted GTPase [Gene 99.9 3.5E-25 9E-30 188.6 14.2 161 2-165 24-198 (200)
79 COG2262 HflX GTPases [General 99.9 6.3E-25 1.6E-29 186.9 12.9 164 200-378 189-358 (411)
80 PRK09554 feoB ferrous iron tra 99.9 3.6E-26 9.2E-31 195.3 6.3 163 202-375 2-167 (772)
81 KOG1423 consensus 99.9 1.3E-24 3.2E-29 184.9 12.9 178 198-375 67-270 (379)
82 PRK12299 obgE GTPase ObgE; Rev 99.9 3E-24 7.7E-29 182.3 11.0 165 205-380 160-331 (334)
83 PRK12312 infB translation init 99.9 4E-24 1E-28 181.5 10.8 151 2-162 117-277 (610)
84 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-24 2.9E-29 185.2 7.9 158 2-163 189-351 (351)
85 CHL00189 infB translation init 99.9 7.7E-24 2E-28 179.6 10.9 171 199-381 268-443 (770)
86 cd01890 LepA LepA subfamily. 99.9 1.9E-24 4.8E-29 183.7 7.5 154 205-373 2-174 (179)
87 COG0370 FeoB Fe2+ transport sy 99.9 1.2E-24 3E-29 185.1 5.8 160 204-379 4-167 (653)
88 PRK12297 obgE GTPase ObgE; Rev 99.9 7.6E-23 1.9E-27 172.9 11.8 166 205-383 160-336 (429)
89 COG1084 Predicted GTPase [Gene 99.9 1.8E-22 4.5E-27 170.4 13.5 162 202-374 167-334 (346)
90 cd01890 LepA LepA subfamily. 99.9 8.8E-23 2.2E-27 172.5 11.6 153 4-165 2-178 (179)
91 COG0218 Predicted GTPase [Gene 99.9 4.6E-23 1.2E-27 174.4 9.6 164 203-376 24-197 (200)
92 PRK12299 obgE GTPase ObgE; Rev 99.9 2.9E-23 7.3E-28 175.7 8.6 162 2-167 158-330 (334)
93 PRK12298 obgE GTPase ObgE; Rev 99.9 8.3E-23 2.1E-27 172.6 10.8 166 205-379 161-336 (380)
94 KOG1423 consensus 99.9 4.1E-23 1.1E-27 174.7 8.3 175 4-178 74-285 (379)
95 pfam01926 MMR_HSR1 GTPase of u 99.9 1.1E-22 2.8E-27 171.9 10.2 106 14-120 1-106 (106)
96 PRK12296 obgE GTPase ObgE; Rev 99.9 1.7E-22 4.4E-27 170.5 10.7 223 205-447 161-409 (495)
97 cd01889 SelB_euk SelB subfamil 99.9 4.8E-23 1.2E-27 174.2 7.7 160 204-374 1-184 (192)
98 cd01891 TypA_BipA TypA (tyrosi 99.9 9.6E-23 2.5E-27 172.2 9.2 154 204-369 3-175 (194)
99 TIGR01393 lepA GTP-binding pro 99.9 3.5E-23 8.8E-28 175.2 6.6 153 13-176 14-196 (598)
100 PRK05306 infB translation init 99.9 2.8E-22 7.1E-27 169.1 11.0 167 200-378 338-506 (839)
101 cd04178 Nucleostemin_like Nucl 99.9 8.9E-23 2.3E-27 172.4 8.1 162 84-261 1-172 (172)
102 PRK11058 putative GTPase HflX; 99.9 1.8E-22 4.6E-27 170.3 7.7 164 2-167 197-365 (426)
103 cd01855 YqeH YqeH. YqeH is an 99.9 4.3E-22 1.1E-26 167.8 8.0 140 80-261 32-190 (190)
104 PRK04004 translation initiatio 99.9 1.1E-21 2.8E-26 165.1 9.1 150 2-162 5-215 (592)
105 PRK12298 obgE GTPase ObgE; Rev 99.9 1.4E-21 3.7E-26 164.3 8.3 167 2-171 159-340 (380)
106 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.7E-21 4.5E-26 163.7 8.1 152 203-366 2-173 (195)
107 PRK12297 obgE GTPase ObgE; Rev 99.9 2.9E-21 7.3E-26 162.3 9.0 163 2-168 158-333 (429)
108 pfam01926 MMR_HSR1 GTPase of u 99.8 5.9E-22 1.5E-26 166.9 5.0 106 215-323 1-106 (106)
109 TIGR03597 GTPase_YqeH ribosome 99.8 3.9E-21 1E-25 161.3 8.7 143 79-264 60-217 (360)
110 KOG1489 consensus 99.8 4.6E-21 1.2E-25 160.9 8.2 159 204-374 197-365 (366)
111 PRK12296 obgE GTPase ObgE; Rev 99.8 4.1E-21 1E-25 161.3 7.7 163 2-168 159-344 (495)
112 COG2262 HflX GTPases [General 99.8 6.2E-21 1.6E-25 160.0 8.4 166 2-170 192-362 (411)
113 COG0532 InfB Translation initi 99.8 1.4E-20 3.5E-25 157.7 10.1 151 2-162 5-168 (509)
114 PRK12312 infB translation init 99.8 3E-20 7.7E-25 155.4 11.7 168 200-379 114-282 (610)
115 COG1163 DRG Predicted GTPase [ 99.8 3.6E-21 9.1E-26 161.6 7.0 89 4-95 65-153 (365)
116 COG1161 Predicted GTPases [Gen 99.8 6.1E-21 1.5E-25 160.1 7.9 167 70-265 22-191 (322)
117 cd01891 TypA_BipA TypA (tyrosi 99.8 8.7E-20 2.2E-24 152.3 13.3 154 3-165 3-193 (194)
118 PRK12317 elongation factor 1-a 99.8 7.9E-21 2E-25 159.3 7.4 143 4-155 9-197 (426)
119 KOG1489 consensus 99.8 7.8E-21 2E-25 159.3 6.9 158 2-162 196-365 (366)
120 cd01888 eIF2_gamma eIF2-gamma 99.8 3.9E-20 9.8E-25 154.7 10.2 157 204-373 1-196 (203)
121 PRK13796 GTP-binding protein Y 99.8 2.2E-20 5.5E-25 156.3 8.5 143 78-263 66-224 (367)
122 cd04154 Arl2 Arl2 subfamily. 99.8 3.4E-20 8.6E-25 155.0 8.6 158 199-373 10-172 (173)
123 PRK12736 elongation factor Tu; 99.8 8.1E-20 2.1E-24 152.5 10.5 138 4-150 14-179 (394)
124 pfam00025 Arf ADP-ribosylation 99.8 5.9E-20 1.5E-24 153.4 9.0 158 199-373 10-172 (174)
125 COG1163 DRG Predicted GTPase [ 99.8 1.2E-19 3.1E-24 151.3 10.3 156 204-376 64-289 (365)
126 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.1E-20 5.3E-25 156.4 6.4 151 205-366 1-184 (208)
127 TIGR02729 Obg_CgtA GTP-binding 99.8 2.6E-20 6.6E-25 155.8 6.8 118 206-328 161-296 (296)
128 PRK05433 GTP-binding protein L 99.8 5.6E-20 1.4E-24 153.5 8.5 155 4-167 9-187 (601)
129 PTZ00141 elongation factor 1 a 99.8 4.7E-20 1.2E-24 154.1 7.8 142 4-154 9-201 (443)
130 PRK05506 bifunctional sulfate 99.8 3E-20 7.7E-25 155.4 6.7 142 4-154 9-194 (613)
131 cd01883 EF1_alpha Eukaryotic e 99.8 3.7E-20 9.6E-25 154.7 6.6 175 205-402 1-219 (219)
132 PRK12735 elongation factor Tu; 99.8 4.2E-19 1.1E-23 147.7 12.0 139 4-151 14-180 (396)
133 KOG1145 consensus 99.8 3.9E-19 1E-23 147.9 11.2 168 200-380 150-320 (683)
134 COG1084 Predicted GTPase [Gene 99.8 6.8E-20 1.7E-24 153.0 7.3 161 2-164 168-336 (346)
135 PRK05124 cysN sulfate adenylyl 99.8 4E-20 1E-24 154.6 5.9 143 4-155 29-216 (475)
136 COG0536 Obg Predicted GTPase [ 99.8 2.6E-19 6.7E-24 149.1 10.0 166 205-379 161-336 (369)
137 TIGR02034 CysN sulfate adenyly 99.8 3.4E-20 8.7E-25 155.0 4.8 119 236-365 65-187 (411)
138 PRK00049 elongation factor Tu; 99.8 6.5E-19 1.7E-23 146.4 10.2 138 4-150 14-180 (397)
139 PTZ00336 elongation factor 1-a 99.8 1.6E-19 4.1E-24 150.5 6.8 142 4-154 9-203 (449)
140 CHL00189 infB translation init 99.8 8.1E-19 2.1E-23 145.7 10.4 151 2-162 272-436 (770)
141 cd04155 Arl3 Arl3 subfamily. 99.8 5.2E-19 1.3E-23 147.0 9.2 159 198-373 9-172 (173)
142 cd01889 SelB_euk SelB subfamil 99.8 1.8E-18 4.6E-23 143.4 10.9 154 4-166 2-188 (192)
143 COG0536 Obg Predicted GTPase [ 99.8 7.4E-19 1.9E-23 146.0 8.9 162 3-167 160-336 (369)
144 PRK05306 infB translation init 99.8 3E-18 7.7E-23 141.9 11.7 299 2-325 341-702 (839)
145 PRK04004 translation initiatio 99.8 2.5E-18 6.3E-23 142.5 11.0 162 203-377 5-218 (592)
146 cd04155 Arl3 Arl3 subfamily. 99.8 2.7E-18 6.8E-23 142.3 10.9 147 2-161 14-172 (173)
147 cd04168 TetM_like Tet(M)-like 99.8 5.8E-19 1.5E-23 146.7 7.2 113 5-126 2-131 (237)
148 KOG1424 consensus 99.8 1.3E-18 3.2E-23 144.5 8.6 188 70-262 162-370 (562)
149 cd04154 Arl2 Arl2 subfamily. 99.8 3.5E-18 8.8E-23 141.5 10.7 146 3-161 15-172 (173)
150 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-18 2.8E-23 144.9 8.0 152 205-373 1-157 (158)
151 TIGR02729 Obg_CgtA GTP-binding 99.8 4.4E-19 1.1E-23 147.5 5.7 119 3-124 159-295 (296)
152 PRK04000 translation initiatio 99.8 1.7E-18 4.3E-23 143.6 8.7 153 4-165 10-201 (410)
153 PRK10218 GTP-binding protein; 99.8 1.3E-18 3.4E-23 144.3 7.8 155 3-166 6-197 (607)
154 TIGR00475 selB selenocysteine- 99.8 8.5E-19 2.2E-23 145.6 6.7 153 5-166 3-174 (627)
155 PRK09602 translation-associate 99.8 4.1E-18 1E-22 141.0 9.8 91 1-94 1-115 (396)
156 TIGR01394 TypA_BipA GTP-bindin 99.8 4E-18 1E-22 141.1 9.7 186 5-216 4-237 (609)
157 CHL00071 tufA elongation facto 99.8 1.1E-18 2.7E-23 144.9 6.7 138 4-150 14-179 (409)
158 pfam00025 Arf ADP-ribosylation 99.8 7.7E-18 2E-22 139.2 11.1 147 3-162 15-173 (174)
159 KOG0462 consensus 99.8 2.8E-18 7E-23 142.2 8.7 155 4-167 62-238 (650)
160 TIGR01393 lepA GTP-binding pro 99.8 2E-18 5E-23 143.2 7.4 155 204-373 4-178 (598)
161 PRK00741 prfC peptide chain re 99.8 2.5E-18 6.4E-23 142.4 7.4 116 3-127 11-147 (526)
162 cd04170 EF-G_bact Elongation f 99.8 2.8E-18 7.1E-23 142.1 7.6 114 5-127 2-132 (268)
163 KOG2484 consensus 99.7 5.9E-18 1.5E-22 140.0 7.7 165 76-262 140-308 (435)
164 COG0012 Predicted GTPase, prob 99.7 1.3E-17 3.4E-22 137.5 9.4 91 1-94 1-109 (372)
165 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.5E-17 3.7E-22 137.3 9.3 145 4-161 1-157 (158)
166 pfam00071 Ras Ras family. Incl 99.7 6.1E-18 1.6E-22 139.8 7.2 153 205-374 1-159 (162)
167 cd04169 RF3 RF3 subfamily. Pe 99.7 6.4E-18 1.6E-22 139.7 7.3 115 3-126 3-138 (267)
168 cd01885 EF2 EF2 (for archaea a 99.7 9.3E-18 2.4E-22 138.6 7.9 171 205-401 2-222 (222)
169 PRK10218 GTP-binding protein; 99.7 9.6E-17 2.4E-21 131.8 13.1 176 203-403 5-199 (607)
170 cd01884 EF_Tu EF-Tu subfamily. 99.7 4.5E-17 1.2E-21 134.0 11.2 153 4-165 4-194 (195)
171 TIGR00436 era GTP-binding prot 99.7 2.6E-17 6.6E-22 135.6 9.9 179 4-182 2-188 (278)
172 PRK13351 elongation factor G; 99.7 9.9E-18 2.5E-22 138.4 7.6 114 4-126 10-140 (687)
173 cd01886 EF-G Elongation factor 99.7 9.1E-18 2.3E-22 138.7 7.4 114 5-127 2-132 (270)
174 cd00154 Rab Rab family. Rab G 99.7 1E-17 2.7E-22 138.3 7.7 153 204-373 1-159 (159)
175 cd04159 Arl10_like Arl10-like 99.7 1.2E-17 3.1E-22 137.8 7.9 152 205-373 1-158 (159)
176 cd04167 Snu114p Snu114p subfam 99.7 1.7E-17 4.4E-22 136.8 7.9 150 205-365 2-192 (213)
177 PTZ00133 ADP-ribosylation fact 99.7 5.3E-17 1.4E-21 133.5 10.3 161 201-378 15-180 (182)
178 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.6E-17 6.7E-22 135.6 8.6 154 206-372 2-165 (167)
179 COG2895 CysN GTPases - Sulfate 99.7 9.2E-18 2.3E-22 138.6 6.2 140 4-154 8-193 (431)
180 cd01888 eIF2_gamma eIF2-gamma 99.7 1.2E-16 3E-21 131.2 11.3 154 4-166 2-201 (203)
181 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5E-17 1.3E-21 133.7 9.3 154 202-372 14-172 (174)
182 cd01899 Ygr210 Ygr210 subfamil 99.7 2.2E-17 5.6E-22 136.1 7.3 87 5-94 1-111 (318)
183 PRK05433 GTP-binding protein L 99.7 3.1E-17 7.9E-22 135.1 7.8 157 203-374 7-182 (601)
184 COG0532 InfB Translation initi 99.7 1.4E-16 3.6E-21 130.7 11.0 167 202-380 4-174 (509)
185 TIGR01394 TypA_BipA GTP-bindin 99.7 1.3E-17 3.4E-22 137.6 5.7 181 205-405 3-208 (609)
186 PRK12739 elongation factor G; 99.7 3.9E-17 9.9E-22 134.4 7.9 115 3-126 11-142 (693)
187 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 6.4E-17 1.6E-21 133.0 8.8 163 202-377 2-171 (183)
188 KOG1490 consensus 99.7 1.2E-17 3.1E-22 137.8 5.1 194 203-403 168-371 (620)
189 PRK10512 selenocysteinyl-tRNA- 99.7 3.6E-17 9.2E-22 134.6 7.5 152 4-164 2-166 (615)
190 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.7E-16 4.2E-21 130.2 10.8 149 4-161 1-166 (167)
191 cd04165 GTPBP1_like GTPBP1-lik 99.7 9.6E-17 2.4E-21 131.8 9.5 157 205-372 1-219 (224)
192 cd00876 Ras Ras family. The R 99.7 5E-17 1.3E-21 133.7 7.8 151 205-373 1-158 (160)
193 PRK09601 translation-associate 99.7 1.3E-16 3.3E-21 130.9 9.9 90 1-93 1-107 (364)
194 COG0481 LepA Membrane GTPase L 99.7 3.1E-17 7.9E-22 135.1 6.5 153 6-167 13-189 (603)
195 smart00177 ARF ARF-like small 99.7 1.2E-16 3E-21 131.2 9.3 158 201-375 11-173 (175)
196 smart00173 RAS Ras subfamily o 99.7 1.2E-16 3.1E-21 131.1 9.1 153 204-374 1-160 (164)
197 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.7E-17 1.5E-21 133.3 7.4 151 205-372 1-158 (160)
198 cd01858 NGP_1 NGP-1. Autoanti 99.7 4.2E-17 1.1E-21 134.2 6.7 54 4-60 104-157 (157)
199 pfam00071 Ras Ras family. Incl 99.7 4.8E-16 1.2E-20 127.1 11.5 147 4-163 1-160 (162)
200 cd01893 Miro1 Miro1 subfamily. 99.7 1.2E-16 3.2E-21 131.0 8.5 156 204-375 1-163 (166)
201 cd04137 RheB Rheb (Ras Homolog 99.7 2.1E-16 5.3E-21 129.5 9.6 152 205-374 3-161 (180)
202 cd01892 Miro2 Miro2 subfamily. 99.7 1.9E-16 4.9E-21 129.7 9.4 160 202-376 3-166 (169)
203 PRK00007 elongation factor G; 99.7 8.4E-17 2.1E-21 132.2 7.5 113 4-125 12-142 (693)
204 cd01849 YlqF_related_GTPase Yl 99.7 5.9E-17 1.5E-21 133.2 6.7 55 3-60 101-155 (155)
205 PRK12740 elongation factor G; 99.7 6.4E-17 1.6E-21 133.0 6.8 108 8-124 1-125 (670)
206 PRK00741 prfC peptide chain re 99.7 1.9E-15 4.7E-20 123.1 13.9 114 202-326 9-143 (526)
207 cd04139 RalA_RalB RalA/RalB su 99.7 1.6E-16 4.2E-21 130.2 8.5 153 204-374 1-160 (164)
208 cd04159 Arl10_like Arl10-like 99.7 5.1E-16 1.3E-20 126.9 10.9 144 5-161 2-158 (159)
209 cd01883 EF1_alpha Eukaryotic e 99.7 9.9E-16 2.5E-20 124.9 12.2 141 5-154 2-195 (219)
210 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-15 3.9E-20 123.7 13.1 114 204-328 3-137 (267)
211 cd04121 Rab40 Rab40 subfamily. 99.7 4.1E-16 1E-20 127.5 9.9 160 201-379 4-170 (189)
212 cd01886 EF-G Elongation factor 99.7 1.5E-15 3.9E-20 123.6 12.6 126 205-341 1-144 (270)
213 cd04177 RSR1 RSR1 subgroup. R 99.7 3.7E-16 9.4E-21 127.8 9.4 153 204-373 2-161 (168)
214 cd04120 Rab12 Rab12 subfamily. 99.7 3.1E-16 7.8E-21 128.4 8.9 157 204-377 1-165 (202)
215 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.2E-16 1.1E-20 127.5 9.6 146 3-161 16-173 (174)
216 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.7E-16 2E-20 125.7 10.9 142 4-154 1-184 (208)
217 COG3596 Predicted GTPase [Gene 99.7 3.7E-16 9.4E-21 127.8 9.2 114 7-122 44-159 (296)
218 cd01859 MJ1464 MJ1464. This f 99.7 1.2E-16 3.2E-21 131.0 6.7 90 280-376 7-96 (156)
219 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.8E-16 4.7E-21 129.9 7.5 155 203-375 2-163 (164)
220 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.9E-16 5E-21 129.7 7.7 155 204-373 1-163 (182)
221 cd04132 Rho4_like Rho4-like su 99.7 3E-16 7.6E-21 128.5 8.5 157 205-375 2-166 (187)
222 cd04149 Arf6 Arf6 subfamily. 99.7 4.6E-16 1.2E-20 127.2 9.4 155 201-372 7-166 (168)
223 COG5256 TEF1 Translation elong 99.7 1.1E-16 2.7E-21 131.4 6.0 143 4-155 9-202 (428)
224 PTZ00133 ADP-ribosylation fact 99.7 7.7E-16 2E-20 125.7 10.4 149 3-166 18-180 (182)
225 cd00882 Ras_like_GTPase Ras-li 99.7 9.2E-17 2.3E-21 131.9 5.4 149 208-372 1-156 (157)
226 cd04151 Arl1 Arl1 subfamily. 99.7 4.2E-16 1.1E-20 127.4 8.8 151 205-372 1-156 (158)
227 cd04136 Rap_like Rap-like subf 99.7 3.3E-16 8.3E-21 128.2 8.0 152 204-373 2-160 (163)
228 cd04176 Rap2 Rap2 subgroup. T 99.7 4.4E-16 1.1E-20 127.3 8.7 152 204-373 2-160 (163)
229 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 7E-16 1.8E-20 125.9 9.7 155 203-375 2-163 (172)
230 KOG0410 consensus 99.7 7.7E-16 2E-20 125.7 9.9 158 202-380 177-345 (410)
231 cd04170 EF-G_bact Elongation f 99.7 2.1E-15 5.3E-20 122.8 12.1 126 205-341 1-144 (268)
232 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.7E-16 9.4E-21 127.8 8.2 156 204-375 1-163 (164)
233 cd04168 TetM_like Tet(M)-like 99.7 2E-15 5.2E-20 122.8 11.9 112 205-327 1-129 (237)
234 cd04110 Rab35 Rab35 subfamily. 99.7 2.8E-16 7E-21 128.7 7.4 161 201-379 4-170 (199)
235 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 2E-16 5E-21 129.7 6.7 56 3-61 84-139 (141)
236 cd04150 Arf1_5_like Arf1-Arf5- 99.7 5.9E-16 1.5E-20 126.5 9.1 151 204-371 1-156 (159)
237 cd04124 RabL2 RabL2 subfamily. 99.7 6.6E-16 1.7E-20 126.1 9.3 152 204-377 1-159 (161)
238 cd01856 YlqF YlqF. Proteins o 99.7 2E-16 5E-21 129.7 6.6 93 276-377 10-102 (171)
239 cd01862 Rab7 Rab7 subfamily. 99.7 6.2E-16 1.6E-20 126.3 9.2 158 204-378 1-169 (172)
240 cd04146 RERG_RasL11_like RERG/ 99.7 3.3E-16 8.4E-21 128.2 7.7 152 205-373 1-161 (165)
241 cd04112 Rab26 Rab26 subfamily. 99.7 7.5E-16 1.9E-20 125.8 9.4 154 204-375 1-162 (191)
242 cd04117 Rab15 Rab15 subfamily. 99.7 4.1E-16 1E-20 127.5 8.0 153 204-374 1-160 (161)
243 cd00157 Rho Rho (Ras homology) 99.7 2.1E-16 5.4E-21 129.5 6.6 157 204-373 1-170 (171)
244 cd04125 RabA_like RabA-like su 99.7 5.2E-16 1.3E-20 126.9 8.5 155 204-375 1-161 (188)
245 cd04147 Ras_dva Ras-dva subfam 99.7 3.4E-16 8.6E-21 128.1 7.5 154 205-375 1-162 (198)
246 cd04113 Rab4 Rab4 subfamily. 99.7 2.9E-16 7.4E-21 128.5 7.0 151 204-373 1-159 (161)
247 cd00154 Rab Rab family. Rab G 99.7 3.6E-15 9.2E-20 121.2 12.6 148 3-161 1-159 (159)
248 smart00175 RAB Rab subfamily o 99.6 5.3E-16 1.4E-20 126.8 8.0 153 204-374 1-160 (164)
249 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 9.5E-16 2.4E-20 125.1 9.2 156 203-375 2-163 (166)
250 cd04142 RRP22 RRP22 subfamily. 99.6 1.6E-15 4.1E-20 123.5 10.3 168 204-380 1-178 (198)
251 cd01885 EF2 EF2 (for archaea a 99.6 1.8E-15 4.5E-20 123.3 10.5 153 4-165 2-221 (222)
252 cd01870 RhoA_like RhoA-like su 99.6 6.3E-16 1.6E-20 126.3 8.2 159 204-375 2-174 (175)
253 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.3E-15 3.3E-20 124.2 9.7 159 204-380 1-172 (201)
254 cd04123 Rab21 Rab21 subfamily. 99.6 5.2E-16 1.3E-20 126.8 7.7 151 204-373 1-159 (162)
255 cd00876 Ras Ras family. The R 99.6 5.6E-15 1.4E-19 119.8 13.0 147 4-162 1-159 (160)
256 smart00177 ARF ARF-like small 99.6 2.2E-15 5.7E-20 122.6 10.9 149 3-164 14-174 (175)
257 cd01867 Rab8_Rab10_Rab13_like 99.6 7.9E-16 2E-20 125.6 8.5 155 202-374 2-163 (167)
258 cd04114 Rab30 Rab30 subfamily. 99.6 7.6E-16 1.9E-20 125.7 8.4 155 201-373 5-166 (169)
259 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 6.1E-16 1.5E-20 126.4 7.8 155 205-376 2-165 (170)
260 cd04122 Rab14 Rab14 subfamily. 99.6 9.1E-16 2.3E-20 125.2 8.4 152 203-373 2-161 (166)
261 PTZ00327 eukaryotic translatio 99.6 1.2E-15 3E-20 124.4 9.0 154 4-166 39-238 (460)
262 smart00174 RHO Rho (Ras homolo 99.6 1.1E-15 2.8E-20 124.6 8.7 157 206-375 1-171 (174)
263 cd04126 Rab20 Rab20 subfamily. 99.6 3.3E-15 8.5E-20 121.4 11.1 157 204-375 1-189 (220)
264 cd04175 Rap1 Rap1 subgroup. T 99.6 8.5E-16 2.2E-20 125.4 8.0 152 204-373 2-160 (164)
265 cd04118 Rab24 Rab24 subfamily. 99.6 7.5E-16 1.9E-20 125.7 7.7 158 204-375 1-165 (193)
266 cd01868 Rab11_like Rab11-like. 99.6 6.9E-16 1.8E-20 126.0 7.4 153 202-373 2-162 (165)
267 cd04140 ARHI_like ARHI subfami 99.6 1.2E-15 3.1E-20 124.3 8.6 154 204-375 2-164 (165)
268 cd04116 Rab9 Rab9 subfamily. 99.6 7.8E-16 2E-20 125.6 7.5 155 202-373 4-168 (170)
269 cd04157 Arl6 Arl6 subfamily. 99.6 1.3E-15 3.2E-20 124.2 8.6 148 206-371 2-159 (162)
270 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.1E-15 2.9E-20 124.5 8.3 150 204-373 2-159 (162)
271 cd01875 RhoG RhoG subfamily. 99.6 2.2E-15 5.5E-20 122.7 9.7 159 202-374 2-175 (191)
272 cd01871 Rac1_like Rac1-like su 99.6 9.3E-16 2.4E-20 125.1 7.7 157 204-374 2-173 (174)
273 cd04143 Rhes_like Rhes_like su 99.6 1.9E-15 5E-20 123.0 9.3 156 204-376 1-171 (247)
274 KOG2423 consensus 99.6 9.4E-16 2.4E-20 125.1 7.7 159 70-264 201-365 (572)
275 cd01874 Cdc42 Cdc42 subfamily. 99.6 1E-15 2.6E-20 124.9 7.8 159 204-375 2-174 (175)
276 cd04134 Rho3 Rho3 subfamily. 99.6 2.5E-15 6.4E-20 122.2 9.8 155 205-374 2-172 (189)
277 cd01864 Rab19 Rab19 subfamily. 99.6 1.9E-15 4.9E-20 123.0 9.2 154 202-373 2-163 (165)
278 cd04158 ARD1 ARD1 subfamily. 99.6 2.5E-15 6.4E-20 122.2 9.8 151 205-372 1-157 (169)
279 cd04150 Arf1_5_like Arf1-Arf5- 99.6 3E-15 7.5E-20 121.7 10.1 145 4-161 2-158 (159)
280 cd01865 Rab3 Rab3 subfamily. 99.6 1.7E-15 4.2E-20 123.4 8.7 155 204-375 2-162 (165)
281 TIGR00231 small_GTP small GTP- 99.6 3.2E-16 8.1E-21 128.3 5.0 168 203-371 3-184 (186)
282 cd01860 Rab5_related Rab5-rela 99.6 1.2E-15 3E-20 124.4 7.9 151 204-373 2-160 (163)
283 cd01899 Ygr210 Ygr210 subfamil 99.6 1.6E-15 4E-20 123.6 8.5 86 206-296 1-110 (318)
284 cd01866 Rab2 Rab2 subfamily. 99.6 1.7E-15 4.2E-20 123.4 8.5 153 202-374 3-164 (168)
285 cd04156 ARLTS1 ARLTS1 subfamil 99.6 2.3E-15 5.9E-20 122.5 9.1 145 4-161 1-159 (160)
286 cd04127 Rab27A Rab27a subfamil 99.6 1.5E-15 3.9E-20 123.7 8.1 156 202-375 3-176 (180)
287 cd04139 RalA_RalB RalA/RalB su 99.6 2E-14 5E-19 116.2 13.8 151 3-165 1-163 (164)
288 PTZ00132 GTP-binding nuclear p 99.6 2.7E-15 6.8E-20 122.0 9.2 150 202-373 5-162 (209)
289 KOG1145 consensus 99.6 5.4E-15 1.4E-19 120.0 10.7 152 2-163 153-315 (683)
290 cd04158 ARD1 ARD1 subfamily. 99.6 2.9E-15 7.3E-20 121.8 9.3 151 4-167 1-164 (169)
291 cd04157 Arl6 Arl6 subfamily. 99.6 4.6E-15 1.2E-19 120.4 10.3 144 5-161 2-161 (162)
292 cd00879 Sar1 Sar1 subfamily. 99.6 4.8E-15 1.2E-19 120.3 10.4 153 201-371 17-186 (190)
293 cd04144 Ras2 Ras2 subfamily. 99.6 1.5E-15 3.8E-20 123.8 7.6 156 205-378 1-165 (190)
294 PRK12317 elongation factor 1-a 99.6 1.1E-14 2.9E-19 117.8 12.2 156 201-367 5-197 (426)
295 cd04151 Arl1 Arl1 subfamily. 99.6 3.5E-15 8.9E-20 121.3 9.3 145 4-161 1-157 (158)
296 COG1217 TypA Predicted membran 99.6 3.9E-15 1E-19 120.9 9.6 156 3-167 6-198 (603)
297 TIGR00491 aIF-2 translation in 99.6 6.3E-16 1.6E-20 126.3 5.4 136 13-161 561-761 (1145)
298 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.5E-15 3.8E-20 123.8 7.3 157 204-373 1-171 (173)
299 KOG0462 consensus 99.6 2.3E-15 5.9E-20 122.4 8.3 156 203-373 60-232 (650)
300 cd04106 Rab23_lke Rab23-like s 99.6 2E-15 5.2E-20 122.8 7.7 153 204-373 1-160 (162)
301 cd00882 Ras_like_GTPase Ras-li 99.6 1.1E-14 2.8E-19 117.9 11.2 144 7-160 1-156 (157)
302 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.2E-15 8.2E-20 121.5 8.5 156 203-375 2-168 (170)
303 PRK05506 bifunctional sulfate 99.6 1E-14 2.6E-19 118.2 11.0 156 201-367 5-195 (613)
304 cd00877 Ran Ran (Ras-related n 99.6 2.7E-15 7E-20 122.0 8.1 149 204-374 1-157 (166)
305 PTZ00258 GTP-binding protein; 99.6 4.8E-16 1.2E-20 127.1 4.1 88 3-93 23-127 (392)
306 cd01863 Rab18 Rab18 subfamily. 99.6 1.8E-15 4.5E-20 123.2 6.9 152 204-373 1-159 (161)
307 cd04133 Rop_like Rop subfamily 99.6 2.8E-15 7.2E-20 121.9 7.9 158 204-375 2-172 (176)
308 cd04119 RJL RJL (RabJ-Like) su 99.6 3E-15 7.7E-20 121.7 8.0 153 204-373 1-164 (168)
309 COG0012 Predicted GTPase, prob 99.6 2.2E-15 5.7E-20 122.6 7.3 205 204-420 3-311 (372)
310 cd04135 Tc10 TC10 subfamily. 99.6 2.7E-15 6.8E-20 122.1 7.6 158 204-374 1-172 (174)
311 smart00178 SAR Sar1p-like memb 99.6 2.3E-14 5.9E-19 115.7 12.1 154 201-371 15-180 (184)
312 PRK13351 elongation factor G; 99.6 4.3E-14 1.1E-18 113.9 13.5 114 204-328 9-139 (687)
313 cd01900 YchF YchF subfamily. 99.6 5.2E-15 1.3E-19 120.1 8.8 87 5-94 1-104 (274)
314 cd04149 Arf6 Arf6 subfamily. 99.6 5.1E-15 1.3E-19 120.2 8.7 146 3-161 10-167 (168)
315 cd04111 Rab39 Rab39 subfamily. 99.6 6.4E-15 1.6E-19 119.5 9.1 156 203-377 2-168 (211)
316 TIGR03596 GTPase_YlqF ribosome 99.6 2E-15 5E-20 122.9 6.5 56 4-62 120-175 (276)
317 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 6.8E-15 1.7E-19 119.3 9.2 155 3-166 4-172 (183)
318 cd01892 Miro2 Miro2 subfamily. 99.6 4.3E-14 1.1E-18 113.9 13.3 151 2-163 4-165 (169)
319 smart00173 RAS Ras subfamily o 99.6 2.8E-14 7.2E-19 115.1 12.3 150 3-164 1-162 (164)
320 COG3596 Predicted GTPase [Gene 99.6 3.5E-15 8.8E-20 121.3 7.6 190 200-395 36-241 (296)
321 PRK12289 ribosome-associated G 99.6 1.7E-15 4.4E-20 123.3 5.6 138 79-263 85-235 (351)
322 cd01861 Rab6 Rab6 subfamily. 99.6 4.7E-15 1.2E-19 120.4 7.7 153 204-373 1-159 (161)
323 PRK09563 rbgA ribosomal biogen 99.6 2.7E-15 7E-20 122.0 6.5 56 4-62 123-178 (282)
324 cd04131 Rnd Rnd subfamily. Th 99.6 8.4E-15 2.1E-19 118.7 9.0 158 204-375 2-175 (178)
325 cd04167 Snu114p Snu114p subfam 99.6 2.6E-14 6.6E-19 115.4 11.4 153 4-165 2-212 (213)
326 cd04112 Rab26 Rab26 subfamily. 99.6 3.7E-14 9.4E-19 114.4 12.1 153 3-168 1-167 (191)
327 cd04125 RabA_like RabA-like su 99.6 8.3E-14 2.1E-18 112.0 13.9 151 3-167 1-165 (188)
328 PRK05124 cysN sulfate adenylyl 99.6 2.6E-14 6.6E-19 115.4 11.2 158 199-367 23-216 (475)
329 cd04129 Rho2 Rho2 subfamily. 99.6 1.1E-14 2.7E-19 118.0 9.2 161 204-377 2-174 (187)
330 cd00879 Sar1 Sar1 subfamily. 99.6 9.7E-15 2.5E-19 118.3 8.9 146 3-163 20-190 (190)
331 PRK09601 translation-associate 99.6 1.1E-14 2.8E-19 117.9 9.0 89 204-297 3-108 (364)
332 KOG1490 consensus 99.6 4.9E-15 1.2E-19 120.3 7.2 155 2-158 168-335 (620)
333 cd04148 RGK RGK subfamily. Th 99.6 1.3E-14 3.4E-19 117.4 9.4 155 204-376 1-163 (221)
334 PRK00098 ribosome-associated G 99.6 3.5E-15 8.9E-20 121.3 6.4 135 81-263 79-227 (298)
335 TIGR00475 selB selenocysteine- 99.6 1.8E-14 4.6E-19 116.4 9.9 165 205-380 2-176 (627)
336 KOG2486 consensus 99.6 1.2E-14 3.1E-19 117.6 8.8 169 200-376 133-316 (320)
337 PTZ00336 elongation factor 1-a 99.6 5.5E-14 1.4E-18 113.2 12.2 156 201-367 5-204 (449)
338 PTZ00141 elongation factor 1 a 99.6 6.5E-14 1.7E-18 112.7 12.4 155 201-366 5-201 (443)
339 cd01867 Rab8_Rab10_Rab13_like 99.6 1.4E-13 3.5E-18 110.5 13.8 150 2-165 3-166 (167)
340 PRK12735 elongation factor Tu; 99.6 7.8E-14 2E-18 112.2 12.5 156 198-365 7-182 (396)
341 PRK00049 elongation factor Tu; 99.6 1.1E-13 2.9E-18 111.1 13.3 155 197-363 6-181 (397)
342 TIGR00231 small_GTP small GTP- 99.6 1.1E-14 2.7E-19 118.0 8.1 158 2-159 3-184 (186)
343 PRK12736 elongation factor Tu; 99.6 2.6E-14 6.7E-19 115.3 10.0 154 198-363 7-180 (394)
344 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.4E-14 6E-19 115.7 9.7 158 204-375 2-175 (222)
345 cd04176 Rap2 Rap2 subgroup. T 99.6 9.4E-14 2.4E-18 111.6 12.8 149 3-163 2-162 (163)
346 PRK00007 elongation factor G; 99.6 1.6E-13 4E-18 110.1 13.8 116 202-328 9-142 (693)
347 cd01868 Rab11_like Rab11-like. 99.6 1.1E-13 2.7E-18 111.2 12.9 148 2-163 3-164 (165)
348 PTZ00258 GTP-binding protein; 99.6 3.2E-15 8.2E-20 121.5 5.1 97 195-296 14-127 (392)
349 cd04101 RabL4 RabL4 (Rab-like4 99.6 1E-13 2.6E-18 111.4 12.7 148 4-163 2-163 (164)
350 cd04117 Rab15 Rab15 subfamily. 99.6 6.6E-14 1.7E-18 112.7 11.7 146 3-162 1-160 (161)
351 smart00175 RAB Rab subfamily o 99.6 7.1E-14 1.8E-18 112.4 11.8 148 3-164 1-162 (164)
352 cd04137 RheB Rheb (Ras Homolog 99.6 1E-13 2.6E-18 111.4 12.5 151 3-165 2-164 (180)
353 CHL00071 tufA elongation facto 99.6 1.1E-13 2.7E-18 111.2 12.6 152 200-363 9-180 (409)
354 cd04113 Rab4 Rab4 subfamily. 99.6 4.4E-14 1.1E-18 113.8 10.7 146 3-162 1-160 (161)
355 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.1E-13 2.9E-18 111.0 12.5 150 2-163 2-163 (164)
356 cd04136 Rap_like Rap-like subf 99.6 1.2E-13 3E-18 111.0 12.5 149 3-163 2-162 (163)
357 TIGR00491 aIF-2 translation in 99.6 6.9E-15 1.8E-19 119.2 6.2 154 214-380 561-768 (1145)
358 cd04175 Rap1 Rap1 subgroup. T 99.6 1.6E-13 4E-18 110.1 13.1 149 3-163 2-162 (164)
359 cd00157 Rho Rho (Ras homology) 99.6 6.4E-14 1.6E-18 112.7 11.0 146 3-161 1-170 (171)
360 cd01862 Rab7 Rab7 subfamily. 99.6 2.5E-13 6.4E-18 108.7 14.0 150 3-165 1-168 (172)
361 cd04121 Rab40 Rab40 subfamily. 99.6 9.8E-14 2.5E-18 111.5 11.9 151 2-166 6-169 (189)
362 cd01854 YjeQ_engC YjeQ/EngC. 99.6 9.5E-15 2.4E-19 118.3 6.7 137 80-263 76-225 (287)
363 KOG0458 consensus 99.5 4.7E-14 1.2E-18 113.6 10.2 155 202-367 176-373 (603)
364 cd04110 Rab35 Rab35 subfamily. 99.5 7.2E-14 1.8E-18 112.4 11.1 152 2-167 6-170 (199)
365 cd04116 Rab9 Rab9 subfamily. 99.5 8.7E-14 2.2E-18 111.8 11.2 148 2-162 5-169 (170)
366 cd00877 Ran Ran (Ras-related n 99.5 1.3E-13 3.3E-18 110.7 12.1 151 3-166 1-161 (166)
367 cd04124 RabL2 RabL2 subfamily. 99.5 5.2E-14 1.3E-18 113.3 10.1 146 4-163 2-157 (161)
368 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.3E-13 3.4E-18 110.6 12.1 150 2-165 2-165 (166)
369 cd04123 Rab21 Rab21 subfamily. 99.5 7.2E-14 1.8E-18 112.4 10.6 149 3-163 1-161 (162)
370 cd01860 Rab5_related Rab5-rela 99.5 9.8E-14 2.5E-18 111.5 11.3 148 3-164 2-163 (163)
371 cd04128 Spg1 Spg1p. Spg1p (se 99.5 2.7E-13 6.8E-18 108.6 13.5 154 4-171 2-173 (182)
372 cd01861 Rab6 Rab6 subfamily. 99.5 2.3E-13 5.9E-18 109.0 13.1 146 4-163 2-161 (161)
373 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 3.4E-14 8.8E-19 114.6 8.9 159 204-377 14-189 (232)
374 PRK12288 ribosome-associated G 99.5 9.4E-15 2.4E-19 118.4 6.0 135 81-263 121-271 (344)
375 cd04119 RJL RJL (RabJ-Like) su 99.5 1.7E-13 4.3E-18 109.9 12.1 146 4-163 2-166 (168)
376 cd04177 RSR1 RSR1 subgroup. R 99.5 1E-13 2.5E-18 111.4 10.8 150 3-163 2-163 (168)
377 PRK12740 elongation factor G; 99.5 1.6E-13 4.1E-18 110.0 11.8 108 209-327 1-125 (670)
378 cd01865 Rab3 Rab3 subfamily. 99.5 1.9E-13 4.7E-18 109.6 11.9 150 2-165 1-164 (165)
379 cd04127 Rab27A Rab27a subfamil 99.5 4.4E-13 1.1E-17 107.1 13.7 150 2-165 4-178 (180)
380 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.7E-13 4.4E-18 109.8 11.6 147 3-163 2-161 (162)
381 PRK01889 ribosome-associated G 99.5 2.7E-14 7E-19 115.2 7.4 138 81-263 110-258 (353)
382 cd04118 Rab24 Rab24 subfamily. 99.5 3.9E-13 9.9E-18 107.5 13.2 150 4-166 2-168 (193)
383 cd04144 Ras2 Ras2 subfamily. 99.5 3.3E-13 8.4E-18 107.9 12.8 152 4-167 1-166 (190)
384 PRK04000 translation initiatio 99.5 1.2E-13 3E-18 111.0 10.5 164 200-376 5-200 (410)
385 COG0480 FusA Translation elong 99.5 3E-14 7.7E-19 114.9 7.4 117 2-127 10-144 (697)
386 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 6.7E-14 1.7E-18 112.6 9.2 158 203-375 5-179 (182)
387 COG4108 PrfC Peptide chain rel 99.5 6.9E-14 1.8E-18 112.5 9.2 111 4-123 14-145 (528)
388 cd04161 Arl2l1_Arl13_like Arl2 99.5 8.7E-14 2.2E-18 111.8 9.6 144 4-160 1-165 (167)
389 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 1.8E-13 4.6E-18 109.7 11.2 150 3-166 3-166 (172)
390 cd04114 Rab30 Rab30 subfamily. 99.5 2E-13 5.2E-18 109.4 11.4 148 2-163 7-168 (169)
391 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 2.8E-13 7E-18 108.5 12.1 152 3-167 1-171 (201)
392 cd04132 Rho4_like Rho4-like su 99.5 3.6E-13 9.2E-18 107.7 12.3 151 4-165 2-168 (187)
393 cd01870 RhoA_like RhoA-like su 99.5 2.6E-13 6.7E-18 108.6 11.5 150 3-163 2-174 (175)
394 cd01866 Rab2 Rab2 subfamily. 99.5 1.5E-13 3.9E-18 110.2 10.2 150 2-165 4-167 (168)
395 cd04103 Centaurin_gamma Centau 99.5 6.8E-14 1.7E-18 112.6 8.3 149 204-373 1-156 (158)
396 cd04122 Rab14 Rab14 subfamily. 99.5 9.8E-14 2.5E-18 111.5 8.9 149 2-164 2-164 (166)
397 cd04133 Rop_like Rop subfamily 99.5 3.9E-13 1E-17 107.5 12.0 151 4-165 3-174 (176)
398 cd01864 Rab19 Rab19 subfamily. 99.5 9E-14 2.3E-18 111.8 8.7 148 2-162 3-164 (165)
399 KOG2485 consensus 99.5 9.2E-14 2.3E-18 111.7 8.5 159 76-264 40-209 (335)
400 PTZ00132 GTP-binding nuclear p 99.5 1E-13 2.7E-18 111.3 8.6 150 3-166 7-167 (209)
401 cd01893 Miro1 Miro1 subfamily. 99.5 4E-13 1E-17 107.4 11.6 148 4-163 2-163 (166)
402 COG1217 TypA Predicted membran 99.5 2.4E-13 6E-18 108.9 10.3 192 204-420 6-216 (603)
403 cd04134 Rho3 Rho3 subfamily. 99.5 7.9E-13 2E-17 105.4 13.0 152 4-166 2-176 (189)
404 cd04109 Rab28 Rab28 subfamily. 99.5 9.4E-14 2.4E-18 111.6 8.2 146 4-163 2-165 (215)
405 TIGR00436 era GTP-binding prot 99.5 4.4E-14 1.1E-18 113.8 6.5 174 205-383 2-177 (278)
406 smart00174 RHO Rho (Ras homolo 99.5 2.8E-13 7.2E-18 108.4 10.6 146 5-163 1-171 (174)
407 cd04142 RRP22 RRP22 subfamily. 99.5 8.7E-13 2.2E-17 105.1 13.1 162 4-168 2-178 (198)
408 PRK07560 elongation factor EF- 99.5 2.8E-14 7.2E-19 115.1 5.4 114 3-125 21-153 (730)
409 smart00178 SAR Sar1p-like memb 99.5 1.7E-13 4.4E-18 109.9 9.4 147 3-162 18-183 (184)
410 KOG1144 consensus 99.5 1.1E-13 2.9E-18 111.1 8.5 111 2-122 475-603 (1064)
411 cd04146 RERG_RasL11_like RERG/ 99.5 4.6E-13 1.2E-17 106.9 11.5 149 4-163 1-163 (165)
412 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 3.2E-13 8.2E-18 108.0 10.7 147 4-164 2-165 (170)
413 cd04135 Tc10 TC10 subfamily. 99.5 7.1E-13 1.8E-17 105.7 12.4 150 3-163 1-173 (174)
414 cd04140 ARHI_like ARHI subfami 99.5 2.6E-13 6.7E-18 108.6 10.1 148 3-162 2-163 (165)
415 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 5.9E-13 1.5E-17 106.3 11.8 147 5-164 2-159 (164)
416 cd04120 Rab12 Rab12 subfamily. 99.5 4.6E-13 1.2E-17 107.0 11.2 152 4-168 2-167 (202)
417 PRK10512 selenocysteinyl-tRNA- 99.5 1.1E-12 2.8E-17 104.4 12.9 158 206-376 3-166 (615)
418 cd01863 Rab18 Rab18 subfamily. 99.5 2.2E-13 5.6E-18 109.1 9.3 146 3-162 1-160 (161)
419 cd04147 Ras_dva Ras-dva subfam 99.5 4E-13 1E-17 107.4 10.6 150 4-165 1-164 (198)
420 smart00176 RAN Ran (Ras-relate 99.5 1.2E-13 3E-18 111.0 7.8 169 209-425 1-174 (200)
421 COG1162 Predicted GTPases [Gen 99.5 6.4E-14 1.6E-18 112.7 6.3 137 80-263 77-228 (301)
422 TIGR02034 CysN sulfate adenyly 99.5 1.1E-14 2.8E-19 117.9 2.1 135 8-154 6-189 (411)
423 cd01871 Rac1_like Rac1-like su 99.5 1.3E-12 3.4E-17 103.9 12.6 149 3-162 2-173 (174)
424 cd04148 RGK RGK subfamily. Th 99.5 1.6E-12 4E-17 103.4 12.7 152 3-166 1-165 (221)
425 cd04111 Rab39 Rab39 subfamily. 99.5 8E-13 2E-17 105.4 11.1 152 2-167 2-169 (211)
426 COG0481 LepA Membrane GTPase L 99.5 9.5E-14 2.4E-18 111.6 6.4 155 204-373 10-183 (603)
427 cd04165 GTPBP1_like GTPBP1-lik 99.5 1E-12 2.7E-17 104.6 11.7 148 4-160 1-219 (224)
428 KOG2486 consensus 99.5 4.4E-14 1.1E-18 113.8 4.4 157 2-162 136-314 (320)
429 COG1161 Predicted GTPases [Gen 99.5 8.2E-14 2.1E-18 112.0 5.7 58 3-63 133-190 (322)
430 cd04129 Rho2 Rho2 subfamily. 99.5 7.4E-13 1.9E-17 105.6 10.5 151 3-164 2-173 (187)
431 cd04106 Rab23_lke Rab23-like s 99.5 8.7E-13 2.2E-17 105.1 10.9 145 4-162 2-161 (162)
432 cd04143 Rhes_like Rhes_like su 99.5 7.4E-13 1.9E-17 105.6 10.5 149 3-163 1-170 (247)
433 PRK09602 translation-associate 99.5 4.8E-14 1.2E-18 113.6 4.3 88 203-295 2-113 (396)
434 KOG0092 consensus 99.5 2.2E-13 5.7E-18 109.1 7.5 153 203-374 5-165 (200)
435 TIGR00483 EF-1_alpha translati 99.5 1.3E-13 3.2E-18 110.8 6.2 142 4-154 9-202 (445)
436 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.7E-12 4.3E-17 103.2 11.9 147 4-161 2-171 (173)
437 PRK12739 elongation factor G; 99.4 9.5E-13 2.4E-17 104.8 10.3 115 203-328 10-141 (693)
438 COG5256 TEF1 Translation elong 99.4 4.4E-13 1.1E-17 107.1 8.5 157 201-368 5-203 (428)
439 cd04109 Rab28 Rab28 subfamily. 99.4 2.4E-12 6.1E-17 102.1 12.2 164 204-387 1-175 (215)
440 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4.5E-12 1.2E-16 100.3 13.6 150 2-164 2-169 (170)
441 COG3276 SelB Selenocysteine-sp 99.4 2.9E-13 7.4E-18 108.3 7.3 151 5-164 3-162 (447)
442 cd01875 RhoG RhoG subfamily. 99.4 3.8E-12 9.6E-17 100.8 12.7 150 3-165 4-178 (191)
443 cd01874 Cdc42 Cdc42 subfamily. 99.4 4.3E-12 1.1E-16 100.5 12.5 149 3-162 2-173 (175)
444 cd04131 Rnd Rnd subfamily. Th 99.4 5.3E-12 1.4E-16 99.8 12.9 149 3-163 2-175 (178)
445 PRK07560 elongation factor EF- 99.4 1.6E-12 4E-17 103.4 10.1 113 204-327 21-152 (730)
446 KOG0094 consensus 99.4 6.5E-13 1.7E-17 105.9 8.2 154 204-376 23-185 (221)
447 cd01873 RhoBTB RhoBTB subfamil 99.4 8.7E-13 2.2E-17 105.1 8.6 154 203-374 2-194 (195)
448 pfam00350 Dynamin_N Dynamin fa 99.4 9.3E-13 2.4E-17 104.9 8.6 67 251-324 101-168 (168)
449 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 1.9E-12 4.9E-17 102.8 10.1 153 205-377 1-160 (164)
450 cd04161 Arl2l1_Arl13_like Arl2 99.4 8.2E-13 2.1E-17 105.3 7.9 148 206-371 2-164 (167)
451 KOG0410 consensus 99.4 5.1E-13 1.3E-17 106.7 6.2 155 2-164 178-341 (410)
452 cd04104 p47_IIGP_like p47 (47- 99.4 1.4E-12 3.4E-17 103.8 8.1 160 203-373 1-181 (197)
453 cd04126 Rab20 Rab20 subfamily. 99.4 5.2E-12 1.3E-16 99.9 10.3 147 4-165 2-191 (220)
454 TIGR00487 IF-2 translation ini 99.4 4.8E-12 1.2E-16 100.1 10.1 152 2-163 90-253 (594)
455 KOG1486 consensus 99.4 6.9E-13 1.7E-17 105.8 5.6 88 205-297 64-151 (364)
456 PTZ00327 eukaryotic translatio 99.4 1.3E-11 3.3E-16 97.2 11.7 162 201-375 35-235 (460)
457 KOG1491 consensus 99.4 2E-12 5E-17 102.7 7.3 89 1-94 19-126 (391)
458 COG5257 GCD11 Translation init 99.4 7.1E-12 1.8E-16 99.0 9.7 160 4-172 12-210 (415)
459 pfam00350 Dynamin_N Dynamin fa 99.3 7.1E-13 1.8E-17 105.7 4.4 111 5-121 1-168 (168)
460 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 3.5E-11 9E-16 94.3 12.7 153 1-165 12-189 (232)
461 KOG1144 consensus 99.3 4.2E-12 1.1E-16 100.5 7.6 163 204-378 476-689 (1064)
462 COG3276 SelB Selenocysteine-sp 99.3 1.1E-11 2.8E-16 97.7 9.6 158 205-376 2-162 (447)
463 COG2895 CysN GTPases - Sulfate 99.3 2.7E-12 6.8E-17 101.8 6.5 155 201-366 4-193 (431)
464 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 3.1E-11 8E-16 94.6 11.9 148 3-162 6-178 (182)
465 cd04102 RabL3 RabL3 (Rab-like3 99.3 3.2E-12 8.1E-17 101.3 6.6 157 204-373 1-197 (202)
466 KOG0394 consensus 99.3 9.6E-12 2.4E-16 98.1 8.7 172 201-391 7-192 (210)
467 pfam04548 AIG1 AIG1 family. Ar 99.3 3.9E-11 9.8E-16 94.0 11.7 165 4-170 2-180 (200)
468 smart00176 RAN Ran (Ras-relate 99.3 9.1E-12 2.3E-16 98.2 8.4 145 8-166 1-156 (200)
469 cd04105 SR_beta Signal recogni 99.3 2.7E-11 6.9E-16 95.0 10.5 112 3-126 1-124 (203)
470 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 8.7E-11 2.2E-15 91.6 13.0 149 3-163 2-175 (222)
471 KOG0078 consensus 99.3 8.2E-12 2.1E-16 98.5 7.5 158 199-376 8-174 (207)
472 TIGR00503 prfC peptide chain r 99.3 1.7E-12 4.2E-17 103.2 4.0 111 4-123 13-144 (530)
473 TIGR00092 TIGR00092 GTP-bindin 99.3 2.1E-12 5.3E-17 102.5 4.5 88 1-92 1-108 (390)
474 cd04103 Centaurin_gamma Centau 99.3 5.7E-11 1.4E-15 92.9 11.7 142 4-162 2-157 (158)
475 COG1100 GTPase SAR1 and relate 99.3 9.8E-12 2.5E-16 98.0 7.5 156 204-375 6-184 (219)
476 KOG0084 consensus 99.3 2.8E-11 7.1E-16 94.9 9.6 161 199-378 5-174 (205)
477 TIGR02528 EutP ethanolamine ut 99.3 1.4E-11 3.6E-16 97.0 7.8 135 4-159 2-142 (144)
478 cd04104 p47_IIGP_like p47 (47- 99.3 2.6E-11 6.5E-16 95.2 9.1 154 4-166 3-186 (197)
479 cd01900 YchF YchF subfamily. 99.3 2.1E-12 5.4E-17 102.5 3.1 87 206-297 1-104 (274)
480 COG2229 Predicted GTPase [Gene 99.3 2.1E-11 5.3E-16 95.8 8.1 154 203-373 10-175 (187)
481 KOG1486 consensus 99.3 4.4E-11 1.1E-15 93.6 9.1 89 4-95 64-152 (364)
482 KOG0087 consensus 99.2 2.1E-11 5.3E-16 95.8 7.2 161 198-379 9-180 (222)
483 TIGR02528 EutP ethanolamine ut 99.2 1.1E-11 2.9E-16 97.6 5.6 141 205-371 2-142 (144)
484 KOG1424 consensus 99.2 1E-11 2.6E-16 98.0 5.2 57 3-62 315-371 (562)
485 KOG1491 consensus 99.2 1E-11 2.6E-16 97.9 5.0 90 202-296 19-125 (391)
486 COG0480 FusA Translation elong 99.2 9.6E-11 2.5E-15 91.3 10.0 117 202-329 9-143 (697)
487 KOG0098 consensus 99.2 4.1E-11 1E-15 93.9 7.7 159 202-380 5-173 (216)
488 KOG0448 consensus 99.2 2.3E-11 5.9E-16 95.5 6.3 139 4-148 111-310 (749)
489 TIGR03597 GTPase_YqeH ribosome 99.2 1.3E-11 3.3E-16 97.2 5.0 56 4-62 156-216 (360)
490 COG2229 Predicted GTPase [Gene 99.2 4.3E-10 1.1E-14 87.0 12.0 151 3-162 11-176 (187)
491 pfam09439 SRPRB Signal recogni 99.2 1.5E-10 3.8E-15 90.0 9.7 114 2-126 3-127 (181)
492 KOG0467 consensus 99.2 2.4E-11 6.2E-16 95.3 5.1 111 4-123 11-136 (887)
493 PRK13796 GTP-binding protein Y 99.2 2.8E-11 7E-16 95.0 5.3 56 4-62 164-224 (367)
494 cd01853 Toc34_like Toc34-like 99.2 2.3E-10 6E-15 88.7 9.8 121 3-124 32-162 (249)
495 pfam03308 ArgK ArgK protein. T 99.2 2.2E-10 5.5E-15 89.0 9.6 175 201-396 27-255 (267)
496 COG1100 GTPase SAR1 and relate 99.2 3.8E-10 9.7E-15 87.3 10.6 149 3-166 6-187 (219)
497 COG4108 PrfC Peptide chain rel 99.2 4.9E-10 1.2E-14 86.6 11.0 113 203-326 12-145 (528)
498 KOG1487 consensus 99.2 1.4E-11 3.6E-16 96.9 3.1 47 315-373 232-278 (358)
499 TIGR00484 EF-G translation elo 99.2 1.1E-11 2.8E-16 97.7 2.5 432 5-456 13-572 (705)
500 KOG0395 consensus 99.2 7.2E-11 1.8E-15 92.2 6.6 157 203-377 3-166 (196)
No 1
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=0 Score=1040.35 Aligned_cols=432 Identities=33% Similarity=0.531 Sum_probs=409.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+||||||||||||||||||+|++.|||++.||+|||++++.++|.|++|.||||||+.. ..+.++..|.+|+..|++
T Consensus 279 ~p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~-~~~~~~~~I~~Q~~~Ai~ 357 (714)
T PRK09518 279 VGTVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGGWEA-DAEGIEAAIASQAEIAMT 357 (714)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 8879998999876899998862884168469899883755579999991699997999998-832699999999999999
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHH
Q ss_conf 77989999759887762344555332102332222056522301210012455312222010011102220147999999
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
+||+||||||++.|+++.|++++++||+.+||+++|+||||....+...+|||+|||++|+||||.||.|+++|++.+.+
T Consensus 358 eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e~~~~ef~~LG~~e~~~ISA~Hg~G~~dLld~i~~ 437 (714)
T PRK09518 358 LADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASEYDVAEFWKLGLGEPYSISAMHGRGVADLLDVVLD 437 (714)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 68999999968979897899999999856998899998978876401299999659999689847357898999999996
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 86101234511221000011111122211123343323444303886403564256788765201211000245665420
Q gi|255764471|r 162 IFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 (470)
Q Consensus 162 ~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~ 241 (470)
.+++..... ...+.+++|||+||||||||||+|+|+|++|+|||++||||||+
T Consensus 438 ~l~~~~~~~---------------------------~~~~~~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDs 490 (714)
T PRK09518 438 SLKQHERTS---------------------------GYLSGLRRVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDP 490 (714)
T ss_pred HCCCCCCCC---------------------------CCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECE
T ss_conf 588887543---------------------------43467735888669988789999999689758856889850230
Q ss_pred CCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23114203406999817110444443000111000121001201205998455321220212232000000357665589
Q gi|255764471|r 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 (470)
Q Consensus 242 i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~ 321 (470)
|+..|+|+|+.|.||||||||||+|+.+++|+||+.||+++|++||||++|+||++|+++||++|++++.++|||+|+++
T Consensus 491 Id~~~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~~Iivv 570 (714)
T PRK09518 491 VDEIVNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAGRALVLAF 570 (714)
T ss_pred EEEEEEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 55679999978999986001524432543227999999998865889999986776752899999999998599379999
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44223354155566654201333200488311123453334858999999999998414689789899999999828878
Q gi|255764471|r 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 (470)
Q Consensus 322 NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp 401 (470)
|||||+++.. .+.+..++...++++.|+|++||||++|+|+++|++.+.++|++|++||+|++||+||++++..||||
T Consensus 571 NKWDLv~~~~--~~~~~~~i~~~l~~~~~apiv~iSA~~g~~v~kl~~~i~~~~~~~~~rI~T~~LN~~l~~~~~~~ppP 648 (714)
T PRK09518 571 NKWDLMDEFR--RQRLEREIDTEFDRVMWAERVNISAKTGRHTNRLARAMDKALESWDQRIPTGKLNAFLGKIQAEHPHP 648 (714)
T ss_pred ECHHCCCHHH--HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 6143068668--99999999975636899988999667897889999999999999606398899999999999728999
Q ss_pred CCCCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 7787120699998628797789999258223886689999998889768986448999756878
Q gi|255764471|r 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 (470)
Q Consensus 402 ~~~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr~~~n 465 (470)
..+|+++||||+||++++||||++|||. .++.+|+|||+|+||++|+|.|+||+|.||.++-
T Consensus 649 ~~~gk~~ki~YatQ~~~~PPtFviF~n~--~l~~sY~RyLen~lRe~f~f~G~PIri~~R~rek 710 (714)
T PRK09518 649 LRGGRQPRILFATQASTRPPRFVLFTTG--FLEHGYRRFLERSLREEFGFEGSPIQISVNIREK 710 (714)
T ss_pred CCCCCCEEEEEEECCCCCCCEEEEEECC--CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 7799420389897899999989999699--9994288885888998669977877999962444
No 2
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=0 Score=1032.34 Aligned_cols=438 Identities=41% Similarity=0.698 Sum_probs=422.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
.|+||||||||||||||||+|+|++.|||++.||||||++++.+.|++.+|.|+||||+.....+.+++.|.+|+..|++
T Consensus 1 ~p~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~ 80 (438)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQMREQALLAIE 80 (438)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99899989999878999999868861871598999847158999999928999989798988820799999999999998
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHH
Q ss_conf 77989999759887762344555332102332222056522301210012455312222010011102220147999999
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
+||+|||||||++|+++.|.+++++||+.++|+++|+||||+...+....|||+|||+++++|||.||.|+++|++.+.+
T Consensus 81 ~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~~~ef~~LGf~~~i~iSA~h~~Gi~~L~~~i~~ 160 (438)
T PRK00093 81 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKMEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILE 160 (438)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 58999999837768987899999999973997899997556632034599999836898188853056698999999985
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 86101234511221000011111122211123343323444303886403564256788765201211000245665420
Q gi|255764471|r 162 IFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 (470)
Q Consensus 162 ~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~ 241 (470)
.+++.. .+.+.+++|||+||||||||||+|+|+|++|++||++||||||+
T Consensus 161 ~l~~~~------------------------------~~~~~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~ 210 (438)
T PRK00093 161 LLPEEE------------------------------EEEEDPIKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDS 210 (438)
T ss_pred HCCCCC------------------------------CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 488554------------------------------34455605999558886556788876543332047999851123
Q ss_pred CCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23114203406999817110444443000111000121001201205998455321220212232000000357665589
Q gi|255764471|r 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 (470)
Q Consensus 242 i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~ 321 (470)
|+..++|++++|.|+|||||||++++.+++|+||+.+|+++|++||+|++|+||++|+++||++|++++.+.|||+|+++
T Consensus 211 i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~v 290 (438)
T PRK00093 211 IDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVV 290 (438)
T ss_pred EEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 26799989967999989898765642137889999999999864466999997665884888999999998199669999
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44223354155566654201333200488311123453334858999999999998414689789899999999828878
Q gi|255764471|r 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 (470)
Q Consensus 322 NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp 401 (470)
|||||++++....+++.+++...++++.++|++|+||++|+|+++|++.+.++|++|++||+|++||+||++++++||||
T Consensus 291 NKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g~gi~kl~~~i~~v~~~~~~ri~Ts~LN~~L~~~~~~~pPP 370 (438)
T PRK00093 291 NKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTGQGVDKLFESILEAYESANRRISTSVLNRVLEEAVEAHPPP 370 (438)
T ss_pred ECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 70222566389999999999975612589877998514777999999999999999605088899999999999708998
Q ss_pred CCCCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 77871206999986287977899992582238866899999988897689864489997568789989
Q gi|255764471|r 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 (470)
Q Consensus 402 ~~~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr~~~nP~~~ 469 (470)
+.+|+++|+|||||++++||||++|||+++.+|.+|+|||+|+||++|+|.|+||+|.||+++|||.+
T Consensus 371 ~~~gk~~KikY~tQ~~~~PPtFvif~N~~~~l~~sY~RYL~n~lRe~f~~~GvPIri~fr~~~NPy~~ 438 (438)
T PRK00093 371 LVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFREKKNPYAG 438 (438)
T ss_pred CCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
T ss_conf 77994237999982799998899997885559878999999999986799860189999758999998
No 3
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=0 Score=1026.32 Aligned_cols=443 Identities=40% Similarity=0.697 Sum_probs=425.3
Q ss_pred CC-EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95-08999718988788899998588501025898530223899999899899999658842076368999999999999
Q gi|255764471|r 1 MI-YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 1 m~-~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
|. |+||||||||||||||||||+|++.|||+|+||||||++|+..+|.+++|.+|||||+....++.+++.|.+|++.|
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99778999899987589999887577026760699975577545069838607999789977688128999999999999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHH
Q ss_conf 98779899997598877623445553321023322220565223012100124553122220100111022201479999
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i 159 (470)
+++||++|||||+++|+++.|++++++||+.++|+++|+||+|+.+.+....|||+|||+++++|||.||.|+++|+|.+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHH
T ss_conf 97679999998488789978999999998539988999976667304564899986478982684255356989999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99861012345112210000111111222111233433234443038864035642567887652012110002456654
Q gi|255764471|r 160 FKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 (470)
Q Consensus 160 ~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr 239 (470)
.+.++ .....+. ....+++++||+||||||||||+|+|+|++|+|||++|||||
T Consensus 161 ~~~l~-~~e~~~~-------------------------~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR 214 (444)
T COG1160 161 LELLP-PDEEEEE-------------------------EEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214 (444)
T ss_pred HHHCC-CCCCCCC-------------------------CCCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 97567-7433444-------------------------356775089999278787058887750682598459998622
Q ss_pred HCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 20231142034069998171104444430001110001210012012059984553212202122320000003576655
Q gi|255764471|r 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 (470)
Q Consensus 240 D~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~ii 319 (470)
|+|+..|+++|++|.|+||||+|||.++.+++|+||+.||+++|++||+|++|+||++|+++||++|++++.+.|+++++
T Consensus 215 D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 215 DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 03312589988189999877877466412426887505467678656889999988878368899999999975897499
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89442233541555666542013332004883111234533348589999999999984146897898999999998288
Q gi|255764471|r 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP 399 (470)
Q Consensus 320 v~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~ 399 (470)
++||||+++++...+++++..+...|+|++|+|++||||++|+|+++|++++.++|++|++|++|+.||+||+.++..||
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~p 374 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHP 374 (444)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99753257851667999999999872213677279997047877278899999999986545476899999999997389
Q ss_pred CCCCCCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 7877871206999986287977899992582238866899999988897689864489997568789989
Q gi|255764471|r 400 PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 (470)
Q Consensus 400 pp~~~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr~~~nP~~~ 469 (470)
||..+|+++|+||+||++++||+|++|||+|+.+|+||+|||+|+||+.|+|.|+||+|.||+++|||.+
T Consensus 375 P~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~~~ 444 (444)
T COG1160 375 PPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPYAG 444 (444)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf 9756881688999963678898799993362207367999999989987599988679999347886679
No 4
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=0 Score=1005.40 Aligned_cols=435 Identities=32% Similarity=0.521 Sum_probs=410.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|.||||||||||||||||||+|++.|||++.||||||++++.++|++.+|.|+||||+.. ..+.+++.|.+|++.|++
T Consensus 38 lPiVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~-~~~~~~~~i~~q~~~ai~ 116 (474)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDTGGWEP-DAKGLQALVAEQAEVAMR 116 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 9989998999988899999986886388059899880863689999992899997999999-747899999999999998
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHH
Q ss_conf 77989999759887762344555332102332222056522301210012455312222010011102220147999999
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
+||+||||||+++|+++.|.+++++||+.++|+++|+||||+...+....|||+|||+++++|||.||.|+++|++.+.+
T Consensus 117 eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~~~~~~efy~LGf~~~i~ISA~Hg~Gi~dLld~i~~ 196 (474)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERGEADAAALWSLGLGEPHPVSALHGRGVADLLDAVLA 196 (474)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHH
T ss_conf 69999999968989887899999998753997799867556621023489999757998699602037897999999997
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 86101234511221000011111122211123343323444303886403564256788765201211000245665420
Q gi|255764471|r 162 IFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 (470)
Q Consensus 162 ~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~ 241 (470)
.+++.... ....+.+++|||+||||||||||+|+|+|++|++||++||||||+
T Consensus 197 ~l~~~~~~---------------------------~~~~~~~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDs 249 (474)
T PRK03003 197 ALPEVPEV---------------------------GSAVGGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDP 249 (474)
T ss_pred HCCCCCCC---------------------------CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 48776644---------------------------334577627999808998788999998589756745899851544
Q ss_pred CCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23114203406999817110444443000111000121001201205998455321220212232000000357665589
Q gi|255764471|r 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 (470)
Q Consensus 242 i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~ 321 (470)
|+..++|+|+.|.|+||||||||+++.+.+|+||+.+|+++|++||+|++|+||++|+++||++|++++.++|||+|+++
T Consensus 250 I~~~~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~Iivv 329 (474)
T PRK03003 250 VDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAF 329 (474)
T ss_pred EEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 05899999989999989876635533431458999999999873355799985465874999999999998099579999
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44223354155566654201333200488311123453334858999999999998414689789899999999828878
Q gi|255764471|r 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 (470)
Q Consensus 322 NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp 401 (470)
|||||++++. ...+..++...++++.++|++||||++|+|+++|++.+.++|++|++||+|++||+||++++++||||
T Consensus 330 NKwDLv~~~~--~~~~~~~i~~~l~~~~~~piv~ISA~~g~~i~kL~~~i~~v~~~~~krI~Ts~LN~~L~~a~~~~ppP 407 (474)
T PRK03003 330 NKWDLVDEDR--RYYLEREIDRELAQVRWAPRVNISAKTGRAVQKLVPALETALESWDTRIPTGRLNAWLKELVAAHPPP 407 (474)
T ss_pred ECHHCCCHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7144168678--99999999864554489856999810487989999999999999647398799999999999838998
Q ss_pred CCCCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 7787120699998628797789999258223886689999998889768986448999756878998
Q gi|255764471|r 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 (470)
Q Consensus 402 ~~~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr~~~nP~~ 468 (470)
+.+|+++|||||||++++||||++|||. .+|.+|+|||+|+||+.|+|.|+||+|.||+++-.-.
T Consensus 408 ~~~Gk~~KikY~tQv~~~PPtFvif~n~--~l~~sY~RyLen~lRe~f~~~GvPIri~~R~r~kk~~ 472 (474)
T PRK03003 408 VRGGKQPRILFATQASTRPPTFVLFTTG--FLEAGYRRFLERRLRETFGFEGSPIRINVRVREKRGR 472 (474)
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEECC--CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 6699202589998079999989999699--9977899999999998769855547999961675667
No 5
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=0 Score=985.65 Aligned_cols=429 Identities=40% Similarity=0.692 Sum_probs=409.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
.||||||||||||||||+|+|++.|||++.||||||++++.+.|++.+|.|+||||+.. ..+.+++.|.+|+..|+++|
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~q~~~ai~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 98999999987899999987886176159899887733799999990799998989898-74378999999999999867
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 98999975988776234455533210233222205652230121001245531222201001110222014799999986
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
|+|||||||++|+++.|.+++++||+.++|+++|+||||+...+...+|||+|||+++++|||.||.|+++|++.|.+.+
T Consensus 80 DlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~~~ef~~LG~~~~i~iSA~h~~Gi~~L~~~i~~~l 159 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999985776898679999999987199789999834675314569999983689868874204679999999999658
Q ss_pred HHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCC
Q ss_conf 10123451122100001111112221112334332344430388640356425678876520121100024566542023
Q gi|255764471|r 164 KQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 (470)
Q Consensus 164 ~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~ 243 (470)
++.... ....+++++|||+||||||||||+|+|+|++|++||++||||||+|+
T Consensus 160 ~~~~~~---------------------------~~~~~~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~ 212 (429)
T TIGR03594 160 PEEEEE---------------------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID 212 (429)
T ss_pred CCCCCC---------------------------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 866555---------------------------43455652699974887654677777654333214799986310268
Q ss_pred CEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 11420340699981711044444300011100012100120120599845532122021223200000035766558944
Q gi|255764471|r 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 (470)
Q Consensus 244 ~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK 323 (470)
..++|+|++|.|+||||+||++++.+.+|++|+.+|+++|++||+|++|+||++|+++||++|++++.+.|||+|+++||
T Consensus 213 ~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK 292 (429)
T TIGR03594 213 IPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNK 292 (429)
T ss_pred EEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEH
T ss_conf 79999990899998988763664230477999999999987447799999766588488899999898739976999972
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 22335415556665420133320048831112345333485899999999999841468978989999999982887877
Q gi|255764471|r 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 (470)
Q Consensus 324 ~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~ 403 (470)
|||++++. ..+++..++...++++.++|++|+||++|.|+++|++.+.++|++|++||+|++||+||++++++||||+.
T Consensus 293 ~Dli~~~~-~~~~~~~~i~~~l~~~~~~pI~fiSA~~g~gi~kl~~~i~~~~~~~~~rI~Ts~LN~~L~~~i~k~pPP~~ 371 (429)
T TIGR03594 293 WDLVKDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANKRISTSKLNRVLEEAVAAHPPPLV 371 (429)
T ss_pred HHCCCCHH-HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 23037999-99999999998562368986899734577899999999999999972418889999999999981899877
Q ss_pred CCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 8712069999862879778999925822388668999999888976898644899975
Q gi|255764471|r 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 (470)
Q Consensus 404 ~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr 461 (470)
+|+++|+|||||++++||||++|||+++.+|.+|+|||+|+||++|+|.|+||++.||
T Consensus 372 ~Gkr~KikYatQv~~~PPtF~if~N~~~~i~~sY~ryL~n~~R~~f~~~GvPI~i~fk 429 (429)
T TIGR03594 372 NGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQLREAFGFEGTPIRLEFK 429 (429)
T ss_pred CCCEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9952379999827999988999978866598789999999999876998620899969
No 6
>KOG1191 consensus
Probab=100.00 E-value=0 Score=402.51 Aligned_cols=422 Identities=21% Similarity=0.274 Sum_probs=283.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501025898530223899999899899999658842-0763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~i~~~~~~ai 80 (470)
++.+.+.|+||||||+|+|+ ...+.|.+.+|+|||+.++...++...|+-.||+|+. ++...... ..+.|+
T Consensus 75 ~~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv~-----~~l~a~ 146 (531)
T KOG1191 75 LRSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVVV-----GVLTAL 146 (531)
T ss_pred CCCCCCCCCCCCCCCCCCCH---HHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCHH-----HHHHHH
T ss_conf 02132578875450101485---5512246888742213341003588223433258899834760013-----677776
Q ss_pred H---HCCEEEEEECCCCCCCHHHHHHHHHHHCC--CCCCCCCHHHHCCCHH-HHHHHHHHHHCCC-CCEEEHHHCCCCCH
Q ss_conf 8---77989999759887762344555332102--3322220565223012-1001245531222-20100111022201
Q gi|255764471|r 81 N---EAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMDTRIA-QRNFYEIYSLDFK-EIVEISAEHDLGTS 153 (470)
Q Consensus 81 ~---~aD~il~vvD~~~g~~~~D~~i~~~lr~~--~~~~ilv~NK~D~~~~-~~~~~e~~~lg~~-~~i~iSA~~g~Gi~ 153 (470)
. ..++ -..+..+.....+.+.-.+|.+. -..+|.+.++...... ++...++|.++|+ ..+.|++..+.+.-
T Consensus 147 ~~sg~~~i--r~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~ 224 (531)
T KOG1191 147 GASGIPGI--RLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFGWRKILIEALAGLEAR 224 (531)
T ss_pred HHCCCCCC--CCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 54167786--4358234543434415312555248234421102766544465413316776653899999987322024
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 479999998610123451122100001111-1122211123343323444303886403564256788765201211000
Q gi|255764471|r 154 ELHSVIFKIFKQKYPNHPLEMIENNKRNEE-SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 (470)
Q Consensus 154 ~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee-~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs 232 (470)
-.+..-..... .+..+......+ ...-..+.......+....++.|||+|+||||||||+|+|+.++|+|||
T Consensus 225 idf~e~~~l~~-------~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS 297 (531)
T KOG1191 225 IDFEEERPLEE-------IETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS 297 (531)
T ss_pred ECHHHCCCHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 14433075554-------03002036788889999988875346777635772899769987788999887507744767
Q ss_pred HHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf 24566542023114203406999817110444443000111000121001201205998455321220212232000000
Q gi|255764471|r 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 (470)
Q Consensus 233 ~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~ 312 (470)
++||||||+|+..|+.+|.++.|+||||||+ +..+.+|+.++.|+.++++.|||+++|+||.+..+++|..+++.+..
T Consensus 298 pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~ 375 (531)
T KOG1191 298 PVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILET 375 (531)
T ss_pred CCCCCCHHHHEEEEECCCEEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 8999641001227630875899973413100--26870677768999988765477999963300333253289999887
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 35766558944223354155566654201333200488311123453334858999999999998414689789899999
Q gi|255764471|r 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQ 392 (470)
Q Consensus 313 ~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~ 392 (470)
.++.+.+.+|||- .........+.++...++.+.+.|+++.|| +|.+.....-.+-..+++|..+..|+.||.|..
T Consensus 376 ~~~g~~~~~~~~~---~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191 376 EGVGLVVIVNKME---KQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred HCCCEEEEECCCC---CCCEEEEECHHHCCCCCCCCCCCCEECCCC-CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 4255589704443---462378861022157664456774002353-357666337886412004489999999999987
Q ss_pred HHHHHCC-CCCCCCCEEEEEEEEECCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 9998288-787787120699998628797789999258223886689999998889768986448999756
Q gi|255764471|r 393 KTQLQNP-PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 (470)
Q Consensus 393 ~~~~~~~-pp~~~g~~~ki~y~~Q~~~~Pp~f~if~n~~~~~~~~y~ryl~n~~r~~f~~~g~pi~i~fr~ 462 (470)
..+..|. ||...+++.+.+|.+|... .+|.+|+.+++++.++|.|.|||+..+.
T Consensus 452 ~~~~~~s~~~t~~~~r~~~~~r~~~~~----------------~l~~~~~~k~~~~D~~la~~~lR~a~~~ 506 (531)
T KOG1191 452 LVVSPHSAPPTLSQKRIKELLRTCAAP----------------ELERRFLAKQLKEDIDLAGEPLRLAQRS 506 (531)
T ss_pred HHCCCCCCCHHHCCHHHHHHHHHHHHH----------------HHHHHHHHHHCCCCHHHCCCHHHHHHHH
T ss_conf 516877884101233577887765435----------------6788987651044622202017999853
No 7
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=5.6e-45 Score=322.11 Aligned_cols=174 Identities=33% Similarity=0.664 Sum_probs=165.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 43038864035642567887652012110002456654202311420340699981711044444300011100012100
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++++||++|+||||||||+|+|+|+++++||++||||||++...+++++.+|.|+||||++++.+..+.+|++++.+++.
T Consensus 1 ~~~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899999899998999999983898444349999157332899999998899985788421344210688999999999
Q ss_pred EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122320000003576655894422335415556665420133320048831112345333
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g 361 (470)
++++||++++|+||+++++++|+++++++.+.++|+++|+||||+++++....+.+.+++...++++.+.|+++|||++|
T Consensus 81 ~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g 160 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 99842865899758989988999999999985998699985675267647789999999998734168992899974479
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 48589999999999
Q gi|255764471|r 362 EGLDDLMVSVLEIN 375 (470)
Q Consensus 362 ~gi~~l~~~i~~~~ 375 (470)
.|+++|+++|.++|
T Consensus 161 ~Gi~~L~~~I~ei~ 174 (174)
T cd01895 161 QGVDKLFDAIDEVY 174 (174)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 89999999999869
No 8
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=100.00 E-value=2.4e-41 Score=297.61 Aligned_cols=174 Identities=35% Similarity=0.501 Sum_probs=157.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
.|||||+||||||||+|+|+|+++||||+.||||||++.+.+++++.++.|+||||+.. +...+++.+..++..++++|
T Consensus 10 ~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~-~~~~l~~~~~~~~~~ai~~a 88 (296)
T PRK00089 10 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK-PKRALNRAMNKAAWSSLKDV 88 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHC
T ss_conf 99999899988899999996896176149599872838999997997999998998667-46778789999999999759
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHHHH-HCCCCCEEEHHHCCCCCHHHHHHH
Q ss_conf 98999975988776234455533210233222205652230121001---24553-122220100111022201479999
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEIYS-LDFKEIVEISAEHDLGTSELHSVI 159 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~~~-lg~~~~i~iSA~~g~Gi~~L~~~i 159 (470)
|+++||+|++.++++.|+.+++.+++.++|+++|+||+|+.+.+... .++.+ .+|.++++|||++|.|+++|++.+
T Consensus 89 Dlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~k~~l~~~~~~l~~~~~f~~if~iSA~~~~gi~~L~~~l 168 (296)
T PRK00089 89 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDLI 168 (296)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99999985788989889999998887499889995478842898899999999853797659999677888989999999
Q ss_pred HHHHHHCCCCCCHHHHHCC
Q ss_conf 9986101234511221000
Q gi|255764471|r 160 FKIFKQKYPNHPLEMIENN 178 (470)
Q Consensus 160 ~~~~~~~~~~~~~e~~e~~ 178 (470)
.+.+|+.+..++.+...+.
T Consensus 169 ~~~lp~~~~~y~~d~~Td~ 187 (296)
T PRK00089 169 AKYLPEGPPLYPEDQITDR 187 (296)
T ss_pred HHHCCCCCCCCCCCCCCCC
T ss_conf 9867988656873014578
No 9
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=3.6e-41 Score=296.35 Aligned_cols=157 Identities=47% Similarity=0.781 Sum_probs=148.2
Q ss_pred EEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 99718988788899998588501025898530223899999899899999658842076368999999999999987798
Q gi|255764471|r 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHL 85 (470)
Q Consensus 6 aivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~ 85 (470)
||+|+||||||||||+|+|++.|+||++||||||.+++.+++++.++.|+||||+... .+.++..|.++++.++++||+
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~-~~~~~~~~~~~~~~~i~~ad~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD-DEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCE
T ss_conf 9048999889999999958875354079993566789999999988999857875556-606789999999999986590
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 999975988776234455533210233222205652230121001245531222201001110222014799999986
Q gi|255764471|r 86 ILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 86 il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
++||+|++.++++.|.+++++|++.++|+++|+||+|..+.+....+++++|++++++|||++|.|+++|++.|.+.+
T Consensus 80 il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~~~~~~l~~~~~i~iSA~~g~Gid~L~~~I~~~L 157 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 799998999999899999999998479809999787165864569999965999759999658949999999999659
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=4.9e-39 Score=281.97 Aligned_cols=177 Identities=33% Similarity=0.489 Sum_probs=160.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
-||||||||||||||.|+|+|.+.||||+.|+|||.++.|.++.++.|++|+||||+.. +...+.+.|.+.+..++.++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~-pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHK-PKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHHHCCC
T ss_conf 99998699876899998985682575159853114421479986984499984898887-65178899999999872457
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH---HHHHH--HHCCCCCEEEHHHCCCCCHHHHHH
Q ss_conf 9899997598877623445553321023322220565223012100---12455--312222010011102220147999
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN---FYEIY--SLDFKEIVEISAEHDLGTSELHSV 158 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~---~~e~~--~lg~~~~i~iSA~~g~Gi~~L~~~ 158 (470)
|++|||||+.++..+.|+.+++.|++.+.|+++++||+|....+.. ..+++ .+.|.+++||||.+|.|++.|.+.
T Consensus 87 Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~ 166 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEI 166 (298)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 59999986665689107999997764389869999840257847789999999985088301799510156788999999
Q ss_pred HHHHHHHCCCCCCHHHHHCCCCC
Q ss_conf 99986101234511221000011
Q gi|255764471|r 159 IFKIFKQKYPNHPLEMIENNKRN 181 (470)
Q Consensus 159 i~~~~~~~~~~~~~e~~e~~~~~ 181 (470)
+.+.+++.+..+|.+...+....
T Consensus 167 i~~~Lpeg~~~yp~d~itD~~~r 189 (298)
T COG1159 167 IKEYLPEGPWYYPEDQITDRPER 189 (298)
T ss_pred HHHHCCCCCCCCCHHHCCCCHHH
T ss_conf 99858888884885651587088
No 11
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-38 Score=278.31 Aligned_cols=242 Identities=24% Similarity=0.316 Sum_probs=180.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 03886403564256788765201211000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
..||||||||||||||||+|+|...+||++.||+|||.++...+|+|++|.++||+|+--. .++++.....++..||
T Consensus 280 p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~~---~~~~~~~I~~Q~~~Ai 356 (714)
T PRK09518 280 GTVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGGWEAD---AEGIEAAIASQAEIAM 356 (714)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC---CHHHHHHHHHHHHHHH
T ss_conf 8799989998768999988628841684698998837555799999916999979999988---3269999999999999
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01205998455321220212232000000357665589442233541555666542013332004883111234533348
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~g 363 (470)
++||+++||+|+..|++..|..+++++.+.+||+++|+||+|....+.. ...|..+.+-.+++|||.+|.|
T Consensus 357 ~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e~~---------~~ef~~LG~~e~~~ISA~Hg~G 427 (714)
T PRK09518 357 TLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASEYD---------VAEFWKLGLGEPYSISAMHGRG 427 (714)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH---------HHHHHHCCCCCCEEEECCCCCC
T ss_conf 9689999999689798978999999998569988999989788764012---------9999965999968984735789
Q ss_pred HHHHHHHHHHHHHHHHCCC-----------------C-HHHHHHHHHHHHHH-CCCC-----------CCCCCE------
Q ss_conf 5899999999999841468-----------------9-78989999999982-8878-----------778712------
Q gi|255764471|r 364 LDDLMVSVLEINKLWKTRI-----------------T-TSYLNSWLQKTQLQ-NPPP-----------TIFNRY------ 407 (470)
Q Consensus 364 i~~l~~~i~~~~~~~~~ri-----------------~-T~~LN~~l~~~~~~-~~pp-----------~~~g~~------ 407 (470)
+.+|++.+.+.+....... . .+.+|.+|.+--.- .+.| ..+|+.
T Consensus 428 ~~dLld~i~~~l~~~~~~~~~~~~~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDT 507 (714)
T PRK09518 428 VADLLDVVLDSLKQHERTSGYLSGLRRVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDT 507 (714)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEEC
T ss_conf 89999999965888875434346773588866998878999999968975885688985023055679999978999986
Q ss_pred ------EEEEE-----EE--------------------E--------------CCCCCCEEEEEECCHHHCCHHHHHHHH
Q ss_conf ------06999-----98--------------------6--------------287977899992582238866899999
Q gi|255764471|r 408 ------NRLKY-----IT--------------------Q--------------IQSSPPSFLIFCTFPNKIPESYKRYLI 442 (470)
Q Consensus 408 ------~ki~y-----~~--------------------Q--------------~~~~Pp~f~if~n~~~~~~~~y~ryl~ 442 (470)
-|+.. .. + -.-+| +++-+|+-+.+++..+..++
T Consensus 508 AGiRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~--~IivvNKWDLv~~~~~~~~~ 585 (714)
T PRK09518 508 AGIRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAGRA--LVLAFNKWDLMDEFRRQRLE 585 (714)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--EEEEEECHHCCCHHHHHHHH
T ss_conf 0015244325432279999999988658899999867767528999999999985993--79999614306866899999
Q ss_pred HHHHHHCC-CCCCEEEEE
Q ss_conf 98889768-986448999
Q gi|255764471|r 443 NRLRINFS-LSGIPIRMC 459 (470)
Q Consensus 443 n~~r~~f~-~~g~pi~i~ 459 (470)
+.++..|. +...|+-..
T Consensus 586 ~~i~~~l~~~~~apiv~i 603 (714)
T PRK09518 586 REIDTEFDRVMWAERVNI 603 (714)
T ss_pred HHHHHHCCCCCCCCEEEE
T ss_conf 999975636899988999
No 12
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=100.00 E-value=3e-40 Score=290.14 Aligned_cols=167 Identities=27% Similarity=0.341 Sum_probs=144.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 03886403564256788765201211000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
.-|||+|+||||||||+|+|+|+++|+||+.||||||++...+++++.+|.|+||||+.++. ..++++....++.++
T Consensus 9 G~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~---~~l~~~~~~~~~~ai 85 (296)
T PRK00089 9 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWSSL 85 (296)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCH---HHHHHHHHHHHHHHH
T ss_conf 99999989998889999999689617614959987283899999799799999899866746---778789999999999
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01205998455321220212232000000357665589442233541555666542013332004883111234533348
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~g 363 (470)
+.||++++|+|++++++++|..+++.+.+.++|+++|+|||||++++. ..+....+.+.+ .+..+++|||++|.|
T Consensus 86 ~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~k~~--l~~~~~~l~~~~---~f~~if~iSA~~~~g 160 (296)
T PRK00089 86 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVDKEE--LLPLLEELSELM---DFAEIVPISALKGDN 160 (296)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH--HHHHHHHHHHHC---CCCEEEEEECCCCCC
T ss_conf 759999999857889898899999988874998899954788428988--999999998537---976599996778889
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999999984
Q gi|255764471|r 364 LDDLMVSVLEINKLW 378 (470)
Q Consensus 364 i~~l~~~i~~~~~~~ 378 (470)
++.|++.+.+.....
T Consensus 161 i~~L~~~l~~~lp~~ 175 (296)
T PRK00089 161 VDELLDLIAKYLPEG 175 (296)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 899999999867988
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=287.91 Aligned_cols=213 Identities=27% Similarity=0.429 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHH--HHCCCCCCHHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 014799999986--101234511221000011111-------12221112334332344430388640356425678876
Q gi|255764471|r 152 TSELHSVIFKIF--KQKYPNHPLEMIENNKRNEES-------PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 (470)
Q Consensus 152 i~~L~~~i~~~~--~~~~~~~~~e~~e~~~~~ee~-------~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~ 222 (470)
++.+.+.+.+.+ -+...++|.+..+......-. .................++++++|+|+||||||||+|+
T Consensus 157 i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNa 236 (454)
T COG0486 157 INELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNA 236 (454)
T ss_pred HHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999999999988448677775456601478999999999999999997444213664586499987998867999998
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHH
Q ss_conf 52012110002456654202311420340699981711044444300011100012100120120599845532122021
Q gi|255764471|r 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 (470)
Q Consensus 223 l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~q 302 (470)
|++++|+||+|+||||||.++..++.+|.+++++|||||| ..++.+|+.++.||++++++||++++|+|++++++++
T Consensus 237 L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR---et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~ 313 (454)
T COG0486 237 LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR---ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKE 313 (454)
T ss_pred HHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH
T ss_conf 8667866742899974103789999898899998567766---6734899999999999998599899997088777601
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2232000000357665589442233541555666542013332004883111234533348589999999999984
Q gi|255764471|r 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 303 d~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
|..+.. ....++|+++++||.||..+.... .. ......+++.+||++|.|++.|.+++...+..-
T Consensus 314 d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~--~~--------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 314 DLALIE-LLPKKKPIIVVLNKADLVSKIELE--SE--------KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHH-HCCCCCCEEEEEECHHCCCCCCCC--HH--------HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 177887-243689779999602115643210--12--------026788269998257657999999999998630
No 14
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=2.6e-38 Score=277.09 Aligned_cols=165 Identities=35% Similarity=0.420 Sum_probs=142.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501025898530223899999899899999658842076--368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK--NCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~i~~~~~~a 79 (470)
.+.||||||||||||||||+|+|++++|||+.||||||.++..++|++.+|.|+||||+.... .+.++.....+++.+
T Consensus 172 ~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTLKA 251 (429)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 52699974887654677777654333214799986310268799999908999989887636642304779999999999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHH--------HHHHCCCCCEEEHHHCCCC
Q ss_conf 98779899997598877623445553321023322220565223012100124--------5531222201001110222
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE--------IYSLDFKEIVEISAEHDLG 151 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e--------~~~lg~~~~i~iSA~~g~G 151 (470)
+++||+++||+||.+|++.+|..+++++.+.++|+++|+||+|+.+......+ +..+..-+++++||.+|.|
T Consensus 252 i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~g~g 331 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQG 331 (429)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 87447799999766588488899999898739976999972230379999999999999856236898689973457789
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 014799999986101
Q gi|255764471|r 152 TSELHSVIFKIFKQK 166 (470)
Q Consensus 152 i~~L~~~i~~~~~~~ 166 (470)
+..|++.+...+...
T Consensus 332 i~kl~~~i~~~~~~~ 346 (429)
T TIGR03594 332 VDKLLDAIDEVYENA 346 (429)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999997
No 15
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=1.1e-39 Score=286.36 Aligned_cols=160 Identities=30% Similarity=0.569 Sum_probs=139.7
Q ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHH
Q ss_conf 33234443038864035642567887652012110002456654202311420340699981711044444300011100
Q gi|255764471|r 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 (470)
Q Consensus 196 ~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s 275 (470)
......++++|+|+|+||||||||+|+|+|++|+|||++||||||.|+..+.++|.++.|+||||||+ ..+.+|+.+
T Consensus 209 ~g~~l~~G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~---t~d~IE~~G 285 (445)
T PRK05291 209 QGELLREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE---TEDEVEKIG 285 (445)
T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCC---CCCHHHHHH
T ss_conf 41786359869988999876899999985787467318999740402236899998999998997665---574588999
Q ss_pred CCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01210012012059984553212202122320000003576655894422335415556665420133320048831112
Q gi|255764471|r 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 276 ~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
+.||++++++||++++|+|++.+.+..|..+.... .++++++|+||+||..... ...++++
T Consensus 286 I~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~-----------------~~~~~i~ 346 (445)
T PRK05291 286 IERSRKAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI-----------------DGLPVIR 346 (445)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC-----------------CCCCEEE
T ss_conf 99999999839999999879988872259999851--7998799985120466534-----------------7897599
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3453334858999999999998
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
|||++|.|++.|++.+.+....
T Consensus 347 iSak~g~Gi~~L~~~i~~~~~~ 368 (445)
T PRK05291 347 ISAKTGEGIDELEEALKQLVGF 368 (445)
T ss_pred EECCCCCCHHHHHHHHHHHHHC
T ss_conf 9837886999999999999704
No 16
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=100.00 E-value=4.2e-38 Score=275.71 Aligned_cols=161 Identities=34% Similarity=0.459 Sum_probs=140.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
.+.|||+|+||||||||||+|+|++.|+||++||||||.+.+.+.+++.++.|+||||+.. ..+...+.+.++++.+++
T Consensus 3 ~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~~~~~l~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK-PKKKLGERMVKAAWSALK 81 (168)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 8689999999999999999995897033238898263442368984997899995898665-145677899999998651
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHH----HH-HHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 779899997598877623445553321023322220565223012100124----55-3122220100111022201479
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE----IY-SLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e----~~-~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
+||+++||+|++.+.++.|.++.++|++.++|+++|+||+|.........+ +. ..++.++++|||++|.|+++|+
T Consensus 82 ~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L~ 161 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 36558999978989866779999999980998599997887047877899999999961899968999777896999999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|255764471|r 157 SVIFKIF 163 (470)
Q Consensus 157 ~~i~~~~ 163 (470)
+.|.+.+
T Consensus 162 ~~i~~~L 168 (168)
T cd04163 162 EEIVKYL 168 (168)
T ss_pred HHHHHHC
T ss_conf 9999539
No 17
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=3.4e-38 Score=276.28 Aligned_cols=164 Identities=34% Similarity=0.438 Sum_probs=142.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076--3689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK--NCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~i~~~~~~ai 80 (470)
..|||+||||||||||+|+|+|.+++|||+.||||||.+...+.|++.+|.|+||||+.... .+.++..+..+++.++
T Consensus 173 iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i 252 (438)
T PRK00093 173 IKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAI 252 (438)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 05999558886556788876543332047999851123267999899679999898987656421378899999999998
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH---------HHHHHCCCCCEEEHHHCCCC
Q ss_conf 877989999759887762344555332102332222056522301210012---------45531222201001110222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY---------EIYSLDFKEIVEISAEHDLG 151 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~---------e~~~lg~~~~i~iSA~~g~G 151 (470)
++||+++||+||.+|++.+|..+++++.+.++|+++|+||+|+...+.... .+..+..-+++++||++|.|
T Consensus 253 ~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g~g 332 (438)
T PRK00093 253 ERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTGQG 332 (438)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 64466999997665884888999999998199669999702225663899999999999756125898779985147779
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 014799999986101
Q gi|255764471|r 152 TSELHSVIFKIFKQK 166 (470)
Q Consensus 152 i~~L~~~i~~~~~~~ 166 (470)
++.|++.+...+..-
T Consensus 333 i~kl~~~i~~v~~~~ 347 (438)
T PRK00093 333 VDKLFESILEAYESA 347 (438)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999996
No 18
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=8.6e-38 Score=273.61 Aligned_cols=161 Identities=34% Similarity=0.447 Sum_probs=138.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076--3689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK--NCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~i~~~~~~ai 80 (470)
.+|||+|+||||||||||+|+|++.++||++||||||.+++.+++++.+|.++||||+.... ...++..+..+++.++
T Consensus 3 ~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999989999899999998389844434999915733289999999889998578842134421068899999999999
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH-----HH----HHHHCCCCCEEEHHHCCCC
Q ss_conf 87798999975988776234455533210233222205652230121001-----24----5531222201001110222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-----YE----IYSLDFKEIVEISAEHDLG 151 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~-----~e----~~~lg~~~~i~iSA~~g~G 151 (470)
++||+++||+|+++++++.|..+++++++.++|+++|+||+|........ .+ +..+++.++++|||++|.|
T Consensus 83 ~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~G 162 (174)
T cd01895 83 ERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG 162 (174)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 84286589975898998899999999998599869998567526764778999999999873416899289997447989
Q ss_pred CHHHHHHHHHHH
Q ss_conf 014799999986
Q gi|255764471|r 152 TSELHSVIFKIF 163 (470)
Q Consensus 152 i~~L~~~i~~~~ 163 (470)
+++|++.|.+.+
T Consensus 163 i~~L~~~I~ei~ 174 (174)
T cd01895 163 VDKLFDAIDEVY 174 (174)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869
No 19
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=3.9e-37 Score=269.17 Aligned_cols=245 Identities=24% Similarity=0.307 Sum_probs=178.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 30388640356425678876520121100024566542023114203406999817110444443000111000121001
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
-+.|||+||||||||||+|+|+|+.++||++.||||||.++..+++++.+|.++||||+... .+.+++....+++.|
T Consensus 38 lPiVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~---~~~~~~~i~~q~~~a 114 (474)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDTGGWEPD---AKGLQALVAEQAEVA 114 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCC---HHHHHHHHHHHHHHH
T ss_conf 99899989999888999999868863880598998808636899999928999979999997---478999999999999
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
+++||+++||+|+++|++..|..+++++.+.+||+++|+||+|........ ..|..+.+-.+++|||.+|.
T Consensus 115 i~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~~~~~---------~efy~LGf~~~i~ISA~Hg~ 185 (474)
T PRK03003 115 MRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERGEADA---------AALWSLGLGEPHPVSALHGR 185 (474)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH---------HHHHHHCCCCEEEEEHHCCC
T ss_conf 986999999996898988789999999875399779986755662102348---------99997579986996020378
Q ss_pred CHHHHHHHHHHHHHHHHC-----------------CCC-HHHHHHHHHHHHHH-CCCCC-----------CCCCEEEE--
Q ss_conf 858999999999998414-----------------689-78989999999982-88787-----------78712069--
Q gi|255764471|r 363 GLDDLMVSVLEINKLWKT-----------------RIT-TSYLNSWLQKTQLQ-NPPPT-----------IFNRYNRL-- 410 (470)
Q Consensus 363 gi~~l~~~i~~~~~~~~~-----------------ri~-T~~LN~~l~~~~~~-~~pp~-----------~~g~~~ki-- 410 (470)
|+.+|++.+.+....... .+. -+.+|.++.+--.- .+.|- .+|+..++
T Consensus 186 Gi~dLld~i~~~l~~~~~~~~~~~~~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liD 265 (474)
T PRK03003 186 GVADLLDAVLAALPEVPEVGSAVGGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVD 265 (474)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 97999999997487766443345776279998089987889999985897567458998515440589999998999998
Q ss_pred ----------E----------------EE-----EECCCCCC----------------EEEEEECCHHHCCHHHHHHHHH
Q ss_conf ----------9----------------99-----86287977----------------8999925822388668999999
Q gi|255764471|r 411 ----------K----------------YI-----TQIQSSPP----------------SFLIFCTFPNKIPESYKRYLIN 443 (470)
Q Consensus 411 ----------~----------------y~-----~Q~~~~Pp----------------~f~if~n~~~~~~~~y~ryl~n 443 (470)
. ++ .-=.+.+. .+++-+|+-+.++...+.++++
T Consensus 266 TAGiRrk~kv~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~ 345 (474)
T PRK03003 266 TAGLRRKVGQASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLER 345 (474)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHH
T ss_conf 98766355334314589999999998733557999854658749999999999980995799997144168678999999
Q ss_pred HHHHHC-CCCCCEEEEE
Q ss_conf 888976-8986448999
Q gi|255764471|r 444 RLRINF-SLSGIPIRMC 459 (470)
Q Consensus 444 ~~r~~f-~~~g~pi~i~ 459 (470)
.++..| -+.+.|+-..
T Consensus 346 ~i~~~l~~~~~~piv~I 362 (474)
T PRK03003 346 EIDRELAQVRWAPRVNI 362 (474)
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99864554489856999
No 20
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=1e-36 Score=266.37 Aligned_cols=158 Identities=30% Similarity=0.394 Sum_probs=114.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|||+||||||||||||+|+|.+ ++|+++||||||++.+.+.+++.++.|+||||++........+.+..++. +.++|
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~~-~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~-~~~~a 78 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGAR-QHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKVARDYL-LEEKP 78 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH-HHCCC
T ss_conf 98998899989999999995999-65638999723335768752516799996888501465327899999998-62368
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHH----HHCCCCCEEEHHHCCCCCHHHHHHH
Q ss_conf 989999759887762344555332102332222056522301210012455----3122220100111022201479999
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIY----SLDFKEIVEISAEHDLGTSELHSVI 159 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~----~lg~~~~i~iSA~~g~Gi~~L~~~i 159 (470)
|++|||+|+.. ...+..+...+.+.++|+++|+||+|....+....++. .+|+ ++++|||++|.|+++|++.|
T Consensus 79 Dlvl~vvDa~~--~er~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~~~~~l~~~lg~-~vi~ISA~~g~Gi~eL~~~I 155 (188)
T pfam02421 79 DVIINVVDATN--LERNLYLTLQLLELGIPVVVALNMMDEAEKKGIKIDIKKLSELLGV-PVVPTSARKGEGIDELKDAI 155 (188)
T ss_pred CCEEEEEECCC--HHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHH
T ss_conf 73699976762--4544899999997699889996170201003652039999987399-68999931699999999999
Q ss_pred HHHHHHC
Q ss_conf 9986101
Q gi|255764471|r 160 FKIFKQK 166 (470)
Q Consensus 160 ~~~~~~~ 166 (470)
.+.+.+.
T Consensus 156 ~~~~~~~ 162 (188)
T pfam02421 156 IEVAEGK 162 (188)
T ss_pred HHHHHCC
T ss_conf 9997268
No 21
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=3e-36 Score=263.19 Aligned_cols=152 Identities=32% Similarity=0.472 Sum_probs=134.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|+|+|+||||||||||+|+|+++||||+.||||||.++..+.++|.++.|+||+|+++ ..+.+++.-.+++..++++
T Consensus 217 ~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~-t~d~IE~~GI~ra~~~~~~ 295 (445)
T PRK05291 217 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TEDEVEKIGIERSRKAIEE 295 (445)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 869988999876899999985787467318999740402236899998999998997665-5745889999999999983
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf 79899997598877623445553321023322220565223012100124553122220100111022201479999998
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
||++|+|+|++.+....|..+...+ .++++++|+||+|+...... -.+.+.|||++|.|+++|++.|.+.
T Consensus 296 ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~~--------~~~~i~iSak~g~Gi~~L~~~i~~~ 365 (445)
T PRK05291 296 ADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKID--------GLPVIRISAKTGEGIDELEEALKQL 365 (445)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCCC--------CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999879988872259999851--79987999851204665347--------8975999837886999999999999
Q ss_pred HHH
Q ss_conf 610
Q gi|255764471|r 163 FKQ 165 (470)
Q Consensus 163 ~~~ 165 (470)
+..
T Consensus 366 ~~~ 368 (445)
T PRK05291 366 VGF 368 (445)
T ss_pred HHC
T ss_conf 704
No 22
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=1.3e-37 Score=272.40 Aligned_cols=156 Identities=27% Similarity=0.452 Sum_probs=135.7
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 86403564256788765201211000245665420231142034069998171104444430001110001210012012
Q gi|255764471|r 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 207 ~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
|++|+||||||||+|+|+|+++++||+.||||||.+...++++|.++.|+||||+++.. +.++..+..+++.++++|
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~---~~~~~~~~~~~~~~i~~a 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD---EGISKEIREQAELAIEEA 77 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC---CHHHHHHHHHHHHHHHHC
T ss_conf 90489998899999999588753540799935667899999999889998578755566---067899999999999865
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 366 (470)
|++++|+|++++++.+|..+++.+.+.++|+++|+||||+++++... .++ ..+.+.++++|||++|.|+++
T Consensus 78 d~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~-~~~--------~~l~~~~~i~iSA~~g~Gid~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEA-AEF--------YSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH-HHH--------HHCCCCCEEEEEEECCCCHHH
T ss_conf 90799998999999899999999998479809999787165864569-999--------965999759999658949999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764471|r 367 LMVSVLEI 374 (470)
Q Consensus 367 l~~~i~~~ 374 (470)
|++.+.+.
T Consensus 149 L~~~I~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHHH
T ss_conf 99999965
No 23
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=4.6e-36 Score=261.94 Aligned_cols=155 Identities=35% Similarity=0.488 Sum_probs=114.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|||+|+||||||||||+|+|++.|+|+++||||||.+++.+.++|++|.|+||||+... .+.++..+.++++.++++
T Consensus 2 ~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~-~~~~e~~~~~~~~~~i~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET-EDEIEKIGIERAREAIEE 80 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCC
T ss_conf 7999988999989999999968973343288984786326789539988999726775444-578999999999863015
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf 79899997598877623445553321023322220565223012100124553122220100111022201479999998
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
||+++||+|++.+....|..+...+ .++|+++|+||+|....++.. ......+++||||++|.|+++|++.|.+.
T Consensus 81 aDlil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~~---~~~~~~~vi~ISA~~g~Gi~~L~~~I~e~ 155 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSELL---SLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHH---HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7679999889877888899999851--479989999676014866679---85289977999852795999999999997
Q ss_pred H
Q ss_conf 6
Q gi|255764471|r 163 F 163 (470)
Q Consensus 163 ~ 163 (470)
.
T Consensus 156 a 156 (157)
T cd04164 156 A 156 (157)
T ss_pred C
T ss_conf 2
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=269.72 Aligned_cols=160 Identities=34% Similarity=0.449 Sum_probs=81.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763--6899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN--CSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~i~~~~~~ai~ 81 (470)
.|||+||||||||||+|+|+|+.++||++.||||||.+...++|++++|.|+||+|+..... +.++..-...++.|++
T Consensus 180 kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~ 259 (444)
T COG1160 180 KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIE 259 (444)
T ss_pred EEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHH
T ss_conf 89999278787058887750682598459998622033125899881899998778774664124268875054676786
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH-H--------HHHHHCCCCCEEEHHHCCCCC
Q ss_conf 7798999975988776234455533210233222205652230121001-2--------455312222010011102220
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-Y--------EIYSLDFKEIVEISAEHDLGT 152 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~-~--------e~~~lg~~~~i~iSA~~g~Gi 152 (470)
.||++++|+||++|++.+|..++.++.+.++++++|+||+|+...+... . .|..+++.++++|||.+|.|+
T Consensus 260 ~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i 339 (444)
T COG1160 260 RADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGL 339 (444)
T ss_pred HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH
T ss_conf 56889999988878368899999999975897499997532578516679999999998722136772799970478772
Q ss_pred HHHHHHHHHHH
Q ss_conf 14799999986
Q gi|255764471|r 153 SELHSVIFKIF 163 (470)
Q Consensus 153 ~~L~~~i~~~~ 163 (470)
+.|++++.+..
T Consensus 340 ~~l~~~i~~~~ 350 (444)
T COG1160 340 DKLFEAIKEIY 350 (444)
T ss_pred HHHHHHHHHHH
T ss_conf 78899999999
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=100.00 E-value=5e-37 Score=268.47 Aligned_cols=165 Identities=31% Similarity=0.443 Sum_probs=138.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 30388640356425678876520121100024566542023114203406999817110444443000111000121001
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
...||++|+||||||||+|+|+|+++++||+.||||||.+...+.+++.++.|+||||+.+... ..+......++++
T Consensus 3 ~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK---KLGERMVKAAWSA 79 (168)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCCCHH---HHHHHHHHHHHHH
T ss_conf 8689999999999999999995897033238898263442368984997899995898665145---6778999999986
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
+++||++++|+|++++.+++|..+++++.+.++|+++|+||||+++++.... +...... ....+.++++|||++|+
T Consensus 80 l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~~~~-~~~~~~~---~~~~~~~vi~iSA~~g~ 155 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLL-PLLEKLK---ELGPFAEIFPISALKGE 155 (168)
T ss_pred HHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHHHHH-HHHHHHH---HHCCCCCEEEEECCCCC
T ss_conf 5136558999978989866779999999980998599997887047877899-9999999---61899968999777896
Q ss_pred CHHHHHHHHHHH
Q ss_conf 858999999999
Q gi|255764471|r 363 GLDDLMVSVLEI 374 (470)
Q Consensus 363 gi~~l~~~i~~~ 374 (470)
|+++|++.+.+.
T Consensus 156 Gid~L~~~i~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999953
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=258.73 Aligned_cols=160 Identities=34% Similarity=0.476 Sum_probs=140.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|||+|+||||||||+|+|+++++|||++.||||||.++..+.++|.++.|+||+|+++ .++.++..-.++++.++++
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe-t~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE-TDDVVERIGIERAKKAIEE 296 (454)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 649998799886799999886678667428999741037899998988999985677666-7348999999999999985
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCC-CCEEEHHHCCCCCHHHHHHHHH
Q ss_conf 798999975988776234455533210233222205652230121001245531222-2010011102220147999999
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~-~~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
||+||||+|++.+++..|..+.. +...++|+++|+||+|.......... ++.-+ ..+.+||++|.|++.|.+.|..
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--KLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred CCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCCHH--HCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99899997088777601177887-24368977999960211564321012--0267882699982576579999999999
Q ss_pred HHHHC
Q ss_conf 86101
Q gi|255764471|r 162 IFKQK 166 (470)
Q Consensus 162 ~~~~~ 166 (470)
.+...
T Consensus 374 ~~~~~ 378 (454)
T COG0486 374 LFGKG 378 (454)
T ss_pred HHHHC
T ss_conf 98630
No 27
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=100.00 E-value=4.2e-37 Score=268.94 Aligned_cols=172 Identities=27% Similarity=0.458 Sum_probs=138.0
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHC
Q ss_conf 32344430388640356425678876520121100024566542023114203406999817110444443000111000
Q gi|255764471|r 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTV 276 (470)
Q Consensus 197 ~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~ 276 (470)
.....+|+++||+|.||||||||+|+++.+||+|||++||||||.|+..|+.+|+.+.++||||||+ .++.+|+.++
T Consensus 219 l~~l~~g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~---~~~~~E~~Gi 295 (473)
T TIGR00450 219 LEKLKDGFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIRE---HADKVERLGI 295 (473)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCC---CHHHHHHHHH
T ss_conf 9984089479996478875789999876228705527668832044205777467899851467510---2004667768
Q ss_pred CCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 121001201205998455321220212232000000357665589442233541555-6665420133320048831112
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.||.++++.||+||+++|++.|.++.|..++....+..||+++|+||.||..++... .+.+..++. .+...
T Consensus 296 ekS~~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~~nkr~~~~~~~~~~~~--------~~~~~ 367 (473)
T TIGR00450 296 EKSFKAIKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLAINKRKLELEFLVSELK--------LTVLL 367 (473)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH--------HHHHH
T ss_conf 9989998605734788874789881058999997321797799973501650023444444131134--------57889
Q ss_pred CCCC---CCCCHHHHHHHHHHHHHHHH
Q ss_conf 3453---33485899999999999841
Q gi|255764471|r 356 ISGR---TGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 356 iSA~---~g~gi~~l~~~i~~~~~~~~ 379 (470)
++|. ...+++.|.+.|...|..-.
T Consensus 368 ~~~~~~~~~~~~d~L~~~i~~~~~~~~ 394 (473)
T TIGR00450 368 LSAKQLKIKALVDLLTQKINAFYSKER 394 (473)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 988730656679999999998741444
No 28
>PRK00454 engB GTPase EngB; Reviewed
Probab=100.00 E-value=1.2e-35 Score=259.04 Aligned_cols=164 Identities=24% Similarity=0.311 Sum_probs=122.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC-------CCCCCCCCHHHH
Q ss_conf 430388640356425678876520121-100024566542023114203406999817110-------444443000111
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNR-LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-------RKPSRITESLEQ 273 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r-~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi-------rkk~~~~~~~E~ 273 (470)
+.++|||+||||||||||+|+|+|+++ ++||++|||||+. .+...+.+|.|+||||+ +.+.+....++.
T Consensus 23 ~~p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i---~~~~~~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI---NFFEVNDGLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEE---EEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89689998489888999999986897369974788860798---887618833899379974132778788899999999
Q ss_pred HHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCCCCC
Q ss_conf 000121001201205998455321220212232000000357665589442233541555666542013332-0048831
Q gi|255764471|r 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL-PQIGDIY 352 (470)
Q Consensus 274 ~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~-~~~~~~~ 352 (470)
|.. +. ...+++++|+||++|+++||.++++++.+.++|+++|+||||++++... ......+.+.+ .+..+.+
T Consensus 100 yl~--~~---~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~--~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 100 YLQ--KR---ENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGER--KKLLKKVKKALARFAADPE 172 (196)
T ss_pred HHH--HH---HCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHH--HHHHHHHHHHHHHCCCCCC
T ss_conf 999--62---3336389999716589888999999998627785999987251697899--9999999999761258982
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11234533348589999999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
+++|||++|.|+++|++.|.+..
T Consensus 173 ii~ISA~~g~GI~eL~~~I~k~L 195 (196)
T PRK00454 173 VLLFSSLKKTGIDELRAAIAKWL 195 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89996999979899999999985
No 29
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=100.00 E-value=1.9e-35 Score=257.82 Aligned_cols=159 Identities=26% Similarity=0.358 Sum_probs=128.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
|+|||||+||||||||||+|+|++.+ |+++||||||...+.+.+++.++.|+||||+.+.+.+. ...+..++..++.+
T Consensus 1 P~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~-~~~ie~~~~~~l~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAITALAH 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHH-HHHHHHHHHHHHHH
T ss_conf 97999889998899999999589860-23758723574368999837276872488655674788-88999999999983
Q ss_pred -CCEEEEEECCCCCCC---HHHHHHHHHHHC--CCCCCCCCHHHHCCCHHHH--HHHHHHHHCCCCCEEEHHHCCCCCHH
Q ss_conf -798999975988776---234455533210--2332222056522301210--01245531222201001110222014
Q gi|255764471|r 83 -AHLILFLIDSKAGIT---PYDHAITSFLRK--KNIPIIIVSNKMDTRIAQR--NFYEIYSLDFKEIVEISAEHDLGTSE 154 (470)
Q Consensus 83 -aD~il~vvD~~~g~~---~~D~~i~~~lr~--~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~~~~i~iSA~~g~Gi~~ 154 (470)
+|+++||+|+..... ..+..+.+.++. .++|+++|+||+|....+. ...++++++..++++|||++|.|+++
T Consensus 79 ~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~vi~ISA~~g~Gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 57768999968876784899999999987765258887999947534581007999999970899889998158969999
Q ss_pred HHHHHHHHH
Q ss_conf 799999986
Q gi|255764471|r 155 LHSVIFKIF 163 (470)
Q Consensus 155 L~~~i~~~~ 163 (470)
|++.|.+.+
T Consensus 159 L~~~i~ell 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHC
T ss_conf 999999963
No 30
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=1.8e-36 Score=264.75 Aligned_cols=156 Identities=31% Similarity=0.579 Sum_probs=135.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 30388640356425678876520121100024566542023114203406999817110444443000111000121001
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
.++||++|+||||||||+|+|+|+++++||++||||||.+...+.++|+++.|+||||+++. .+.+|..++.+++.+
T Consensus 1 ~~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~---~~~~e~~~~~~~~~~ 77 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET---EDEIEKIGIERAREA 77 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCC---CCHHHHHHHHHHHHH
T ss_conf 97999988999989999999968973343288984786326789539988999726775444---578999999999863
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
++.||++++|+|++++...+|..+.... .++|+++|+||+|++++.... ......++++|||++|.
T Consensus 78 i~~aDlil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~~------------~~~~~~~vi~ISA~~g~ 143 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSELL------------SLLAGKPIIAISAKTGE 143 (157)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHH------------HHCCCCCEEEEECCCCC
T ss_conf 0157679999889877888899999851--479989999676014866679------------85289977999852795
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8589999999999
Q gi|255764471|r 363 GLDDLMVSVLEIN 375 (470)
Q Consensus 363 gi~~l~~~i~~~~ 375 (470)
|+++|++.+.+++
T Consensus 144 Gi~~L~~~I~e~a 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHHC
T ss_conf 9999999999972
No 31
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=1.3e-36 Score=265.60 Aligned_cols=180 Identities=28% Similarity=0.349 Sum_probs=140.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
.|||+|+||||||||+|+|+|+ +++||+.||||||.+...+.++|.+|.|+||||++....... .|. +.+..-..+
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~-~~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~-~e~--v~~~~~~~~ 76 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGA-RQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSE-EEK--VARDYLLEE 76 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CCEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCH-HHH--HHHHHHHHC
T ss_conf 9899889998999999999599-965638999723335768752516799996888501465327-899--999998623
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 12059984553212202122320000003576655894422335415556665420133320048831112345333485
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi 364 (470)
+||++++|+||++. +++..+...+.+.++|+|+|+||||+++++.... + ...+ ...-+.|+++|||++|.|+
T Consensus 77 ~aDlvl~vvDa~~~--er~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~-~-~~~l----~~~lg~~vi~ISA~~g~Gi 148 (188)
T pfam02421 77 KPDVIINVVDATNL--ERNLYLTLQLLELGIPVVVALNMMDEAEKKGIKI-D-IKKL----SELLGVPVVPTSARKGEGI 148 (188)
T ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHH-H-HHHH----HHHCCCCEEEEEEECCCCH
T ss_conf 68736999767624--5448999999976998899961702010036520-3-9999----9873996899993169999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999984146897898999999998
Q gi|255764471|r 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 (470)
Q Consensus 365 ~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~ 396 (470)
++|++.|.++++..-.++.+...+.-+++++.
T Consensus 149 ~eL~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (188)
T pfam02421 149 DELKDAIIEVAEGKVKPPLKINYGEEIEEAIS 180 (188)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999997268999801689889999999
No 32
>PRK00454 engB GTPase EngB; Reviewed
Probab=100.00 E-value=2e-36 Score=264.40 Aligned_cols=159 Identities=25% Similarity=0.285 Sum_probs=122.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-HHHHHHHHHHH---H
Q ss_conf 5089997189887888999985885-01025898530223899999899899999658842076-36899999999---9
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK-NCSIAKQMNDQ---T 76 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~-~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~i~~~---~ 76 (470)
.|.||||||||||||||||+|+|++ .|+||++|||||+..+. ..+.+|.||||||++... .....+.+.+. .
T Consensus 24 ~p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~~~---~~~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~y 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF---EVNDGLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEE---ECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9689998489888999999986897369974788860798887---6188338993799741327787888999999999
Q ss_pred HHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH---HHHHH-----HHCCCCCEEEHHHC
Q ss_conf 99998779899997598877623445553321023322220565223012100---12455-----31222201001110
Q gi|255764471|r 77 ELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN---FYEIY-----SLDFKEIVEISAEH 148 (470)
Q Consensus 77 ~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~---~~e~~-----~lg~~~~i~iSA~~ 148 (470)
+...+..+++++|+|++.|++++|.++++++++.++|+++|+||+|..+..+. ..++. ..++.++++|||++
T Consensus 101 l~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~~ 180 (196)
T PRK00454 101 LQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSLK 180 (196)
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 99623336389999716589888999999998627785999987251697899999999999976125898289996999
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 222014799999986
Q gi|255764471|r 149 DLGTSELHSVIFKIF 163 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~ 163 (470)
|.|+++|++.|.+.+
T Consensus 181 g~GI~eL~~~I~k~L 195 (196)
T PRK00454 181 KTGIDELRAAIAKWL 195 (196)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 979899999999985
No 33
>PRK04213 GTP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=252.99 Aligned_cols=162 Identities=30% Similarity=0.338 Sum_probs=125.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCC--CHHH----HHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207--6368----99999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG--KNCS----IAKQMNDQ 75 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~--~~~~----~~~~i~~~ 75 (470)
+|.||||||||||||||||+|+|++.+ |+++||||||+..+. + .+|.++||||+... .... +...+.+.
T Consensus 1 ~P~VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~~~~~--~--~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~ 75 (195)
T PRK04213 1 MPEIIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKPNEYD--W--GDFILVDLPGFGFMSGVPKKVQERIKDEIVHY 75 (195)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEE--C--CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 987999769998899999999689851-348996487345885--0--88999999996222458888999999999999
Q ss_pred HHHHHHHCCEEEEEECCCCC-----------CCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH-HHHH-HHC-----
Q ss_conf 99999877989999759887-----------76234455533210233222205652230121001-2455-312-----
Q gi|255764471|r 76 TELAINEAHLILFLIDSKAG-----------ITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-YEIY-SLD----- 137 (470)
Q Consensus 76 ~~~ai~~aD~il~vvD~~~g-----------~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~-~e~~-~lg----- 137 (470)
...+.+.+|++++|+|++.+ .++.|.+++++|++.++|+++|+||+|..+..+.. .++. .++
T Consensus 76 ~~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~~~ 155 (195)
T PRK04213 76 IEDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIKNSEEVLDEIAERLGLYPPW 155 (195)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHHHHHHHHHHHCCCCH
T ss_conf 99988517899999957865442112344567777899999998749987999987330587788899999998257615
Q ss_pred ---CCCCEEEHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf ---22201001110222014799999986101234
Q gi|255764471|r 138 ---FKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 (470)
Q Consensus 138 ---~~~~i~iSA~~g~Gi~~L~~~i~~~~~~~~~~ 169 (470)
+..++++||+.+ |+++|++.|.+.+++...+
T Consensus 156 ~~~~~~iv~iSakk~-Gid~L~~~I~~~L~E~~~~ 189 (195)
T PRK04213 156 RQWLDIIAPISAKKG-GIEALKGLINKRLREFKRD 189 (195)
T ss_pred HHCCCEEEEEECCCC-CHHHHHHHHHHHCHHHCCC
T ss_conf 656987999845779-9999999999967553741
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=1.5e-34 Score=251.74 Aligned_cols=156 Identities=26% Similarity=0.261 Sum_probs=67.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998-9989999965884207636899999999999998
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
|+|||||+||||||||||+|+|++ ++|+++||||||...+.+.+ ++.+|.|+|||||....+..+-+.+ +.++.++.
T Consensus 42 p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p~~lie~~-~~tle~i~ 119 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RSTLEEVA 119 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHH-HHHHHHHH
T ss_conf 879998899998999999994899-6341567764576366899569977999836864467837899999-99999997
Q ss_pred HCCEEEEEECCCCCCCHHH----HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHH
Q ss_conf 7798999975988776234----455533210233222205652230121001245531222201001110222014799
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D----~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~ 157 (470)
+||++|||+|++.+....+ ..+.+.+...++|+++|+||+|....+.... ++..+..++++|||++|.|+++|.+
T Consensus 120 ~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~-~~~~~~~~~i~ISA~~g~Gid~L~~ 198 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEE-RLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH-HHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 398999999799853667799999999980655576078886704799575899-9970899879998868949999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|255764471|r 158 VIFK 161 (470)
Q Consensus 158 ~i~~ 161 (470)
.|.+
T Consensus 199 ~I~e 202 (204)
T cd01878 199 AIEE 202 (204)
T ss_pred HHHH
T ss_conf 9995
No 35
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=255.39 Aligned_cols=179 Identities=28% Similarity=0.319 Sum_probs=152.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 43038864035642567887652012110002456654202311420340699981711044444300011100012100
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+...|||+||||||||||+|+|+|++.||||+.|+|||..|.+.+..++.++.|+||||+.+. ...+..+++..++.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCCC---CHHHHHHHHHHHHH
T ss_conf 689999986998768999989856825751598531144214799869844999848988876---51788999999998
Q ss_pred EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122320000003576655894422335415556665420133320048831112345333
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g 361 (470)
++..+|+++||+|+++++...|..+++.+.+...|+++++||+|.+..+... ..+.+.....++ +..+++|||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~---f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLP---FKEIVPISALKG 157 (298)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH-HHHHHHHHHHCC---CCEEEEEECCCC
T ss_conf 7245759999986665689107999997764389869999840257847789-999999985088---301799510156
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 48589999999999984146897898
Q gi|255764471|r 362 EGLDDLMVSVLEINKLWKTRITTSYL 387 (470)
Q Consensus 362 ~gi~~l~~~i~~~~~~~~~ri~T~~L 387 (470)
.|++.|++.+.+.....-...|-..+
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~i 183 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQI 183 (298)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf 78899999999858888884885651
No 36
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=3.5e-34 Score=249.25 Aligned_cols=153 Identities=27% Similarity=0.370 Sum_probs=114.1
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 97189887888999985885010258985302238999998998999996588420763689999999999999877989
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLI 86 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~i 86 (470)
||||||||||||||+|+|.+ +.|+++||||||+..+.+.+++.+|.|+||||++.......++.+..... ..++||++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~-~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~-~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFL-LGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCE
T ss_conf 97989888999999995998-64617898276347889962993799997987412564135678999999-85178717
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH---HHH-HHCCCCCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf 999759887762344555332102332222056522301210012---455-3122220100111022201479999998
Q gi|255764471|r 87 LFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY---EIY-SLDFKEIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 87 l~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~---e~~-~lg~~~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
+||+|++. ...+..+..+++..++|+++|+||+|....+.... .+. .+|. ++++|||++|.|+++|++.|.+.
T Consensus 79 l~vvD~~~--~~~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~-~ii~iSA~~g~Gi~~L~~~i~el 155 (158)
T cd01879 79 VNVVDATN--LERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEEECCH--HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99977740--6776899999986599889994027765522546679999987199-48999877897999999999998
Q ss_pred HH
Q ss_conf 61
Q gi|255764471|r 163 FK 164 (470)
Q Consensus 163 ~~ 164 (470)
+.
T Consensus 156 ~~ 157 (158)
T cd01879 156 AE 157 (158)
T ss_pred HC
T ss_conf 67
No 37
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=9.3e-36 Score=259.89 Aligned_cols=154 Identities=24% Similarity=0.303 Sum_probs=117.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC--CC-----CCCCCCHHHH
Q ss_conf 430388640356425678876520121-100024566542023114203406999817110--44-----4443000111
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNR-LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK-----PSRITESLEQ 273 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r-~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi--rk-----k~~~~~~~E~ 273 (470)
+.++|||+||||||||||+|+|+|+++ ++||++|||||+.. +...|.++.|+||||+ .+ +.+....++.
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~---~~~~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN---FFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECC---EEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 897899986999888999999868985589708997366023---20104736999777602112788889999999999
Q ss_pred HHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 000121001201205998455321220212232000000357665589442233541555666542013332004-8831
Q gi|255764471|r 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDIY 352 (470)
Q Consensus 274 ~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~-~~~~ 352 (470)
|. ...+..+.+++|+||++|+++||..+++++.+.++|+++++||||+++... ......++.+.+.+. .+.+
T Consensus 94 ~~-----~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~--~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 94 YL-----RGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSE--RNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HH-----HHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCCCC
T ss_conf 99-----998864302898743779989999999999975998899997813069899--99999999999733668894
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 1123453334858
Q gi|255764471|r 353 INTISGRTGEGLD 365 (470)
Q Consensus 353 i~~iSA~~g~gi~ 365 (470)
+++|||++|+|++
T Consensus 167 v~~ISA~~g~GID 179 (179)
T TIGR03598 167 VQLFSSLKKTGIE 179 (179)
T ss_pred EEEEECCCCCCCC
T ss_conf 8999799983879
No 38
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=4.8e-34 Score=248.35 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=114.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-----HHHHHHHHHHH
Q ss_conf 5089997189887888999985885-01025898530223899999899899999658842076-----36899999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK-----NCSIAKQMNDQ 75 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~-~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~-----~~~~~~~i~~~ 75 (470)
.|.||||||||||||||||+|+|++ .|+||++|||||+...... +.++.||||||+.... ...+. .+.+.
T Consensus 18 ~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~~~---~~~~~lvDtpGyG~~~~~~~~~~~~~-~~~~~ 93 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQ-KLIEE 93 (179)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEE---CCCEEEEECCCHHHCCCCHHHHHHHH-HHHHH
T ss_conf 978999869998889999998689855897089973660232010---47369997776021127888899999-99999
Q ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHH-HHH----CCCCCEEEHHH
Q ss_conf 9999987798999975988776234455533210233222205652230121001---245-531----22220100111
Q gi|255764471|r 76 TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEI-YSL----DFKEIVEISAE 147 (470)
Q Consensus 76 ~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~-~~l----g~~~~i~iSA~ 147 (470)
++...+.++.++||+|++.|++++|.+++++|++.++|+++|+||+|..+.++.. .++ .+| .+.++++|||+
T Consensus 94 ~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~ 173 (179)
T TIGR03598 94 YLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSL 173 (179)
T ss_pred HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 99998864302898743779989999999999975998899997813069899999999999997336688948999799
Q ss_pred CCCCCH
Q ss_conf 022201
Q gi|255764471|r 148 HDLGTS 153 (470)
Q Consensus 148 ~g~Gi~ 153 (470)
+|.|++
T Consensus 174 ~g~GID 179 (179)
T TIGR03598 174 KKTGIE 179 (179)
T ss_pred CCCCCC
T ss_conf 983879
No 39
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=100.00 E-value=2.4e-34 Score=250.39 Aligned_cols=153 Identities=25% Similarity=0.339 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH-HHHHHHHHCCC-CCEEEHHHCC
Q ss_conf 999999999877989999759887762344555332102332222056522301210-01245531222-2010011102
Q gi|255764471|r 72 MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR-NFYEIYSLDFK-EIVEISAEHD 149 (470)
Q Consensus 72 i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~-~~~e~~~lg~~-~~i~iSA~~g 149 (470)
.++|..+++++||+||+|+||+.++++.|.++.+++++.+||+++|+||+|+...+. ..+..|.++++ +.+++||.|+
T Consensus 2 ~rr~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~~~g~~~i~iSa~~~ 81 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 78999999987999999998788999869899999975699399997755558989999999998289997378701267
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 22014799999986101234511221000011111122211123343323444303886403564256788765201211
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ 229 (470)
.|+++|.+.+.+..++. .++++++++|+||||||||+|+|+|++++
T Consensus 82 ~g~~~L~~~i~~~~~~~----------------------------------~~~~~v~ivG~PNVGKSTLIN~L~~~~~~ 127 (156)
T cd01859 82 LGTKILRRTIKELAKID----------------------------------GKEGKVGVVGYPNVGKSSIINALKGRHSA 127 (156)
T ss_pred CCHHHHHHHHHHHHCCC----------------------------------CCCEEEEEECCCCCCHHHHHHHHHCCCEE
T ss_conf 57999999999860235----------------------------------66628999814784598999997488137
Q ss_pred CCHHHHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf 00024566542023114203406999817110
Q gi|255764471|r 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 230 ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
+||+.||||||.... .. +..+.|+|||||
T Consensus 128 ~v~~~pGtTr~~~~i--~~-~~~~~liDTpGi 156 (156)
T cd01859 128 STSPSPGYTKGEQLV--KI-TSKIYLLDTPGV 156 (156)
T ss_pred EECCCCCEECCEEEE--EE-CCCEEEEECCCC
T ss_conf 775999807055999--97-998899989099
No 40
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=100.00 E-value=8.1e-35 Score=253.58 Aligned_cols=164 Identities=24% Similarity=0.250 Sum_probs=63.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCC--CCCCCCHHHHHHCCCCCEE
Q ss_conf 88640356425678876520121-10002456654202311420340699981711044--4443000111000121001
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNR-LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK--PSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r-~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirk--k~~~~~~~E~~s~~~t~~~ 282 (470)
||++|+||||||||+|+|+|+++ ++||++|||||+.. .+.+ +.+|.|+||||+.. ..+...........+.++.
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~--~~~~-~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEE--EEEE-CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89998999999999999968996278607897785205--8853-87799996578401016877999999999999984
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
.+.+|++++|+|++++++++|+++++++.+.++|+++|+||||+++++.. .+.+.........+..+.|+++|||++|.
T Consensus 79 ~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~-~~~~~~~~~~l~~~~~~~~ii~iSA~~g~ 157 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSEL-AKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 06334999999632237486899999998769987999986753787789-99999999987421799839999889997
Q ss_pred CHHHHHHHHHH
Q ss_conf 85899999999
Q gi|255764471|r 363 GLDDLMVSVLE 373 (470)
Q Consensus 363 gi~~l~~~i~~ 373 (470)
|+++|++.+.+
T Consensus 158 gi~~L~~~I~~ 168 (170)
T cd01876 158 GIDELRALIEK 168 (170)
T ss_pred CHHHHHHHHHH
T ss_conf 79999999998
No 41
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=1.1e-33 Score=246.07 Aligned_cols=154 Identities=24% Similarity=0.380 Sum_probs=101.1
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 9718988788899998588501025898530223899999899-899999658842076368999999999999987798
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHL 85 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~ 85 (470)
|||+||||||||+|+|+|++.|+|+++||||||...+.+.+.+ .++.|+||||+..... ....+...+..++++||+
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~--~~~~~~~~~~~~~~~~D~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG--LGREREELARRVLERADL 78 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHCCE
T ss_conf 919799899999999958996101698998656458999954786599972798522231--016899999999986898
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH-------HHHHHHCCCCCEEEHHHCCCCCHHHHHH
Q ss_conf 999975988776234455533210233222205652230121001-------2455312222010011102220147999
Q gi|255764471|r 86 ILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSV 158 (470)
Q Consensus 86 il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~-------~e~~~lg~~~~i~iSA~~g~Gi~~L~~~ 158 (470)
++||+|++.+....|.++..+++..++|+++|+||+|....++.. .....++..++++|||++|.|+++|++.
T Consensus 79 il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~ 158 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREA 158 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 99998789997556699999999719742788534206787899999999999987679985999978989799999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|255764471|r 159 IFKI 162 (470)
Q Consensus 159 i~~~ 162 (470)
|.+.
T Consensus 159 i~e~ 162 (163)
T cd00880 159 LIEA 162 (163)
T ss_pred HHHH
T ss_conf 9951
No 42
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=7.5e-35 Score=253.78 Aligned_cols=161 Identities=24% Similarity=0.455 Sum_probs=135.8
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 6403564256788765201211000245665420231142034-069998171104444430001110001210012012
Q gi|255764471|r 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
|+|+||||||||+|+|+|+++++||+.||||||.+...+.+.+ .++.|+||||++....... ....+++++++.|
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~----~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR----EREELARRVLERA 76 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHH----HHHHHHHHHHHHC
T ss_conf 919799899999999958996101698998656458999954786599972798522231016----8999999999868
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 366 (470)
|++++|+|++++...+|..++..+.+.++|+++++||||+++++.. ...............+.|+++|||++|.|+++
T Consensus 77 D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 154 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEE--EELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHH--HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 9899998789997556699999999719742788534206787899--99999999998767998599997898979999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764471|r 367 LMVSVLEI 374 (470)
Q Consensus 367 l~~~i~~~ 374 (470)
|++.+.+.
T Consensus 155 L~~~i~e~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHHH
T ss_conf 99999951
No 43
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=100.00 E-value=2.2e-33 Score=243.87 Aligned_cols=157 Identities=27% Similarity=0.335 Sum_probs=120.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCC-CHHHHHHHH---HHHHHH
Q ss_conf 89997189887888999985885-0102589853022389999989989999965884207-636899999---999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-KNCSIAKQM---NDQTEL 78 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~-~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~i---~~~~~~ 78 (470)
.|||+|+||||||||||+|+|.+ .|+||++|||||+..... + +.+|.|+||||+... ......+.+ ..+++.
T Consensus 1 eIaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~~--~-~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--V-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEE--E-CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 989998999999999999968996278607897785205885--3-8779999657840101687799999999999998
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHHH-HH----CCCCCEEEHHHCCC
Q ss_conf 9987798999975988776234455533210233222205652230121001---2455-31----22220100111022
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEIY-SL----DFKEIVEISAEHDL 150 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~~-~l----g~~~~i~iSA~~g~ 150 (470)
..+.+|++++|+|++.++++.|.++++++++.++|+++|+||+|....+... .++. .+ ...++++|||++|.
T Consensus 78 ~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 40633499999963223748689999999876998799998675378778999999999987421799839999889997
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|+++|++.|.+++
T Consensus 158 gi~~L~~~I~~~L 170 (170)
T cd01876 158 GIDELRALIEKWL 170 (170)
T ss_pred CHHHHHHHHHHHC
T ss_conf 7999999999859
No 44
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=1.3e-33 Score=245.37 Aligned_cols=161 Identities=26% Similarity=0.376 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHHHHHHHCCCCCEEEHHHC
Q ss_conf 999999999987798999975988776234455533210233222205652230121--001245531222201001110
Q gi|255764471|r 71 QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFYEIYSLDFKEIVEISAEH 148 (470)
Q Consensus 71 ~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~e~~~lg~~~~i~iSA~~ 148 (470)
...+|...++++||+||||+|||.+++..|.++.++++ ++|+++|+||+|+.... ....++++.+..+++++||+|
T Consensus 8 k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~~~~~~~~~~~~sa~~ 85 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999998699999999898888765289999976--8988999855555897899999999980799679984226
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 22201479999998610123451122100001111112221112334332344430388640356425678876520121
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r 228 (470)
+.|+++|.+.+......... .......+.+++++|+|+||||||||+|+|.|+++
T Consensus 86 ~~g~~~l~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~v~ivG~PNVGKSSlIN~L~~~~~ 140 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEK-------------------------LKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHH-------------------------HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCE
T ss_conf 65789999999997354444-------------------------55515677771799973798761799999748863
Q ss_pred CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf 100024566542023114203406999817110
Q gi|255764471|r 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 229 ~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
++||+.||||||.. ..+.+..+.|+|||||
T Consensus 141 ~~v~~~pGtTr~~~---~i~~~~~~~liDTPGI 170 (171)
T cd01856 141 AKVGNKPGVTKGIQ---WIKISPGIYLLDTPGI 170 (171)
T ss_pred EEECCCCCCCCCEE---EEEECCCEEEEECCCC
T ss_conf 88769898532667---9996899999979988
No 45
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=100.00 E-value=5.5e-33 Score=241.24 Aligned_cols=162 Identities=31% Similarity=0.492 Sum_probs=128.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|||||.||||||||||+++.+.+||||+.||||||.+|+.++++|+.+.++||+|+++ ..+.+|+.-.+++..++++
T Consensus 226 ~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~-~~~~~E~~GiekS~~~i~~ 304 (473)
T TIGR00450 226 FKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIRE-HADKVERLGIEKSFKAIKQ 304 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 479996478875789999876228705527668832044205777467899851467510-2004667768998999860
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH-HHHHHHHHHCC-CCCEEEHHHC---CCCCHHHHH
Q ss_conf 798999975988776234455533210233222205652230121-00124553122-2201001110---222014799
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ-RNFYEIYSLDF-KEIVEISAEH---DLGTSELHS 157 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~-~~~~e~~~lg~-~~~i~iSA~~---g~Gi~~L~~ 157 (470)
||+||+|+|++.+.++.|-.+...+++.++|+++|+||.|+.... ....+++.--. -+...++|.+ ..+++.|.+
T Consensus 305 A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~~nkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~ 384 (473)
T TIGR00450 305 ADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLAINKRKLELEFLVSELKLTVLLLSAKQLKIKALVDLLTQ 384 (473)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 57347888747898810589999973217977999735016500234444441311345788998873065667999999
Q ss_pred HHHHHHHH
Q ss_conf 99998610
Q gi|255764471|r 158 VIFKIFKQ 165 (470)
Q Consensus 158 ~i~~~~~~ 165 (470)
.|.+.++.
T Consensus 385 ~i~~~~~~ 392 (473)
T TIGR00450 385 KINAFYSK 392 (473)
T ss_pred HHHHHHHH
T ss_conf 99987414
No 46
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00 E-value=3.4e-33 Score=242.64 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=96.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 388640356425678876520121100024566542023114203-4069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
.|||+|+||||||||+|+|+|++ +.|++.||||||.+...+.+. +.++.|+||||+++..+...++. .+.++.+
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~-~~V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~~~l~----~~~l~~i 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG----HRFLRHI 76 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH----HHHHHCC
T ss_conf 58998999998999999996787-603256665237447799936985699964886444554662248----9998613
Q ss_pred ECCEEEEEECCCCCCCHH-HHHHHHHHHHC------CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 012059984553212202-12232000000------35766558944223354155566654201333200488311123
Q gi|255764471|r 284 RTCETTIVLLDATIPFEK-QDLRIVDSVFN------TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~-qd~~i~~~i~~------~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
++||++++|+|++..... ++...+...++ .+||+++|+||||+++++.. .+.. .+.+....+.|++||
T Consensus 77 ~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~-~~~~----~~~~~~~~~~~vi~i 151 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELL----KELLKELWGKPVFPI 151 (170)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHH-HHHH----HHHHHHCCCCCEEEE
T ss_conf 34561799998998789899999999999982744403865067762024283563-8999----999985699958999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 453334858999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~ 374 (470)
||++|.|+++|++.+.++
T Consensus 152 SA~~g~gi~~L~~~I~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 754797999999999966
No 47
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=1.3e-33 Score=245.36 Aligned_cols=158 Identities=28% Similarity=0.345 Sum_probs=122.3
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCE
Q ss_conf 64035642567887652012110002456654202311420340699981711044444300011100012100120120
Q gi|255764471|r 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 (470)
Q Consensus 208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~ad 287 (470)
|+|+||||||||+|+|+|+ +++||+.||||||.+...+.+++.+|.|+||||++..... ...|.+ .++.-..+.||
T Consensus 1 ivG~pNvGKSTL~N~L~g~-~~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~-~~~e~i--~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY-SEDEKV--ARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHHCC-CCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCC-CHHHHH--HHHHHHHCCCC
T ss_conf 9798988899999999599-8646178982763478899629937999979874125641-356789--99999851787
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 59984553212202122320000003576655894422335415556665420133320048831112345333485899
Q gi|255764471|r 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 (470)
Q Consensus 288 vvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l 367 (470)
++++|+|+++ -+++..+...+.+.++|+|+|+||||+++++.... ..+.+.+.+ +.|+++|||++|+|+++|
T Consensus 77 ~vl~vvD~~~--~~~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~--~~~~l~~~~----~~~ii~iSA~~g~Gi~~L 148 (158)
T cd01879 77 LIVNVVDATN--LERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI--DLDKLSELL----GVPVVPTSARKGEGIDEL 148 (158)
T ss_pred CEEEEEECCH--HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHH--HHHHHHHHC----CCCEEEEECCCCCCHHHH
T ss_conf 1799977740--67768999999865998899940277655225466--799999871----994899987789799999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|255764471|r 368 MVSVLEINKL 377 (470)
Q Consensus 368 ~~~i~~~~~~ 377 (470)
++.+.+++++
T Consensus 149 ~~~i~el~~k 158 (158)
T cd01879 149 KDAIAELAEK 158 (158)
T ss_pred HHHHHHHHCC
T ss_conf 9999998675
No 48
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00 E-value=2.6e-32 Score=236.68 Aligned_cols=157 Identities=27% Similarity=0.356 Sum_probs=119.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989-9899999658842076368999999999999987
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.|||+|+||||||||||+|+|.+.+ |+++||||||.+.+.+.+. +.+|.|+||||+.+..+. ...+..+.++.+++
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~--~~~l~~~~l~~i~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCC--CCCHHHHHHHCCCC
T ss_conf 5899899999899999999678760-32566652374477999369856999648864445546--62248999861334
Q ss_pred CCEEEEEECCCCCCCHHH--HHHHHHHHC-----CCCCCCCCHHHHCCCHHHHHH---HHH-HHHCCCCCEEEHHHCCCC
Q ss_conf 798999975988776234--455533210-----233222205652230121001---245-531222201001110222
Q gi|255764471|r 83 AHLILFLIDSKAGITPYD--HAITSFLRK-----KNIPIIIVSNKMDTRIAQRNF---YEI-YSLDFKEIVEISAEHDLG 151 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D--~~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~---~e~-~~lg~~~~i~iSA~~g~G 151 (470)
||+++||+|+.....+.+ +.+.+.|.. .++|+++|+||+|....++.. .++ ..+.+.++++|||++|.|
T Consensus 79 advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 56179999899878989999999999998274440386506776202428356389999999856999589997547979
Q ss_pred CHHHHHHHHHHH
Q ss_conf 014799999986
Q gi|255764471|r 152 TSELHSVIFKIF 163 (470)
Q Consensus 152 i~~L~~~i~~~~ 163 (470)
+++|++.|.+.+
T Consensus 159 i~~L~~~I~~~L 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999669
No 49
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.98 E-value=8.2e-33 Score=240.07 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=122.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHCCCHHHH---HHHHHHHHCCCCCEEEHHHCCCCCHHHHHHH
Q ss_conf 989999759887762344555332102-332222056522301210---0124553122220100111022201479999
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDTRIAQR---NFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~~-~~~~ilv~NK~D~~~~~~---~~~e~~~lg~~~~i~iSA~~g~Gi~~L~~~i 159 (470)
|+|+||+|||.++++.|.++.+.+++. +||+++|+||+|+...+. -..++++++...++++||.|+.|+.++.+.+
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~~~~~~~~w~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~ 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHH
T ss_conf 98999996879999889999999986589948999767345898999999999996299851671102674568899999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99861012345112210000111111222111233433234443038864035642567887652012110002456654
Q gi|255764471|r 160 FKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 (470)
Q Consensus 160 ~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr 239 (470)
...+....... ........+++++|+|+||||||||+|+|+|++|++||+.|||||
T Consensus 81 ~~~~~~~~~~~------------------------~~~~~~~~~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTr 136 (155)
T cd01849 81 TKQTNSNLKSY------------------------AKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTT 136 (155)
T ss_pred HHHHHHHHHHH------------------------HHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE
T ss_conf 98715666555------------------------430245566089998777744778999984785062669998383
Q ss_pred HCCCCEEEECCEEEEEEECHHC
Q ss_conf 2023114203406999817110
Q gi|255764471|r 240 DSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 240 D~i~~~~~~~~~~~~liDTaGi 261 (470)
|+++..+. ..+.|+|||||
T Consensus 137 d~~~i~~~---~~~~liDTpGi 155 (155)
T cd01849 137 SQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred CEEEEEEC---CCEEEEECCCC
T ss_conf 55999968---99899979299
No 50
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.97 E-value=2e-32 Score=237.44 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=120.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCC-CCHHHHHHCCCCCEEE
Q ss_conf 388640356425678876520121100024566542023114203406999817110444443-0001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~-~~~~E~~s~~~t~~~i 283 (470)
.|||+|+||||||||+|+|+|++.+ |++.||||||.+...+++++.++.|+||||+.++... ...+|+.++ .++
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie~~~~----~~l 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAI----TAL 76 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH----HHH
T ss_conf 7999889998899999999589860-23758723574368999837276872488655674788889999999----999
Q ss_pred EC-CEEEEEECCCCCCC---HHHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 01-20599845532122---0212232000000--357665589442233541555666542013332004883111234
Q gi|255764471|r 284 RT-CETTIVLLDATIPF---EKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 284 ~~-advvi~viDa~~~~---~~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
+. +|++++|+|+++.. .+++.+++..+.+ .++|+++|+||||+++.+.. .+..+. ....+.++++||
T Consensus 77 ~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~--~~~~~~-----~~~~~~~vi~IS 149 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL--SEIEEE-----EELEGEEVLKIS 149 (168)
T ss_pred HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHH-----HHCCCCCEEEEE
T ss_conf 8357768999968876784899999999987765258887999947534581007--999999-----970899889998
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 53334858999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~ 374 (470)
|++|.|+++|++.+.++
T Consensus 150 A~~g~Gi~~L~~~i~el 166 (168)
T cd01897 150 TLTEEGVDEVKNKACEL 166 (168)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 15896999999999996
No 51
>PRK04213 GTP-binding protein; Provisional
Probab=99.97 E-value=6.5e-32 Score=233.99 Aligned_cols=170 Identities=23% Similarity=0.316 Sum_probs=125.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCC----CCCCHHHHHHCCCCC
Q ss_conf 3886403564256788765201211000245665420231142034069998171104444----430001110001210
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS----RITESLEQKTVKKSM 280 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~----~~~~~~E~~s~~~t~ 280 (470)
.|||+||||||||||+|+|+|++ +.||+.||||||.+. ++..++.|+||||+.-.. +..+.+.........
T Consensus 3 ~VaivGRpNVGKSTL~N~L~g~k-~~vs~~pg~Tr~~~~----~~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~~~ 77 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALTGKK-VRVGKRPGVTLKPNE----YDWGDFILVDLPGFGFMSGVPKKVQERIKDEIVHYIE 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCEEEEEEE----EECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79997699988999999996898-513489964873458----8508899999999622245888899999999999999
Q ss_pred EEEECCEEEEEECCCCCC-----------CHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 012012059984553212-----------202122320000003576655894422335415556665420133320048
Q gi|255764471|r 281 QSVRTCETTIVLLDATIP-----------FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~-----------~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
.+.+.+|++++|+|++.+ .+..|..+++++.+.++|+++|+||||+++++......+.+.+....++..
T Consensus 78 ~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~~~~~ 157 (195)
T PRK04213 78 DNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIKNSEEVLDEIAERLGLYPPWRQ 157 (195)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 98851789999995786544211234456777789999999874998799998733058778889999999825761565
Q ss_pred CC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 83-11123453334858999999999998414
Q gi|255764471|r 350 DI-YINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 350 ~~-~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
+. .++++||+++ |+++|.+.|.+......+
T Consensus 158 ~~~~iv~iSakk~-Gid~L~~~I~~~L~E~~~ 188 (195)
T PRK04213 158 WLDIIAPISAKKG-GIEALKGLINKRLREFKR 188 (195)
T ss_pred CCCEEEEEECCCC-CHHHHHHHHHHHCHHHCC
T ss_conf 6987999845779-999999999996755374
No 52
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.97 E-value=9.1e-31 Score=226.28 Aligned_cols=153 Identities=30% Similarity=0.347 Sum_probs=98.4
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 971898878889999858850102589853022389999989-9899999658842076368999999999999987798
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHL 85 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~ 85 (470)
|||+||||||||||+|+|.+. .|+++||||||.+.|.+.+. +.++.|+||||+...... ...+.++.+.++++||+
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~-~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~--~~~~~~~~l~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-EEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHH--HHHHHHHHHHHHHCCCE
T ss_conf 969998889999999968996-030789967612467999479966999957875457337--87899999987410889
Q ss_pred EEEEECCCCCCCHHHHHHH-------HHH----------HCCCCCCCCCHHHHCCCHHHHHHH----HHHHHCCCCCEEE
Q ss_conf 9999759887762344555-------332----------102332222056522301210012----4553122220100
Q gi|255764471|r 86 ILFLIDSKAGITPYDHAIT-------SFL----------RKKNIPIIIVSNKMDTRIAQRNFY----EIYSLDFKEIVEI 144 (470)
Q Consensus 86 il~vvD~~~g~~~~D~~i~-------~~l----------r~~~~~~ilv~NK~D~~~~~~~~~----e~~~lg~~~~i~i 144 (470)
++||+|+.......+..+. ..| ...++|+++|+||+|....+.... .+......++++|
T Consensus 78 il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~i 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999898765545445899999999999971156655543269719999686034700315999999974689958999
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 111022201479999998
Q gi|255764471|r 145 SAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 145 SA~~g~Gi~~L~~~i~~~ 162 (470)
||++|.|+++|++.|.+.
T Consensus 158 SA~~~~gi~~L~~~i~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 777887999999999965
No 53
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.97 E-value=2.2e-31 Score=230.41 Aligned_cols=156 Identities=27% Similarity=0.377 Sum_probs=118.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEEEEEEECHH-CCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420-340699981711-044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAG-MRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~~~liDTaG-irkk~~~~~~~E~~s~~~t~~ 281 (470)
..|||+|+||||||||+|+|+|++ ++|++.||||+|+....+.+ ++.+|.|+|||| ||.-. .+-+|.+ ..|+.
T Consensus 42 p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p--~~lie~~--~~tle 116 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAF--RSTLE 116 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC--HHHHHHH--HHHHH
T ss_conf 879998899998999999994899-634156776457636689956997799983686446783--7899999--99999
Q ss_pred EEECCEEEEEECCCCCCCHHHH----HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212----232000000357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD----LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd----~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
+++.||++++|+|++++...++ ..+++.+...++|+++|+||||++++.... ..+. ....++++||
T Consensus 117 ~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~-~~~~---------~~~~~~i~IS 186 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERLE---------AGRPDAVFIS 186 (204)
T ss_pred HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH-HHHH---------HCCCCEEEEE
T ss_conf 99739899999979985366779999999998065557607888670479957589-9997---------0899879998
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 53334858999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~ 374 (470)
|++|.|+++|.+.+.+.
T Consensus 187 A~~g~Gid~L~~~I~e~ 203 (204)
T cd01878 187 AKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 86894999999999955
No 54
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.97 E-value=5.9e-31 Score=227.55 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=116.9
Q ss_pred HHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCHHHHCCCHHHHHHHHHHHHC--CCC-CEEEHHHCC
Q ss_conf 99999987798999975988776234455533210--2332222056522301210012455312--222-010011102
Q gi|255764471|r 75 QTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMDTRIAQRNFYEIYSLD--FKE-IVEISAEHD 149 (470)
Q Consensus 75 ~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~--~~~~~ilv~NK~D~~~~~~~~~e~~~lg--~~~-~i~iSA~~g 149 (470)
|.++++++||+||+|+|||.+++..|.++.++||+ .+||+++|+||+|+.........+..++ +.. .+..|+.++
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~~~~~~~s~~~~ 80 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 98897875999999988988888789899999875379997899998944798789999999864889739999532386
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 22014799999986101234511221000011111122211123343323444303886403564256788765201211
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ 229 (470)
.|..+|++.+.+..... .....++++++|+||||||||+|+|+|++++
T Consensus 81 ~~~~~l~~~l~~~~~~~--------------------------------~~~~~i~v~ivG~PNVGKSSlIN~L~g~k~~ 128 (157)
T cd01858 81 FGKGSLIQLLRQFSKLH--------------------------------SDKKQISVGFIGYPNVGKSSIINTLRSKKVC 128 (157)
T ss_pred CCHHHHHHHHHHHHHHC--------------------------------CCCCCEEEEEEECCCCCHHHHHHHHHCCCEE
T ss_conf 46899999999876513--------------------------------5556469999825885336889887267358
Q ss_pred CCHHHHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf 00024566542023114203406999817110
Q gi|255764471|r 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 230 ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
+||++|||||+.. +-.-+..+.|+||||+
T Consensus 129 ~vs~~PG~Tr~~q---~i~~~~~i~liDTPGi 157 (157)
T cd01858 129 KVAPIPGETKVWQ---YITLMKRIYLIDCPGV 157 (157)
T ss_pred EECCCCCEEEEEE---EEEECCCEEEEECCCC
T ss_conf 8659883377779---9996899999969099
No 55
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.97 E-value=3.4e-31 Score=229.16 Aligned_cols=160 Identities=24% Similarity=0.303 Sum_probs=116.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHH----------------HHHHHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 03886403564256788765201211000245----------------66542023114203406999817110444443
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS----------------GITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~----------------GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
.+|||+|+||+|||||+|+|+++..++.+... |.|+|.....+++++.+|.|+||||.
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh------ 77 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGH------ 77 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCC------
T ss_conf 78999938994499999999715487654643100333365588885782698769999608936899989987------
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH--HHHHHHHHHCCCCC
Q ss_conf 0001110001210012012059984553212202122320000003576655894422335415--55666542013332
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRTKAIKNL 345 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~--~~~~~~~~~~~~~~ 345 (470)
+.|. ..+.++++.||++++|+||.+|+..|+++++.++.+.++|+|+++||||++++.. ...+++...+...+
T Consensus 78 ----~~f~-~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~ 152 (185)
T pfam00009 78 ----VDFT-KEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKY 152 (185)
T ss_pred ----CCHH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ----1439-99999986465642999867685323099999999828987999977327776769999999999988873
Q ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -00488311123453334858999999999
Q gi|255764471|r 346 -PQIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 346 -~~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
....++|++||||++|.|+++|++.+...
T Consensus 153 ~~~~~~~pivpiSA~~G~gv~~Ll~~i~~~ 182 (185)
T pfam00009 153 GFGGETIPVIPGSALTGEGIDTLLEALDLY 182 (185)
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 248998869996789997989999999977
No 56
>KOG1191 consensus
Probab=99.97 E-value=2.6e-30 Score=223.20 Aligned_cols=164 Identities=33% Similarity=0.438 Sum_probs=136.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
+.|||+||||||||||.|+|++.+++|||+.||||||.++..++.+|.++.|+||+|+.+...+.++..-.+++..+++.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72899769987788999887507744767899964100122763087589997341310026870677768999988765
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCC------------CCCCCCCHHHHCCCHH-HHHHH-H--HHH-HC--CCCC-E
Q ss_conf 7989999759887762344555332102------------3322220565223012-10012-4--553-12--2220-1
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKK------------NIPIIIVSNKMDTRIA-QRNFY-E--IYS-LD--FKEI-V 142 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~------------~~~~ilv~NK~D~~~~-~~~~~-e--~~~-lg--~~~~-i 142 (470)
||+++||+|+-+..+..|..+++.|... .+++++++||+|.... ....+ . +-+ .| --++ .
T Consensus 349 advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~ 428 (531)
T KOG1191 349 ADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVV 428 (531)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCEECCCCCCCCCCCEEE
T ss_conf 47799996330033325328999988742555897044434623788610221576644567740023533576663378
Q ss_pred EEHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 001110222014799999986101
Q gi|255764471|r 143 EISAEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 143 ~iSA~~g~Gi~~L~~~i~~~~~~~ 166 (470)
.+|+.+++|+..|.+++...+...
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191 429 EVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 864120044899999999999875
No 57
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.97 E-value=5.9e-31 Score=227.56 Aligned_cols=157 Identities=23% Similarity=0.273 Sum_probs=118.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC--CCCHHHHHHHHHCCCCEEEE-CCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 388640356425678876520121--10002456654202311420-340699981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNR--LLTGSQSGITRDSVSISWNW-KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r--~ivs~~~GtTrD~i~~~~~~-~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
-||++|+||+|||||+|+|+|.+. ......+|+|+|.....+.+ +++.+.|+|||| ++.|. ...++
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPG----------h~~~~-~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPG----------HEKFI-KNMLA 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCC----------HHHHH-HHHHH
T ss_conf 99999268872999999984964663333334863798546878648998999994878----------79999-99999
Q ss_pred EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCC
Q ss_conf 12012059984553212202122320000003576-655894422335415556665420133320--048831112345
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRTKAIKNLP--QIGDIYINTISG 358 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~--~~~~~~i~~iSA 358 (470)
++..+|++++|+||++|+.+|+..++..+...+.| +|+|+||||+++++. .....+++.+.+. ++.++|+++|||
T Consensus 71 ~~~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~--~~~~~~~i~~~l~~~~~~~~pii~iSA 148 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW--LELVEEEIRELLAGTFLADAPIFPVSA 148 (164)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 874267258998617788888999999998738872787346342579789--999999999999743999982999469
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 3334858999999999
Q gi|255764471|r 359 RTGEGLDDLMVSVLEI 374 (470)
Q Consensus 359 ~~g~gi~~l~~~i~~~ 374 (470)
++|+|+++|+++|.++
T Consensus 149 ~tG~Gi~eL~~~I~el 164 (164)
T cd04171 149 VTGEGIEELKEYLDEL 164 (164)
T ss_pred CCCCCHHHHHHHHHHC
T ss_conf 8982999999999849
No 58
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.97 E-value=4.6e-31 Score=228.24 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=115.7
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 640356425678876520121100024566542023114203-4069998171104444430001110001210012012
Q gi|255764471|r 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
|+|+||||||||+|+|+|.+ +.|++.||||||.+...+.+. +.++.|+||||+.++.+..... ..+.++++++|
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~-~~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~----~~~~l~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK-PKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL----GNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH----HHHHHHHHHCC
T ss_conf 96999888999999996899-60307899676124679994799669999578754573378789----99999874108
Q ss_pred EEEEEECCCCCCCHHHHH------HHHH-----------HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 059984553212202122------3200-----------00003576655894422335415556665420133320048
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDL------RIVD-----------SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~------~i~~-----------~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
|++++|+|+++....++. +.++ .....+||+++|+||||+++++... +.. ...+....
T Consensus 76 d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~-~~~----~~~~~~~~ 150 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE-EEL----VRELALEE 150 (176)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHH-HHH----HHHHHHCC
T ss_conf 8999999898765545445899999999999971156655543269719999686034700315-999----99997468
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8311123453334858999999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
+.++++|||++|.|+++|.+.+.+.
T Consensus 151 ~~~ii~iSA~~~~gi~~L~~~i~~~ 175 (176)
T cd01881 151 GAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9958999777887999999999965
No 59
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.96 E-value=1.2e-29 Score=218.80 Aligned_cols=153 Identities=29% Similarity=0.389 Sum_probs=126.7
Q ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHHCCEEE
Q ss_conf 18988788899998588501025898530223899999899899999658842076368-99999999999998779899
Q gi|255764471|r 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS-IAKQMNDQTELAINEAHLIL 87 (470)
Q Consensus 9 G~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~-~~~~i~~~~~~ai~~aD~il 87 (470)
|.||||||||||+|||.+.+ |+|+||+|-|+.+|...++|+++.+||+||++.....+ ++|++.+ -+..-+++|+|+
T Consensus 1 GNPNVGKStlFN~LTG~~~~-vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~-dyl~~e~~DLv~ 78 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQK-VGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVAR-DYLLNEKPDLVV 78 (733)
T ss_pred CCCCCHHHHHHHHHHCCCEE-EEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHH-HHHHCCCCCEEE
T ss_conf 99981589999874158707-8735887078778897524627899844873005899874279998-997538996799
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHH----HHHCCCCCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 9975988776234455533210233222205652230121001245----531222201001110222014799999986
Q gi|255764471|r 88 FLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 88 ~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~----~~lg~~~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
.||||.. .+-...+.=+|...+.|.|+|+|++|..+.+...-|- ..||. +++|+||..|.|+.+|.++|...-
T Consensus 79 nVVDA~n--LERnL~LTLQL~E~G~p~i~~LN~~DeA~k~GI~Id~~~Lee~LGv-PVv~~~A~~g~G~~~L~~~i~~v~ 155 (733)
T TIGR00437 79 NVVDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATEGRGIEELKDAIREVA 155 (733)
T ss_pred EEECHHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECHHHHHHHCCC-CEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 9725667--7789999999997162585687267899772963125777543386-525653210577899999999986
Q ss_pred HHC
Q ss_conf 101
Q gi|255764471|r 164 KQK 166 (470)
Q Consensus 164 ~~~ 166 (470)
+.+
T Consensus 156 ~~K 158 (733)
T TIGR00437 156 DKK 158 (733)
T ss_pred HCC
T ss_conf 105
No 60
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=6.5e-29 Score=213.78 Aligned_cols=150 Identities=23% Similarity=0.355 Sum_probs=86.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---EECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999---9899899999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA---IINGVIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~---~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
|+|||+|+||+|||||+|+|++.+.+ ....+|+|++.....+ .+++.+|.|+||||.. .+.. + ...+
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~-----~f~~-~---~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE-----AFTN-M---RARG 70 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCH-----HHHH-H---HHHH
T ss_conf 98999948998598999998586750-45169816871539999882588718999899816-----7799-9---9999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHHHHHHH---------CCCCCEEEHHHC
Q ss_conf 987798999975988776234455533210233222205652230121--001245531---------222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFYEIYSL---------DFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~e~~~l---------g~~~~i~iSA~~ 148 (470)
...||++++|+|+.+|+.+++.+++++++..++|+++|+||+|....+ ....+.+++ +.-+++||||++
T Consensus 71 ~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~t 150 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCC
T ss_conf 86268899998646675458999999998769978999989308987989999999997545245528987599998999
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|+++|++.|...
T Consensus 151 G~gi~~L~~~i~~~ 164 (168)
T cd01887 151 GEGIDDLLEAILLL 164 (168)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 98999999999999
No 61
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.96 E-value=7.1e-30 Score=220.24 Aligned_cols=158 Identities=22% Similarity=0.338 Sum_probs=112.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHH---------------HHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCC
Q ss_conf 388640356425678876520121100024---------------56654202311420340699981711044444300
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQ---------------SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE 269 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~---------------~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~ 269 (470)
+|||+|++|+|||||+|+|+++...+.++. .|+|+|+....++++++.|.|+||||
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPG--------- 71 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPG--------- 71 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCC---------
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998---------
Q ss_pred HHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH--HHHHHHHHHHCCC----
Q ss_conf 0111000121001201205998455321220212232000000357665589442233541--5556665420133----
Q gi|255764471|r 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK--LNLLQDLRTKAIK---- 343 (470)
Q Consensus 270 ~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~--~~~~~~~~~~~~~---- 343 (470)
++.|. ..+.+++..||++++|+||.+|+..|++.+++++.+.++|+++++||||++++. ....+++.+.+..
T Consensus 72 -h~~f~-~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~ 149 (189)
T cd00881 72 -HEDFS-SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred -CHHHH-HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf -18899-9999998646856999987989987899999999976998799998971877562999999999998753210
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----320048831112345333485899999999
Q gi|255764471|r 344 -----NLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 344 -----~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.+.+....||+|+||++|.|+++|++++.+
T Consensus 150 ~~~~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~ 184 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 23211012588775999888678697999999997
No 62
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.96 E-value=4.1e-29 Score=215.16 Aligned_cols=156 Identities=27% Similarity=0.362 Sum_probs=127.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC----HHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076----36899999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK----NCSIAKQMNDQTEL 78 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~----~~~~~~~i~~~~~~ 78 (470)
-+||++|.||||||||||+|+|.+.. |+|+||+|-|+.+|.+.++|.++.++|+||++.-. +..+++++.+....
T Consensus 4 i~IALvGNPN~GKSTLFN~LTG~~q~-VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~ll 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 56998889987899999998689983-57899764742389999689469999799778699999777730899999861
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHH----HHHCCCCCEEEHHHCCCCCHH
Q ss_conf 9987798999975988776234455533210233222205652230121001245----531222201001110222014
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEI----YSLDFKEIVEISAEHDLGTSE 154 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~----~~lg~~~~i~iSA~~g~Gi~~ 154 (470)
. +++|+|+.|+||.. .+....+.-+|...+.|+++++|++|.........|. ..||. +++++||.+|+|+++
T Consensus 83 ~-~~pDvvvnVvDAtn--LeRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGv-PVV~~~A~~g~Gi~e 158 (772)
T PRK09554 83 S-GDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRGIEA 158 (772)
T ss_pred C-CCCCEEEEEEECCC--HHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHHHHHCC-CEEEEEECCCCCHHH
T ss_conf 3-99989999801687--5442899999997499989998779989887793289999998589-989998278879999
Q ss_pred HHHHHHHHH
Q ss_conf 799999986
Q gi|255764471|r 155 LHSVIFKIF 163 (470)
Q Consensus 155 L~~~i~~~~ 163 (470)
|.+.+.+.-
T Consensus 159 L~~ai~~~~ 167 (772)
T PRK09554 159 LKLAIDRYK 167 (772)
T ss_pred HHHHHHHHH
T ss_conf 999999752
No 63
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.96 E-value=6.4e-29 Score=213.82 Aligned_cols=89 Identities=30% Similarity=0.390 Sum_probs=76.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|||||+||||||||||+|+|.+. .|+++|+||||.+.|.+.+.+.+|.|+||||+..+.... ..+..+.+..+..|
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~~-~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g--~g~g~~~l~~~r~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHC
T ss_conf 599999999999999999978995-436989787574777999899899999673002463333--20689999998758
Q ss_pred CEEEEEECCCCC
Q ss_conf 989999759887
Q gi|255764471|r 84 HLILFLIDSKAG 95 (470)
Q Consensus 84 D~il~vvD~~~g 95 (470)
|+++||+|+.+.
T Consensus 79 D~il~VvD~~~~ 90 (233)
T cd01896 79 DLILMVLDATKP 90 (233)
T ss_pred CEEEEEEECCCC
T ss_conf 999999847982
No 64
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.96 E-value=3.4e-29 Score=215.71 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=105.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95089997189887888999985885010258985302238999998998999996588420763689999999999999
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
|- +||||||||||||||+|+|+|++ |++..+++||- +..+|||||++. .+..+.+. ...+.
T Consensus 1 Mk-kVaivGrpNvGKSTLlN~L~g~~--i~~~K~qtt~~-----------~~~~IDTPG~~~-~~~~~~~~----~~~~~ 61 (143)
T pfam10662 1 MK-KIMLIGRSGCGKTTLTQALNGEE--LKYKKTQAIEF-----------SDNMIDTPGEYL-ENRRFYSA----LIVTA 61 (143)
T ss_pred CC-EEEEECCCCCCHHHHHHHHCCCC--EEECCCEEEEE-----------CCCEEECCCCCC-CCHHHHHH----HHHHH
T ss_conf 97-59998999999999999975994--45178707985-----------574899987665-62899999----99999
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HH-HHHHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 87798999975988776234455533210233222205652230121001---24-553122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YE-IYSLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e-~~~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
.+||+++||+|+.+.....+..+. +..++|+++|+||+|..+.++.. .+ +..+|+.+++||||.+|.|+++|+
T Consensus 62 ~daDvil~vvDa~~~~~~~~~~~~---~~~~kpvIlViNKiD~~~~~~~l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~ 138 (143)
T pfam10662 62 ADADVIALVQDATEPWSVFPPGFA---SMFNKPVIGIITKIDLAKDEANIEMVEEWLNNAGAEKIFEVSAVTNEGIDELF 138 (143)
T ss_pred HHCCEEEEEEECCCCCCCCCHHHH---HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 649999999877886675687789---75479889999802245756678999999975899879998898998999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|255764471|r 157 SVIF 160 (470)
Q Consensus 157 ~~i~ 160 (470)
+.+.
T Consensus 139 ~~l~ 142 (143)
T pfam10662 139 AYLE 142 (143)
T ss_pred HHHH
T ss_conf 9974
No 65
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=2.1e-29 Score=217.10 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=122.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE---EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 388640356425678876520121100024566542023114---20340699981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW---NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~---~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
-|||+|+||+|||||+|+|.+.+.. +.+.+|+|++.-...+ .+++..|.|+|||| +|.|+..++.
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPG----------h~~f~~~~~~- 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG----------HEAFTNMRAR- 69 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCC----------CHHHHHHHHH-
T ss_conf 8999948998598999998586750-451698168715399998825887189998998----------1677999999-
Q ss_pred EEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH-HHHHHHH-CCCCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212232000000357665589442233541555-6665420-1333200488311123453
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTK-AIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~-~~~~~~~-~~~~~~~~~~~~i~~iSA~ 359 (470)
+...||++++|+||.+|+.+|+..++..+.+.++|+++++||||+++..... ..++.+. ......+..+.|++|+||+
T Consensus 70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~ 149 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECC
T ss_conf 98626889999864667545899999999876997899998930898798999999999754524552898759999899
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 334858999999999998
Q gi|255764471|r 360 TGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 360 ~g~gi~~l~~~i~~~~~~ 377 (470)
+|.|+++|++++....+.
T Consensus 150 tG~gi~~L~~~i~~~a~~ 167 (168)
T cd01887 150 TGEGIDDLLEAILLLAEK 167 (168)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 998999999999999715
No 66
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.96 E-value=1.3e-28 Score=211.71 Aligned_cols=155 Identities=23% Similarity=0.233 Sum_probs=123.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC----------------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCH
Q ss_conf 50899971898878889999858850102589----------------85302238999998998999996588420763
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH----------------PGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~----------------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~ 65 (470)
+..|||+|+||+|||||+|+|++...++.+.. -|.|.|.....++|.+++|.|+||||...
T Consensus 3 ~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 79 (185)
T pfam00009 3 HRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVD--- 79 (185)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCC---
T ss_conf 67899993899449999999971548765464310033336558888578269876999960893689998998714---
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH---HHHHHH-----HHC
Q ss_conf 689999999999999877989999759887762344555332102332222056522301210---012455-----312
Q gi|255764471|r 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR---NFYEIY-----SLD 137 (470)
Q Consensus 66 ~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~---~~~e~~-----~lg 137 (470)
+... +..++..||++++||||.+|+.+++++++..+++.++|+++|+||+|....+. ...++. ..+
T Consensus 80 --f~~~----~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~ 153 (185)
T pfam00009 80 --FTKE----MIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYG 153 (185)
T ss_pred --HHHH----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --3999----9999864656429998676853230999999998289879999773277767699999999999888732
Q ss_pred ----CCCCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf ----2220100111022201479999998610
Q gi|255764471|r 138 ----FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 138 ----~~~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
..+++||||++|.|+++|++.|...+|.
T Consensus 154 ~~~~~~pivpiSA~~G~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 154 FGGETIPVIPGSALTGEGIDTLLEALDLYLPS 185 (185)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 48998869996789997989999999977859
No 67
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=209.83 Aligned_cols=163 Identities=28% Similarity=0.378 Sum_probs=133.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95089997189887888999985885010258985302238999998998999996588420763689999999999999
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
|..+||++|.||||||||||+|+|.+.. |+|+||+|-++.+|....+|+++.++|+||++.....+.++.+.+.....
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~- 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE- 79 (653)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHC-
T ss_conf 8643898569985489999998566746-54789806998788997358548998689756588899208999999863-
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHH---HH-HHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 8779899997598877623445553321023322220565223012100124---55-3122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE---IY-SLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e---~~-~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
+.+|+++.|+||.. .+....+.-+|...++|+++++|++|..+......| +. .||. +++++||..|+|+++|+
T Consensus 80 ~~~D~ivnVvDA~n--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~LGv-PVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 80 GKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELK 156 (653)
T ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCC-CEEEEEECCCCCHHHHH
T ss_conf 89988999602323--7777899999998599859996127568864971269999998689-88998730588979999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999998610123
Q gi|255764471|r 157 SVIFKIFKQKYP 168 (470)
Q Consensus 157 ~~i~~~~~~~~~ 168 (470)
+++.+..+.+..
T Consensus 157 ~~i~~~~~~~~~ 168 (653)
T COG0370 157 RAIIELAESKTT 168 (653)
T ss_pred HHHHHHCCCCCC
T ss_conf 999874325564
No 68
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.96 E-value=3.3e-28 Score=208.98 Aligned_cols=157 Identities=25% Similarity=0.329 Sum_probs=117.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCC-HHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203-40699981711044444300-0111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITE-SLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~-~~E~~s~~~t 279 (470)
.-+.||+||+||+|||||+|+|+|++ ..+.|.+++|.|+....+.+. +.++.++||+|+-++ ... -+|.| ..|
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~Lt~~~-~~~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~--LP~~Li~aF--~sT 262 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAF--RAT 262 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCEEECCCCCCEEECCCCCEEEEEECCCHHHH--CCHHHHHHH--HHH
T ss_conf 99769996678877899999985177-6410343135367320488799976999815005630--886799999--999
Q ss_pred CEEEECCEEEEEECCCCCCCH-HHHH---HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220-2122---320000003576655894422335415556665420133320048831112
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE-KQDL---RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~-~qd~---~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
+..+..||++++|+|++++-. .|-. .++..+--.++|+|+|+||+|++++... ..+ ...++ ..++
T Consensus 263 Lee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~--~~~----~~~~~-----~~v~ 331 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI--ERL----EEGYP-----EAVF 331 (351)
T ss_pred HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH--HHH----HHCCC-----CEEE
T ss_conf 999985989999805888478999999999999769999988999967015895778--998----73799-----8799
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 3453334858999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~ 374 (470)
|||++|.|++.|.+.|.+.
T Consensus 332 ISA~~g~gi~~L~~~I~~~ 350 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 9689998999999999955
No 69
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.96 E-value=1.7e-28 Score=210.89 Aligned_cols=162 Identities=24% Similarity=0.383 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH--HHHHHHHCCCCCEEEHHHCC
Q ss_conf 9999999998779899997598877623445553321023322220565223012100--12455312222010011102
Q gi|255764471|r 72 MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN--FYEIYSLDFKEIVEISAEHD 149 (470)
Q Consensus 72 i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~--~~e~~~lg~~~~i~iSA~~g 149 (470)
..+|....++.+|+|+.|+|||.+++.....+.+++. +||.++|+||+|+...+.. ..++++....+++++||+++
T Consensus 11 a~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~~--~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~~~~~~~sa~~~ 88 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEQKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCC
T ss_conf 9999999987599999998677887868975999866--99679997343459999999999999843991898643074
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 22014799999986101234511221000011111122211123343323444303886403564256788765201211
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ 229 (470)
.|+.+|.+.+.+.+.+...... .......+++++|+|.||||||||+|+|.|++++
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~------------------------~~~~~~~~i~v~vVG~PNVGKSSlIN~L~~~k~~ 144 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLK------------------------AKGLLNRPIRAMIVGIPNVGKSTLINRLAGKKVA 144 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------------------------HCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEE
T ss_conf 5389999999999999888888------------------------5267778638999727987589999987367258
Q ss_pred CCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 000245665420231142034069998171104
Q gi|255764471|r 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 230 ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
.||+.||+||.. + .+.. +..+.++||||+-
T Consensus 145 ~v~~~PG~Tr~~-q-~i~l-~~~i~llDtPGvl 174 (276)
T TIGR03596 145 KVGNRPGVTKGQ-Q-WIKL-SDGLELLDTPGIL 174 (276)
T ss_pred EECCCCCCCCEE-E-EEEE-CCCEEEECCCCCC
T ss_conf 777965421025-8-9995-7977996688745
No 70
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=9.4e-28 Score=205.95 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=117.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010--258985302238999998-998999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAV--VGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~ai--v~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.||++|+||+|||||+|+|+|.+.+. .....|+|+|..+..+.+ +++++.|+||||.. .+... ...++
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh~-----~~~~~----~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----KFIKN----MLAGA 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCHH-----HHHHH----HHHHH
T ss_conf 9999926887299999998496466333333486379854687864899899999487879-----99999----99987
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHH------HHHHH-HHC--CCCCEEEHHHCCC
Q ss_conf 877989999759887762344555332102332-2220565223012100------12455-312--2220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRN------FYEIY-SLD--FKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~------~~e~~-~lg--~~~~i~iSA~~g~ 150 (470)
..||++++|||+.+|+.+++++.+..++..+.| +++|+||+|....+.. ..++. ..+ ..+++||||++|.
T Consensus 73 ~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~ 152 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 42672589986177888889999999987388727873463425797899999999999997439999829994698982
Q ss_pred CCHHHHHHHHH
Q ss_conf 20147999999
Q gi|255764471|r 151 GTSELHSVIFK 161 (470)
Q Consensus 151 Gi~~L~~~i~~ 161 (470)
|+++|++.|.+
T Consensus 153 Gi~eL~~~I~e 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999984
No 71
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=99.95 E-value=3.8e-28 Score=208.64 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH--HHHHHHHCCCCCEEEHHHC
Q ss_conf 99999999998779899997598877623445553321023322220565223012100--1245531222201001110
Q gi|255764471|r 71 QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN--FYEIYSLDFKEIVEISAEH 148 (470)
Q Consensus 71 ~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~--~~e~~~lg~~~~i~iSA~~ 148 (470)
...+|....++.+|+||.|+|||.+++..+..+.+++. +||.++|+||+|+...+.. ..++++.....++++||++
T Consensus 13 ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~~--~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~~~~~~~sa~~ 90 (282)
T PRK09563 13 KARREIKENLKKVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLVLNKSDLADPEVTKKWIEYFEEQGVKALAINAKE 90 (282)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999987699999997654776758875999976--8976999755548899999999999970499569974667
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 22201479999998610123451122100001111112221112334332344430388640356425678876520121
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r 228 (470)
+.|+..+.+.+.+.+.+..... ........+++++++|.||||||||+|+|.|+.+
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~------------------------~~~~~~~~~i~v~vvG~PNVGKSSlIN~L~~~k~ 146 (282)
T PRK09563 91 GQGVKKILKAAKKLGKEKNERR------------------------KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (282)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------------------------HHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 4338899999999999988888------------------------7516667863899970697767999998747705
Q ss_pred CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 1000245665420231142034069998171104
Q gi|255764471|r 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 229 ~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
+.||+.||+||.. + .+.. +..+.++||||+-
T Consensus 147 ~~v~~~PG~Tk~~-q-~v~l-~~~i~L~DtPGvl 177 (282)
T PRK09563 147 AKTGNRPGVTKSQ-Q-WIKL-GKGLELLDTPGIL 177 (282)
T ss_pred EEECCCCCCEEEE-E-EEEE-CCCEEEECCCCCC
T ss_conf 8767965410025-8-9995-7988996688745
No 72
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=2.7e-28 Score=209.58 Aligned_cols=133 Identities=22% Similarity=0.318 Sum_probs=101.8
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCHHHHCCCHHHHHH--HHHHHHCCCCCEEEHHHC
Q ss_conf 9999999987798999975988776234455533210--233222205652230121001--245531222201001110
Q gi|255764471|r 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMDTRIAQRNF--YEIYSLDFKEIVEISAEH 148 (470)
Q Consensus 73 ~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~--~~~~~ilv~NK~D~~~~~~~~--~e~~~lg~~~~i~iSA~~ 148 (470)
-+|..+++++||+||+|+|||.++++.+.++.+++++ .+||+++|+||+|+...+... .++++-......+.||.+
T Consensus 2 ~rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~~~~~w~~~~~~~~~~~~~~s~~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 18999999769999999989888876899999999984389957999865004999999999999984499489984267
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 22201479999998610123451122100001111112221112334332344430388640356425678876520121
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r 228 (470)
....++++|+||||||||+|+|.|+++
T Consensus 82 -----------------------------------------------------~~~~i~ivG~PNVGKSSlIN~L~g~k~ 108 (141)
T cd01857 82 -----------------------------------------------------ENATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred -----------------------------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCE
T ss_conf -----------------------------------------------------762689977888669999999858866
Q ss_pred CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf 100024566542023114203406999817110
Q gi|255764471|r 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 229 ~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
++||+.|||||+.-. ..-+..+.|+|||||
T Consensus 109 ~~v~~~PG~Tr~~~~---i~~~~~i~liDTPGi 138 (141)
T cd01857 109 VSVSATPGKTKHFQT---IFLTPTITLCDCPGL 138 (141)
T ss_pred EEECCCCCCCCCEEE---EEECCCEEEEECCCC
T ss_conf 876599941576689---996899999989886
No 73
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.95 E-value=9.7e-28 Score=205.87 Aligned_cols=155 Identities=24% Similarity=0.319 Sum_probs=115.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
+|+++|+||||||||+|+|+|++ +.|++.|+||+|++...+.++|.+|.|+||||+.+..+...+.- ...+..++
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g----~~~l~~~r 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRG----RQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH----HHHHHHHH
T ss_conf 59999999999999999997899-54369897875747779998998999996730024633332068----99999987
Q ss_pred CCEEEEEECCCCCCCHHHHH------------------------------------------HHHHHHH-C---------
Q ss_conf 12059984553212202122------------------------------------------3200000-0---------
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQDL------------------------------------------RIVDSVF-N--------- 312 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd~------------------------------------------~i~~~i~-~--------- 312 (470)
.||++++|+|++++....|. ..+..++ +
T Consensus 77 ~aD~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~ 156 (233)
T cd01896 77 TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred HCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 58999999847982667899999998605110357876257771358678604566666888999999998276764378
Q ss_pred ------------------CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ------------------35766558944223354155566654201333200488311123453334858999999999
Q gi|255764471|r 313 ------------------TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 313 ------------------~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
..+|+|+|+||+|++..+. .+.+ . ...++++|||.+|.|+++|.+.+.+.
T Consensus 157 i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee--~~~~----~------~~~~~i~ISA~~g~gld~L~~~I~~~ 224 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE--LDLL----A------RQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred ECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHH--HHHH----H------CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6057888898998735767673799997403699899--9986----4------67985999888898989999999998
Q ss_pred HH
Q ss_conf 99
Q gi|255764471|r 375 NK 376 (470)
Q Consensus 375 ~~ 376 (470)
..
T Consensus 225 L~ 226 (233)
T cd01896 225 LG 226 (233)
T ss_pred HC
T ss_conf 39
No 74
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.95 E-value=8.9e-27 Score=199.39 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=123.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCC---------------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHH
Q ss_conf 99971898878889999858850102589---------------853022389999989989999965884207636899
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNH---------------PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIA 69 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~---------------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~ 69 (470)
|+|+|++|+|||||+|+|++...++..+. .|+|+|.....++|.++.|.|+||||. ..+.
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh-----~~f~ 76 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-----EDFS 76 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCC-----HHHH
T ss_conf 89991799899999999997647235686258885057778886384132227999989989999969981-----8899
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH---HHHH----HHHHC-----
Q ss_conf 99999999999877989999759887762344555332102332222056522301210---0124----55312-----
Q gi|255764471|r 70 KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR---NFYE----IYSLD----- 137 (470)
Q Consensus 70 ~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~---~~~e----~~~lg----- 137 (470)
.. +..++..||++++||||.+|+.+++++++++++..++|+++|+||+|....+. ...+ +...+
T Consensus 77 ~~----~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~ 152 (189)
T cd00881 77 SE----VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99----99998646856999987989987899999999976998799998971877562999999999998753210232
Q ss_pred --------CCCCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf --------2220100111022201479999998610
Q gi|255764471|r 138 --------FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 138 --------~~~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
..+++|+||++|.|+++|++.+.+.+|.
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~ 188 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 110125887759998886786979999999976879
No 75
>PRK11058 putative GTPase HflX; Provisional
Probab=99.94 E-value=3.9e-26 Score=195.04 Aligned_cols=166 Identities=21% Similarity=0.193 Sum_probs=122.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 430388640356425678876520121100024566542023114203-4069998171104444430001110001210
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
....||++|.+|+|||||+|+|++++ ..+.|....|-|+....+... +.++.+.||-|+-++- -..-+|.| .-|+
T Consensus 196 ~~~~ValVGYTNAGKSTL~n~Lt~~~-v~~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~~L-P~~LveAF--~sTL 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAF--KATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHC-CHHHHHHH--HHHH
T ss_conf 99769997357777899987775288-76325450147862026786999869997150666519-89999999--9999
Q ss_pred EEEECCEEEEEECCCCCCC-HHHH---HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 0120120599845532122-0212---23200000035766558944223354155566654201333200488311123
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPF-EKQD---LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~-~~qd---~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
..+..||++++|+|++++- .+|- ..++..+--..+|.|+|+||+|++++...... .. ...++ ..++|
T Consensus 272 eEv~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~~~~---~~-~~~~p-----~~V~i 342 (426)
T PRK11058 272 QETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID---RD-EENKP-----IRVWL 342 (426)
T ss_pred HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH---HH-HCCCC-----CEEEE
T ss_conf 99963988999984999379999999999999759999977999977023896445566---65-33998-----77999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 453334858999999999998414
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
||++|.|++.|++.|.+.......
T Consensus 343 SA~tg~Gi~~L~~~I~~~L~~~~~ 366 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERLSGEVA 366 (426)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 789998999999999987033768
No 76
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.94 E-value=2.1e-27 Score=203.61 Aligned_cols=141 Identities=23% Similarity=0.291 Sum_probs=100.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
||||+||||||||||+|+|+|+ .+++..++||+- ...+|||||+.... ..+.. .-+.+..
T Consensus 3 kVaivGrpNvGKSTLlN~L~g~--~i~~~K~qtt~~-----------~~~~IDTPG~~~~~---~~~~~----~~~~~~~ 62 (143)
T pfam10662 3 KIMLIGRSGCGKTTLTQALNGE--ELKYKKTQAIEF-----------SDNMIDTPGEYLEN---RRFYS----ALIVTAA 62 (143)
T ss_pred EEEEECCCCCCHHHHHHHHCCC--CEEECCCEEEEE-----------CCCEEECCCCCCCC---HHHHH----HHHHHHH
T ss_conf 5999899999999999997599--445178707985-----------57489998766562---89999----9999996
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 12059984553212202122320000003576655894422335415556665420133320048831112345333485
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi 364 (470)
+||++++|+||+++.+..+..++. ..++|+|+|+||+|+++++.. .+... +.+.++.+..+++|||++|.|+
T Consensus 63 daDvil~vvDa~~~~~~~~~~~~~---~~~kpvIlViNKiD~~~~~~~-l~~~~----~~~~~~~~~~i~~iSA~~g~Gi 134 (143)
T pfam10662 63 DADVIALVQDATEPWSVFPPGFAS---MFNKPVIGIITKIDLAKDEAN-IEMVE----EWLNNAGAEKIFEVSAVTNEGI 134 (143)
T ss_pred HCCEEEEEEECCCCCCCCCHHHHH---HCCCCEEEEEECCCCCCCHHH-HHHHH----HHHHHCCCCEEEEEECCCCCCH
T ss_conf 499999998778866756877897---547988999980224575667-89999----9997589987999889899899
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|255764471|r 365 DDLMVSVLE 373 (470)
Q Consensus 365 ~~l~~~i~~ 373 (470)
++|++.+.+
T Consensus 135 d~L~~~l~e 143 (143)
T pfam10662 135 DELFAYLEE 143 (143)
T ss_pred HHHHHHHHC
T ss_conf 999999749
No 77
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.93 E-value=3.5e-27 Score=202.15 Aligned_cols=154 Identities=25% Similarity=0.360 Sum_probs=123.3
Q ss_pred ECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC--CCCC-CCCHHHHHHCCCCCEEEECC
Q ss_conf 03564256788765201211000245665420231142034069998171104--4444-30001110001210012012
Q gi|255764471|r 210 GRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR--KPSR-ITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 210 G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir--kk~~-~~~~~E~~s~~~t~~~i~~a 286 (470)
|.||||||||+|+|+|++ ..|+|.||+|.|--+..+.++|+++.+||+||+- .... .++.+ .|..-.-+++
T Consensus 1 GNPNVGKStlFN~LTG~~-~~vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v-----~~dyl~~e~~ 74 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QKVGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKV-----ARDYLLNEKP 74 (733)
T ss_pred CCCCCHHHHHHHHHHCCC-EEEEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHH-----HHHHHHCCCC
T ss_conf 999815899998741587-0787358870787788975246278998448730058998742799-----9899753899
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 05998455321220212232000000357665589442233541555666542013332004883111234533348589
Q gi|255764471|r 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 287 dvvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~ 366 (470)
|+|+.|+||++ +.++ +.+.=++.|.|.|+|+++|+||..+++.-..+ .+.|+..-++|++++||..|.|+++
T Consensus 75 DLv~nVVDA~n-LERn-L~LTLQL~E~G~p~i~~LN~~DeA~k~GI~Id------~~~Lee~LGvPVv~~~A~~g~G~~~ 146 (733)
T TIGR00437 75 DLVVNVVDASN-LERN-LYLTLQLLELGIPMILALNLVDEAEKKGIRID------EEKLEERLGVPVVPTSATEGRGIEE 146 (733)
T ss_pred CEEEEEECHHH-HHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEC------HHHHHHHCCCCEEEEEEEECCCHHH
T ss_conf 67999725667-7789-99999999716258568726789977296312------5777543386525653210577899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|255764471|r 367 LMVSVLEINKL 377 (470)
Q Consensus 367 l~~~i~~~~~~ 377 (470)
|.++|.++.+.
T Consensus 147 L~~~i~~v~~~ 157 (733)
T TIGR00437 147 LKDAIREVADK 157 (733)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998610
No 78
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.93 E-value=3.5e-25 Score=188.59 Aligned_cols=161 Identities=26% Similarity=0.382 Sum_probs=126.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-HHHHHHHHHHHHHHH
Q ss_conf 5089997189887888999985885-01025898530223899999899899999658842076-368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK-NCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~-~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~i~~~~~~a 79 (470)
.|.||++||+|||||||+|+|+|++ .|-||.+||.||-..+-.+ ++ ++.|||.||++... .....+.+.+.....
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEE--CC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 967999816866689999999678635565799985423679983--58-579981799540328999999999999999
Q ss_pred HHH-C--CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH---HHHHH-HHCC---CC--CEEEHHH
Q ss_conf 987-7--9899997598877623445553321023322220565223012100---12455-3122---22--0100111
Q gi|255764471|r 80 INE-A--HLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN---FYEIY-SLDF---KE--IVEISAE 147 (470)
Q Consensus 80 i~~-a--D~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~---~~e~~-~lg~---~~--~i~iSA~ 147 (470)
++. + ..++.|+|++.++...|.++.++|+..+.|+++++||+|..+..+. +.... .+++ .. ++..|+.
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred HHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 96352224899999789998687999999999759986999971103774678889999999846898866439998654
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
.+.|+++|...|...+.+
T Consensus 181 ~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 181 KKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 544899999999998640
No 79
>COG2262 HflX GTPases [General function prediction only]
Probab=99.93 E-value=6.3e-25 Score=186.92 Aligned_cols=164 Identities=27% Similarity=0.327 Sum_probs=121.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCC-CHHHHHHCC
Q ss_conf 44430388640356425678876520121100024566542023114203-4069998171104444430-001110001
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRIT-ESLEQKTVK 277 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~-~~~E~~s~~ 277 (470)
...-..|+++|.+|+|||||+|+|++++ ..+.|.-.+|-|+....+.+. |+++.|.||-|.-+. .- .-++.| .
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AF--k 263 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAF--K 263 (411)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHCCC-EECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC--CCHHHHHHH--H
T ss_conf 1699758987323444999998872457-1304666421057404898079964998657567155--986799999--9
Q ss_pred CCCEEEECCEEEEEECCCCCCCHH-HH---HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 210012012059984553212202-12---23200000035766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFEK-QD---LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~~-qd---~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
.|+..+..||++++|+||+++--. |- ..++..+--..+|+|+|+||+|++.+.. ....+.. ..+ +.
T Consensus 264 sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~----~~~-----~~ 333 (411)
T COG2262 264 STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELER----GSP-----NP 333 (411)
T ss_pred HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH-HHHHHHH----CCC-----CE
T ss_conf 9898762277799974068851899999999999974889997899976410157322-2345663----489-----74
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1234533348589999999999984
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
++|||++|.|++.|.+.|.+.....
T Consensus 334 v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 334 VFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 8998066759899999999986312
No 80
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.93 E-value=3.6e-26 Score=195.28 Aligned_cols=163 Identities=23% Similarity=0.355 Sum_probs=124.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCC--CCCHH-HHHHCCC
Q ss_conf 43038864035642567887652012110002456654202311420340699981711044444--30001-1100012
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR--ITESL-EQKTVKK 278 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~--~~~~~-E~~s~~~ 278 (470)
+.++||++|.||||||||+|+|+|.. ..|++.||+|.|.-+..+.++|+.+.++|+||+---+- ..+++ |..+ .+
T Consensus 2 k~i~IALvGNPN~GKSTLFN~LTG~~-q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Va-r~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CH 79 (772)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHH-HH
T ss_conf 73569988899878999999986899-83578997647423899996894699997997786999997777308999-99
Q ss_pred CCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 10012012059984553212202122320000003576655894422335415556665420133320048831112345
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA 358 (470)
-+. =++.|+++.|+||++ +.+ .+.+.-++.|.|+|+|+++|++|..+++....+ .+.++..-++|++++||
T Consensus 80 ~ll-~~~pDvvvnVvDAtn-LeR-nLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID------~~~Ls~~LGvPVV~~~A 150 (772)
T PRK09554 80 YIL-SGDADLLINVVDASN-LER-NLYLTLQLLELGIPCIVALNMLDIAEKQNIRID------IDALSARLGCPVIPLVS 150 (772)
T ss_pred HHH-CCCCCEEEEEEECCC-HHH-HHHHHHHHHHCCCCEEEEEECHHHHHHCCCEEC------HHHHHHHHCCCEEEEEE
T ss_conf 861-399989999801687-544-289999999749998999877998988779328------99999985899899982
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 33348589999999999
Q gi|255764471|r 359 RTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 359 ~~g~gi~~l~~~i~~~~ 375 (470)
.+|+|+++|.+++.+..
T Consensus 151 ~~g~Gi~eL~~ai~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRYK 167 (772)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 78879999999999752
No 81
>KOG1423 consensus
Probab=99.92 E-value=1.3e-24 Score=184.88 Aligned_cols=178 Identities=21% Similarity=0.296 Sum_probs=101.9
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHH-C
Q ss_conf 234443038864035642567887652012110002456654202311420340699981711044444300011100-0
Q gi|255764471|r 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT-V 276 (470)
Q Consensus 198 ~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s-~ 276 (470)
.+..+.++||++|-||||||||.|.++|...+.||+.+.|||-.+...+.-...+..|+||||+--+.+....+...+ .
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred HHCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 11115789999708976545544576487212011566530201357871596589996487645334135678888765
Q ss_pred CCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCHHHHHH-----------HHHHHCCCC
Q ss_conf 1210012012059984553212202122320000003-5766558944223354155566-----------654201333
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-GHAVVLALNKWDMVSDKLNLLQ-----------DLRTKAIKN 344 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~-~k~~iiv~NK~Dli~~~~~~~~-----------~~~~~~~~~ 344 (470)
...++|++.||++++|+|++..=....-++++...+. ..|-++++||+|+++.+..... ..+.++++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 37898886388799998556776756807877789986187203304000221466776667760555100345658887
Q ss_pred CCCCC-------------CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 20048-------------83111234533348589999999999
Q gi|255764471|r 345 LPQIG-------------DIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 345 ~~~~~-------------~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
+.... +..++++||++|.|+++|-+.+....
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 35597433564324764531489984046667899999997237
No 82
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.91 E-value=3e-24 Score=182.34 Aligned_cols=165 Identities=23% Similarity=0.263 Sum_probs=121.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 388640356425678876520121100024566542023114203-4069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
-|++||.||||||||+|+|++.. ..|.+.|.||..+.-..+.+. +..|.+.|+|||-+..+...++- .+-+++|
T Consensus 160 DVgLVG~PNaGKSTLl~~is~A~-pkIa~YpFTTl~P~lGvv~~~d~~~~~iaDiPGlIegA~~g~GLG----~~FLrHi 234 (334)
T PRK12299 160 DVGLVGLPNAGKSTLISSVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLG----HRFLKHI 234 (334)
T ss_pred CCEEEECCCCCHHHHHHHHHCCC-CCCCCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCH----HHHHHHH
T ss_conf 30146369874669999876476-433578730038754799946886789986674335523477747----8998766
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHH-HHHC-----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0120599845532122021223200-0000-----357665589442233541555666542013332004883111234
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQDLRIVD-SVFN-----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd~~i~~-~i~~-----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
++|.+.++|+|++..-.-+|..+++ .+.. ..||.++|+||+|+++++.. .+..+.+.+.+ ..++++||
T Consensus 235 eR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~~--~~~~~~~~~~~----~~~v~~IS 308 (334)
T PRK12299 235 ERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEER--KEKIKELIKAL----GGPVFLIS 308 (334)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH--HHHHHHHHHHC----CCCEEEEE
T ss_conf 5343699999799889899999999999985065536987999988106885678--99999999870----99689997
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 53334858999999999998414
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
|.+|+|+++|++.+.+..+..+.
T Consensus 309 A~~g~Gl~eL~~~i~~~L~~~~~ 331 (334)
T PRK12299 309 AVTGEGLDELLRALWEFLKEQRR 331 (334)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87784999999999999997786
No 83
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=99.91 E-value=4e-24 Score=181.49 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=118.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
-|.|++.|.-+-||+||+.+|-++++| -+.--|.|+..--..+.+.+..++|+||||. ..|.. |+. +...
T Consensus 117 ~PvVtimGHVDHGKTsLLD~iR~t~V~-~~EaGGITQhIGA~~v~~~~~~itFiDTPGH-----eAFt~-mR~---RGa~ 186 (610)
T PRK12312 117 PPIVTIMGHVDHGKTTLLDTIRKTNVV-ASEAGGITQHIGAYQVEYQGKKITFIDTPGH-----EAFTE-MRA---RGAK 186 (610)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCEECEEEEEECCCEEEEECCCCH-----HHHHH-HHH---CCCC
T ss_conf 998999677257722588998548641-3467766440044999867976899728967-----98999-997---0776
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHHHHHCC------C--CCEEEHHHCCCC
Q ss_conf 77989999759887762344555332102332222056522301210--0124553122------2--201001110222
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEIYSLDF------K--EIVEISAEHDLG 151 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~------~--~~i~iSA~~g~G 151 (470)
-+|++++||+|.+|+.|+..+-.+.++..+.|+++++||||.+..+. ...++.++|+ | ..+||||++|.|
T Consensus 187 vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAktg~G 266 (610)
T PRK12312 187 VTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALKNEG 266 (610)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCC
T ss_conf 54579999975789774269999999975998899850446788987899999987076678857944599903687989
Q ss_pred CHHHHHHHHHH
Q ss_conf 01479999998
Q gi|255764471|r 152 TSELHSVIFKI 162 (470)
Q Consensus 152 i~~L~~~i~~~ 162 (470)
+++|++.|.-.
T Consensus 267 Id~LLe~IlL~ 277 (610)
T PRK12312 267 IDELLDSILLL 277 (610)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 84
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.1e-24 Score=185.19 Aligned_cols=158 Identities=26% Similarity=0.275 Sum_probs=124.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+|||||+||+|||||||+|+|.+. .+.|++++|.|...+.+.+. +.++.++||+||...-+..+-+... .|++.+
T Consensus 189 ~p~ValVGYTNAGKSTL~n~Lt~~~~-~~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~LP~~Li~aF~-sTLee~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEV 266 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCEEECCCCCCEEECCCCCEEEEEECCCHHHHCCHHHHHHHH-HHHHHH
T ss_conf 97699966788778999999851776-4103431353673204887999769998150056308867999999-999999
Q ss_pred HHCCEEEEEECCCCCCCHHHH----HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 877989999759887762344----5553321023322220565223012100124553122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH----AITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~----~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
.+||++|+|+|++++-...-. .+.+.|...++|+++|.||+|....+.. +....++.+.++|||++|.|+++|+
T Consensus 267 ~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~--~~~~~~~~~~v~ISA~~g~gi~~L~ 344 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI--ERLEEGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred HHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH--HHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 85989999805888478999999999999769999988999967015895778--9987379987999689998999999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|255764471|r 157 SVIFKIF 163 (470)
Q Consensus 157 ~~i~~~~ 163 (470)
+.|.+.+
T Consensus 345 ~~I~~~L 351 (351)
T TIGR03156 345 EAIAERL 351 (351)
T ss_pred HHHHHHC
T ss_conf 9999559
No 85
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=7.7e-24 Score=179.60 Aligned_cols=171 Identities=20% Similarity=0.287 Sum_probs=134.9
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE----CCEEEEEEECHHCCCCCCCCCHHHHH
Q ss_conf 34443038864035642567887652012110002456654202311420----34069998171104444430001110
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW----KNHPIEIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~----~~~~~~liDTaGirkk~~~~~~~E~~ 274 (470)
...+|+-|+|||+...||+||+.+|-+.+ ..-++--|.|...=--.+++ +++++.|+|||| ||.|
T Consensus 268 l~~RpPVVTIMGHVDHGKTsLLD~iR~t~-Va~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPG----------HeAF 336 (770)
T CHL00189 268 LIRRPPIVTILGHVDHGKTTLLDAIRKTN-IAQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPG----------HEAF 336 (770)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCC----------HHHH
T ss_conf 67789989985772577203788885288-513456765550352999751578897589955994----------6889
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 00121001201205998455321220212232000000357665589442233541-55566654201333200488311
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+.+|+..| .-+|++++|+.|.+|+.+|+..-++++...+.|+|+++||+|+-... ....+++.++-...-.|-..+++
T Consensus 337 t~MRaRGA-~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~ 415 (770)
T CHL00189 337 SSMRSRGA-NVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPM 415 (770)
T ss_pred HHHHHCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEE
T ss_conf 99986278-66667999996578856727999999987699889998774589988578999999869552223795599
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 1234533348589999999999984146
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEINKLWKTR 381 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~~~~~~~r 381 (470)
++|||++|.|+++|+++|.-..+-..-+
T Consensus 416 V~ISAktg~gId~LLE~IlL~AEvlELk 443 (770)
T CHL00189 416 IPISALQGTNIDKLLEMILLLAEIENLQ 443 (770)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9966167988799999999998787523
No 86
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=1.9e-24 Score=183.71 Aligned_cols=154 Identities=25% Similarity=0.388 Sum_probs=98.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHH--------------HHHHHHCCCCEEEECCE-----EEEEEECHHCCCCC
Q ss_conf 388640356425678876520121100024--------------56654202311420340-----69998171104444
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQ--------------SGITRDSVSISWNWKNH-----PIEIFDTAGMRKPS 265 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~--------------~GtTrD~i~~~~~~~~~-----~~~liDTaGirkk~ 265 (470)
++||+|++++|||||+++|+.....+.... -|.|.+.-...+.|++. .+.|+||||
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPG----- 76 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPG----- 76 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCC-----
T ss_conf 599994899898999999999859954145732441651767863866874336888413678714899998998-----
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 43000111000121001201205998455321220212232000000357665589442233541555666542013332
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~ 345 (470)
++.|. ....+++.-||.+++|+||.+|+..|++..+.++.+.+.|+|+++||||+...+. +...+++++.+
T Consensus 77 -----h~dF~-~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~---~~v~~~i~~~~ 147 (179)
T cd01890 77 -----HVDFS-YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP---ERVKQQIEDVL 147 (179)
T ss_pred -----CCCCH-HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH---HHHHHHHHHHH
T ss_conf -----64517-7898899754427899864778737489999999876998899986555677899---99999999986
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0048831112345333485899999999
Q gi|255764471|r 346 PQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 346 ~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
. +...+++++||++|.|+++|+++|.+
T Consensus 148 g-~~~~~~v~vSA~~g~gv~~Ll~~i~~ 174 (179)
T cd01890 148 G-LDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred C-CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8-89767488437889798999999996
No 87
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.2e-24 Score=185.05 Aligned_cols=160 Identities=29% Similarity=0.431 Sum_probs=125.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCC--CCE
Q ss_conf 038864035642567887652012110002456654202311420340699981711044444300011100012--100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK--SMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~--t~~ 281 (470)
.+||++|.||||||||+|+|+|.+ ..|++.||+|.+--+..+.++|+.++++|.||+- ++..+|... |.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~Y-------SL~~~S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTY-------SLTAYSEDEKVARD 75 (653)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEECCCCCCEEEEEEEEEEECCCEEEEEECCCCC-------CCCCCCCHHHHHHH
T ss_conf 438985699854899999985667-4654789806998788997358548998689756-------58889920899999
Q ss_pred EE--ECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 12--0120599845532122021223200000035766558944223354155566654201333200488311123453
Q gi|255764471|r 282 SV--RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 282 ~i--~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~ 359 (470)
.+ ...|+++.|+||++ +. ..+.+.-++.|.|+|+++++|++|..+.+.-..+ .+.++..-++|++++||+
T Consensus 76 ~ll~~~~D~ivnVvDA~n-Le-RnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id------~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 76 FLLEGKPDLIVNVVDATN-LE-RNLYLTLQLLELGIPMILALNMIDEAKKRGIRID------IEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred HHHCCCCCEEEEEECCCH-HH-HHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCC------HHHHHHHHCCCEEEEEEC
T ss_conf 986389988999602323-77-7789999999859985999612756886497126------999999868988998730
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 33485899999999999841
Q gi|255764471|r 360 TGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 360 ~g~gi~~l~~~i~~~~~~~~ 379 (470)
+|+|++++++.+.+.++.-.
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCCCHHHHHHHHHHHCCCCC
T ss_conf 58897999999987432556
No 88
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=99.89 E-value=7.6e-23 Score=172.90 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=123.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 388640356425678876520121100024566542023114203-4069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
-|++||.||||||||+++++... .-+.+.|.||..+.-..+.++ +..|.+.|.|||-+..+...++- .+-+++|
T Consensus 160 DVGLvG~PNaGKSTll~~is~A~-pkIa~YpFTTl~P~lGvv~~~~~~~~~iADiPGLIeGA~~g~GLG----~~FLrHi 234 (429)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADLPGLIEGASEGVGLG----HQFLRHI 234 (429)
T ss_pred CCCEEECCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC----HHHHHHH
T ss_conf 76336479984578998875489-755787740257666689856986699962674567744688866----8888876
Q ss_pred ECCEEEEEECCCC-----CCCHHHHHHHHHHHHC-----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0120599845532-----1220212232000000-----35766558944223354155566654201333200488311
Q gi|255764471|r 284 RTCETTIVLLDAT-----IPFEKQDLRIVDSVFN-----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 284 ~~advvi~viDa~-----~~~~~qd~~i~~~i~~-----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
++|.+.++|+|++ +++.+. ..|-+.+.. ..||.|+|+||+|+.+.+.. .+.+++.+. ...++
T Consensus 235 eR~~~L~hviD~s~~~~~dp~~d~-~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~~-~~~~~~~~~------~~~~i 306 (429)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDY-ETINKELKKYNLRLLERPQIIVANKMDLPEAEEN-LEEFKEKLA------KGKKV 306 (429)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHHH-HHHHHHHHH------CCCCE
T ss_conf 624679999978787777989999-9999999986898726966999976458576999-999999753------46978
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 123453334858999999999998414689
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~ 383 (470)
++|||.|++|+++|+..+.+..+.......
T Consensus 307 ~~iSa~t~egl~~l~~~i~~~l~~~~~~~~ 336 (429)
T PRK12297 307 FPISALTKQGLDELLYAIAELLEKTPPEFE 336 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 999684451999999999999985712234
No 89
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=170.43 Aligned_cols=162 Identities=22% Similarity=0.337 Sum_probs=117.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC-CCCCCCCHHHHHHCCCCC
Q ss_conf 4303886403564256788765201211000245665420231142034069998171104-444430001110001210
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSM 280 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir-kk~~~~~~~E~~s~~~t~ 280 (470)
+...|.|.|.||||||||+++|++.+ .-|.+.|.||+-..-..|++++..+++||||||- |.....+.+|.-++. |+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~-AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL-AL 244 (346)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHH-HH
T ss_conf 99738985699875899998875489-76678885336546765504870589842886457885773689999999-99
Q ss_pred EEEECCEEEEEECCCCC----CCHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321----22021223200000035-76655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATI----PFEKQDLRIVDSVFNTG-HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~----~~~~qd~~i~~~i~~~~-k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
+.+ .++++|++|+++ ++..| .++.+.+.+.- +|+++|+||+|+.+.+. .++....+ ........+.
T Consensus 245 ~hl--~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~~~~e~--~~~~~~~~----~~~~~~~~~~ 315 (346)
T COG1084 245 RHL--AGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFKAPIVVVINKIDIADEEK--LEEIEASV----LEEGGEEPLK 315 (346)
T ss_pred HHH--CCEEEEEECCCCCCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHH----HHHCCCCCCC
T ss_conf 974--285899976850028999999-99999999853887699974101246667--89999998----7632655431
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 3453334858999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~ 374 (470)
+|+..+.+++.+...+...
T Consensus 316 ~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 316 ISATKGCGLDKLREEVRKT 334 (346)
T ss_pred EEEEEHHHHHHHHHHHHHH
T ss_conf 3543000178899999887
No 90
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=8.8e-23 Score=172.45 Aligned_cols=153 Identities=26% Similarity=0.331 Sum_probs=113.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEC--------CC------CCCEEEEEEEEEEECC-----EEEEEEECCCCCCCC
Q ss_conf 8999718988788899998588501025--------89------8530223899999899-----899999658842076
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVG--------NH------PGITRDRLYGQAIING-----VIFNIVDTAGIADGK 64 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~--------~~------~g~Trd~~~~~~~~~~-----~~~~liDT~G~~~~~ 64 (470)
-|||+|.++.|||||.++|+....++.. |. -|.|-+.....+.|.+ +.+.|+||||...
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~d-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCC--
T ss_conf 599994899898999999999859954145732441651767863866874336888413678714899998998645--
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHHHHH-HHCC--C
Q ss_conf 368999999999999987798999975988776234455533210233222205652230121--0012455-3122--2
Q gi|255764471|r 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFYEIY-SLDF--K 139 (470)
Q Consensus 65 ~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~e~~-~lg~--~ 139 (470)
|..++ ..++.-||.+|+||||.+|+.+++++.+++++..+.|+++|+||+|....+ ....++. .+|+ .
T Consensus 80 ---F~~~~----~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g~~~~ 152 (179)
T cd01890 80 ---FSYEV----SRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPS 152 (179)
T ss_pred ---CHHHH----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf ---17789----88997544278998647787374899999998769988999865556778999999999998688976
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 20100111022201479999998610
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
+++||||++|.|+++|++.|.+.+|.
T Consensus 153 ~~v~vSA~~g~gv~~Ll~~i~~~ip~ 178 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 74884378897989999999964889
No 91
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=4.6e-23 Score=174.37 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=122.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC-------CCCCCCCCHHHHH
Q ss_conf 3038864035642567887652012-1100024566542023114203406999817110-------4444430001110
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYN-RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-------RKPSRITESLEQK 274 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~-r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi-------rkk~~~~~~~E~~ 274 (470)
...||++||+|||||||+|+|++++ .+.||.+||.||-. ..|++++ .+.|||-||. ..+.++..-++.|
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~i--Nff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLI--NFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEE--EEEEECC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9679998168666899999996786355657999854236--7998358-579981799540328999999999999999
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH--HHHHHHHHCCCCCCCCCCCC
Q ss_conf 0012100120120599845532122021223200000035766558944223354155--56665420133320048831
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN--LLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~--~~~~~~~~~~~~~~~~~~~~ 352 (470)
-..| ..| ..+++++|+..++++.|..+++++.+.+.|+++++||+|.++.... ......+.+....++..+
T Consensus 101 L~~R--~~L---~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~-- 173 (200)
T COG0218 101 LEKR--ANL---KGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW-- 173 (200)
T ss_pred HHHC--HHH---EEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE--
T ss_conf 9635--222---489999978999868799999999975998699997110377467888999999984689886643--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 112345333485899999999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
+++.|+.++.|+++|...|.+.+.
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999865454489999999999864
No 92
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.89 E-value=2.9e-23 Score=175.73 Aligned_cols=162 Identities=26% Similarity=0.340 Sum_probs=123.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+--|+|||.||||||||+|+|++.+-- |+++|.||.....|.+.+. +.+|.+.|+||+.+..+.. ..+-.+.++.+
T Consensus 158 iADVgLVG~PNaGKSTLl~~is~A~pk-Ia~YpFTTl~P~lGvv~~~d~~~~~iaDiPGlIegA~~g--~GLG~~FLrHi 234 (334)
T PRK12299 158 LADVGLVGLPNAGKSTLISSVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGLGHRFLKHI 234 (334)
T ss_pred ECCCEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCCC--CCCHHHHHHHH
T ss_conf 403014636987466999987647643-357873003875479994688678998667433552347--77478998766
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHHC-----CCCCCCCCHHHHCCCHHHHHHH---HHHH-HCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-55533210-----2332222056522301210012---4553-122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLRK-----KNIPIIIVSNKMDTRIAQRNFY---EIYS-LDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~~---e~~~-lg~~~~i~iSA~~g~ 150 (470)
+++.++++|+|+...-.-+|. .+.+.|.. ..+|.++|+||+|....++... ++.+ ++ .++++|||.+|+
T Consensus 235 eR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~~~~~~~~~~~~~~-~~v~~ISA~~g~ 313 (334)
T PRK12299 235 ERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEERKEKIKELIKALG-GPVFLISAVTGE 313 (334)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCC
T ss_conf 5343699999799889899999999999985065536987999988106885678999999998709-968999787784
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 20147999999861012
Q gi|255764471|r 151 GTSELHSVIFKIFKQKY 167 (470)
Q Consensus 151 Gi~~L~~~i~~~~~~~~ 167 (470)
|+++|++.+.+.+.+..
T Consensus 314 Gl~eL~~~i~~~L~~~~ 330 (334)
T PRK12299 314 GLDELLRALWEFLKEQR 330 (334)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 99999999999999778
No 93
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=99.89 E-value=8.3e-23 Score=172.63 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=121.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 3886403564256788765201211000245665420231142034-069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
-|++||.||+|||||+++++... .-|.+.|.||..+.-..+.+.+ +.|.+.|.|||-+..+...++- .+-+++|
T Consensus 161 DVGLvG~PNAGKSTll~~iS~Ak-PKIAdYpFTTL~PnLGvV~~~~~~~fviADIPGLIeGAs~G~GLG----~~FLrHi 235 (380)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVIADIPGLIEGAAEGAGLG----IRFLKHL 235 (380)
T ss_pred CCCEEECCCCCCHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHH----HHHHHHH
T ss_conf 65146369886108998855589-754788753368746799946986699987775557755587728----9999998
Q ss_pred ECCEEEEEECCCCC--CCHH-HHHHH-HHHHHC-----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 01205998455321--2202-12232-000000-----357665589442233541555666542013332004883111
Q gi|255764471|r 284 RTCETTIVLLDATI--PFEK-QDLRI-VDSVFN-----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 284 ~~advvi~viDa~~--~~~~-qd~~i-~~~i~~-----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
++|.+.++|+|++- +-.. +|.++ .+.+.. ..||.++|+||+||++++.. .+....+.+.+.+ ..|++
T Consensus 236 eRt~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~--~~~~~~~~~~~~~--~~~v~ 311 (380)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEA--EERAKEIVEALGW--EGPVY 311 (380)
T ss_pred HHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHH--HHHHHHHHHHCCC--CCCEE
T ss_conf 7535899999688777519999999999999985976605987999988548997999--9999999997088--88879
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2345333485899999999999841
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~~~ 379 (470)
+|||.+|+|+++|+..+.+..+...
T Consensus 312 ~ISA~tgeG~~~L~~~i~~~l~~~~ 336 (380)
T PRK12298 312 LISAASGEGTKELCWDLMTFIEENP 336 (380)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9978768799999999999998672
No 94
>KOG1423 consensus
Probab=99.89 E-value=4.1e-23 Score=174.68 Aligned_cols=175 Identities=25% Similarity=0.376 Sum_probs=137.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCH---HHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763---689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN---CSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~i~~~~~~ai 80 (470)
.||++|.||||||||.|.++|++++.||..+.|||.++.|.+.-++.+..|+||||+..... +.+........+.|+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~ 153 (379)
T KOG1423 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAA 153 (379)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHH
T ss_conf 99997089765455445764872120115665302013578715965899964876453341356788887653789888
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHCCCHHHHHHH--------------------HH------
Q ss_conf 877989999759887762344555332102-332222056522301210012--------------------45------
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDTRIAQRNFY--------------------EI------ 133 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~-~~~~ilv~NK~D~~~~~~~~~--------------------e~------ 133 (470)
+.||+|+.|+|+.+.-++.-..+.+.|+++ +.|-++|.||+|..+....+. .|
T Consensus 154 q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~ 233 (379)
T KOG1423 154 QNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSD 233 (379)
T ss_pred HHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 63887999985567767568078777899861872033040002214667766677605551003456588873559743
Q ss_pred --HH-----HCCCCCEEEHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCC
Q ss_conf --53-----1222201001110222014799999986101234511221000
Q gi|255764471|r 134 --YS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 (470)
Q Consensus 134 --~~-----lg~~~~i~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~ 178 (470)
|+ -+|.++|++||..|.|+.+|.+.+....+..+..++.+.....
T Consensus 234 ~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~ 285 (379)
T KOG1423 234 EKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEE 285 (379)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 3564324764531489984046667899999997237999987776660666
No 95
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.89 E-value=1.1e-22 Score=171.86 Aligned_cols=106 Identities=41% Similarity=0.563 Sum_probs=97.1
Q ss_pred CHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 78889999858850102589853022389999989989999965884207636899999999999998779899997598
Q gi|255764471|r 14 GKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSK 93 (470)
Q Consensus 14 GKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~ 93 (470)
|||||||+|+|++.|+|+++||||||..++.+.+++.++.|+||||+...... ....+..+++.+++.||+++||+|++
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~-~~~~~~~~~~~~~~~~d~il~viD~~ 79 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASK-GEGELGNRTLEAIEEADLILHVVDAS 79 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCH-HHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 91279999978885555288998846355899889988999837873226504-67888999997234573799999999
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 877623445553321023322220565
Q gi|255764471|r 94 AGITPYDHAITSFLRKKNIPIIIVSNK 120 (470)
Q Consensus 94 ~g~~~~D~~i~~~lr~~~~~~ilv~NK 120 (470)
++....|.++++++++.++|+++|+||
T Consensus 80 ~~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 80 EGLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999989999999999869988999939
No 96
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=99.88 E-value=1.7e-22 Score=170.47 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=143.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
-|++||.||||||||+++++... .-+.+.|.||.-+.-..+++.+..|.+.|-|||-+..+...++- .+-+++|+
T Consensus 161 DVGLvG~PNaGKSTLl~~iS~Ak-pkIA~YpFTTL~PnLGvv~~~d~~f~iADiPGLIeGAs~g~GLG----~~FLRHie 235 (495)
T PRK12296 161 DVGLVGFPSAGKSSLISAISAAK-PKIADYPFTTLVPNLGVVSAGDHTFTVADVPGLIPGASEGRGLG----LDFLRHIE 235 (495)
T ss_pred CCCEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCH----HHHHHHHH
T ss_conf 31101189996158998875488-76578775545754678970795289985664346500389843----99999875
Q ss_pred CCEEEEEECCCC------CCCHHHH-----HHHHHHHH--------CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 120599845532------1220212-----23200000--------0357665589442233541555666542013332
Q gi|255764471|r 285 TCETTIVLLDAT------IPFEKQD-----LRIVDSVF--------NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 (470)
Q Consensus 285 ~advvi~viDa~------~~~~~qd-----~~i~~~i~--------~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~ 345 (470)
+|-+.++|+|++ +++++.+ +...+..+ =..||-|||+||+|+.+.+ +..+.++..+
T Consensus 236 R~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~-e~~e~~~~~l---- 310 (495)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDAR-ELAEFVRPEL---- 310 (495)
T ss_pred HCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHH-HHHHHHHHHH----
T ss_conf 25479999968876667896999999999999719143044332321019659999665675769-9999999999----
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEE
Q ss_conf 00488311123453334858999999999998414689789899999999828878778712069999862879778999
Q gi|255764471|r 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLI 425 (470)
Q Consensus 346 ~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~~g~~~ki~y~~Q~~~~Pp~f~i 425 (470)
.. ...||++|||.+++|+++|+..+.++.......-+..+-.+ ....|.......+.| ......+..|.+
T Consensus 311 ~~-~g~~Vf~ISA~t~eGl~eL~~~l~elv~~~~~~~~~~e~~~------~v~~p~~~~~~~F~I---~~~~~~~g~f~V 380 (495)
T PRK12296 311 EE-RGWPVFEVSTVTREGLRPLSFALAELVSAARAARPEAEPTR------IVIRPKAVDESGFTV---EPDGDGEGGFRV 380 (495)
T ss_pred HH-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHCCCCCCCCE------EEECCCCCCCCCCEE---EEECCCCCEEEE
T ss_conf 87-49957998641003899999999999985620257777750------242354567778689---995278817999
Q ss_pred EECCHHHC-------CHHHHHHHHHHHHH
Q ss_conf 92582238-------86689999998889
Q gi|255764471|r 426 FCTFPNKI-------PESYKRYLINRLRI 447 (470)
Q Consensus 426 f~n~~~~~-------~~~y~ryl~n~~r~ 447 (470)
.+-.++.+ ..--..||.+.|++
T Consensus 381 ~G~~iEr~v~~tdf~n~Eav~~f~~~L~~ 409 (495)
T PRK12296 381 RGEKPERWVRQTDFDNDEAVGYLADRLAR 409 (495)
T ss_pred ECHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 78389999986689989999999999998
No 97
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=4.8e-23 Score=174.22 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=119.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCC------HHHHHHHHHCCC--------------CEEEECCEEEEEEECHHCCC
Q ss_conf 0388640356425678876520121100------024566542023--------------11420340699981711044
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLT------GSQSGITRDSVS--------------ISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~iv------s~~~GtTrD~i~--------------~~~~~~~~~~~liDTaGirk 263 (470)
++|+++|+.++|||||+.+|.+...... ...-|+|.|.-. ...++.+..|.|+||||
T Consensus 1 ~NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPG--- 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPG--- 77 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC---
T ss_conf 98999976178999999999833350122135889977971671001378514422112323467745899987798---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH--HHHHHHHHHC
Q ss_conf 44430001110001210012012059984553212202122320000003576655894422335415--5566654201
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRTKA 341 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~--~~~~~~~~~~ 341 (470)
++.|... ..++...+|.+++|+||.+|+..|++..+..+...+.|+|+++||||+++... ...++++..+
T Consensus 78 -------H~df~~~-~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l 149 (192)
T cd01889 78 -------HASLIRT-IIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred -------CHHHHHH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf -------3889988-88887432652799987888878999999999985899799997412788157799999999999
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33320--0488311123453334858999999999
Q gi|255764471|r 342 IKNLP--QIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 342 ~~~~~--~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
...+. .+...|++++||++|.|+.+|.+.+.+.
T Consensus 150 ~~~l~~~~~~~~~iipiSA~~G~gi~eL~~~i~~l 184 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99986538999849995789884989999888761
No 98
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=9.6e-23 Score=172.19 Aligned_cols=154 Identities=20% Similarity=0.234 Sum_probs=111.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCC-----H----------HHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCC
Q ss_conf 0388640356425678876520121100-----0----------245665420231142034069998171104444430
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLT-----G----------SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~iv-----s----------~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~ 268 (470)
-+|+++|+..+|||||+.+|+..--.+. . ..-|.|.++-...++|+++.|.|+||||
T Consensus 3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPG-------- 74 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPG-------- 74 (194)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC--------
T ss_conf 789999068987999999999974876304652168614758888728763345899998998899998998--------
Q ss_pred CHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCC-
Q ss_conf 0011100012100120120599845532122021223200000035766558944223354155-56665420133320-
Q gi|255764471|r 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLP- 346 (470)
Q Consensus 269 ~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~-~~~~~~~~~~~~~~- 346 (470)
+..|+- ...++++-+|.+++|+||.+|+..|++.++.++.+.+.|+|+++||+|+.+.+.+ ..+++.+.+. .+.
T Consensus 75 --H~dF~~-~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~-~~~~ 150 (194)
T cd01891 75 --HADFGG-EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFI-ELGA 150 (194)
T ss_pred --CHHHHH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HCCC
T ss_conf --477777-898776434467898653789758999999999872997499885645898889999999999998-6399
Q ss_pred --CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --04883111234533348589999
Q gi|255764471|r 347 --QIGDIYINTISGRTGEGLDDLMV 369 (470)
Q Consensus 347 --~~~~~~i~~iSA~~g~gi~~l~~ 369 (470)
....+|++++||++|.+.+.+.+
T Consensus 151 ~~~~~~~pii~~SA~~G~~~d~~~~ 175 (194)
T cd01891 151 TEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 9333588578725655335778865
No 99
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.88 E-value=3.5e-23 Score=175.20 Aligned_cols=153 Identities=27% Similarity=0.399 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHCCCEEE--------------ECCCCCCEEEEEEEEEEE------CCEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 87888999985885010--------------258985302238999998------9989999965884207636899999
Q gi|255764471|r 13 VGKSTLFNRLVKKKMAV--------------VGNHPGITRDRLYGQAII------NGVIFNIVDTAGIADGKNCSIAKQM 72 (470)
Q Consensus 13 vGKStL~N~l~~~~~ai--------------v~~~~g~Trd~~~~~~~~------~~~~~~liDT~G~~~~~~~~~~~~i 72 (470)
=|||||--||+-.-.++ ..-.=|.|=-.+.-.+.| ..+.+.||||||..+ |+.++
T Consensus 14 HGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVD-----FsYEV 88 (598)
T TIGR01393 14 HGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVD-----FSYEV 88 (598)
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCC-----CCHHH
T ss_conf 8932488999986174562025430577510000058201156347533753388788996452889721-----27378
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH-HH-HCCCCCCCCCHHHHCCCHHHHH--HHHHHH-HCC--CCCEEEH
Q ss_conf 999999998779899997598877623445553-32-1023322220565223012100--124553-122--2201001
Q gi|255764471|r 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITS-FL-RKKNIPIIIVSNKMDTRIAQRN--FYEIYS-LDF--KEIVEIS 145 (470)
Q Consensus 73 ~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~-~l-r~~~~~~ilv~NK~D~~~~~~~--~~e~~~-lg~--~~~i~iS 145 (470)
.+ +|+-|--+|+||||.+|+-.+ .+++ || -..+-.+|-|+||+|+++++.. ..|..+ +|+ .+.+.+|
T Consensus 89 SR----SLAACEGALL~VDA~QGvEAQ--T~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~~ai~~S 162 (598)
T TIGR01393 89 SR----SLAACEGALLLVDAAQGVEAQ--TLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILAS 162 (598)
T ss_pred HH----HHHHHCCEEEEEECCCCHHHH--HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 88----888716403561410323588--899998875618758477825368888858999987654188964303875
Q ss_pred HHCCCCCHHHHHHHHHHHHHC--CCC-CCHHHHH
Q ss_conf 110222014799999986101--234-5112210
Q gi|255764471|r 146 AEHDLGTSELHSVIFKIFKQK--YPN-HPLEMIE 176 (470)
Q Consensus 146 A~~g~Gi~~L~~~i~~~~~~~--~~~-~~~e~~e 176 (470)
|++|.||++|+++|++..|.. .++ -|++.+.
T Consensus 163 AKtG~Gi~e~LEaIv~~vPpP~Gd~~DapLkALI 196 (598)
T TIGR01393 163 AKTGIGIEEILEAIVKRVPPPKGDPDDAPLKALI 196 (598)
T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 0367888999889710181001138886632278
No 100
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.8e-22 Score=169.08 Aligned_cols=167 Identities=20% Similarity=0.340 Sum_probs=106.4
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEEEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 4443038864035642567887652012110002456654202311420-340699981711044444300011100012
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
..+|.-|+|||+.++||+||+.+|-+.+ ..-++--|.|...=--.+++ +|+.+.|+|||| ||.|+.+|
T Consensus 338 ~~r~pvvt~mghvdhgkt~lld~~r~~~-v~~~e~ggitq~iga~~v~~~~~~~itf~dtpg----------h~af~~mr 406 (839)
T PRK05306 338 VPRPPVVTIMGHVDHGKTSLLDAIRKTK-VAAGEAGGITQHIGAYQVETENGKKITFLDTPG----------HEAFTAMR 406 (839)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCEEEEEEEEECCCCEEEEECCCC----------HHHHHHHH
T ss_conf 6689889885774677314899986287-535567875522234999956998799855885----------58899998
Q ss_pred CCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1001201205998455321220212232000000357665589442233541-555666542013332004883111234
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
+..| .-.|+|++|+.|.+|+.+|+.--++++...+.|+|+++||+|+-... ....+++.++-..--.|-..++++.||
T Consensus 407 ~rga-~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~s 485 (839)
T PRK05306 407 ARGA-QVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPVS 485 (839)
T ss_pred HCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEE
T ss_conf 6357-654369999977777567789999999974998899974046788988999999998498645428944899815
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 533348589999999999984
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~~~ 378 (470)
|++|.|+++|+++|.-..+-.
T Consensus 486 a~~~~~~~~l~e~i~l~ae~~ 506 (839)
T PRK05306 486 AKTGEGIDELLEAILLQAEVL 506 (839)
T ss_pred ECCCCCHHHHHHHHHHHHHHH
T ss_conf 157887899999999876652
No 101
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.88 E-value=8.9e-23 Score=172.42 Aligned_cols=162 Identities=19% Similarity=0.291 Sum_probs=97.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCHHHHCCCHHHHH-HH-HHHHHCCCCCEEEHHHCCCCCHHHH---
Q ss_conf 98999975988776234455533210--23322220565223012100-12-4553122220100111022201479---
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMDTRIAQRN-FY-EIYSLDFKEIVEISAEHDLGTSELH--- 156 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~lr~--~~~~~ilv~NK~D~~~~~~~-~~-e~~~lg~~~~i~iSA~~g~Gi~~L~--- 156 (470)
|+|+.|+|||.+++.....+.+++++ .+||.++|+||+|+...+.. .| ++++-.+..+.+.|+.+........
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~~~~~~~W~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 98999997037867688749999986069984899985232189899999999998419827887000223300123332
Q ss_pred ---HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHH
Q ss_conf ---99999861012345112210000111111222111233433234443038864035642567887652012110002
Q gi|255764471|r 157 ---SVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 (470)
Q Consensus 157 ---~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~ 233 (470)
........... ....+.+.. .............+++++++|.||||||||+|+|.|+..+.||+
T Consensus 81 ~~~~~~~~~~~~~~-~~g~~~l~~------------~~~~~~~~~~~~~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~ 147 (172)
T cd04178 81 KVEAASADLLRSSV-CFGADCLLK------------LLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH------------HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECC
T ss_conf 11124566664223-213899999------------99987552477665599998347742578998873474477659
Q ss_pred HHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf 4566542023114203406999817110
Q gi|255764471|r 234 QSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 234 ~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
.||+||+.... .. +..+.|+|||||
T Consensus 148 ~PG~Tk~~q~i--~l-~~~i~L~DtPGv 172 (172)
T cd04178 148 TPGVTKSMQEV--HL-DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEEEEE--EE-CCCEEEEECCCC
T ss_conf 99547667999--95-899899969199
No 102
>PRK11058 putative GTPase HflX; Provisional
Probab=99.87 E-value=1.8e-22 Score=170.34 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=129.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+|||||++|+|||||||+|++... .+.|+...|-|.....+.+. +.++.|.||.||...-+..+-+.... |++.+
T Consensus 197 ~~~ValVGYTNAGKSTL~n~Lt~~~v-~~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~~LP~~LveAF~s-TLeEv 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA-TLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHCCHHHHHHHHH-HHHHH
T ss_conf 97699973577778999877752887-63254501478620267869998699971506665198999999999-99999
Q ss_pred HHCCEEEEEECCCCCCCHHH----HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 87798999975988776234----45553321023322220565223012100124553122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D----~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
.+||++|+|+|+++.-.... ..+.+.|.-.++|.++|.||+|..............++.+.++|||++|.|++.|+
T Consensus 275 ~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~~~~~~~~~~p~~V~iSA~tg~Gi~~L~ 354 (426)
T PRK11058 275 RQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred HCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 63988999984999379999999999999759999977999977023896445566653399877999789998999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999861012
Q gi|255764471|r 157 SVIFKIFKQKY 167 (470)
Q Consensus 157 ~~i~~~~~~~~ 167 (470)
+.|.+.+....
T Consensus 355 ~~I~~~L~~~~ 365 (426)
T PRK11058 355 QALTERLSGEV 365 (426)
T ss_pred HHHHHHCCCCC
T ss_conf 99998703376
No 103
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.87 E-value=4.3e-22 Score=167.79 Aligned_cols=140 Identities=32% Similarity=0.389 Sum_probs=103.0
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH---HHH--------HHCCCCCEEEHHHC
Q ss_conf 9877989999759887762344555332102332222056522301210012---455--------31222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY---EIY--------SLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~---e~~--------~lg~~~~i~iSA~~ 148 (470)
....-+|++|||+.+-......++...+ .++|+++|+||+|....+.... .+. .+...+++.+||++
T Consensus 32 ~~~~~lVv~VvDi~Df~~S~~~~l~~~~--~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvSa~~ 109 (190)
T cd01855 32 SPKKALVVHVVDIFDFPGSLIPRLRLFG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKK 109 (190)
T ss_pred CCCCCEEEEEEECCCCCCCCCHHHHHHC--CCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 4678459999754357644465579861--79868999981551788765888898999997501599843179976657
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCC-
Q ss_conf 2220147999999861012345112210000111111222111233433234443038864035642567887652012-
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN- 227 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~- 227 (470)
|.|+++|++.|.+..... -.+.++|.+|||||||+|+|+++.
T Consensus 110 ~~gi~~L~~~i~~~~~~~-------------------------------------~~vyvvG~~NvGKSTLiN~Ll~~~~ 152 (190)
T cd01855 110 GWGVEELINAIKKLAKKG-------------------------------------GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCCHHHHHHHHHHHHCCC-------------------------------------CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 869899999999974669-------------------------------------8579980587546799999863023
Q ss_pred -------CCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHC
Q ss_conf -------1100024566542023114203406999817110
Q gi|255764471|r 228 -------RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 228 -------r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGi 261 (470)
+.-||..||||++.+...+.. ...++|||||
T Consensus 153 ~~~~~~~~~t~S~~PGTTl~~i~~~l~~---~~~l~DtPGi 190 (190)
T cd01855 153 GKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCC---CCEEEECCCC
T ss_conf 4434566406679997316525897399---9999959599
No 104
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.1e-21 Score=165.07 Aligned_cols=150 Identities=21% Similarity=0.365 Sum_probs=111.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCE------------------EEEEEECCCCCC
Q ss_conf 508999718988788899998588501025898-5302238999998998------------------999996588420
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHP-GITRDRLYGQAIINGV------------------IFNIVDTAGIAD 62 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~-g~Trd~~~~~~~~~~~------------------~~~liDT~G~~~ 62 (470)
-|.|+|+|.--.||+||..+|-++++ ++..+ |.|+..=-..+.+... -+.|+||||.
T Consensus 5 ~PIvtimGHVDhGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPGH-- 80 (592)
T PRK04004 5 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPGH-- 80 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCH--
T ss_conf 98899978737776368999862877--35557762323065984123101103443344332345677557659965--
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH----------------
Q ss_conf 7636899999999999998779899997598877623445553321023322220565223012----------------
Q gi|255764471|r 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA---------------- 126 (470)
Q Consensus 63 ~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~---------------- 126 (470)
..|.. |+. +...-+|++++|||+.+|+.|+..|-.+.++..+.|+++++||||....
T Consensus 81 ---eaFt~-mR~---RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~~q 153 (592)
T PRK04004 81 ---EAFSN-LRK---RGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFKKQ 153 (592)
T ss_pred ---HHHHH-HHH---HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHC
T ss_conf ---99999-997---36745788999997788867627999999997599889998622356667767674112322317
Q ss_pred --------H----HHHHHHHHHCCC--------------CCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf --------1----001245531222--------------20100111022201479999998
Q gi|255764471|r 127 --------Q----RNFYEIYSLDFK--------------EIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 127 --------~----~~~~e~~~lg~~--------------~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
+ ....++++.||. .++|+||++|+|+++|++.+...
T Consensus 154 ~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 154 SERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 38899999888888889998728763221454345881489978205689989999999999
No 105
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=99.86 E-value=1.4e-21 Score=164.29 Aligned_cols=167 Identities=25% Similarity=0.313 Sum_probs=127.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501025898530223899999899-8999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+--|+|||.||+|||||+++++..+- -|.++|.||-...-|.+.+.+ ..|.+.|.|||.++.+.. ..+-.+.++.+
T Consensus 159 iADVGLvG~PNAGKSTll~~iS~AkP-KIAdYpFTTL~PnLGvV~~~~~~~fviADIPGLIeGAs~G--~GLG~~FLrHi 235 (380)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVIADIPGLIEGAAEG--AGLGIRFLKHL 235 (380)
T ss_pred ECCCCEEECCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHH
T ss_conf 51651463698861089988555897-5478875336874679994698669998777555775558--77289999998
Q ss_pred HHCCEEEEEECCCC--CCCHHH--HHHHHHHHCC-----CCCCCCCHHHHCCCHHHHHH---HHHH-HHCC-CCCEEEHH
Q ss_conf 87798999975988--776234--4555332102-----33222205652230121001---2455-3122-22010011
Q gi|255764471|r 81 NEAHLILFLIDSKA--GITPYD--HAITSFLRKK-----NIPIIIVSNKMDTRIAQRNF---YEIY-SLDF-KEIVEISA 146 (470)
Q Consensus 81 ~~aD~il~vvD~~~--g~~~~D--~~i~~~lr~~-----~~~~ilv~NK~D~~~~~~~~---~e~~-~lg~-~~~i~iSA 146 (470)
+.+.++|||||... +-.+.+ ..|.+.|+.+ .+|.++|+||+|+...++.. .++. ++|. .++++|||
T Consensus 236 eRt~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~~~~~~~~~~~~~~~~~v~~ISA 315 (380)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKEIVEALGWEGPVYLISA 315 (380)
T ss_pred HHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 75358999996887775199999999999999859766059879999885489979999999999997088888799978
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1022201479999998610123451
Q gi|255764471|r 147 EHDLGTSELHSVIFKIFKQKYPNHP 171 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~~~~~~~~~~~ 171 (470)
.+|+|+++|+..+...+.+.+...+
T Consensus 316 ~tgeG~~~L~~~i~~~l~~~~~~~~ 340 (380)
T PRK12298 316 ASGEGTKELCWDLMTFIEENPAEQA 340 (380)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 7687999999999999986724342
No 106
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=1.7e-21 Score=163.71 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=111.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCC-----------CCC----CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 3038864035642567887652012-----------110----0024566542023114203406999817110444443
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYN-----------RLL----TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~-----------r~i----vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
.++|+++|+..+|||||+.+|++.- ..+ --..-|.|.++-...+++.++.|.++||||
T Consensus 2 ~~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPG------- 74 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPG------- 74 (195)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCC-------
T ss_conf 3799999605886989999999988663444411200100546665058861441899960881699626896-------
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 0001110001210012012059984553212202122320000003576-655894422335415556665420133320
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~ 346 (470)
++.|.. ...+.+..+|.+++|+||.+|+..|.+..+.++...|.+ +|+++||+|+++++. ..+.++.++.+.+.
T Consensus 75 ---H~dF~~-~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~-~~~~v~~ei~~~l~ 149 (195)
T cd01884 75 ---HADYIK-NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEE-LLELVEMEVRELLS 149 (195)
T ss_pred ---HHHHHH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf ---077888-9986351136268998527787478999999999809996279996877898789-99999999999998
Q ss_pred C----CCCCCCCCCCCCCCCCHHH
Q ss_conf 0----4883111234533348589
Q gi|255764471|r 347 Q----IGDIYINTISGRTGEGLDD 366 (470)
Q Consensus 347 ~----~~~~~i~~iSA~~g~gi~~ 366 (470)
. ...+|++++||++|.+..+
T Consensus 150 ~~g~~~~~~p~ip~Sa~~g~~~~~ 173 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred HCCCCCCCCEEEEEEHHHHHCCCC
T ss_conf 429995568299977387535788
No 107
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=99.85 E-value=2.9e-21 Score=162.27 Aligned_cols=163 Identities=29% Similarity=0.375 Sum_probs=126.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+.-|+|||.||||||||++++++.+- -+.++|.||.....|.+.+. +..|.+.|.||+.++.+.. ..+-.+.++.+
T Consensus 158 iADVGLvG~PNaGKSTll~~is~A~p-kIa~YpFTTl~P~lGvv~~~~~~~~~iADiPGLIeGA~~g--~GLG~~FLrHi 234 (429)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADLPGLIEGASEG--VGLGHQFLRHI 234 (429)
T ss_pred ECCCCEEECCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC--CCCCHHHHHHH
T ss_conf 32763364799845789988754897-5578774025766668985698669996267456774468--88668888876
Q ss_pred HHCCEEEEEECCC--CCCCHHH--HHHHHHHHCC-----CCCCCCCHHHHCCCHHHHHHHHHHHH---CCCCCEEEHHHC
Q ss_conf 8779899997598--8776234--4555332102-----33222205652230121001245531---222201001110
Q gi|255764471|r 81 NEAHLILFLIDSK--AGITPYD--HAITSFLRKK-----NIPIIIVSNKMDTRIAQRNFYEIYSL---DFKEIVEISAEH 148 (470)
Q Consensus 81 ~~aD~il~vvD~~--~g~~~~D--~~i~~~lr~~-----~~~~ilv~NK~D~~~~~~~~~e~~~l---g~~~~i~iSA~~ 148 (470)
+.+.++++|+|+. ++-.|.+ ..|.+.|..+ .+|.++|+||+|....++....|.+. +. ++++|||.+
T Consensus 235 eR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~i~~iSa~t 313 (429)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAEENLEEFKEKLAKGK-KVFPISALT 313 (429)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 6246799999787877779899999999999986898726966999976458576999999999753469-789996844
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 22201479999998610123
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYP 168 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~ 168 (470)
|+|+++|++.+.+.+.+...
T Consensus 314 ~egl~~l~~~i~~~l~~~~~ 333 (429)
T PRK12297 314 KQGLDELLYAIAELLEKTPP 333 (429)
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 51999999999999985712
No 108
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.85 E-value=5.9e-22 Score=166.87 Aligned_cols=106 Identities=29% Similarity=0.453 Sum_probs=95.5
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECC
Q ss_conf 25678876520121100024566542023114203406999817110444443000111000121001201205998455
Q gi|255764471|r 215 GKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 (470)
Q Consensus 215 GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viD 294 (470)
|||||+|+|+|+++++||+.||||||.....+++++.++.|+||||+..+.... +.....+++.+++.||++++|+|
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~---~~~~~~~~~~~~~~~d~il~viD 77 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKG---EGELGNRTLEAIEEADLILHVVD 77 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHH---HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 912799999788855552889988463558998899889998378732265046---78889999972345737999999
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 32122021223200000035766558944
Q gi|255764471|r 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 (470)
Q Consensus 295 a~~~~~~qd~~i~~~i~~~~k~~iiv~NK 323 (470)
+++++..+|..+++++.+.++|+++++||
T Consensus 78 ~~~~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 78 ASEGLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999989999999999869988999939
No 109
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.85 E-value=3.9e-21 Score=161.34 Aligned_cols=143 Identities=28% Similarity=0.373 Sum_probs=105.2
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---H-----HHHHHCC--CCCEEEHHHC
Q ss_conf 9987798999975988776234455533210233222205652230121001---2-----4553122--2201001110
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---Y-----EIYSLDF--KEIVEISAEH 148 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~-----e~~~lg~--~~~i~iSA~~ 148 (470)
......+|++|||+-+-..+...++.+.+. ++|+++|+||+|+....... . .+.+.|+ .+++.+||+.
T Consensus 60 i~~~~~lVv~VvDi~Df~gS~~~~l~~~~~--~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lvSa~~ 137 (360)
T TIGR03597 60 LGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK 137 (360)
T ss_pred HCCCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 423683799998641477653464999838--985899998054288767879999999999998599836689996888
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC--
Q ss_conf 222014799999986101234511221000011111122211123343323444303886403564256788765201--
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY-- 226 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~-- 226 (470)
|.|+++|.+.|.+.... -.+-++|.+|||||||+|+|++.
T Consensus 138 g~gi~~l~~~i~~~~~~--------------------------------------~dvyvvG~tNvGKSTliN~Ll~~~~ 179 (360)
T TIGR03597 138 GNGIDELLDKIKKARNK--------------------------------------KDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CCCHHHHHHHHHHHHCC--------------------------------------CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 98999999999987169--------------------------------------9589991686658999999987616
Q ss_pred ---CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCC
Q ss_conf ---21100024566542023114203406999817110444
Q gi|255764471|r 227 ---NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 (470)
Q Consensus 227 ---~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk 264 (470)
++.-||..||||++.+...+. ....++||||+-..
T Consensus 180 ~~~~~~T~S~~PGTTL~~i~i~l~---~~~~i~DTPGi~~~ 217 (360)
T TIGR03597 180 GDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINS 217 (360)
T ss_pred CCCCCEEECCCCCCCCCCEEEECC---CCCEEECCCCCCCH
T ss_conf 777723645899853330787538---99557457765574
No 110
>KOG1489 consensus
Probab=99.84 E-value=4.6e-21 Score=160.86 Aligned_cols=159 Identities=23% Similarity=0.349 Sum_probs=121.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE-EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 0388640356425678876520121100024566542023114203406-999817110444443000111000121001
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~-~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
-.+.+||-||+|||||+|+|..++ +-|.+.|.||--+--..+.|+++. |.+.|-|||-+..+...++-+ .-++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~----~FLrH 271 (366)
T KOG1489 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGY----KFLRH 271 (366)
T ss_pred CCCCEECCCCCCHHHHHHHHHCCC-CCCCCCCEEEECCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCH----HHHHH
T ss_conf 554321289886788987764058-7545542034446411251354514685047653445434676548----99998
Q ss_pred EECCEEEEEECCCCCC---CHHHHHHHHHHHHC------CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2012059984553212---20212232000000------35766558944223354155566654201333200488311
Q gi|255764471|r 283 VRTCETTIVLLDATIP---FEKQDLRIVDSVFN------TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 283 i~~advvi~viDa~~~---~~~qd~~i~~~i~~------~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
|++|++.+||+|.+.+ ---|+.+++..-++ ..||.++|+||+|+.+...+.++++...+... .|
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V 344 (366)
T KOG1489 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HV 344 (366)
T ss_pred HHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC-------CE
T ss_conf 87533489999778755588789999999999998654235853899744673667888999999873798-------17
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 123453334858999999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~ 374 (470)
+++||+++.|+..|++.+.+.
T Consensus 345 ~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489 345 VPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 876400464568899877630
No 111
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=99.84 E-value=4.1e-21 Score=161.25 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=125.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+.-|+|||.||||||||+++|+..+-- +.++|.||--...|.+.+++..|.+.|-|||.++.+.. ..+-.+.++.++
T Consensus 159 iADVGLvG~PNaGKSTLl~~iS~Akpk-IA~YpFTTL~PnLGvv~~~d~~f~iADiPGLIeGAs~g--~GLG~~FLRHie 235 (495)
T PRK12296 159 VADVGLVGFPSAGKSSLISAISAAKPK-IADYPFTTLVPNLGVVSAGDHTFTVADVPGLIPGASEG--RGLGLDFLRHIE 235 (495)
T ss_pred EECCCEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCC--CCCHHHHHHHHH
T ss_conf 613110118999615899887548876-57877554575467897079528998566434650038--984399999875
Q ss_pred HCCEEEEEECCCC---CCCHH-HH-HHHHHHHCC--------------CCCCCCCHHHHCCCHHHHHHH----HHHHHCC
Q ss_conf 7798999975988---77623-44-555332102--------------332222056522301210012----4553122
Q gi|255764471|r 82 EAHLILFLIDSKA---GITPY-DH-AITSFLRKK--------------NIPIIIVSNKMDTRIAQRNFY----EIYSLDF 138 (470)
Q Consensus 82 ~aD~il~vvD~~~---g~~~~-D~-~i~~~lr~~--------------~~~~ilv~NK~D~~~~~~~~~----e~~~lg~ 138 (470)
.+-++++|||+.. +-.|. |. .|.+.|..+ .+|.++|+||||.+..++.+. ++...|+
T Consensus 236 R~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~e~~e~~~~~l~~~g~ 315 (495)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEERGW 315 (495)
T ss_pred HCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 25479999968876667896999999999999719143044332321019659999665675769999999999987499
Q ss_pred CCCEEEHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 220100111022201479999998610123
Q gi|255764471|r 139 KEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 (470)
Q Consensus 139 ~~~i~iSA~~g~Gi~~L~~~i~~~~~~~~~ 168 (470)
++++|||.+++|+++|+..+.+.+.+...
T Consensus 316 -~Vf~ISA~t~eGl~eL~~~l~elv~~~~~ 344 (495)
T PRK12296 316 -PVFEVSTVTREGLRPLSFALAELVSAARA 344 (495)
T ss_pred -CEEEEECCCCCCHHHHHHHHHHHHHHCHH
T ss_conf -57998641003899999999999985620
No 112
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=6.2e-21 Score=159.99 Aligned_cols=166 Identities=25% Similarity=0.280 Sum_probs=128.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+|+|||++|+|||||||+|++... .+.|+-.+|-|.....+.+. |+++.|.||-||...-+..+-+..+. |++.+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS-TLEEV 269 (411)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCE-ECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHH
T ss_conf 97589873234449999988724571-30466642105740489807996499865756715598679999999-89876
Q ss_pred HHCCEEEEEECCCCCCCHHH----HHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 87798999975988776234----45553321023322220565223012100124553122220100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D----~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
.+||++|+|||++++....- ..+...|.-..+|+++|.||+|....+........ +..++++|||++|.|++.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~-~~~~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELER-GSPNPVFISAKTGEGLDLLR 348 (411)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-CCCCEEEEEECCCCCHHHHH
T ss_conf 22777999740688518999999999999748899978999764101573222345663-48974899806675989999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999861012345
Q gi|255764471|r 157 SVIFKIFKQKYPNH 170 (470)
Q Consensus 157 ~~i~~~~~~~~~~~ 170 (470)
+.|...++......
T Consensus 349 ~~i~~~l~~~~~~~ 362 (411)
T COG2262 349 ERIIELLSGLRTEV 362 (411)
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999863124334
No 113
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.4e-20 Score=157.69 Aligned_cols=151 Identities=22% Similarity=0.333 Sum_probs=117.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC---CEEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989---989999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN---GVIFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~---~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
-|.|+++|.---||+||..++-+.+.+ -..--|.|+..=-+.+.+. +..++|+||||- ..|.. |+. +
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-----eAFt~-mRa---R 74 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-----EAFTA-MRA---R 74 (509)
T ss_pred CCEEEEECCCCCCCCCHHHHHHCCCCC-CCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCH-----HHHHH-HHH---C
T ss_conf 988999674358842016667417643-5667850017434999864688652899748957-----88887-875---5
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH--HHHHHHHCCC--------CCEEEHHHC
Q ss_conf 998779899997598877623445553321023322220565223012100--1245531222--------201001110
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN--FYEIYSLDFK--------EIVEISAEH 148 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~--~~e~~~lg~~--------~~i~iSA~~ 148 (470)
..+-+|++++|||+.+|+.|+..+-.+.++..+.|+++++||+|.+..... ..++.+.|+. ..+|+||++
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEECCC
T ss_conf 77544579999975678566179999999877999899985432799887899998877798876618814999743247
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|+++|++.+...
T Consensus 155 g~Gi~eLL~~ill~ 168 (509)
T COG0532 155 GEGIDELLELILLL 168 (509)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 87979999999988
No 114
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=99.84 E-value=3e-20 Score=155.38 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=134.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 44430388640356425678876520121100024566542023114203406999817110444443000111000121
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
..+|+-|+|+|+.++||+||+.+|-+.+ ..-++--|.|..-=-..+.+++.++.|+|||| ||.|+.+|+
T Consensus 114 ~~R~PvVtimGHVDHGKTsLLD~iR~t~-V~~~EaGGITQhIGA~~v~~~~~~itFiDTPG----------HeAFt~mR~ 182 (610)
T PRK12312 114 EKRPPIVTIMGHVDHGKTTLLDTIRKTN-VVASEAGGITQHIGAYQVEYQGKKITFIDTPG----------HEAFTEMRA 182 (610)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCEECEEEEEECCCEEEEECCCC----------HHHHHHHHH
T ss_conf 7889989996772577225889985486-41346776644004499986797689972896----------798999997
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220212232000000357665589442233541-5556665420133320048831112345
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISG 358 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i~~iSA 358 (470)
..+ .-+|++++|++|.+|+.+|+.--++++...+.|+|+++||+|+-... .....++.++-...-.|-.++++++|||
T Consensus 183 RGa-~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSA 261 (610)
T PRK12312 183 RGA-KVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSA 261 (610)
T ss_pred CCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEEC
T ss_conf 077-6545799999757897742699999999759988998504467889878999999870766788579445999036
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 333485899999999999841
Q gi|255764471|r 359 RTGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 359 ~~g~gi~~l~~~i~~~~~~~~ 379 (470)
++|.|+++|+++|.-..+-..
T Consensus 262 ktg~GId~LLe~IlL~AE~le 282 (610)
T PRK12312 262 LKNEGIDELLDSILLLAEILN 282 (610)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 879899999999999999876
No 115
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.6e-21 Score=161.61 Aligned_cols=89 Identities=31% Similarity=0.463 Sum_probs=57.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|++||.||||||||+|+|++.+. -|.++|.||...+-|..+++|.++.++|+||+..+...+ ...-+|+..++..|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~vPG~l~Y~ga~IQild~Pgii~gas~g--~grG~~vls~~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG--RGRGRQVLSVARNA 141 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEECCCCCCEEEECCCEEEEECCCCCCCCCCCC--CCCCCEEEEEECCC
T ss_conf 899976887458999988768876-434567410244574475478169997276312576568--88764654652158
Q ss_pred CEEEEEECCCCC
Q ss_conf 989999759887
Q gi|255764471|r 84 HLILFLIDSKAG 95 (470)
Q Consensus 84 D~il~vvD~~~g 95 (470)
|+|++|+|+...
T Consensus 142 DlIiiVld~~~~ 153 (365)
T COG1163 142 DLIIIVLDVFED 153 (365)
T ss_pred CEEEEEEECCCC
T ss_conf 889999716888
No 116
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=6.1e-21 Score=160.08 Aligned_cols=167 Identities=24% Similarity=0.356 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH-H--HHHHHCCCCCEEEHH
Q ss_conf 9999999999987798999975988776234455533210233222205652230121001-2--455312222010011
Q gi|255764471|r 70 KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-Y--EIYSLDFKEIVEISA 146 (470)
Q Consensus 70 ~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~-~--e~~~lg~~~~i~iSA 146 (470)
....++..+.++.+|+|+.|+||++........+.+++. +++.++|+||+|+....... | .|.+..--.++++|+
T Consensus 22 ~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~ 99 (322)
T COG1161 22 KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSA 99 (322)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHC--CCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999987536676589974312688888730678855--788359985132489999999999998647986557643
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 10222014799999986101234511221000011111122211123343323444303886403564256788765201
Q gi|255764471|r 147 EHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~ 226 (470)
.++.|...+..++.....+..... ...-.....+++.++|.||||||||+|+|+|+
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~------------------------~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k 155 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRL------------------------KKKGLLKRKIRVGVVGYPNVGKSTLINRLLGK 155 (322)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH------------------------HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 346776542588888789999998------------------------64356555608999878976489999998620
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCC
Q ss_conf 211000245665420231142034069998171104444
Q gi|255764471|r 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 (470)
Q Consensus 227 ~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~ 265 (470)
..+.||+.||+|++-.....+ ..+.|+|||||.-..
T Consensus 156 ~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 156 KVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred CCCCCCCCCCEECCCEEEECC---CCEEEEECCCCCCCC
T ss_conf 555237999620451689727---862897388807886
No 117
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=8.7e-20 Score=152.27 Aligned_cols=154 Identities=23% Similarity=0.267 Sum_probs=115.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEE---------ECCC------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 089997189887888999985885010---------2589------8530223899999899899999658842076368
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAV---------VGNH------PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~ai---------v~~~------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
--|+++|....|||||..+|+..-..+ +.|. -|.|-+.....++|.++.|.++||||.. .
T Consensus 3 RNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~-----d 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA-----D 77 (194)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCH-----H
T ss_conf 78999906898799999999997487630465216861475888872876334589999899889999899847-----7
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH--HHHH---H-HHHHCCC--
Q ss_conf 999999999999987798999975988776234455533210233222205652230121--0012---4-5531222--
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ--RNFY---E-IYSLDFK-- 139 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~--~~~~---e-~~~lg~~-- 139 (470)
|...+. .++.-||.+++||||.+|+.++.++.+++++..+.|.++++||+|....+ +... + |.++|+.
T Consensus 78 F~~~~~----~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~ 153 (194)
T cd01891 78 FGGEVE----RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 777898----7764344678986537897589999999998729974998856458988899999999999986399933
Q ss_pred ----CCEEEHHHCC----------CCCHHHHHHHHHHHHH
Q ss_conf ----2010011102----------2201479999998610
Q gi|255764471|r 140 ----EIVEISAEHD----------LGTSELHSVIFKIFKQ 165 (470)
Q Consensus 140 ----~~i~iSA~~g----------~Gi~~L~~~i~~~~~~ 165 (470)
+++++||++| .+++.|+++|...+|+
T Consensus 154 ~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~ 193 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3588578725655335778865646599999999965889
No 118
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=7.9e-21 Score=159.28 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHH---CC-----------------CE----EEE-C-----CCCCCEEEEEEEEEEECCEEEE
Q ss_conf 89997189887888999985---88-----------------50----102-5-----8985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV---KK-----------------KM----AVV-G-----NHPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~---~~-----------------~~----aiv-~-----~~~g~Trd~~~~~~~~~~~~~~ 53 (470)
.|+++|.-..|||||.-+|+ |. +. |.+ . ..-|.|-|.-+..++...+.|.
T Consensus 9 ~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~~~~~ 88 (426)
T PRK12317 9 NLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 88 (426)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCCEEE
T ss_conf 99999522876888876898772994489999999899864877521432125786687558278831699954981699
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC--CCCHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHH-
Q ss_conf 99658842076368999999999999987798999975988--7762344555332102332-2220565223012100-
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKA--GITPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRN- 129 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~--g~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~- 129 (470)
|+|+||-. .+-..|. .++..||++++||||++ |+.++.++-+..++..+.| +++++||+|....++.
T Consensus 89 iiD~PGH~-----~fi~nmi----~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~~~~ 159 (426)
T PRK12317 89 IIDCPGHR-----DFVKNMI----TGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKR 159 (426)
T ss_pred EEECCCCH-----HHHHHHH----HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH
T ss_conf 98789636-----6787787----45346772799996365667647789999999980998399999533356778899
Q ss_pred ----HH---HH-HHHCCC----CCEEEHHHCCCCCHHH
Q ss_conf ----12---45-531222----2010011102220147
Q gi|255764471|r 130 ----FY---EI-YSLDFK----EIVEISAEHDLGTSEL 155 (470)
Q Consensus 130 ----~~---e~-~~lg~~----~~i~iSA~~g~Gi~~L 155 (470)
.. +| ..+|+. .++|+||.+|.|+.+.
T Consensus 160 ~~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~ 197 (426)
T PRK12317 160 YNEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 197 (426)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999999999997098803470887532346564116
No 119
>KOG1489 consensus
Probab=99.83 E-value=7.8e-21 Score=159.33 Aligned_cols=158 Identities=27% Similarity=0.381 Sum_probs=122.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989-99996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~-~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++.|.+||-||+|||||.|+|+..+-+ |.+++.||-..+.|.+.+++.. +.+-|.|||..+.+ ..+.+-.+.++.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nkGlG~~FLrHi 272 (366)
T KOG1489 196 IADVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNKGLGYKFLRHI 272 (366)
T ss_pred ECCCCEECCCCCCHHHHHHHHHCCCCC-CCCCCEEEECCCCCEEECCCCCEEEECCCCCCCCCCC--CCCCCCHHHHHHH
T ss_conf 055432128988678898776405875-4554203444641125135451468504765344543--4676548999988
Q ss_pred HHCCEEEEEECCCCC--CCHHH--HHHHHHHHC-----CCCCCCCCHHHHCCCHHHHHH-HHHH-HHCCCCCEEEHHHCC
Q ss_conf 877989999759887--76234--455533210-----233222205652230121001-2455-312222010011102
Q gi|255764471|r 81 NEAHLILFLIDSKAG--ITPYD--HAITSFLRK-----KNIPIIIVSNKMDTRIAQRNF-YEIY-SLDFKEIVEISAEHD 149 (470)
Q Consensus 81 ~~aD~il~vvD~~~g--~~~~D--~~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~-~e~~-~lg~~~~i~iSA~~g 149 (470)
|.|+.++||||...+ .+|.+ ..+...|.. ..+|.++|+||+|....+... .++. +|.-..++|+||+.+
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred HHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75334899997787555887899999999999986542358538997446736678889999998737981787640046
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2201479999998
Q gi|255764471|r 150 LGTSELHSVIFKI 162 (470)
Q Consensus 150 ~Gi~~L~~~i~~~ 162 (470)
+|+.+|++.+...
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489 353 EGLEELLNGLREL 365 (366)
T ss_pred CCHHHHHHHHHHC
T ss_conf 4568899877630
No 120
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=3.9e-20 Score=154.66 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=104.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHH--HHHHHHH-------------------C------CCCEEEEC-------
Q ss_conf 038864035642567887652012110002--4566542-------------------0------23114203-------
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGS--QSGITRD-------------------S------VSISWNWK------- 249 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~--~~GtTrD-------------------~------i~~~~~~~------- 249 (470)
++|+++|...+|||||+-+|+|.....-.+ .-|.|.+ . ........
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCC
T ss_conf 96999988578799999997085124407888677603111456666511121223101111012442145314565431
Q ss_pred -CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCC-HHHHHHHHHHHHCCCC-CCCEEEECCCC
Q ss_conf -40699981711044444300011100012100120120599845532122-0212232000000357-66558944223
Q gi|255764471|r 250 -NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFNTGH-AVVLALNKWDM 326 (470)
Q Consensus 250 -~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~-~~qd~~i~~~i~~~~k-~~iiv~NK~Dl 326 (470)
.+.|.|+|||| ++.|...+ ......||++++|+||++|+ ..|.+..+.++.-.|. .+|+++||||+
T Consensus 81 ~~r~~tiiD~PG----------H~df~~nm-i~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDl 149 (203)
T cd01888 81 LVRHVSFVDCPG----------HEILMATM-LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred CEEEEEEEECCC----------HHHHHHHH-HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 124799986898----------79999999-9766434766898643667750779999999998499863677507777
Q ss_pred CCCHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 35415--556665420133320048831112345333485899999999
Q gi|255764471|r 327 VSDKL--NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 327 i~~~~--~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
++.+. ...+++...+... ....+|+++|||++|.|+++|+++|.+
T Consensus 150 v~~~~~~~~~~ei~~~l~~~--~~~~~~iIPiSA~~G~NI~~ll~~i~~ 196 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGT--IAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred CCHHHHHHHHHHHHHHHCCC--CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 88678999999999985521--689985999147889799999999986
No 121
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=99.83 E-value=2.2e-20 Score=156.34 Aligned_cols=143 Identities=29% Similarity=0.364 Sum_probs=101.1
Q ss_pred HHHH-HCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH--------HHHHHCC--CCCEEEHH
Q ss_conf 9998-77989999759887762344555332102332222056522301210012--------4553122--22010011
Q gi|255764471|r 78 LAIN-EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY--------EIYSLDF--KEIVEISA 146 (470)
Q Consensus 78 ~ai~-~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~--------e~~~lg~--~~~i~iSA 146 (470)
..+. ...+|++|||.-+-..+...++.+++. ++|+++|+||+|......... ++.+.|+ .+++.+||
T Consensus 66 ~~i~~~~~lvv~VvDi~Df~gS~~~~l~~~ig--~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~dV~lvSa 143 (367)
T PRK13796 66 NGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 143 (367)
T ss_pred HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 86253670899999744577651350898718--9848999982333887678789999999999975998552899946
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 10222014799999986101234511221000011111122211123343323444303886403564256788765201
Q gi|255764471|r 147 EHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~ 226 (470)
++|.|+++|++.|...-.. -.|-+||-+|||||||+|+|+.+
T Consensus 144 k~g~gv~~L~~~i~~~~~~--------------------------------------~dvyvVG~tNvGKSTLiN~ll~~ 185 (367)
T PRK13796 144 QKGQGIDELLDAIEKYREG--------------------------------------RDVYVVGVTNVGKSTLINRIIKE 185 (367)
T ss_pred CCCCCHHHHHHHHHHHCCC--------------------------------------CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 5788999999999986379--------------------------------------85899915757589999999987
Q ss_pred -----CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf -----2110002456654202311420340699981711044
Q gi|255764471|r 227 -----NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 227 -----~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
++.-||..||||.|.+..++. + ...++|||||-.
T Consensus 186 ~~~~~~~iT~S~~PGTTL~~i~ipl~--~-~~~l~DTPGi~~ 224 (367)
T PRK13796 186 ITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGIIH 224 (367)
T ss_pred HCCCCCCEEECCCCCCCCCCEEEECC--C-CCEEECCCCCCC
T ss_conf 16787731344899863031787238--9-856755888667
No 122
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=3.4e-20 Score=155.03 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=107.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 34443038864035642567887652012110002456654202311420340699981711044444300011100012
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
..++.++|.++|.+|||||||+|++.++...-++++.|.+. ..+.+++..+.++||||- |.|...
T Consensus 10 ~~~~~~KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~~----~~~~~~~~~l~iwD~~G~----------e~~~~~- 74 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI----KTLEYEGYKLNIWDVGGQ----------KTLRPY- 74 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEE----EEEEECCEEEEEEECCCC----------CCCCHH-
T ss_conf 44573189999899978899999983999897267057778----999989999999966886----------020058-
Q ss_pred CCEEEECCEEEEEECCCCCCCHHHH--HHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1001201205998455321220212--232---00000035766558944223354155566654201333200488311
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEKQD--LRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~qd--~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
.....+.||++++|+|+++.-+-++ ..+ +......+.|++++.||+|+.+... .+++.+++......-...++
T Consensus 75 ~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~ 152 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS--EEEIREALELDKISSHHWRI 152 (173)
T ss_pred HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHCCCCCCEE
T ss_conf 9997226653899985565788999999999998635415984799987656777889--99999998687445798299
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+++||++|+||+++|+-+.+
T Consensus 153 ~~~SAktG~gI~e~f~wL~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99889669298999999864
No 123
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=8.1e-20 Score=152.50 Aligned_cols=138 Identities=23% Similarity=0.280 Sum_probs=100.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC------CE---------EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHH
Q ss_conf 8999718988788899998588------50---------10258985302238999998998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK------KM---------AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~------~~---------aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 68 (470)
.|+++|.-..|||||.-+|++. .. .--...-|.|-|.-...++..++.|.++|+||-.. +
T Consensus 14 ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~-----f 88 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD-----Y 88 (394)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCHH-----H
T ss_conf 99999512884898998975045450651022223311665562478217841899972883699988897254-----3
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHHH-------HHH-HHHCCC
Q ss_conf 999999999999877989999759887762344555332102332-22205652230121001-------245-531222
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRNF-------YEI-YSLDFK 139 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~~-------~e~-~~lg~~ 139 (470)
-..|.. ....||++++||||++|+.++.++-+..++..+.+ +++|+||+|....++.. .++ ...||.
T Consensus 89 i~nmi~----Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~~g~~ 164 (394)
T PRK12736 89 VKNMIT----GAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HCCEEE----EECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 110444----3534665899998587746779999999998299915999988789983999999999999999876999
Q ss_pred ----CCEEEHHHCCC
Q ss_conf ----20100111022
Q gi|255764471|r 140 ----EIVEISAEHDL 150 (470)
Q Consensus 140 ----~~i~iSA~~g~ 150 (470)
+++++|+..+.
T Consensus 165 ~~~ip~i~~s~~~~~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 120609984543613
No 124
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.82 E-value=5.9e-20 Score=153.43 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=104.1
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 34443038864035642567887652012110002456654202311420340699981711044444300011100012
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
..++.++|.++|.+|||||||+|++.+.+.+.+.++.|.+ ...+++++..+.++||||- |.|...
T Consensus 10 ~~~k~~Ki~llG~~~vGKTsll~~~~~~~~~~~~pTig~~----~~~v~~~~~~~~iwDt~Gq----------e~~~~~- 74 (174)
T pfam00025 10 GLNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFN----VETVTYKNVKFTVWDVGGQ----------ESLRPL- 74 (174)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCE----EEEEEECCEEEEEEECCCC----------CCCCHH-
T ss_conf 7896669999999999889999999549988744746823----8999989999999827987----------023267-
Q ss_pred CCEEEECCEEEEEECCCCCCCHHHH--HHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1001201205998455321220212--2320000---0035766558944223354155566654201333200488311
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEKQD--LRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~qd--~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
.....+.||++++|+|+++.-+-++ .++...+ ...+.|++++.||+||.+... .+++...+......-...++
T Consensus 75 ~~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~--~~ei~~~~~~~~~~~~~~~~ 152 (174)
T pfam00025 75 WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMS--EAEIRELLGLHELKSRPWEI 152 (174)
T ss_pred HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHCCCCCCEE
T ss_conf 9988417826899986786787999999999987542358970899872566767899--99999999786441799689
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+++||++|+||+++|+.+..
T Consensus 153 ~~~SAktG~gI~e~f~~L~~ 172 (174)
T pfam00025 153 QGCSAVTGEGLDEGLDWLSN 172 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988679598999999995
No 125
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=151.26 Aligned_cols=156 Identities=23% Similarity=0.293 Sum_probs=113.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 03886403564256788765201211000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
-+++++|.||||||||+|+|++.+ +-|.+.|.||..+|-..++|+|-+++++|+|||-...+...+- -.+.+..+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~vPG~l~Y~ga~IQild~Pgii~gas~g~gr----G~~vls~~ 138 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR----GRQVLSVA 138 (365)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCC----CCEEEEEE
T ss_conf 389997688745899998876887-6434567410244574475478169997276312576568887----64654652
Q ss_pred ECCEEEEEECCCCCCCHH------------------------------------------HHHHH---------------
Q ss_conf 012059984553212202------------------------------------------12232---------------
Q gi|255764471|r 284 RTCETTIVLLDATIPFEK------------------------------------------QDLRI--------------- 306 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~------------------------------------------qd~~i--------------- 306 (470)
+.||++++|+|+.++... .|..-
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 15888999971688824889999999856768217999659999525987980454566689999999999728363069
Q ss_pred -----------HHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----------0000003--576655894422335415556665420133320048831112345333485899999999
Q gi|255764471|r 307 -----------VDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 307 -----------~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
++.+... -+|++.++||+|+.+.+ ..+.+.+.. +.+++||+++.|+++|.+.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e--~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE--ELERLARKP----------NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EEECCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCHH--HHHHHHHCC----------CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9946886899999984162132368999525566878--899997345----------6289865568798899999998
Q ss_pred HHH
Q ss_conf 999
Q gi|255764471|r 374 INK 376 (470)
Q Consensus 374 ~~~ 376 (470)
...
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred HHC
T ss_conf 748
No 126
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2.1e-20 Score=156.45 Aligned_cols=151 Identities=28% Similarity=0.304 Sum_probs=115.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC-------------------------H-----HHHHHHHHCCCCEEEECCEEEE
Q ss_conf 388640356425678876520121100-------------------------0-----2456654202311420340699
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLT-------------------------G-----SQSGITRDSVSISWNWKNHPIE 254 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~iv-------------------------s-----~~~GtTrD~i~~~~~~~~~~~~ 254 (470)
|++++|...+|||||+-+|+-+--.+- . ..-|.|.|.-...|+++++.|.
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEE
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899981992699
Q ss_pred EEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCHHHH
Q ss_conf 9817110444443000111000121001201205998455321220212232000000357-665589442233541555
Q gi|255764471|r 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH-AVVLALNKWDMVSDKLNL 333 (470)
Q Consensus 255 liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k-~~iiv~NK~Dli~~~~~~ 333 (470)
++|||| ++.|... .......||++++|+||++|+.+|++..+..+...|. .+|+++||||+++.+...
T Consensus 81 iiDtPG----------H~dfi~n-mi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~ 149 (208)
T cd04166 81 IADTPG----------HEQYTRN-MVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCC----------CHHHHHH-HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
T ss_conf 987896----------2889999-99998637747999975888727899999999974998399999885768999899
Q ss_pred HHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCHHH
Q ss_conf 666542013332004--883111234533348589
Q gi|255764471|r 334 LQDLRTKAIKNLPQI--GDIYINTISGRTGEGLDD 366 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~--~~~~i~~iSA~~g~gi~~ 366 (470)
++++..++...+..+ ..++++||||++|.|+-+
T Consensus 150 f~~i~~~~~~~l~~~~~~~~~~IPiSa~~GdNi~~ 184 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
T ss_conf 99999999999997499887199812677888786
No 127
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=99.82 E-value=2.6e-20 Score=155.83 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=91.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE----EEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 8864035642567887652012110002456654202311420340----699981711044444300011100012100
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH----PIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~----~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
|++||.||||||||+|+++..+ .-|.|.|.||--+.=..+++++. +|.+.|-|||-+..+..-++= .+=|+
T Consensus 161 VGLvGfPNAGKSTLLs~~S~Ak-PKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG----~~FLK 235 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAK-PKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLG----HKFLK 235 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCC----HHHHH
T ss_conf 2103578874688888876278-822387874565311289874874168899985686156662688753----35545
Q ss_pred EEECCEEEEEECCCCCC-C---HHH----H-HHHHHHHHC-----CCCCCCEEEECCCCCC
Q ss_conf 12012059984553212-2---021----2-232000000-----3576655894422335
Q gi|255764471|r 282 SVRTCETTIVLLDATIP-F---EKQ----D-LRIVDSVFN-----TGHAVVLALNKWDMVS 328 (470)
Q Consensus 282 ~i~~advvi~viDa~~~-~---~~q----d-~~i~~~i~~-----~~k~~iiv~NK~Dli~ 328 (470)
+|++|.+.++|||++.. + ... | ..|.+.+.. ..||-|||+||||+.+
T Consensus 236 HIERt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 236 HIERTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred HHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf 7520266887980687534242898889999999999975087362780799986067789
No 128
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=5.6e-20 Score=153.55 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=116.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE--------------ECCCCCCEEEEEEEEEEEC-----CEEEEEEECCCCCCCC
Q ss_conf 89997189887888999985885010--------------2589853022389999989-----9899999658842076
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAV--------------VGNHPGITRDRLYGQAIIN-----GVIFNIVDTAGIADGK 64 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~ai--------------v~~~~g~Trd~~~~~~~~~-----~~~~~liDT~G~~~~~ 64 (470)
-++|+..--.|||||-.||+..-..+ +...-|.|-......+.|. ++.++||||||..+
T Consensus 9 Nf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDTPGHVD-- 86 (601)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDTPGHVD-- 86 (601)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCC--
T ss_conf 589999437888889999999709977443233314541557655836978679999884899679999854898566--
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHHHH-HCC--C
Q ss_conf 3689999999999999877989999759887762344555332102332222056522301210--0124553-122--2
Q gi|255764471|r 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEIYS-LDF--K 139 (470)
Q Consensus 65 ~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~~~-lg~--~ 139 (470)
|..++ .+++.-+|.+|+||||.+|+.++....+....+.+.++|.|+||+|.+..+. ...+... +|+ .
T Consensus 87 ---F~~EV----sRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~igl~~~ 159 (601)
T PRK05433 87 ---FSYEV----SRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 159 (601)
T ss_pred ---CCEEE----EEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf ---45045----56033407259999768785600699999999879965777861468889989999999988689647
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2010011102220147999999861012
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~~~~~~ 167 (470)
+++.+||++|.|+++|+++|++.+|...
T Consensus 160 eil~vSAKtG~GV~~lLdaIV~~iP~P~ 187 (601)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (601)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 7777752338887999999997479999
No 129
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=99.81 E-value=4.7e-20 Score=154.06 Aligned_cols=142 Identities=23% Similarity=0.244 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC---------------------CC---EEEE------CCCCCCEEEEEEEEEEECCEEEE
Q ss_conf 899971898878889999858---------------------85---0102------58985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVK---------------------KK---MAVV------GNHPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~---------------------~~---~aiv------~~~~g~Trd~~~~~~~~~~~~~~ 53 (470)
.|+++|.-..|||||.-+|+- +. -|.+ ...-|.|-|.-+..++...+.|.
T Consensus 9 ~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~~~~~ 88 (443)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYYT 88 (443)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCCEEEE
T ss_conf 99999477982888899999873884688999998888871787200044530776676367107347999943988999
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH-------HHHHHHHHHHCCCCC-CCCCHHHHCCCH
Q ss_conf 996588420763689999999999999877989999759887762-------344555332102332-222056522301
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITP-------YDHAITSFLRKKNIP-IIIVSNKMDTRI 125 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~-------~D~~i~~~lr~~~~~-~ilv~NK~D~~~ 125 (470)
++|+||-. .+-..|.. .+..||++++||||+.|..+ +.++-+..++-.+.+ +++++||+|...
T Consensus 89 iiD~PGH~-----~fi~nmi~----Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~ 159 (443)
T PTZ00141 89 VIDAPGHR-----DFIKNMIT----GTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCD 159 (443)
T ss_pred EEECCCHH-----HHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf 99899728-----88999996----3410775899998677852134666786399999999739975999999621566
Q ss_pred HHHHH-----HH---H-HHHCCC----CCEEEHHHCCCCCHH
Q ss_conf 21001-----24---5-531222----201001110222014
Q gi|255764471|r 126 AQRNF-----YE---I-YSLDFK----EIVEISAEHDLGTSE 154 (470)
Q Consensus 126 ~~~~~-----~e---~-~~lg~~----~~i~iSA~~g~Gi~~ 154 (470)
.++.. .+ | .++|+. ..+|+||..|.|+.+
T Consensus 160 ~~e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~ 201 (443)
T PTZ00141 160 YKEDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIE 201 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 609999999999999999739995666189634124665324
No 130
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.81 E-value=3e-20 Score=155.39 Aligned_cols=142 Identities=23% Similarity=0.283 Sum_probs=105.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE--------------------------EEECC------CCCCEEEEEEEEEEECCEE
Q ss_conf 899971898878889999858850--------------------------10258------9853022389999989989
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM--------------------------AVVGN------HPGITRDRLYGQAIINGVI 51 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~--------------------------aiv~~------~~g~Trd~~~~~~~~~~~~ 51 (470)
.++.+|.--.|||||+-||+-.-. |.+-| .-|.|-|.-+..++...+.
T Consensus 9 ~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t~~r~ 88 (613)
T PRK05506 9 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFSTPKRK 88 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEECCCEE
T ss_conf 89999366797888988999981996789999999999981898886035442148888985597168567788438705
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC-CCCCCCHHHHCCCHHHHHH
Q ss_conf 999965884207636899999999999998779899997598877623445553321023-3222205652230121001
Q gi|255764471|r 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMDTRIAQRNF 130 (470)
Q Consensus 52 ~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~-~~~ilv~NK~D~~~~~~~~ 130 (470)
|+++||||. ..+-..|.. +...||++++||||+.|+.++.++-+..+.-.+ +.+++++||||+...++..
T Consensus 89 ~~i~DaPGH-----~~y~rNMit----gAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~~ 159 (613)
T PRK05506 89 FIVADTPGH-----EQYTRNMAT----GASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQEV 159 (613)
T ss_pred EEEECCCCH-----HHHHHHHHH----HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 999428967-----989989998----78653879999988879515518999999872987599998520124781999
Q ss_pred -----HHH----HHHCCCC--CEEEHHHCCCCCHH
Q ss_conf -----245----5312222--01001110222014
Q gi|255764471|r 131 -----YEI----YSLDFKE--IVEISAEHDLGTSE 154 (470)
Q Consensus 131 -----~e~----~~lg~~~--~i~iSA~~g~Gi~~ 154 (470)
.++ .++|+.+ .|||||.+|.|+-.
T Consensus 160 f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~ 194 (613)
T PRK05506 160 FDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVT 194 (613)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEE
T ss_conf 99999999999965799887599673574874767
No 131
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=3.7e-20 Score=154.74 Aligned_cols=175 Identities=20% Similarity=0.228 Sum_probs=122.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC------------------------CH------HHHHHHHHCCCCEEEECCEEEE
Q ss_conf 38864035642567887652012110------------------------00------2456654202311420340699
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL------------------------TG------SQSGITRDSVSISWNWKNHPIE 254 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i------------------------vs------~~~GtTrD~i~~~~~~~~~~~~ 254 (470)
+|+++|..++|||||+-+|+-.--++ +. ..-|.|.|.-...|+++++.|.
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCC-------CHHHHHHHHHHHHCCC-CCCCEEEECCCC
Q ss_conf 98171104444430001110001210012012059984553212-------2021223200000035-766558944223
Q gi|255764471|r 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP-------FEKQDLRIVDSVFNTG-HAVVLALNKWDM 326 (470)
Q Consensus 255 liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~-------~~~qd~~i~~~i~~~~-k~~iiv~NK~Dl 326 (470)
|+|||| ++.|. .....++..||++++|+||.+| ...|.++.+.++.-.| +.+|+++||||+
T Consensus 81 iiDtPG----------H~df~-~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~ 149 (219)
T cd01883 81 ILDAPG----------HRDFV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCC----------CHHHH-HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 987897----------26678-8999877531668999985767510366777659999999998499748999987536
Q ss_pred C--CCHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3--541555666542013332004----8831112345333485899999999999841468978989999999982887
Q gi|255764471|r 327 V--SDKLNLLQDLRTKAIKNLPQI----GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 (470)
Q Consensus 327 i--~~~~~~~~~~~~~~~~~~~~~----~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~p 400 (470)
+ +.+....+++..++...+..+ ..++++||||++|.|+-+--+. -.|-+- .-|.+++..-||
T Consensus 150 v~~~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~~s~~-----m~WY~G-------ptLl~~Ld~~~~ 217 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSEN-----MPWYKG-------PTLLEALDSLEP 217 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC-----CCCCCC-------CHHHHHHHCCCC
T ss_conf 88652599999999999999998299956615999336766304667889-----989878-------169999847899
Q ss_pred CC
Q ss_conf 87
Q gi|255764471|r 401 PT 402 (470)
Q Consensus 401 p~ 402 (470)
|.
T Consensus 218 p~ 219 (219)
T cd01883 218 PE 219 (219)
T ss_pred CC
T ss_conf 89
No 132
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=4.2e-19 Score=147.65 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---------------EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHH
Q ss_conf 89997189887888999985885---------------010258985302238999998998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKK---------------MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~---------------~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 68 (470)
.|+++|.-+.|||||.-+|++.- ..--...-|.|-|.-...++..++.|.++|.||-. .+
T Consensus 14 ni~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PGHe-----~f 88 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-----DY 88 (396)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCCHH-----HH
T ss_conf 9999942688589899998614545246431221221166567437737985699997398059998368668-----87
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCHHHHCCCHHHHHH-------HHH-HHHCCC
Q ss_conf 9999999999998779899997598877623445553321023322-2205652230121001-------245-531222
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDTRIAQRNF-------YEI-YSLDFK 139 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~-ilv~NK~D~~~~~~~~-------~e~-~~lg~~ 139 (470)
-..|.. ....||++++||||++|+.++.++-+..++..+.+. ++++||+|....+... .++ .+.||.
T Consensus 89 iknMI~----Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~~~f~ 164 (396)
T PRK12735 89 VKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHH----CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 766641----0042567999998687875316999999998399858999987588881999999999999999855999
Q ss_pred ----CCEEEHHHCCCC
Q ss_conf ----201001110222
Q gi|255764471|r 140 ----EIVEISAEHDLG 151 (470)
Q Consensus 140 ----~~i~iSA~~g~G 151 (470)
+++++||..+.+
T Consensus 165 ~~~~piv~~S~~~~~~ 180 (396)
T PRK12735 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred CCCCCEEEEEEEECCC
T ss_conf 6647799967337225
No 133
>KOG1145 consensus
Probab=99.81 E-value=3.9e-19 Score=147.86 Aligned_cols=168 Identities=21% Similarity=0.311 Sum_probs=124.5
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHC--CCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 444303886403564256788765201211000245665420--231142034069998171104444430001110001
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS--VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~--i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
.++|.-|.|||+...||.||+.+|-+...+ .++.-|.|... ....+. +|+.+.|.|||| +..|+.+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPG----------HaAF~aM 217 (683)
T KOG1145 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLP-SGKSITFLDTPG----------HAAFSAM 217 (683)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHCCEE-HHHCCCCCCEECEEEEECC-CCCEEEEECCCC----------HHHHHHH
T ss_conf 889986998601357700199887407220-1323771000022999638-997788756874----------7889999
Q ss_pred CCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 21001201205998455321220212232000000357665589442233541-55566654201333200488311123
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
|+..| +-+|++++|+-|.+|+.+|+..-+.++...+.|+|+++||+|.-... .+.++++..+-..--..-.++++++|
T Consensus 218 RaRGA-~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145 218 RARGA-NVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred HHCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 86268-64447999997267756768999998876599789998436789989899999998769327770782369986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 453334858999999999998414
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
||++|.|++.|-+++.-..+-..-
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdL 320 (683)
T KOG1145 297 SALTGENLDLLEEAILLLAEVMDL 320 (683)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 511479868999999999998641
No 134
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=6.8e-20 Score=153.01 Aligned_cols=161 Identities=27% Similarity=0.336 Sum_probs=127.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+|.|.|.||||||||.++|++.+.- |.++|.||+..+.|+++.++.++.+|||||+-+.+-++ -..|.+|+..|+.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-rN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE-RNEIERQAILALR 245 (346)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHH-HCHHHHHHHHHHH
T ss_conf 973898569987589999887548976-67888533654676550487058984288645788577-3689999999999
Q ss_pred H-CCEEEEEECCCC--CCCHHH-HHHHHHHHCC-CCCCCCCHHHHCCCHHH---HHHHHHHHHCCCCCEEEHHHCCCCCH
Q ss_conf 7-798999975988--776234-4555332102-33222205652230121---00124553122220100111022201
Q gi|255764471|r 82 E-AHLILFLIDSKA--GITPYD-HAITSFLRKK-NIPIIIVSNKMDTRIAQ---RNFYEIYSLDFKEIVEISAEHDLGTS 153 (470)
Q Consensus 82 ~-aD~il~vvD~~~--g~~~~D-~~i~~~lr~~-~~~~ilv~NK~D~~~~~---~~~~e~~~lg~~~~i~iSA~~g~Gi~ 153 (470)
. +++|||++|.+. |.+-++ .++++.++.. +.|+++|+||+|....+ .....+..-|..++..+|+..+.|.+
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD 325 (346)
T ss_pred HHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf 74285899976850028999999999999998538876999741012466678999999876326554313543000178
Q ss_pred HHHHHHHHHHH
Q ss_conf 47999999861
Q gi|255764471|r 154 ELHSVIFKIFK 164 (470)
Q Consensus 154 ~L~~~i~~~~~ 164 (470)
.+.+.+...-.
T Consensus 326 ~~~~~v~~~a~ 336 (346)
T COG1084 326 KLREEVRKTAL 336 (346)
T ss_pred HHHHHHHHHHH
T ss_conf 89999988750
No 135
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.80 E-value=4e-20 Score=154.58 Aligned_cols=143 Identities=24% Similarity=0.286 Sum_probs=105.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--------------------------EEEECC------CCCCEEEEEEEEEEECCEE
Q ss_conf 89997189887888999985885--------------------------010258------9853022389999989989
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKK--------------------------MAVVGN------HPGITRDRLYGQAIINGVI 51 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~--------------------------~aiv~~------~~g~Trd~~~~~~~~~~~~ 51 (470)
.++++|.--.|||||+-||+-.- -|.+-| .-|.|-|.-+..++...+.
T Consensus 29 ~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f~t~~r~ 108 (475)
T PRK05124 29 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRK 108 (475)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEEECCCEE
T ss_conf 99999055797788889999981997889999999999982887772224442059988986697169567899538768
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCHHHHCCCHHHHHH
Q ss_conf 9999658842076368999999999999987798999975988776234455533210233-222205652230121001
Q gi|255764471|r 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI-PIIIVSNKMDTRIAQRNF 130 (470)
Q Consensus 52 ~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~-~~ilv~NK~D~~~~~~~~ 130 (470)
|+++|+||-. .+-..|.. +...||++++||||+.|+.++.++-+..++-.+. .+++++||+|....++..
T Consensus 109 ~~i~DaPGH~-----~f~~NMit----Gas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~~~~ 179 (475)
T PRK05124 109 FIIADTPGHE-----QYTRNMAT----GASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEV 179 (475)
T ss_pred EEEEECCCHH-----HHHHHHHH----HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCHHH
T ss_conf 9997379638-----77888988----88767889999989889478889999999865998599998504313543999
Q ss_pred -----HHH----HHHCCC---CCEEEHHHCCCCCHHH
Q ss_conf -----245----531222---2010011102220147
Q gi|255764471|r 131 -----YEI----YSLDFK---EIVEISAEHDLGTSEL 155 (470)
Q Consensus 131 -----~e~----~~lg~~---~~i~iSA~~g~Gi~~L 155 (470)
.++ .++|+. .++||||.+|.|+.+.
T Consensus 180 f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~~ 216 (475)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9999999999999749988850775413457676215
No 136
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=149.05 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=120.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 38864035642567887652012110002456654202311420-34069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
-|.+||-||||||||+|++...+ .-+.+.|.||.-+.-..+.. .+..|.+.|-|||-+..+..-++- .+-+++|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG----~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLG----LRFLRHI 235 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCC----HHHHHHH
T ss_conf 11412589885798998886068-854488653024753079964886079934753235644688763----8888788
Q ss_pred ECCEEEEEECCCCCC--CH-HHHHH-HHHHHHC-----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 012059984553212--20-21223-2000000-----357665589442233541555666542013332004883111
Q gi|255764471|r 284 RTCETTIVLLDATIP--FE-KQDLR-IVDSVFN-----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 284 ~~advvi~viDa~~~--~~-~qd~~-i~~~i~~-----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
++|-+.++|||.+.. .. -+|.. |.+.+.. ..||.++|+||+|+..+... .+....++.+... +.+.+
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~-~~~~~~~l~~~~~---~~~~~ 311 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE-LEELKKALAEALG---WEVFY 311 (369)
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHHCC---CCCCE
T ss_conf 8651547998567656779899999999999985777535856999855577667899-9999999987408---87631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2345333485899999999999841
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~~~ 379 (470)
+|||.+++|++.|+..+.++++...
T Consensus 312 ~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 312 LISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred EEEHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5543102487999999999999756
No 137
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=99.80 E-value=3.4e-20 Score=155.03 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=61.6
Q ss_pred HHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-
Q ss_conf 6654202311420340699981711044444300011100012100120120599845532122021223200000035-
Q gi|255764471|r 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG- 314 (470)
Q Consensus 236 GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~- 314 (470)
|.|.|.-+-.|..+.++|++.|||| ||+|.-+.+-.| ..||+++++|||+.|+.+|+.|..-.+-=.|
T Consensus 65 GITIDVAYRYFsT~KRkFIvADTPG----------HEQYTRNMATGA-ST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGI 133 (411)
T TIGR02034 65 GITIDVAYRYFSTDKRKFIVADTPG----------HEQYTRNMATGA-STADLAVLLVDARKGVLEQTRRHSYIASLLGI 133 (411)
T ss_pred CCEEEEEECCCCCCCCCEEEECCCC----------CCCCCCCCCHHC-CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8612133132577876178840855----------941544300001-31124665542102134567799999886045
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCCCHH
Q ss_conf 7665589442233541555666542013332004---88311123453334858
Q gi|255764471|r 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI---GDIYINTISGRTGEGLD 365 (470)
Q Consensus 315 k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~---~~~~i~~iSA~~g~gi~ 365 (470)
|.+|+++|||||++.+...++.+.+.....-.++ ..+..+|+||++|.|+-
T Consensus 134 rh~VlAVNKmDLvdyd~~vF~~I~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~ 187 (411)
T TIGR02034 134 RHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLAGVRDVTFIPLSALKGDNVV 187 (411)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEE
T ss_conf 389999970111476578899999999999986389834799873313687402
No 138
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=6.5e-19 Score=146.39 Aligned_cols=138 Identities=22% Similarity=0.248 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-------E---------EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 89997189887888999985885-------0---------1025898530223899999899899999658842076368
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKK-------M---------AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~-------~---------aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
.|+++|.-..|||||.-+|++.- . .--...-|.|-|.-...++..++.|.++|+||-. .
T Consensus 14 ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~-----~ 88 (397)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-----D 88 (397)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCCHH-----H
T ss_conf 99999125888999999998666654385310013330257667625816998799997288149995178638-----8
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCHHHHCCCHHHHHH-------HHH-HHHCC
Q ss_conf 99999999999998779899997598877623445553321023322-2205652230121001-------245-53122
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDTRIAQRNF-------YEI-YSLDF 138 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~-ilv~NK~D~~~~~~~~-------~e~-~~lg~ 138 (470)
+-..|.. ....+|++++||||++|+.++.+|-+..++..+.+. ++|+||+|....++.. .++ .+.||
T Consensus 89 fiknmI~----Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~~~~f 164 (397)
T PRK00049 89 YVKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 164 (397)
T ss_pred HHHHHHH----HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999873----012156799999748886652899999999809982799998668888599999999999999984699
Q ss_pred C----CCEEEHHHCCC
Q ss_conf 2----20100111022
Q gi|255764471|r 139 K----EIVEISAEHDL 150 (470)
Q Consensus 139 ~----~~i~iSA~~g~ 150 (470)
. +++++||..+.
T Consensus 165 ~~~~ipiv~~S~~~~~ 180 (397)
T PRK00049 165 PGDDTPIIRGSALKAL 180 (397)
T ss_pred CCCCCCEEEEEEEEEC
T ss_conf 8444768985500311
No 139
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=1.6e-19 Score=150.47 Aligned_cols=142 Identities=24% Similarity=0.267 Sum_probs=100.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC---------------------C---EEEE------CCCCCCEEEEEEEEEEECCEEEE
Q ss_conf 8999718988788899998588---------------------5---0102------58985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK---------------------K---MAVV------GNHPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~---------------------~---~aiv------~~~~g~Trd~~~~~~~~~~~~~~ 53 (470)
.|+++|.-..|||||.-+|+-. . -|.+ ...-|.|-|.-+..++...+.|.
T Consensus 9 ni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~~~~ 88 (449)
T PTZ00336 9 NLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFT 88 (449)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEE
T ss_conf 99999277896888899999874884789999999999871875143254512772232287589867999974984899
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH-------HHHHHHHHHHCCCCC-CCCCHHHHC--C
Q ss_conf 996588420763689999999999999877989999759887762-------344555332102332-222056522--3
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITP-------YDHAITSFLRKKNIP-IIIVSNKMD--T 123 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~-------~D~~i~~~lr~~~~~-~ilv~NK~D--~ 123 (470)
++|+||- ..+-..|.. .+..||++++||||++|..+ +.++-+..++..+.+ +++++||+| .
T Consensus 89 iiD~PGH-----~~fi~nmi~----Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~ 159 (449)
T PTZ00336 89 IIDAPGH-----RDFIKNMIT----GTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKT 159 (449)
T ss_pred EEECCCH-----HHHHHHHHH----HHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9868946-----888999997----6500676799998787741035566775399999998669977999986201566
Q ss_pred CHHHH-----HHHH---H-HHHCCC----CCEEEHHHCCCCCHH
Q ss_conf 01210-----0124---5-531222----201001110222014
Q gi|255764471|r 124 RIAQR-----NFYE---I-YSLDFK----EIVEISAEHDLGTSE 154 (470)
Q Consensus 124 ~~~~~-----~~~e---~-~~lg~~----~~i~iSA~~g~Gi~~ 154 (470)
....+ ...+ | .++|+. ..+||||.+|.|+-+
T Consensus 160 v~~~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~ 203 (449)
T PTZ00336 160 VTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIE 203 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21137899999999999998749990005435420104777532
No 140
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=8.1e-19 Score=145.75 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=118.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE----CCEEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5089997189887888999985885010258985302238999998----998999996588420763689999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGIADGKNCSIAKQMNDQTE 77 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~----~~~~~~liDT~G~~~~~~~~~~~~i~~~~~ 77 (470)
-|.|+|.|.-.-||.||+-+|-.+++| -+..-|.|+..=-+.+++ ++..++|+||||. ..|. .|+.
T Consensus 272 pPVVTIMGHVDHGKTsLLD~iR~t~Va-~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPGH-----eAFt-~MRa--- 341 (770)
T CHL00189 272 PPIVTILGHVDHGKTTLLDAIRKTNIA-QKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPGH-----EAFS-SMRS--- 341 (770)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCEECEEEEEECCCCCCCEEEEECCCCH-----HHHH-HHHH---
T ss_conf 998998577257720378888528851-34567655503529997515788975899559946-----8899-9986---
Q ss_pred HHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHHHHHCC------C--CCEEEHHH
Q ss_conf 999877989999759887762344555332102332222056522301210--0124553122------2--20100111
Q gi|255764471|r 78 LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEIYSLDF------K--EIVEISAE 147 (470)
Q Consensus 78 ~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~------~--~~i~iSA~ 147 (470)
+...-.|++++||.|.+|+.|+..+-.+..+..+.|+|+++||||.+.... ...++.+.|+ | ..++|||+
T Consensus 342 RGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~V~ISAk 421 (770)
T CHL00189 342 RGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPMIPISAL 421 (770)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEEEC
T ss_conf 27866667999996578856727999999987699889998774589988578999999869552223795599996616
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 022201479999998
Q gi|255764471|r 148 HDLGTSELHSVIFKI 162 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~ 162 (470)
+|.|+++|++.|.-.
T Consensus 422 tg~gId~LLE~IlL~ 436 (770)
T CHL00189 422 QGTNIDKLLEMILLL 436 (770)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 798879999999999
No 141
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=5.2e-19 Score=147.04 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=103.0
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 23444303886403564256788765201211000245665420231142034069998171104444430001110001
Q gi|255764471|r 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 198 ~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
....+.++|.++|.+|||||||+|++.+++.+.+.++.|.+ ...+.+++..+.++||||- |++...
T Consensus 9 k~~~~~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~~----~~~v~~~~~~~~lwD~~G~----------~~~~~~ 74 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFN----IKTVQSDGFKLNVWDIGGQ----------RAIRPY 74 (173)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCC----------HHHHHH
T ss_conf 55687758999979999889999998569986606811323----7999989999999855875----------101268
Q ss_pred CCCEEEECCEEEEEECCCCCCC--HHHHHHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2100120120599845532122--0212232---0000003576655894422335415556665420133320048831
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPF--EKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~--~~qd~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
.....+.||++++|+|+++.- .+-...+ +......+.|+++++||+|+..... .+++.+.+....-.-....
T Consensus 75 -~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~--~~eI~~~l~l~~~~~~~~~ 151 (173)
T cd04155 75 -WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWH 151 (173)
T ss_pred -HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--HHHHHHHHCHHHCCCCCCE
T ss_conf -9976555637999996675688999999999997413006983899997666777899--9999998587643488758
Q ss_pred CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112345333485899999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~ 373 (470)
++.+||++|+|+++.++-+.+
T Consensus 152 i~~~SA~tG~Gi~E~f~WL~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999578579398999999854
No 142
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=1.8e-18 Score=143.39 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEC------CCCCCEEEEEEE--------------EEEECCEEEEEEECCCCCCC
Q ss_conf 8999718988788899998588501025------898530223899--------------99989989999965884207
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVG------NHPGITRDRLYG--------------QAIINGVIFNIVDTAGIADG 63 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~------~~~g~Trd~~~~--------------~~~~~~~~~~liDT~G~~~~ 63 (470)
-|+++|.-..|||||..+|++....... ..-|.|-|.-+. ...+.++.|.|+||||.
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH--- 78 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH--- 78 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC---
T ss_conf 89999761789999999998333501221358899779716710013785144221123234677458999877983---
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH---HH----HHH---
Q ss_conf 63689999999999999877989999759887762344555332102332222056522301210---01----245---
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR---NF----YEI--- 133 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~---~~----~e~--- 133 (470)
..+...|.. ++.-||.+++||||.+|+.++.++.+..++..+.|+++|+||+|....+. .. .++
T Consensus 79 --~df~~~~~~----g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~ 152 (192)
T cd01889 79 --ASLIRTIIG----GAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred --HHHHHHHHH----HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --889988888----87432652799987888878999999999985899799997412788157799999999999999
Q ss_pred -HHHCCC--CCEEEHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf -531222--201001110222014799999986101
Q gi|255764471|r 134 -YSLDFK--EIVEISAEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 134 -~~lg~~--~~i~iSA~~g~Gi~~L~~~i~~~~~~~ 166 (470)
..+++. +++||||++|.|+++|.+.+...+|..
T Consensus 153 l~~~~~~~~~iipiSA~~G~gi~eL~~~i~~lip~p 188 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 865389998499957898849899998887618999
No 143
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.78 E-value=7.4e-19 Score=146.02 Aligned_cols=162 Identities=25% Similarity=0.346 Sum_probs=120.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998-9989999965884207636899999999999998
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
--|.+||-||||||||+|+++..+-- +.++|.||.-..-|.+.. .+..|.+-|-||+.++.+.. ..+-.+.++.|+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G--~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG--VGLGLRFLRHIE 236 (369)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCC--CCCCHHHHHHHH
T ss_conf 01141258988579899888606885-448865302475307996488607993475323564468--876388887888
Q ss_pred HCCEEEEEECCCCC--CCHH-H-HHHHHHHHCC-----CCCCCCCHHHHCCCHHHHHHHHHHH-----HCCCCCEEEHHH
Q ss_conf 77989999759887--7623-4-4555332102-----3322220565223012100124553-----122220100111
Q gi|255764471|r 82 EAHLILFLIDSKAG--ITPY-D-HAITSFLRKK-----NIPIIIVSNKMDTRIAQRNFYEIYS-----LDFKEIVEISAE 147 (470)
Q Consensus 82 ~aD~il~vvD~~~g--~~~~-D-~~i~~~lr~~-----~~~~ilv~NK~D~~~~~~~~~e~~~-----lg~~~~i~iSA~ 147 (470)
.+-++++|||.... ..|. | ..|.+.|.++ +||.++|+||+|....++...++.. .+...+.+|||.
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~ 316 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL 316 (369)
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHH
T ss_conf 65154799856765677989999999999998577753585699985557766789999999999874088763155431
Q ss_pred CCCCCHHHHHHHHHHHHHCC
Q ss_conf 02220147999999861012
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~~~ 167 (470)
++.|+++|+..+.+.+.+..
T Consensus 317 t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 317 TREGLDELLRALAELLEETK 336 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 02487999999999999756
No 144
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=3e-18 Score=141.88 Aligned_cols=299 Identities=19% Similarity=0.309 Sum_probs=176.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5089997189887888999985885010258985302238999998-998999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-|.|+|+|.-.-||.||+.+|-..+++ -+..-|.|+.+--+.+++ +|..++|+||||. .-|.. |+. +..
T Consensus 341 ~pvvt~mghvdhgkt~lld~~r~~~v~-~~e~ggitq~iga~~v~~~~~~~itf~dtpgh-----~af~~-mr~---rga 410 (839)
T PRK05306 341 PPVVTIMGHVDHGKTSLLDAIRKTKVA-AGEAGGITQHIGAYQVETENGKKITFLDTPGH-----EAFTA-MRA---RGA 410 (839)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCEEEEEEEEECCCCEEEEECCCCH-----HHHHH-HHH---CCC
T ss_conf 988988577467731489998628753-55678755222349999569987998558855-----88999-986---357
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHHHHHCC------C--CCEEEHHHCCC
Q ss_conf 877989999759887762344555332102332222056522301210--0124553122------2--20100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEIYSLDF------K--EIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~------~--~~i~iSA~~g~ 150 (470)
+-.|++++||.|.+|+.|+..+-.+..+..+.|+|+++||||.+..+. ...++.++|+ | ..++|||++|.
T Consensus 411 ~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~sa~~~~ 490 (839)
T PRK05306 411 QVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPVSAKTGE 490 (839)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEEECCCC
T ss_conf 65436999997777756778999999997499889997404678898899999999849864542894489981515788
Q ss_pred CCHHHHHHHHHHHH-----HCCCCCCHHH-HHCCCCCCCCCC-------------------------CCCCCCCCCCCCC
Q ss_conf 20147999999861-----0123451122-100001111112-------------------------2211123343323
Q gi|255764471|r 151 GTSELHSVIFKIFK-----QKYPNHPLEM-IENNKRNEESPK-------------------------ENITSEGKSSVKN 199 (470)
Q Consensus 151 Gi~~L~~~i~~~~~-----~~~~~~~~e~-~e~~~~~ee~~~-------------------------~~~~~e~~~~~~~ 199 (470)
|+++|++.|.-.-. ..+....... +|..-+.-.-+. .....+.......
T Consensus 491 ~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~g~~~g~vr~m~~~~g~~~~~ 570 (839)
T PRK05306 491 GIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKE 570 (839)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEECCCCCCEEEECCCCCCCCC
T ss_conf 78999999998766520447999861799998775278750589998427132599899810205510158899989871
Q ss_pred CCCCEEEE---EEECCCCCHHHHH------HHHHCCCCCCC------HHHHHHHHHCCCCEEEECC-EEEEE---EECHH
Q ss_conf 44430388---6403564256788------76520121100------0245665420231142034-06999---81711
Q gi|255764471|r 200 ISKPLRIA---VVGRPNVGKSTLI------NRLLGYNRLLT------GSQSGITRDSVSISWNWKN-HPIEI---FDTAG 260 (470)
Q Consensus 200 ~~~~i~~~---~~G~pN~GKStl~------N~l~~~~r~iv------s~~~GtTrD~i~~~~~~~~-~~~~l---iDTaG 260 (470)
.....-|- +=|-|++|-.=+. -+-+-+.|.-- +.....|-|.+...+.-.. +.+.+ .|+-|
T Consensus 571 a~Ps~pv~i~G~~~~P~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~l~~iiK~Dv~G 650 (839)
T PRK05306 571 AGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARKQRVSLENLFAQMKEGEVKELNLILKADVQG 650 (839)
T ss_pred CCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 48987779605678998888778527889999999999999999987553114698898665226742787898527654
Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCC-CHHHHHHHHHHHHCCCCCCCEEEE-CCC
Q ss_conf 04444430001110001210012012059984553212-202122320000003576655894-422
Q gi|255764471|r 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVVLALN-KWD 325 (470)
Q Consensus 261 irkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~-~~~qd~~i~~~i~~~~k~~iiv~N-K~D 325 (470)
++|. +..++..|..-+|-+-++-+..| +++-|..++.- ..++|+.+| +.|
T Consensus 651 ---------s~eA--i~~~l~~~~~~~v~~~ii~~~vG~itesDv~lA~a----s~a~iigFnv~~~ 702 (839)
T PRK05306 651 ---------SVEA--LSDSLEKLSTDEVKVRIIHSGVGAITESDVTLAAA----SNAIIIGFNVRAD 702 (839)
T ss_pred ---------HHHH--HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHH----CCCEEEEECCCCC
T ss_conf ---------3999--99999836887378999951677776878988985----4988999538889
No 145
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=2.5e-18 Score=142.47 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=118.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHCCCCEEEEC------------------CEEEEEEECHHCCC
Q ss_conf 30388640356425678876520121100024-566542023114203------------------40699981711044
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ-SGITRDSVSISWNWK------------------NHPIEIFDTAGMRK 263 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~-~GtTrD~i~~~~~~~------------------~~~~~liDTaGirk 263 (470)
++-|+|+|+..+||+||+.+|-+.+ +++.. -|.|..-=-..+.++ --.+.|+||||
T Consensus 5 ~PIvtimGHVDhGKTsLLD~iR~t~--V~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPG--- 79 (592)
T PRK04004 5 QPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPG--- 79 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCC---
T ss_conf 9889997873777636899986287--73555776232306598412310110344334433234567755765996---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--------------
Q ss_conf 444300011100012100120120599845532122021223200000035766558944223354--------------
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-------------- 329 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~-------------- 329 (470)
||.|+.+|+..+ .-||++++|+||.+|+.+|+.--++++...+.|+|+++||+|.+..
T Consensus 80 -------HeaFt~mR~RGa-~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~ 151 (592)
T PRK04004 80 -------HEAFSNLRKRGG-ALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFK 151 (592)
T ss_pred -------HHHHHHHHHHCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf -------599999997367-457889999977888676279999999975998899986223566677676741123223
Q ss_pred --HHHHHHHHHHHCC---CC--------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --1555666542013---33--------------200488311123453334858999999999998
Q gi|255764471|r 330 --KLNLLQDLRTKAI---KN--------------LPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 330 --~~~~~~~~~~~~~---~~--------------~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
......++.+.+. .. -.|-..++++++||+||.|+++|+..+..+.+.
T Consensus 152 ~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~Laq~ 218 (592)
T PRK04004 152 KQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 218 (592)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 1738899999888888889998728763221454345881489978205689989999999999999
No 146
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=2.7e-18 Score=142.26 Aligned_cols=147 Identities=22% Similarity=0.305 Sum_probs=101.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
-++|+++|.+|||||||+|+|.+...+-+.++.| .....+.+++.++.+-||||-.. + ......++.
T Consensus 14 ~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g----~~~~~v~~~~~~~~lwD~~G~~~-----~----~~~~~~y~~ 80 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRA-----I----RPYWRNYFE 80 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----EEEEEEEECCEEEEEEECCCCHH-----H----HHHHHHHCC
T ss_conf 7589999799998899999985699866068113----23799998999999985587510-----1----268997655
Q ss_pred HCCEEEEEECCCCCC--CHHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHH-CC-C---CCEEEHHHCC
Q ss_conf 779899997598877--623445553321---0233222205652230121--001245531-22-2---2010011102
Q gi|255764471|r 82 EAHLILFLIDSKAGI--TPYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSL-DF-K---EIVEISAEHD 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~--~~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~l-g~-~---~~i~iSA~~g 149 (470)
.||+++||+|+.+.- ......+...|+ ..+.|+++++||+|..... +.+.+..++ .+ + .++++||++|
T Consensus 81 ~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~~~~~~~~~i~~~SA~tG 160 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCCEEEEEECCCC
T ss_conf 56379999966756889999999999974130069838999976667778999999998587643488758999578579
Q ss_pred CCCHHHHHHHHH
Q ss_conf 220147999999
Q gi|255764471|r 150 LGTSELHSVIFK 161 (470)
Q Consensus 150 ~Gi~~L~~~i~~ 161 (470)
.|++|.++++.+
T Consensus 161 ~Gi~E~f~WL~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHHC
T ss_conf 398999999854
No 147
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=5.8e-19 Score=146.75 Aligned_cols=113 Identities=27% Similarity=0.351 Sum_probs=89.6
Q ss_pred EEEECCCCCCHHHHHHHHH---CC--CEEE------ECCCC------CCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 9997189887888999985---88--5010------25898------530223899999899899999658842076368
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLV---KK--KMAV------VGNHP------GITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~---~~--~~ai------v~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
|||+|...+||+||.-+|+ |. +..- ++|+. |.|-......++|++++|.|+||||..+
T Consensus 2 iai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~d----- 76 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD----- 76 (237)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHH-----
T ss_conf 899938998999999999996571222663306830378549989848703105899998998799988988465-----
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH
Q ss_conf 99999999999998779899997598877623445553321023322220565223012
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~ 126 (470)
|..+ +..++.-+|.+++||||.+|+.++.+.+++++++.+.|.++++||+|....
T Consensus 77 F~~e----~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~a 131 (237)
T cd04168 77 FIAE----VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHH----HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 6668----988976348169999658882234499999999859985998624457899
No 148
>KOG1424 consensus
Probab=99.77 E-value=1.3e-18 Score=144.47 Aligned_cols=188 Identities=18% Similarity=0.255 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCC--CCCCCCCHHHHCCCHHHHHH-H-HHH-HHCCCCCEEE
Q ss_conf 99999999999877989999759887762344555332102--33222205652230121001-2-455-3122220100
Q gi|255764471|r 70 KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMDTRIAQRNF-Y-EIY-SLDFKEIVEI 144 (470)
Q Consensus 70 ~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~--~~~~ilv~NK~D~~~~~~~~-~-e~~-~lg~~~~i~i 144 (470)
-++-+|.++.++.+|+|+.+||||.++.-.-..+-.+.... .|..+|++||+|+...+... | +++ .-++ .+++.
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni-~~vf~ 240 (562)
T KOG1424 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNI-PVVFF 240 (562)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHCCC-EEEEE
T ss_conf 89999999987432448999615786315786499997420543124899724531899999999999875497-39997
Q ss_pred HHHC------CCCCHHH---HHHHHHHHHHCCCCCCHH-HHHCCC-CCCCCCC-C-C---CCCCCCCCCCCCCCCEEEEE
Q ss_conf 1110------2220147---999999861012345112-210000-1111112-2-2---11123343323444303886
Q gi|255764471|r 145 SAEH------DLGTSEL---HSVIFKIFKQKYPNHPLE-MIENNK-RNEESPK-E-N---ITSEGKSSVKNISKPLRIAV 208 (470)
Q Consensus 145 SA~~------g~Gi~~L---~~~i~~~~~~~~~~~~~e-~~e~~~-~~ee~~~-~-~---~~~e~~~~~~~~~~~i~~~~ 208 (470)
||.- +.++.+- ++.+..... .......+ .+.... +..+.+. + . ...+.-........-+.|++
T Consensus 241 SA~~at~~~~~~~~~e~~r~~d~~~~~~~-~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~ 319 (562)
T KOG1424 241 SALAATEQLESKVLKEDRRSLDGVSRALG-AIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGF 319 (562)
T ss_pred ECCCCHHCCCCCCHHHHHHCCCCHHHHCC-CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
T ss_conf 41200010465441444422342555405-43224420133320023100256766654421456777777776058875
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 403564256788765201211000245665420231142034069998171104
Q gi|255764471|r 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 209 ~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
||.|||||||+||+|.|.+++-||.+||-|+..-.. + =.-...|.|.||+-
T Consensus 320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi-~--ls~~v~LCDCPGLV 370 (562)
T KOG1424 320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTI-F--LSPSVCLCDCPGLV 370 (562)
T ss_pred ECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEE-E--ECCCCEECCCCCCC
T ss_conf 248887627778887557446663489876403789-7--07876444788721
No 149
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=3.5e-18 Score=141.50 Aligned_cols=146 Identities=19% Similarity=0.276 Sum_probs=101.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
++|.++|.+|||||||+|+|.+....-+.++.|.+ ...+.+++..+.+-||||-.. +. .......+.
T Consensus 15 ~KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~----~~~~~~~~~~l~iwD~~G~e~-----~~----~~~~~y~~~ 81 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQKT-----LR----PYWRNYFES 81 (173)
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCCCC-----CC----HHHHHHHCC
T ss_conf 18999989997889999998399989726705777----899998999999996688602-----00----589997226
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHH-CCC----CCEEEHHHCCC
Q ss_conf 798999975988776--23445553321---0233222205652230121--001245531-222----20100111022
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSL-DFK----EIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~l-g~~----~~i~iSA~~g~ 150 (470)
||+++||+|+.+.-. ..-..+...++ ..+.|+++++||+|..... +.+.+..++ .+. .++++||++|.
T Consensus 82 a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~ 161 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 65389998556578899999999999863541598479998765677788999999998687445798299998896692
Q ss_pred CCHHHHHHHHH
Q ss_conf 20147999999
Q gi|255764471|r 151 GTSELHSVIFK 161 (470)
Q Consensus 151 Gi~~L~~~i~~ 161 (470)
|++++++++.+
T Consensus 162 gI~e~f~wL~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHHC
T ss_conf 98999999864
No 150
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=1.1e-18 Score=144.88 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=82.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
||.++|.+|||||||++++.+.+-.-+.++-|. -...+.+++..+.++||||- |.+... .....+
T Consensus 1 Ki~ilG~~~vGKTsll~~l~~~~~~~~~pTig~----~~~~i~~~~~~l~iwDt~G~----------~~~~~~-~~~y~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGF----NVETVEYKNVSFTVWDVGGQ----------DKIRPL-WKHYYE 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCEECC----CEEEEEECCEEEEEEECCCC----------CCCCHH-HHHHHC
T ss_conf 999999999988999999953998874456074----08999848899999988997----------221448-998727
Q ss_pred CCEEEEEECCCCCC--CHHHHHHHHH---HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 12059984553212--2021223200---000035766558944223354155566654201333200488311123453
Q gi|255764471|r 285 TCETTIVLLDATIP--FEKQDLRIVD---SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 285 ~advvi~viDa~~~--~~~qd~~i~~---~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~ 359 (470)
.||.+++|+|+++. +..-..++.. .....++|++++.||+|+...... .++.+.+......-...+++.+||+
T Consensus 66 ~a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~--~ei~~~l~~~~~~~~~~~~~~~SAk 143 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV--SELIEKLGLEKILGRRWHIQPCSAV 143 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCH--HHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68776899837988899999999999986605576538987605476657899--9999998587510799899999888
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 33485899999999
Q gi|255764471|r 360 TGEGLDDLMVSVLE 373 (470)
Q Consensus 360 ~g~gi~~l~~~i~~ 373 (470)
+|+||+++++.+.+
T Consensus 144 tg~gI~e~f~~L~e 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHHC
T ss_conf 79298999999956
No 151
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=99.77 E-value=4.4e-19 Score=147.52 Aligned_cols=119 Identities=28% Similarity=0.401 Sum_probs=96.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE----EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998----9999965884207636899999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV----IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~----~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
-=|.|||-||||||||+|+++..+-- |+|||.||-..+-|.+.+++. +|++-|-|||.+..+. ..-+=.+-++
T Consensus 159 ADVGLvGfPNAGKSTLLs~~S~AkPK-iAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~--G~GLG~~FLK 235 (296)
T TIGR02729 159 ADVGLVGFPNAGKSTLLSAISNAKPK-IADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASE--GKGLGHKFLK 235 (296)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHC--CCCCCHHHHH
T ss_conf 20210357887468888887627882-23878745653112898748741688999856861566626--8875335545
Q ss_pred HHHHCCEEEEEECCCCC-------CCHHH--HHHHHHHHCC-----CCCCCCCHHHHCCC
Q ss_conf 99877989999759887-------76234--4555332102-----33222205652230
Q gi|255764471|r 79 AINEAHLILFLIDSKAG-------ITPYD--HAITSFLRKK-----NIPIIIVSNKMDTR 124 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g-------~~~~D--~~i~~~lr~~-----~~~~ilv~NK~D~~ 124 (470)
+||++-+++||||+... -.+.+ +.|.+.|+++ +||.++|+||||..
T Consensus 236 HIERt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~ 295 (296)
T TIGR02729 236 HIERTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLL 295 (296)
T ss_pred HHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCC
T ss_conf 752026688798068753424289888999999999997508736278079998606778
No 152
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=1.7e-18 Score=143.57 Aligned_cols=153 Identities=23% Similarity=0.218 Sum_probs=102.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE--EEECCCCCCEEEEEEEEEEE--------------------------CCEEEEEE
Q ss_conf 899971898878889999858850--10258985302238999998--------------------------99899999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAII--------------------------NGVIFNIV 55 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~--aiv~~~~g~Trd~~~~~~~~--------------------------~~~~~~li 55 (470)
-|+.+|.---|||||.-+|+|... .--.-.-|.|-+.=+..+.+ ..+.+.+|
T Consensus 10 NIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is~V 89 (410)
T PRK04000 10 NIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVSFV 89 (410)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 69999651786999998873975423887886488121051010012054555444135302334445554433169999
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHHH---
Q ss_conf 65884207636899999999999998779899997598877-62344555332102332-22205652230121001---
Q gi|255764471|r 56 DTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI-TPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRNF--- 130 (470)
Q Consensus 56 DT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~-~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~~--- 130 (470)
|+||- ..+-..|.. .+.-+|.+|+||||.+|+ .|+.++-+..++..+.+ +++++||+|....+...
T Consensus 90 D~PGH-----e~fi~nMi~----Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~~~~~ 160 (410)
T PRK04000 90 DAPGH-----ETLMATMLS----GAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKALENY 160 (410)
T ss_pred ECCCH-----HHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 79887-----999999984----021266799998657787677149999999980998379999625678989999999
Q ss_pred HHHHHH--C--C--CCCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 245531--2--2--220100111022201479999998610
Q gi|255764471|r 131 YEIYSL--D--F--KEIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 131 ~e~~~l--g--~--~~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
.|..++ | + .+++|+||.+|.|++.|++.+...++.
T Consensus 161 ~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~ 201 (410)
T PRK04000 161 EQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPT 201 (410)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 99999870676568999996477788940899989862778
No 153
>PRK10218 GTP-binding protein; Provisional
Probab=99.76 E-value=1.3e-18 Score=144.30 Aligned_cols=155 Identities=26% Similarity=0.282 Sum_probs=117.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEE---------ECCC------CCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 089997189887888999985885010---------2589------8530223899999899899999658842076368
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAV---------VGNH------PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~ai---------v~~~------~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
--|||++.--.|||||..+|+..--++ +.|. -|.|-......+.|+++.+.||||||..+
T Consensus 6 RNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~D----- 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD----- 80 (607)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC-----
T ss_conf 248999756889889999999972898644541120147868898759726230489960878997865998543-----
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHH---H-HHHHCCC--
Q ss_conf 9999999999999877989999759887762344555332102332222056522301210--012---4-5531222--
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFY---E-IYSLDFK-- 139 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~---e-~~~lg~~-- 139 (470)
|..++ ++++.-+|.+++||||.+|+.++.+.++++-.+.+.|.++|+||+|.+..+. ... | |..|+..
T Consensus 81 F~gEV----eR~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~de 156 (607)
T PRK10218 81 FGGEV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDE 156 (607)
T ss_pred CHHHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 01488----97897668489999788786245899999999879975997216676655357899999988740498567
Q ss_pred ----CCEEEHHHCCCC----------CHHHHHHHHHHHHHC
Q ss_conf ----201001110222----------014799999986101
Q gi|255764471|r 140 ----EIVEISAEHDLG----------TSELHSVIFKIFKQK 166 (470)
Q Consensus 140 ----~~i~iSA~~g~G----------i~~L~~~i~~~~~~~ 166 (470)
+++..||+.|.. +..|+++|++.+|..
T Consensus 157 qld~Pi~~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPaP 197 (607)
T PRK10218 157 QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHCCHHHHHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 74443556554065012682343331360889998548798
No 154
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.76 E-value=8.5e-19 Score=145.62 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=120.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCC------CCEEEEEEEEEEECC--EEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999718988788899998588501025898------530223899999899--899999658842076368999999999
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHP------GITRDRLYGQAIING--VIFNIVDTAGIADGKNCSIAKQMNDQT 76 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~~------g~Trd~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~i~~~~ 76 (470)
||..|.--=||+||+-+|||-...-+.+.| |.|=|.=|..+.+.+ +.+.|||-||-. ..+.. +
T Consensus 3 ~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGHe----~fl~n-----~ 73 (627)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGHE----KFLSN-----A 73 (627)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCHH----HHHHH-----H
T ss_conf 87312445047999998506430123127741025766246042003677777133478559738----99999-----8
Q ss_pred HHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHH--HH----HHH-HHCC---CCCEEEH
Q ss_conf 9999877989999759887762344555332102332-2220565223012100--12----455-3122---2201001
Q gi|255764471|r 77 ELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRN--FY----EIY-SLDF---KEIVEIS 145 (470)
Q Consensus 77 ~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~--~~----e~~-~lg~---~~~i~iS 145 (470)
.-++.-+|.+|+|||+.+|+.++..|-+..|+..+.| .++|+||+|..+.+.. .+ ++- +.++ .++|-||
T Consensus 74 lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~~~~~~S 153 (627)
T TIGR00475 74 LAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNAKIFKTS 153 (627)
T ss_pred HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 66756540100354157788532389999999708961999973467456589999999999998764321157479991
Q ss_pred HHCCCCCHHHHHHHHHHHHHC
Q ss_conf 110222014799999986101
Q gi|255764471|r 146 AEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 146 A~~g~Gi~~L~~~i~~~~~~~ 166 (470)
|.+|+||++|.+.+.+.+...
T Consensus 154 A~tG~Gi~~Lk~~L~~L~e~~ 174 (627)
T TIGR00475 154 AKTGQGIEELKKELKNLLESL 174 (627)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
T ss_conf 346877789999998657776
No 155
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.76 E-value=4.1e-18 Score=141.03 Aligned_cols=91 Identities=27% Similarity=0.441 Sum_probs=72.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE------------------------CCEEEEEEE
Q ss_conf 95089997189887888999985885010258985302238999998------------------------998999996
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII------------------------NGVIFNIVD 56 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~------------------------~~~~~~liD 56 (470)
|.-+++|||-||||||||||+||+.+ +-++++|.+|-|...|.+.. .-.++.++|
T Consensus 1 M~lk~GIVGLPNvGKSTlFnaLT~~~-~~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vD 79 (396)
T PRK09602 1 MMIQIGLVGKPNVGKSTFFSAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELID 79 (396)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEE
T ss_conf 98348888899998899999997799-86458998887784362523368843666543065422135773365589987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 58842076368999999999999987798999975988
Q gi|255764471|r 57 TAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 (470)
Q Consensus 57 T~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~ 94 (470)
.||+..+...+ +..-.|.+..+.++|++++|||+..
T Consensus 80 IAGLVkGAS~G--eGLGNkFLs~IRevDaI~hVVr~~~ 115 (396)
T PRK09602 80 VAGLVPGAHEG--RGLGNQFLDDLRQADALIHVVDASG 115 (396)
T ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHCCEEEEEEECCC
T ss_conf 55567650116--8760899998872687999975358
No 156
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=99.76 E-value=4e-18 Score=141.11 Aligned_cols=186 Identities=25% Similarity=0.293 Sum_probs=128.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE-EEEC-CC---------------CCCEEEEEEEEEEECC----EEEEEEECCCCCCC
Q ss_conf 99971898878889999858850-1025-89---------------8530223899999899----89999965884207
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKM-AVVG-NH---------------PGITRDRLYGQAIING----VIFNIVDTAGIADG 63 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~-aiv~-~~---------------~g~Trd~~~~~~~~~~----~~~~liDT~G~~~~ 63 (470)
||||=.-==||+||.-+|+.+-. ..-+ +. =|.|==.+-..+.|+| ..+++|||||
T Consensus 4 IAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG---- 79 (609)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG---- 79 (609)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC----
T ss_conf 8999880699436898888876588641588321354067652100155201300366252889718997781689----
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH-----HHH-HHHHC
Q ss_conf 636899999999999998779899997598877623445553321023322220565223012100-----124-55312
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN-----FYE-IYSLD 137 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~-----~~e-~~~lg 137 (470)
|++|..++ ++.|...|.||+||||.+|+.|+.+++++.--+.+-+.|||+||+|.+.+... ..| |.+||
T Consensus 80 -HADFGGEV----ERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~Lg 154 (609)
T TIGR01394 80 -HADFGGEV----ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELG 154 (609)
T ss_pred -CCCCCCEE----EEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf -88788658----8733024058999857888988534789999956893699971347887883788757878888538
Q ss_pred CC------CCEEEHHHCCC---------------CCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22------20100111022---------------2014799999986101234511221000011111122211123343
Q gi|255764471|r 138 FK------EIVEISAEHDL---------------GTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSS 196 (470)
Q Consensus 138 ~~------~~i~iSA~~g~---------------Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~ 196 (470)
-. ++++-||+.|. .+..|.+.|+.+.|... ...++-.+.....
T Consensus 155 A~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~----------------~~~d~PlQmlvt~ 218 (609)
T TIGR01394 155 ADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPK----------------GDLDEPLQMLVTN 218 (609)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC----------------CCCCCCHHHEEEE
T ss_conf 880010125676652367201446657788722017899989864068889----------------8887624210001
Q ss_pred CCCCCCCEEEEEEECCCCCH
Q ss_conf 32344430388640356425
Q gi|255764471|r 197 VKNISKPLRIAVVGRPNVGK 216 (470)
Q Consensus 197 ~~~~~~~i~~~~~G~pN~GK 216 (470)
.+-.+.--||+| ||--.|+
T Consensus 219 ldy~~y~GRI~~-GRv~~G~ 237 (609)
T TIGR01394 219 LDYDEYLGRIAI-GRVHRGT 237 (609)
T ss_pred CCCCCCCCEEEE-EEEEECE
T ss_conf 101467766999-9875056
No 157
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=1.1e-18 Score=144.94 Aligned_cols=138 Identities=22% Similarity=0.236 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE---------------EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHH
Q ss_conf 899971898878889999858850---------------10258985302238999998998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM---------------AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~---------------aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 68 (470)
.|+++|.-..|||||.-+|++... .--...-|.|.|.-+..++...+.|.++|+||- ..+
T Consensus 14 ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PGH-----~~f 88 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH-----ADY 88 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCCH-----HHH
T ss_conf 999995458839999999864530045133431553237976873694488024899628759999867967-----899
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-HHHHCCCHHHHHH-------HHH-HHHCCC
Q ss_conf 9999999999998779899997598877623445553321023322220-5652230121001-------245-531222
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV-SNKMDTRIAQRNF-------YEI-YSLDFK 139 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv-~NK~D~~~~~~~~-------~e~-~~lg~~ 139 (470)
-..|.. ....||.+++||||++|+.++.++-+.+++..+.|.++| +||+|....+... .++ ...||.
T Consensus 89 v~nmi~----Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~~g~~ 164 (409)
T CHL00071 89 VKNMIT----GAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDKYDFP 164 (409)
T ss_pred HHHHHH----HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999875----2301581289998687885004999999997399936555556798548999999999999999973998
Q ss_pred ----CCEEEHHHCCC
Q ss_conf ----20100111022
Q gi|255764471|r 140 ----EIVEISAEHDL 150 (470)
Q Consensus 140 ----~~i~iSA~~g~ 150 (470)
.++|+||..|.
T Consensus 165 ~~~i~~vp~sa~~~~ 179 (409)
T CHL00071 165 GDEIPIVAGSALLAL 179 (409)
T ss_pred CCCCEEEECCHHHHH
T ss_conf 455608965213323
No 158
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.76 E-value=7.7e-18 Score=139.16 Aligned_cols=147 Identities=21% Similarity=0.253 Sum_probs=99.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|+++|.+|||||||+|++.+.+.+-+.++-| .....+.+++..+.+.||||-.. +. .+ .......
T Consensus 15 ~Ki~llG~~~vGKTsll~~~~~~~~~~~~pTig----~~~~~v~~~~~~~~iwDt~Gqe~-----~~-~~---~~~y~~~ 81 (174)
T pfam00025 15 MRILILGLDNAGKTTILYKLKLGEIVTTIPTIG----FNVETVTYKNVKFTVWDVGGQES-----LR-PL---WRNYFPN 81 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCCCC-----CC-HH---HHHHHCC
T ss_conf 699999999998899999995499887447468----23899998999999982798702-----32-67---9988417
Q ss_pred CCEEEEEECCCCCCCHH--HHHHHHHHHC---CCCCCCCCHHHHCCCHHH--HHHHHHH---HH-CCC-CCEEEHHHCCC
Q ss_conf 79899997598877623--4455533210---233222205652230121--0012455---31-222-20100111022
Q gi|255764471|r 83 AHLILFLIDSKAGITPY--DHAITSFLRK---KNIPIIIVSNKMDTRIAQ--RNFYEIY---SL-DFK-EIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~--D~~i~~~lr~---~~~~~ilv~NK~D~~~~~--~~~~e~~---~l-g~~-~~i~iSA~~g~ 150 (470)
||+++||+|+.+.-+-. -..+...++. .+.|+++|.||+|..... ....+.. .. +.. .++++||++|.
T Consensus 82 a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~~~~~~SAktG~ 161 (174)
T pfam00025 82 TDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKSRPWEIQGCSAVTGE 161 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 82689998678678799999999998754235897089987256676789999999999786441799689999886795
Q ss_pred CCHHHHHHHHHH
Q ss_conf 201479999998
Q gi|255764471|r 151 GTSELHSVIFKI 162 (470)
Q Consensus 151 Gi~~L~~~i~~~ 162 (470)
|++++.+++...
T Consensus 162 gI~e~f~~L~~~ 173 (174)
T pfam00025 162 GLDEGLDWLSNY 173 (174)
T ss_pred CHHHHHHHHHHH
T ss_conf 989999999953
No 159
>KOG0462 consensus
Probab=99.76 E-value=2.8e-18 Score=142.16 Aligned_cols=155 Identities=23% Similarity=0.351 Sum_probs=118.6
Q ss_pred EEEEECCCCCCHHHHHHHHH---CC-------CEE----EECCCCCCEEEEEEEEEEECC---EEEEEEECCCCCCCCHH
Q ss_conf 89997189887888999985---88-------501----025898530223899999899---89999965884207636
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV---KK-------KMA----VVGNHPGITRDRLYGQAIING---VIFNIVDTAGIADGKNC 66 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~---~~-------~~a----iv~~~~g~Trd~~~~~~~~~~---~~~~liDT~G~~~~~~~ 66 (470)
-++||-.---|||||..||+ |. ++. -|...-|.|--.....+.|.+ +-+.||||||..+
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD---- 137 (650)
T KOG0462 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD---- 137 (650)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCCCC----
T ss_conf 1379998427701689999998287788875566424544566528478751237999758732887505898555----
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH-----HHHHHHHCCCCC
Q ss_conf 899999999999998779899997598877623445553321023322220565223012100-----124553122220
Q gi|255764471|r 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN-----FYEIYSLDFKEI 141 (470)
Q Consensus 67 ~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~-----~~e~~~lg~~~~ 141 (470)
|..++ .+.+..+|-+|+||||.+|+.++....+..--+.+..+|.|+||+|.+..+.. +.+.+.+.-.++
T Consensus 138 -Fs~EV----sRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462 138 -FSGEV----SRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred -CCCEE----HEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf -54100----0126535715999976768128899999999985974888653157898898999999999866896124
Q ss_pred EEEHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 10011102220147999999861012
Q gi|255764471|r 142 VEISAEHDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 142 i~iSA~~g~Gi~~L~~~i~~~~~~~~ 167 (470)
+.+||++|.|+.+++++|+..+|...
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462 213 IYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 88870257568889999996379998
No 160
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.76 E-value=2e-18 Score=143.16 Aligned_cols=155 Identities=22% Similarity=0.362 Sum_probs=123.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCH--------------HHHHHHHHCCCCEEEEC----C--EEEEEEECHHCCC
Q ss_conf 03886403564256788765201211000--------------24566542023114203----4--0699981711044
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTG--------------SQSGITRDSVSISWNWK----N--HPIEIFDTAGMRK 263 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs--------------~~~GtTrD~i~~~~~~~----~--~~~~liDTaGirk 263 (470)
-+.||+=+-.+|||||--+|+..-.++-. ..=|.|.-+-.++++|+ | +.++||||||
T Consensus 4 RNFsIIAHIDHGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPG--- 80 (598)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPG--- 80 (598)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCC---
T ss_conf 52678846248932488999986174562025430577510000058201156347533753388788996452889---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 44430001110001210012012059984553212202122320000003576655894422335415556665420133
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~ 343 (470)
|++.+.| |.||++|++. +|||+||++|+.-|++.-+-+++|++.-+|-|+||+||-..+- +..+.++.+
T Consensus 81 --HVDFsYE---VSRSLAACEG---ALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adp---e~v~~eIe~ 149 (598)
T TIGR01393 81 --HVDFSYE---VSRSLAACEG---ALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADP---ERVKKEIEE 149 (598)
T ss_pred --CCCCCHH---HHHHHHHHCC---EEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH---HHHHHHHHH
T ss_conf --7212737---8888887164---0356141032358889999887561875847782536888885---899998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 320048831112345333485899999999
Q gi|255764471|r 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
-+. ++-...+.+|||||.||++|+++|.+
T Consensus 150 ~iG-ld~~~ai~~SAKtG~Gi~e~LEaIv~ 178 (598)
T TIGR01393 150 VIG-LDASEAILASAKTGIGIEEILEAIVK 178 (598)
T ss_pred HCC-CCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 418-89643038750367888999889710
No 161
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.75 E-value=2.5e-18 Score=142.44 Aligned_cols=116 Identities=25% Similarity=0.381 Sum_probs=90.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----C----------EEEECCCC------CCEEEEEEEEEEECCEEEEEEECCCCC
Q ss_conf 08999718988788899998588-----5----------01025898------530223899999899899999658842
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKK-----K----------MAVVGNHP------GITRDRLYGQAIINGVIFNIVDTAGIA 61 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~-----~----------~aiv~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~ 61 (470)
-.|||+|.+.+||+||.-+|+-. + ...++|+- |.|-...-..++|+|+.++|+||||..
T Consensus 11 RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPGh~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCH
T ss_conf 77999937898989999999974675244846631467886467885889975964861517786789899999098946
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH
Q ss_conf 076368999999999999987798999975988776234455533210233222205652230121
Q gi|255764471|r 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 (470)
Q Consensus 62 ~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~ 127 (470)
+ |.+. +.+++.-+|.+++|+||..|+.++.+.+++.++..+.|+++++||+|....+
T Consensus 91 D-----F~~e----~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad 147 (526)
T PRK00741 91 D-----FSED----TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred H-----HHHH----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 7-----7899----9999987375999997775523336899999886399889999656767898
No 162
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.75 E-value=2.8e-18 Score=142.13 Aligned_cols=114 Identities=28% Similarity=0.404 Sum_probs=90.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CEEE------ECCCC------CCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 999718988788899998588-----5010------25898------530223899999899899999658842076368
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKK-----KMAV------VGNHP------GITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~-----~~ai------v~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
|||+|...+||+||.-+|+-. +.-- |+|+- |.|-......++|+++++.|+||||..+
T Consensus 2 i~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~D----- 76 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD----- 76 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHH-----
T ss_conf 899908999989999999996699665765458973577878898679675135578888997999986989757-----
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH
Q ss_conf 999999999999987798999975988776234455533210233222205652230121
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~ 127 (470)
|..+ +..++.-+|.+++|+||.+|+..+.+.+++++++.+.|.++++||+|....+
T Consensus 77 F~~e----~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad 132 (268)
T cd04170 77 FVGE----TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERAD 132 (268)
T ss_pred HHHH----HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9999----9998404783999941875476879999999998599989999787878996
No 163
>KOG2484 consensus
Probab=99.74 E-value=5.9e-18 Score=139.95 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=105.4
Q ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH-HCCC-CCCCCCHHHHCCCHHHHH-HHH-HHHHCCCCCEEEHHHCCCC
Q ss_conf 99999877989999759887762344555332-1023-322220565223012100-124-5531222201001110222
Q gi|255764471|r 76 TELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKN-IPIIIVSNKMDTRIAQRN-FYE-IYSLDFKEIVEISAEHDLG 151 (470)
Q Consensus 76 ~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~l-r~~~-~~~ilv~NK~D~~~~~~~-~~e-~~~lg~~~~i~iSA~~g~G 151 (470)
....++-+|+||.|+|||+++..--.++=+++ +..+ |..|+|+||+|....+.. .|- +.+--+..+.+..+....+
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 99998651057886305588777775699999745687249999502104888899999999985588631661530002
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 01479999998610123451122100001111112221112334332344430388640356425678876520121100
Q gi|255764471|r 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 (470)
Q Consensus 152 i~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~iv 231 (470)
.....-.-...+. .+. .....-..+........++++|+|.|||||||++|+|.....+-|
T Consensus 220 ~~~~~~~~s~c~g-------ae~------------l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v 280 (435)
T KOG2484 220 SNSKNLQSSVCFG-------AET------------LMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNV 280 (435)
T ss_pred CCCCCCCCCHHHH-------HHH------------HHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 4311122101110-------999------------999854733366667416864324888771699999877404667
Q ss_pred HHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 0245665420231142034069998171104
Q gi|255764471|r 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 232 s~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
++.||.|| +.+..+-+..+.|+|.||+-
T Consensus 281 g~~pGvT~---smqeV~Ldk~i~llDsPgiv 308 (435)
T KOG2484 281 GNVPGVTR---SMQEVKLDKKIRLLDSPGIV 308 (435)
T ss_pred CCCCCCHH---HHHHEECCCCCEECCCCCEE
T ss_conf 78755003---54530056773230478632
No 164
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.3e-17 Score=137.55 Aligned_cols=91 Identities=33% Similarity=0.435 Sum_probs=75.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC------------------EEEEEEECCCCCC
Q ss_conf 9508999718988788899998588501025898530223899999899------------------8999996588420
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING------------------VIFNIVDTAGIAD 62 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~------------------~~~~liDT~G~~~ 62 (470)
|..+++|||.||||||||||+||... +-..++|.+|=|...|.+...+ .++.|+|.+|+..
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
T ss_conf 98426774189885888999997489-64248985426577327964736789998753899747761048998245378
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 76368999999999999987798999975988
Q gi|255764471|r 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 (470)
Q Consensus 63 ~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~ 94 (470)
+.+.+ +.+-.|-+..|.++|.+++|||+..
T Consensus 80 GAs~G--eGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 80 GASKG--EGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCC--CCCCHHHHHHHHHCCEEEEEEEECC
T ss_conf 85468--8864787876551485899998538
No 165
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.74 E-value=1.5e-17 Score=137.27 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|.++|.+|||||||++++.+..-.-+ .| |....+..+.+++..+.+.||||-.. + +.........|
T Consensus 1 Ki~ilG~~~vGKTsll~~l~~~~~~~~--~p--Tig~~~~~i~~~~~~l~iwDt~G~~~-----~----~~~~~~y~~~a 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNVSFTVWDVGGQDK-----I----RPLWKHYYENT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCC--CC--EECCCEEEEEECCEEEEEEECCCCCC-----C----CHHHHHHHCCC
T ss_conf 999999999988999999953998874--45--60740899984889999998899722-----1----44899872768
Q ss_pred CEEEEEECCCCCCC--HHHHHHHHHHH---CCCCCCCCCHHHHCCCHHHH--HHHHHHH---HCCC--CCEEEHHHCCCC
Q ss_conf 98999975988776--23445553321---02332222056522301210--0124553---1222--201001110222
Q gi|255764471|r 84 HLILFLIDSKAGIT--PYDHAITSFLR---KKNIPIIIVSNKMDTRIAQR--NFYEIYS---LDFK--EIVEISAEHDLG 151 (470)
Q Consensus 84 D~il~vvD~~~g~~--~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~~--~~~e~~~---lg~~--~~i~iSA~~g~G 151 (470)
|.++||+|+.+.-+ .....+.+.++ ..++|++++.||+|...... ...+... +.-. .++++||++|.|
T Consensus 68 ~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 77689983798889999999999998660557653898760547665789999999985875107998999998887929
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
+++..+++.+
T Consensus 148 I~e~f~~L~e 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHC
T ss_conf 8999999956
No 166
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.73 E-value=6.1e-18 Score=139.82 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=90.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
||+++|.|+||||||+|++++.+- .....|.++.|.....+.+++.+ +.++||||. |.|... ....
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------e~~~~~-~~~~ 68 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQNKF-PEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQ----------ERFRAL-RPLY 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHH-HHHH
T ss_conf 989999799779999999961999-9874774135567899999999999999978987----------204678-8998
Q ss_pred EECCEEEEEECCCCCCCHHHH-HHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 201205998455321220212-23200000---03576655894422335415556665420133320048831112345
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQD-LRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd-~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA 358 (470)
++.||++++|+|+++.-+-+. ..+.+.+. ..+.|+++|.||.|+.+++.-..++... +..-.++|.+.+||
T Consensus 69 ~~~ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~-----~a~~~~~~y~e~Sa 143 (162)
T pfam00071 69 YRGAQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEA-----LAKELGLPFMETSA 143 (162)
T ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHH-----HHHHHCCEEEEECC
T ss_conf 6257655042348988999999999999998579886288997524746518899999999-----99980997999737
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 3334858999999999
Q gi|255764471|r 359 RTGEGLDDLMVSVLEI 374 (470)
Q Consensus 359 ~~g~gi~~l~~~i~~~ 374 (470)
++|.||+++|+.+.+-
T Consensus 144 k~g~gI~~~F~~i~~~ 159 (162)
T pfam00071 144 KTNENVEEAFEELARE 159 (162)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 8882999999999999
No 167
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=6.4e-18 Score=139.68 Aligned_cols=115 Identities=28% Similarity=0.413 Sum_probs=88.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH---C---CCEEE---------ECCCC------CCEEEEEEEEEEECCEEEEEEECCCCC
Q ss_conf 089997189887888999985---8---85010---------25898------530223899999899899999658842
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLV---K---KKMAV---------VGNHP------GITRDRLYGQAIINGVIFNIVDTAGIA 61 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~---~---~~~ai---------v~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~ 61 (470)
-.|||+|...+||+||.-+|+ | +.-++ |+|+. |.|-......++|++.+|+|+||||..
T Consensus 3 Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCCH
T ss_conf 17999847999989999999986686333854630368886046887999865944863637887899899999796977
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH
Q ss_conf 07636899999999999998779899997598877623445553321023322220565223012
Q gi|255764471|r 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 62 ~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~ 126 (470)
+ |..+ +..++.-+|.+++||||.+|+..+.+.+++++++.++|.++++||+|....
T Consensus 83 D-----F~~e----~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~a 138 (267)
T cd04169 83 D-----FSED----TYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred H-----HHHH----HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 8-----9999----999998864547995256665355899999999729997999853456789
No 168
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=9.3e-18 Score=138.62 Aligned_cols=171 Identities=21% Similarity=0.273 Sum_probs=110.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH---------------HCCCCE--E--------EECCEEEEEEECH
Q ss_conf 38864035642567887652012110002456654---------------202311--4--------2034069998171
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR---------------DSVSIS--W--------NWKNHPIEIFDTA 259 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr---------------D~i~~~--~--------~~~~~~~~liDTa 259 (470)
+|||+|+..+||+||+.+|+...-.+....+|.+| .+-... + ..+++.+.|||||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred HCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC-----CHHH--
Q ss_conf 104444430001110001210012012059984553212202122320000003576655894422335-----4155--
Q gi|255764471|r 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-----DKLN-- 332 (470)
Q Consensus 260 Girkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~-----~~~~-- 332 (470)
| +.+..-| ..++++-||.+++|+||.+|+..|++.+++++.+++.|+|+++||+|.+- ...+
T Consensus 82 G-----H~dF~~e------v~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day 150 (222)
T cd01885 82 G-----HVDFSSE------VTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAY 150 (222)
T ss_pred C-----HHHHHHH------HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHH
T ss_conf 5-----6989999------9999985681799610457857789999999998599979999890365001179989999
Q ss_pred -----HHHHHHHHCC---------CCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf -----5666542013---------332004883----1112345333485899999999999841468978989999999
Q gi|255764471|r 333 -----LLQDLRTKAI---------KNLPQIGDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 (470)
Q Consensus 333 -----~~~~~~~~~~---------~~~~~~~~~----~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~ 394 (470)
..+++...+. .......+. +++|.||+.|.++.- -+-+.+-.+|..+
T Consensus 151 ~~l~~iie~vN~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l---------------~~fa~ly~ll~~i 215 (222)
T cd01885 151 QRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI---------------IKFARIYAVLEMV 215 (222)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCC---------------CCHHHHHHHHHHH
T ss_conf 9999999999999987230433035532102077778389998323771267---------------5412189999999
Q ss_pred HHHCCCC
Q ss_conf 9828878
Q gi|255764471|r 395 QLQNPPP 401 (470)
Q Consensus 395 ~~~~~pp 401 (470)
++.-|||
T Consensus 216 v~~iP~P 222 (222)
T cd01885 216 VKHLPSP 222 (222)
T ss_pred HHHCCCC
T ss_conf 9628998
No 169
>PRK10218 GTP-binding protein; Provisional
Probab=99.73 E-value=9.6e-17 Score=131.78 Aligned_cols=176 Identities=22% Similarity=0.252 Sum_probs=122.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCC-----CH----------HHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 3038864035642567887652012110-----00----------24566542023114203406999817110444443
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLL-----TG----------SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i-----vs----------~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
.-+|||+++..+|||||..+|+..--.+ +. ..-|.|.-+-.+.+.|+++.+.+||||| +.
T Consensus 5 IRNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPG-----H~ 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG-----HA 79 (607)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC-----CC
T ss_conf 4248999756889889999999972898644541120147868898759726230489960878997865998-----54
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH-HHHHHHH---HCCC
Q ss_conf 00011100012100120120599845532122021223200000035766558944223354155-5666542---0133
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRT---KAIK 343 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~-~~~~~~~---~~~~ 343 (470)
+.+.| +.|++ +-+|-|++|+||.+|+..|.+....++.+.+.+.|+++||+|+...+.. ...++.+ .+..
T Consensus 80 DF~gE---VeR~L---~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a 153 (607)
T PRK10218 80 DFGGE---VERVM---SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA 153 (607)
T ss_pred CCHHH---HHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 30148---89789---7668489999788786245899999999879975997216676655357899999988740498
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 320048831112345333485899999999999841468978989999999982887877
Q gi|255764471|r 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 (470)
Q Consensus 344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~ 403 (470)
.-.++ ..|+++.||++|..-...-+.. ..+--+|..+++.-|+|..
T Consensus 154 ~deql-d~Pi~~asa~~G~a~~~~~~~~-------------~dl~pLldaIv~~IPaP~~ 199 (607)
T PRK10218 154 TDEQL-DFPIVYASALNGIAGLDHEDMA-------------EDMTPLYQAIVDHVPAPDV 199 (607)
T ss_pred CHHHH-CCHHHHHHHHCCEECCCHHHHH-------------HHCCHHHHHHHHHCCCCCC
T ss_conf 56774-4435565540650126823433-------------3136088999854879899
No 170
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=4.5e-17 Score=133.98 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=111.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC------CE-----EE----ECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHH
Q ss_conf 8999718988788899998588------50-----10----258985302238999998998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK------KM-----AV----VGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~------~~-----ai----v~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 68 (470)
-|+++|....|||||..+|++. .. ++ -.-.-|.|-+.....+++.++.|.++||||.. .|
T Consensus 4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~-----dF 78 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----DY 78 (195)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHH-----HH
T ss_conf 9999960588698999999998866344441120010054666505886144189996088169962689607-----78
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC-CCHHHHCCCHHHHH-------HHHH-HHHCCC
Q ss_conf 99999999999987798999975988776234455533210233222-20565223012100-------1245-531222
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII-IVSNKMDTRIAQRN-------FYEI-YSLDFK 139 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~i-lv~NK~D~~~~~~~-------~~e~-~~lg~~ 139 (470)
...|. .++..+|.+++||||.+|+.++.++.+..++..+.|.+ +++||+|....++. ..++ .++|+.
T Consensus 79 ~~~~i----~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMI----TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998----63511362689985277874789999999998099962799968778987899999999999999842999
Q ss_pred ----CCEEEHHHCCC----------CCHHHHHHHHHHHHH
Q ss_conf ----20100111022----------201479999998610
Q gi|255764471|r 140 ----EIVEISAEHDL----------GTSELHSVIFKIFKQ 165 (470)
Q Consensus 140 ----~~i~iSA~~g~----------Gi~~L~~~i~~~~~~ 165 (470)
+++|+||..|. |+..|+++|.+..|.
T Consensus 155 ~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~ 194 (195)
T cd01884 155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred CCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 5568299977387535788875536999999999964899
No 171
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.73 E-value=2.6e-17 Score=135.60 Aligned_cols=179 Identities=26% Similarity=0.389 Sum_probs=153.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989-9999658842076368999999999999987
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~-~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.++++|+||+|||||.|.+.|.+.+++++.+.+||..+.+...-+..+ ..++||||+.......+...+...+..++.+
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKHKLGELLNKEARSALGG 81 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 11211577653366777663241010023101234332001223665515786258765124567788888888753123
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCC-HHHHHHHHHH----HHCCC--CCEEEHHHCCCCCHHH
Q ss_conf 798999975988776234455533210233222205652230-1210012455----31222--2010011102220147
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR-IAQRNFYEIY----SLDFK--EIVEISAEHDLGTSEL 155 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~-~~~~~~~e~~----~lg~~--~~i~iSA~~g~Gi~~L 155 (470)
.|+++|++|+.......|..+...++....|+++.+|+.|.. ..+.....+. ...+. +++++|+.++.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (278)
T TIGR00436 82 VDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLDKYAGLEDFKPWPIVPISALKGDNTEEL 161 (278)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCHHHHH
T ss_conf 22688986334455640468898765202101001223331010356777776665542046752011011210005778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCC
Q ss_conf 999999861012345112210000111
Q gi|255764471|r 156 HSVIFKIFKQKYPNHPLEMIENNKRNE 182 (470)
Q Consensus 156 ~~~i~~~~~~~~~~~~~e~~e~~~~~e 182 (470)
...+...+++.+...+.+...+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (278)
T TIGR00436 162 KAFLEAKLPEGPFYYPEDYVTDRPERF 188 (278)
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCCHHH
T ss_conf 888775303343226502203650236
No 172
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=9.9e-18 Score=138.43 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-----EC------C------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHH
Q ss_conf 89997189887888999985885010-----25------8------9853022389999989989999965884207636
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAV-----VG------N------HPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~ai-----v~------~------~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~ 66 (470)
-|+|+|.--.||+||.-+|+-...++ |. | .-|.|=..-...+.|+++.++||||||..+
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHvD---- 85 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHID---- 85 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCC----
T ss_conf 8999917998989999999997499875871547874478829999749877621599988998999980979743----
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH
Q ss_conf 899999999999998779899997598877623445553321023322220565223012
Q gi|255764471|r 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 67 ~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~ 126 (470)
|..++ ..|+.-+|.+|+||||.+|+.++.+.+++++.+.+.|.++++||+|....
T Consensus 86 -F~~Ev----~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~ 140 (687)
T PRK13351 86 -FTGEV----ERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGA 140 (687)
T ss_pred -HHHHH----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf -09999----99999878689999789998688999999999879985999979778998
No 173
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=9.1e-18 Score=138.67 Aligned_cols=114 Identities=25% Similarity=0.296 Sum_probs=89.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE------E-----EECCCC------CCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 99971898878889999858850------1-----025898------530223899999899899999658842076368
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKM------A-----VVGNHP------GITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~------a-----iv~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
|||+|...+||+||.-+|+-.-. + -|+|+. |.|-......++|+++++.|+||||..+
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~D----- 76 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD----- 76 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH-----
T ss_conf 899968999988999999986687355815538975566848898768707336689998998999986969678-----
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH
Q ss_conf 999999999999987798999975988776234455533210233222205652230121
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~ 127 (470)
|..+ +..++.-+|.+++||||.+|+.++.+.+++++++.+.|.++++||+|....+
T Consensus 77 F~~e----~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad 132 (270)
T cd01886 77 FTIE----VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHH----HHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 8999----9999877555999984676442636999988998499989999887877887
No 174
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=1e-17 Score=138.27 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=93.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|.+|||||||+|+++..+ ..-...|-...|.....+.+++.. +.++||||. |.|...+ ..
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~~-f~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~----------e~~~~l~-~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFRSIT-PS 68 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHHH-HH
T ss_conf 989999969968999999997099-99984886664799999999999999999978982----------6577889-99
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-32000000---357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
.++.||++++|+|.++.-+-+.. .....+.+ .+.|+++|.||+||.+++.-..++...... -..++.+.+|
T Consensus 69 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~-----~~~~~~~e~S 143 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETS 143 (159)
T ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHH-----HCCCEEEEEC
T ss_conf 97541275672448988999999999999998689888269999745630116899999999999-----8699799987
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 5333485899999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLE 373 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~ 373 (470)
|++|.||+++|+.+.+
T Consensus 144 Ak~~~~i~~~F~~i~~ 159 (159)
T cd00154 144 AKTGENVEELFQSLAE 159 (159)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 6888198999999869
No 175
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=1.2e-17 Score=137.83 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=89.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 38864035642567887652012110-00245665420231142034069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL-TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i-vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
.|+++|-+|||||||+|++.+.+-.. +.++-|.+ ...+.+++..+.++|||| .|+|... ....+
T Consensus 1 ~I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~----~~~i~~~~~~l~iwDt~G----------~e~~~~l-~~~y~ 65 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFN----MRKVTKGNVTLKVWDLGG----------QPRFRSM-WERYC 65 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCC----------HHHHHHH-HHHHH
T ss_conf 98999999986999999997599988616732505----899998999999997983----------5877999-99874
Q ss_pred ECCEEEEEECCCCCCCHHHH--HHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 01205998455321220212--232---0000003576655894422335415556665420133320048831112345
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQD--LRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd--~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA 358 (470)
+.||++++|+|+++.-+-+. .++ +......+.|++++.||+||.+.... +++.+.+......-...+++.+||
T Consensus 66 ~~~~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SA 143 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 686368751577878899999999999985443489828988835676434789--999999999987349987999979
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 333485899999999
Q gi|255764471|r 359 RTGEGLDDLMVSVLE 373 (470)
Q Consensus 359 ~~g~gi~~l~~~i~~ 373 (470)
++|.||+++++-+.+
T Consensus 144 ktg~gI~e~f~wL~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 689698999999965
No 176
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=1.7e-17 Score=136.79 Aligned_cols=150 Identities=20% Similarity=0.284 Sum_probs=96.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC-----HH-------------HHHHHHHCCCCEEEECC-----EEEEEEECHHC
Q ss_conf 388640356425678876520121100-----02-------------45665420231142034-----06999817110
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLT-----GS-------------QSGITRDSVSISWNWKN-----HPIEIFDTAGM 261 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~iv-----s~-------------~~GtTrD~i~~~~~~~~-----~~~~liDTaGi 261 (470)
+|||+|...+|||||+.+|+.....+. .. .-|.|..+-...+.+.+ +.+.|+||||
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG- 80 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG- 80 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC-
T ss_conf 5999827898989999999997344555404442113575164665420355861459999825667505787788987-
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-CC-----H-----
Q ss_conf 444443000111000121001201205998455321220212232000000357665589442233-54-----1-----
Q gi|255764471|r 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SD-----K----- 330 (470)
Q Consensus 262 rkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli-~~-----~----- 330 (470)
+.+..-| ..++++-+|.+++|+||.+|+..|++.+++++.+.+.|+|+++||+|.+ -+ .
T Consensus 81 ----H~dF~~e------v~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~ 150 (213)
T cd04167 81 ----HVNFMDE------VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred ----CHHHHHH------HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHH
T ss_conf ----2417999------998886377679999878887577999999999869998999988234314406998999998
Q ss_pred -HHHHHHHHHHCCCCCCC------CCCCCCCCCCCCCCCCHH
Q ss_conf -55566654201333200------488311123453334858
Q gi|255764471|r 331 -LNLLQDLRTKAIKNLPQ------IGDIYINTISGRTGEGLD 365 (470)
Q Consensus 331 -~~~~~~~~~~~~~~~~~------~~~~~i~~iSA~~g~gi~ 365 (470)
....+++...+...... -..-+++|.||+.|++..
T Consensus 151 ~~~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ft 192 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEEC
T ss_conf 999999999999970787351656887969999700052123
No 177
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=5.3e-17 Score=133.51 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=103.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+.++|.++|-.|||||||++++...+..-+.++.|. -...+++++..+.++||||= |.|-.. ..
T Consensus 15 kk~~kililGl~~sGKTsil~~l~~~~~~~~~pTvg~----~~~~~~~~~~~l~iwD~~Gq----------e~~r~l-w~ 79 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF----NVETVEYKNLKFTMWDVGGQ----------DKLRPL-WR 79 (182)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----CEEEEEECCEEEEEEECCCC----------CCCCHH-HH
T ss_conf 8747999996799889999999962997773786884----56999978889999989998----------454747-87
Q ss_pred EEEECCEEEEEECCCCCC--CHHHHHHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212--202122320000---003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIP--FEKQDLRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~--~~~qd~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.-.+.||.+++|+|+++. +.+--..+...+ .-.++|++|+.||.|+.+... ..++.+++......-....+..
T Consensus 80 ~yy~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~--~~ei~~~l~l~~~~~~~~~i~~ 157 (182)
T PTZ00133 80 HYYQNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMS--TTEVTEKLGLHSVRQRNWYIQG 157 (182)
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCC--HHHHHHHHCHHHHHCCCCEEEE
T ss_conf 60567644999996678789999999999997144224885999970668778889--9999999695556159958998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34533348589999999999984
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
+||++|.|+++.++-+.+..++.
T Consensus 158 ~SA~tG~Gi~e~f~wL~~~ikk~ 180 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
T ss_conf 25758949899999999999986
No 178
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=2.6e-17 Score=135.56 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=63.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC---CCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 88640356425678876520121---100024566542023114203406999817110444443000111000121001
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNR---LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r---~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
|.++|-+|||||||+|++..... ....+...+|...-...+++++..+.++|||| .|+|... ....
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~G----------qe~~~~l-~~~y 70 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGG----------QESLRSL-WDKY 70 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCC----------CHHHHHH-HHHH
T ss_conf 9999999988889999887503676777655403531326899998999999996898----------7888789-9874
Q ss_pred EECCEEEEEECCCCCCC--HHHHHHHH---HHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 20120599845532122--02122320---000003576655894422335415556665420133320--048831112
Q gi|255764471|r 283 VRTCETTIVLLDATIPF--EKQDLRIV---DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP--QIGDIYINT 355 (470)
Q Consensus 283 i~~advvi~viDa~~~~--~~qd~~i~---~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~--~~~~~~i~~ 355 (470)
.+.||.+++|+|+++.- .+--.++. ......+.|++++.||+|+-.... .+++.+.+..... .-...+++.
T Consensus 71 ~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~~~~~~~~~~~~~~~~~~ 148 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLVLP 148 (167)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 289878999986686788999999999975110248962999970667665778--999999999999985469989999
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 34533348589999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVL 372 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~ 372 (470)
+||++|.|+++.++-+.
T Consensus 149 ~SAktG~Gv~e~f~wL~ 165 (167)
T cd04160 149 VSALEGTGVREGIEWLV 165 (167)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 88782949899999996
No 179
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.2e-18 Score=138.65 Aligned_cols=140 Identities=26% Similarity=0.346 Sum_probs=99.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECC--------------------------------CCCCEEEEEEEEEEECCEE
Q ss_conf 89997189887888999985885010258--------------------------------9853022389999989989
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGN--------------------------------HPGITRDRLYGQAIINGVI 51 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~--------------------------------~~g~Trd~~~~~~~~~~~~ 51 (470)
...-+|.--=|||||+-||+-.-.++-.+ .-|.|-|.-|..+.-..++
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRk 87 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRK 87 (431)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCE
T ss_conf 68975353686023244655310110577999875213123677875452563325688886496599876410366630
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHH---HHHHHHCCCCCCCCCHHHHCCCHHHH
Q ss_conf 999965884207636899999999999998779899997598877623445---55332102332222056522301210
Q gi|255764471|r 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA---ITSFLRKKNIPIIIVSNKMDTRIAQR 128 (470)
Q Consensus 52 ~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~---i~~~lr~~~~~~ilv~NK~D~~~~~~ 128 (470)
|++.||||... ....|.- ....||+++++||||.|+.++.+. |+.+|. -+.+++++||+|+...++
T Consensus 88 FIiADTPGHeQ-----YTRNMaT----GASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 88 FIIADTPGHEQ-----YTRNMAT----GASTADLAILLVDARKGVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred EEEECCCCHHH-----HHHHHHC----CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECCCCCCH
T ss_conf 89845996798-----7642223----623003799999642216777677899999728--767999974101235678
Q ss_pred H-----HHHHH----HHCCCC--CEEEHHHCCCCCHH
Q ss_conf 0-----12455----312222--01001110222014
Q gi|255764471|r 129 N-----FYEIY----SLDFKE--IVEISAEHDLGTSE 154 (470)
Q Consensus 129 ~-----~~e~~----~lg~~~--~i~iSA~~g~Gi~~ 154 (470)
. ..||. +||+.. ++|+||..|.++..
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCC
T ss_conf 9999999999999997699852477432304875334
No 180
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=1.2e-16 Score=131.22 Aligned_cols=154 Identities=22% Similarity=0.156 Sum_probs=101.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE---------EEECCC------------CCCEEEE--------EEEEEEEC------
Q ss_conf 899971898878889999858850---------102589------------8530223--------89999989------
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM---------AVVGNH------------PGITRDR--------LYGQAIIN------ 48 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~---------aiv~~~------------~g~Trd~--------~~~~~~~~------ 48 (470)
-|+++|.-..|||||.-+|+|... .++-.. .+..++. ........
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 69999885787999999970851244078886776031114566665111212231011110124421453145654311
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCHHHHCCCHH
Q ss_conf 989999965884207636899999999999998779899997598877-62344555332102332-2220565223012
Q gi|255764471|r 49 GVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI-TPYDHAITSFLRKKNIP-IIIVSNKMDTRIA 126 (470)
Q Consensus 49 ~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~-~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~ 126 (470)
.+.|.|+||||- ..+...|.. ...-||++++||||.+|+ .++.++-+..++..+.+ +++++||+|....
T Consensus 82 ~r~~tiiD~PGH-----~df~~nmi~----Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~ 152 (203)
T cd01888 82 VRHVSFVDCPGH-----EILMATMLS----GAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred EEEEEEEECCCH-----HHHHHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 247999868987-----999999997----66434766898643667750779999999998499863677507777886
Q ss_pred HHHH---HHH----HHHCCC--CCEEEHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 1001---245----531222--201001110222014799999986101
Q gi|255764471|r 127 QRNF---YEI----YSLDFK--EIVEISAEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 127 ~~~~---~e~----~~lg~~--~~i~iSA~~g~Gi~~L~~~i~~~~~~~ 166 (470)
+... .+. .+++++ +++||||++|.|+++|++.|.+.+|..
T Consensus 153 ~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~P 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7899999999998552168998599914788979999999998678299
No 181
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=5e-17 Score=133.67 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=101.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 43038864035642567887652012110002456654202311420340699981711044444300011100012100
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+..+|.++|-+|||||||+++|...+-.-+.++.|... ..+.+++..+.++||||- |.|... ...
T Consensus 14 k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~----~~i~~~~~~~~iwD~~G~----------e~~~~~-~~~ 78 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQ----------ESLRSS-WNT 78 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCC----------CCCCCH-HHH
T ss_conf 77999999899998899999997399277167236046----999978889999989998----------656622-677
Q ss_pred EEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220--21223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
-.+.||.+++|+|+++.-+ .-...+...+. -.+.|++|+.||.|+-+... .+++.+++......-....+..+
T Consensus 79 y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~~~~ 156 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISESLGLTSIRDHTWHIQGC 156 (174)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7057753799997678889999999999997261016982899995555655789--99999997477763598099996
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 4533348589999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVL 372 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~ 372 (470)
||++|.|+++.++-+.
T Consensus 157 SAktG~Gv~e~f~wLa 172 (174)
T cd04153 157 CALTGEGLPEGLDWIA 172 (174)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 6858919899999986
No 182
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=2.2e-17 Score=136.08 Aligned_cols=87 Identities=29% Similarity=0.484 Sum_probs=67.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE---------------------CC---EEEEEEECCCC
Q ss_conf 9997189887888999985885010258985302238999998---------------------99---89999965884
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII---------------------NG---VIFNIVDTAGI 60 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~---------------------~~---~~~~liDT~G~ 60 (470)
|+|||.||||||||||+||... +-++++|.||-|...|.... ++ .++.|+|-||+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~-~~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGL 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHH
T ss_conf 9344889898899999997799-851279966767741620055688416664330433120147740033267521001
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 2076368999999999999987798999975988
Q gi|255764471|r 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 (470)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~ 94 (470)
..+.+.+ +..-.|.+..+.+||++++|||+..
T Consensus 80 V~GAskG--~GLGNkFL~~iRe~DaiihVVd~sg 111 (318)
T cd01899 80 VPGAHEG--KGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred HCCCCCC--CCCHHHHHHHHHHCCEEEEEEECCC
T ss_conf 0566457--7665999999984788999850478
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.71 E-value=3.1e-17 Score=135.09 Aligned_cols=157 Identities=24% Similarity=0.402 Sum_probs=118.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCH--------------HHHHHHHHCCCCEEEEC---C--EEEEEEECHHCCC
Q ss_conf 303886403564256788765201211000--------------24566542023114203---4--0699981711044
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTG--------------SQSGITRDSVSISWNWK---N--HPIEIFDTAGMRK 263 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs--------------~~~GtTrD~i~~~~~~~---~--~~~~liDTaGirk 263 (470)
.-+++|+.+-.+|||||..+|+..--.+-. ..-|.|.-+-...+.|+ | +.+.||||||
T Consensus 7 IRNf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDTPG--- 83 (601)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDTPG--- 83 (601)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECCCC---
T ss_conf 45589999437888889999999709977443233314541557655836978679999884899679999854898---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 44430001110001210012012059984553212202122320000003576655894422335415556665420133
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~ 343 (470)
|++.+.| |.||+++ ||.+++|+||++|+..|+.....++.+.+.++|.++||+|+-..+.+ ...+++..
T Consensus 84 --HVDF~~E---VsRSL~a---ceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e---~v~~qi~~ 152 (601)
T PRK05433 84 --HVDFSYE---VSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPE---RVKQEIED 152 (601)
T ss_pred --CCCCCEE---EEEEHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHH---HHHHHHHH
T ss_conf --5664504---5560334---07259999768785600699999999879965777861468889989---99999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3200488311123453334858999999999
Q gi|255764471|r 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
.+. +....++.+||++|.|+++|+++|++-
T Consensus 153 ~ig-l~~~eil~vSAKtG~GV~~lLdaIV~~ 182 (601)
T PRK05433 153 IIG-IDASDAVLVSAKTGIGIEEVLEAIVER 182 (601)
T ss_pred HHC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 868-964777777523388879999999974
No 184
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.4e-16 Score=130.67 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=132.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE---CCEEEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 43038864035642567887652012110002456654202311420---340699981711044444300011100012
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW---KNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~---~~~~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
+++-|++||+...||+||+.++-+.. ..-++--|.|...=-..+.+ ++..+.|+|||| +|.|+.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG----------HeAFt~mR 72 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG----------HEAFTAMR 72 (509)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHCCC-CCCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCC----------HHHHHHHH
T ss_conf 89889996743588420166674176-43566785001743499986468865289974895----------78888787
Q ss_pred CCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 10012012059984553212202122320000003576655894422335415-55666542013332004883111234
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL-NLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~-~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
+..+ +-+|++++|+|+.+|+.+|+.--++++...+.|+|+++||+|..+... ....++.++-...-.|-..+.++++|
T Consensus 73 aRGa-~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvS 151 (509)
T COG0532 73 ARGA-SVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVS 151 (509)
T ss_pred HCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEE
T ss_conf 5577-544579999975678566179999999877999899985432799887899998877798876618814999743
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 53334858999999999998414
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
|++|.|+++|+..+.-+.+.+.-
T Consensus 152 A~tg~Gi~eLL~~ill~aev~el 174 (509)
T COG0532 152 AKTGEGIDELLELILLLAEVLEL 174 (509)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24787979999999988899864
No 185
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=99.71 E-value=1.3e-17 Score=137.57 Aligned_cols=181 Identities=21% Similarity=0.188 Sum_probs=134.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC-CCCH-HH---------------HHHHHHCCCCEEEECC----EEEEEEECHHCCC
Q ss_conf 388640356425678876520121-1000-24---------------5665420231142034----0699981711044
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNR-LLTG-SQ---------------SGITRDSVSISWNWKN----HPIEIFDTAGMRK 263 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r-~ivs-~~---------------~GtTrD~i~~~~~~~~----~~~~liDTaGirk 263 (470)
+|||+=+..+||+||+-.||.+-- ..=. .. =|+|.=|--+.+.|+| ..+.+|||||
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG--- 79 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG--- 79 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC---
T ss_conf 18999880699436898888876588641588321354067652100155201300366252889718997781689---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH----HHHHHHH
Q ss_conf 444300011100012100120120599845532122021223200000035766558944223354155----5666542
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN----LLQDLRT 339 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~----~~~~~~~ 339 (470)
|-+.+=| |-|=+..+ |.|+||+||.||..+|++-++..+++.|.+.|||+||+|.-+.+-. ..-++..
T Consensus 80 --HADFGGE---VERvL~MV---DGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~ 151 (609)
T TIGR01394 80 --HADFGGE---VERVLGMV---DGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFI 151 (609)
T ss_pred --CCCCCCE---EEEECEEE---EEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf --8878865---88733024---058999857888988534789999956893699971347887883788757878888
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 013332004883111234533348589999999999984146897898999999998288787787
Q gi|255764471|r 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 (470)
Q Consensus 340 ~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~~g 405 (470)
.+...-.|++| |++|-||+.|.--...-+ --..-....|--++..++.+-|+|...-
T Consensus 152 ~LgA~deQLDF-P~vYASa~~G~A~l~~~~--------dg~~~~~~~m~PLFd~I~~hvPaP~~~~ 208 (609)
T TIGR01394 152 ELGADDEQLDF-PIVYASARAGWASLDKDK--------DGLDDDSEDMAPLFDAILRHVPAPKGDL 208 (609)
T ss_pred HCCCCCCCCCH-HHHHHHHCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 53888001012-567665236720144665--------7788722017899989864068889888
No 186
>PRK12739 elongation factor G; Reviewed
Probab=99.70 E-value=3.9e-17 Score=134.42 Aligned_cols=115 Identities=25% Similarity=0.296 Sum_probs=88.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEE-----EEC------C------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCH
Q ss_conf 08999718988788899998588501-----025------8------985302238999998998999996588420763
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMA-----VVG------N------HPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~a-----iv~------~------~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~ 65 (470)
--|+|+|.--.||+||.-+|+-.... -|. | .-|.|-...-..+.|+++.|+|+||||..+
T Consensus 11 RNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPGHvD--- 87 (693)
T PRK12739 11 RNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPGHVD--- 87 (693)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCCCCH---
T ss_conf 39999907998989999999997698565733438975687809998759867455277845998999994969740---
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH
Q ss_conf 6899999999999998779899997598877623445553321023322220565223012
Q gi|255764471|r 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 66 ~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~ 126 (470)
|..++ ..|+.-+|.+|+||||-+|+.++.+.+++++.+.+.|.++++||+|....
T Consensus 88 --F~~EV----~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~a 142 (693)
T PRK12739 88 --FTIEV----ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 142 (693)
T ss_pred --HHHHH----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf --58999----99999848799999789887677999999999869896999979788999
No 187
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=6.4e-17 Score=132.96 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE-EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 430388640356425678876520121100024566542023114-2034069998171104444430001110001210
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~-~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
+.++|.++|-+|||||||++++...+-.-+.++.|..-..+.... ..++..+.++|||| .|.|-.. ..
T Consensus 2 ~~~kIvilG~~~~GKTsil~r~~~~~f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaG----------qe~~r~l-~~ 70 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGG----------QEKLRPL-WK 70 (183)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCC----------CCCCCEE-HH
T ss_conf 679999999999988999999964986776870355789999961678667999997898----------7345100-87
Q ss_pred EEEECCEEEEEECCCCCCCHHHH--HH---HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCC
Q ss_conf 01201205998455321220212--23---2000000357665589442233541555666542013-332004883111
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQD--LR---IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYIN 354 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd--~~---i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 354 (470)
.-.+.||.+++|+|+++.-+-++ .+ +.......+.|++|+.||.||..... ..++...+. ..+......++.
T Consensus 71 ~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~~i~ 148 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCEEE
T ss_conf 67467867899996776889999999999997321237962999986677766878--8999999719998666998999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23453334858999999999998
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
.+||++|.||++.|+.+.+..-.
T Consensus 149 ~tSA~tG~gI~e~f~~L~~~i~~ 171 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
T ss_conf 72799796989999999999999
No 188
>KOG1490 consensus
Probab=99.70 E-value=1.2e-17 Score=137.81 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=114.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCC-CCCCCHHHHHHCCCCCE
Q ss_conf 30388640356425678876520121100024566542023114203406999817110444-44300011100012100
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP-SRITESLEQKTVKKSMQ 281 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk-~~~~~~~E~~s~~~t~~ 281 (470)
.-.+.+.|.||||||||+|.++..+ .-|.+.|.||+--.-..+.|+-..|..+|||||-.+ .-..+.+|..|+ -++.
T Consensus 168 trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI-TALA 245 (620)
T KOG1490 168 TRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII-TALA 245 (620)
T ss_pred CCEEEEECCCCCCCHHHCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH-HHHH
T ss_conf 6717985278877376435520155-5557766551012100203240234403884124760543217999999-9998
Q ss_pred EEECCEEEEEECCCCC--C--CHHHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321--2--20212232000000--3576655894422335415556665420133320048831112
Q gi|255764471|r 282 SVRTCETTIVLLDATI--P--FEKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 282 ~i~~advvi~viDa~~--~--~~~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
+++.| |++++|.++ | +..| .+|...+.. .+||+|+|+||+|+..-+.- .+-...+.+.+..-..++++-
T Consensus 246 HLraa--VLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL--~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490 246 HLRSA--VLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDL--DQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHHH--HEEEEECHHHHCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--CHHHHHHHHHHHHCCCCEEEE
T ss_conf 75656--411343221208889999-9999876788628846999520025686566--878899999988604833887
Q ss_pred CCCCCCCCHHHHHHHHHHH--HHHHHCCCCHHHHH-HHHHHHHHHCCCCCC
Q ss_conf 3453334858999999999--99841468978989-999999982887877
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI--NKLWKTRITTSYLN-SWLQKTQLQNPPPTI 403 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~--~~~~~~ri~T~~LN-~~l~~~~~~~~pp~~ 403 (470)
.|+.+-.|+-.+...+++. ...-..++.....| ..+.......|.|..
T Consensus 321 tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~rd 371 (620)
T KOG1490 321 TSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAARD 371 (620)
T ss_pred ECCCCHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 325540020007778999999999999864324435564102304787656
No 189
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=3.6e-17 Score=134.64 Aligned_cols=152 Identities=17% Similarity=0.258 Sum_probs=111.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE-E-ECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501-0-2589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMA-V-VGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~a-i-v~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.|+-.|.--=|||||+-+|||..-- + -...-|.|-|.=+..+... |..+-+||-||-+ .|-+.|.. .+
T Consensus 2 IigTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHE-----rFIknMlA----G~ 72 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----KFLSNMLA----GV 72 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHH-----HHHHHHHH----HH
T ss_conf 8996365477899999998688865697789718727713075557999789998799838-----99999974----46
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCHHHHCCCHHHH------HHHHH-HHHCC--CCCEEEHHHCCC
Q ss_conf 87798999975988776234455533210233-2222056522301210------01245-53122--220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNI-PIIIVSNKMDTRIAQR------NFYEI-YSLDF--KEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~-~~ilv~NK~D~~~~~~------~~~e~-~~lg~--~~~i~iSA~~g~ 150 (470)
.-.|++++||+|.+|+.|+..|-+..|+-.+. ..++|+||||....+. .+.++ ...++ .++++|||.+|.
T Consensus 73 ~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~pi~~vSa~tg~ 152 (615)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEAKLFVTAATEGR 152 (615)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 43788999998899877237999999998199828999977656897999999999999984478767975201456667
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 20147999999861
Q gi|255764471|r 151 GTSELHSVIFKIFK 164 (470)
Q Consensus 151 Gi~~L~~~i~~~~~ 164 (470)
|+++|.+.+.....
T Consensus 153 Gi~~L~~~L~~l~~ 166 (615)
T PRK10512 153 GIDALREHLLQLPE 166 (615)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 99999999986255
No 190
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1.7e-16 Score=130.17 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE---EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850---10258985302238999998998999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM---AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~---aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.|.++|.+|||||||+|+|..... ....+....|-......+++++..+.+.||||-. +.+.......
T Consensus 1 ~ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe---------~~~~l~~~y~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE---------SLRSLWDKYY 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCH---------HHHHHHHHHC
T ss_conf 9999999998888999988750367677765540353132689999899999999689878---------8878998742
Q ss_pred HHCCEEEEEECCCCCCCH--HHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHH-----HCCC--CCEEEHH
Q ss_conf 877989999759887762--3445553321---0233222205652230121--00124553-----1222--2010011
Q gi|255764471|r 81 NEAHLILFLIDSKAGITP--YDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYS-----LDFK--EIVEISA 146 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~--~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~-----lg~~--~~i~iSA 146 (470)
+.||.++||+|+.+.-.- .-..+.+.++ ..+.|+++++||+|..... +...+... .+-. .++++||
T Consensus 72 ~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SA 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 89878999986686788999999999975110248962999970667665778999999999999985469989999887
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 102220147999999
Q gi|255764471|r 147 EHDLGTSELHSVIFK 161 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~ 161 (470)
++|.|+++.++++.+
T Consensus 152 ktG~Gv~e~f~wL~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 829498999999965
No 191
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=9.6e-17 Score=131.77 Aligned_cols=157 Identities=24% Similarity=0.237 Sum_probs=106.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC--------------------CCCCHHHH----H-------------HHHHCCCCEEE
Q ss_conf 38864035642567887652012--------------------11000245----6-------------65420231142
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYN--------------------RLLTGSQS----G-------------ITRDSVSISWN 247 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~--------------------r~ivs~~~----G-------------tTrD~i~~~~~ 247 (470)
||+++|...+|||||+-.|+... +-++|++. | .|.+.-...++
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred ECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE--ECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 034069998171104444430001110001210012--012059984553212202122320000003576655894422
Q gi|255764471|r 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV--RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 (470)
Q Consensus 248 ~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i--~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~D 325 (470)
..++.+.|+|+|| +|+|.-. ++..+ ...|.+++|++|.+|+.+|.+..+..+...+.|+++|+||+|
T Consensus 81 ~~~k~it~iD~pG----------H~~y~kt-~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiD 149 (224)
T cd04165 81 KSSKLVTFIDLAG----------HERYLKT-TLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred CCCCEEEEEECCC----------HHHHHHH-HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 6786799997887----------3999999-9987635568989999317889779999999999983999899998977
Q ss_pred CCCCHH--HHHHHHHHHC---------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 335415--5566654201---------------------3332004883111234533348589999999
Q gi|255764471|r 326 MVSDKL--NLLQDLRTKA---------------------IKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 (470)
Q Consensus 326 li~~~~--~~~~~~~~~~---------------------~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~ 372 (470)
++++.. ...+++...+ ...+++...+||+.+||.+|.|++.|...+.
T Consensus 150 l~~~~~l~~~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL~ 219 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 6898999999999999970447556870216858899998648867774679976589879999999998
No 192
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=5e-17 Score=133.67 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=92.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
+|+++|-++||||||+|+++..+- ..+..-|..|.....+.+++.. +.++||||. |.+... ....
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~-~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ----------EEFSAM-RDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHH-HHHH
T ss_conf 999999699679999999961959--987788300489999997669999999979996----------235578-8999
Q ss_pred EECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2012059984553212202122-3200000----0357665589442233541555666542013332004883111234
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
++.||++++|+|.++.-+-+.. .....+. ....|+++|.||.||..++.-..++..... +. ..++.+.+|
T Consensus 68 ~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a-~~----~~~~y~e~S 142 (160)
T cd00876 68 IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-KE----WGCPFIETS 142 (160)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHH-HH----CCCEEEEEC
T ss_conf 7643689997328987899999999999999728788629999974562230789999999999-98----499799984
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 5333485899999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLE 373 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~ 373 (470)
|++|.||+++|..+.+
T Consensus 143 ak~g~nV~e~F~~i~~ 158 (160)
T cd00876 143 AKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 7989498999999997
No 193
>PRK09601 translation-associated GTPase; Reviewed
Probab=99.70 E-value=1.3e-16 Score=130.87 Aligned_cols=90 Identities=31% Similarity=0.388 Sum_probs=74.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-----------------EEEEEECCCCCCC
Q ss_conf 95089997189887888999985885010258985302238999998998-----------------9999965884207
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-----------------IFNIVDTAGIADG 63 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~-----------------~~~liDT~G~~~~ 63 (470)
|.-+|+|||.||||||||||+||+... -++++|.+|-|...|.+...+. ++.++|.||+..+
T Consensus 1 m~mkiGivGlPnvGKSTlFnalT~~~~-~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~g 79 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKG 79 (364)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
T ss_conf 982488877999988999999967998-6458998887880068857854589998762876501125899965776787
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 636899999999999998779899997598
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSK 93 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~ 93 (470)
.+.+ +.+-.+.+..+.+||.+++||++-
T Consensus 80 As~G--~GLGN~FL~~iR~~DaiihVVr~F 107 (364)
T PRK09601 80 ASKG--EGLGNKFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCCC--CCCHHHHHHHHHHCCEEEEEEECC
T ss_conf 5346--774289999887347567750002
No 194
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=3.1e-17 Score=135.07 Aligned_cols=153 Identities=23% Similarity=0.318 Sum_probs=106.2
Q ss_pred EEECCCCCCHHHHHHHHHCCCEE--------E------ECCCCCCEEEEEEEEEEEC-----CEEEEEEECCCCCCCCHH
Q ss_conf 99718988788899998588501--------0------2589853022389999989-----989999965884207636
Q gi|255764471|r 6 AIVGAPNVGKSTLFNRLVKKKMA--------V------VGNHPGITRDRLYGQAIIN-----GVIFNIVDTAGIADGKNC 66 (470)
Q Consensus 6 aivG~pNvGKStL~N~l~~~~~a--------i------v~~~~g~Trd~~~~~~~~~-----~~~~~liDT~G~~~~~~~ 66 (470)
+|+-.---|||||-.||+..-.+ - +...-|.|-..+.....|. .+.+.||||||..+
T Consensus 13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD---- 88 (603)
T COG0481 13 SIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD---- 88 (603)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCC----
T ss_conf 7999842782048899999846767678888752213467662845873278999994799779999727998443----
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH-----HHHHHHHCCCCC
Q ss_conf 899999999999998779899997598877623445553321023322220565223012100-----124553122220
Q gi|255764471|r 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN-----FYEIYSLDFKEI 141 (470)
Q Consensus 67 ~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~-----~~e~~~lg~~~~ 141 (470)
|..++. +++.-|.-+|+||||..|+..+...=.-..-..+..++-|+||+|++..+.. +.+...+.-.+.
T Consensus 89 -FsYEVS----RSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~da 163 (603)
T COG0481 89 -FSYEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDA 163 (603)
T ss_pred -EEEEEH----HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf -677761----337637771899987655378899999999876967997532256887897899999998709895200
Q ss_pred EEEHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 10011102220147999999861012
Q gi|255764471|r 142 VEISAEHDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 142 i~iSA~~g~Gi~~L~~~i~~~~~~~~ 167 (470)
+.+||++|.|+++++++|+..+|...
T Consensus 164 v~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 164 VLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 46763468997999999996289898
No 195
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=1.2e-16 Score=131.17 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=99.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+.++|.++|-+|||||||++++...+-.-+ .| |...-...+++++..+.++|||| .|+|-. -..
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~~~~--~p--Tvg~~~~~~~~~~~~l~iwD~~G----------qe~~r~-l~~ 75 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTT--IP--TIGFNVETVTYKNISFTVWDVGG----------QDKIRP-LWR 75 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCC--CC--CCCCEEEEEEECCEEEEEEECCC----------CCCCCH-HHH
T ss_conf 8889999998899998999999965997775--79--78810799998989999998999----------854553-677
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--2122320000---003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.-.+.||.+++|+|+++.-+ +-...+...+ .-.+.|++|+.||.|+.+... ..++.+++....-.-....+.+
T Consensus 76 ~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~ 153 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--AAEITEKLGLHSIRDRNWYIQP 153 (175)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHCCCCEEEEE
T ss_conf 75577618999986687789999999999996315316986999984566767889--9999999686654079759998
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
+||++|.||++.++-+.+-.
T Consensus 154 ~SA~tG~GI~e~f~wL~~~i 173 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 26878969899999999984
No 196
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.69 E-value=1.2e-16 Score=131.10 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=97.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 03886403564256788765201211000245665420231142034069--9981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|-++||||||+++++..+- ..+..-|..|.....+.++|..+ .++|||| .|.|...+. .
T Consensus 1 fKiv~vGd~~vGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDt~G----------~e~~~~~~~-~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAG----------QEEFSAMRD-Q 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHHH-H
T ss_conf 9899999999789999999972979--98778813678999999999999999998999----------710356777-7
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-3200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|+|.++.-+-+.. .+.+.+. ..+.|+++|.||+||..++.-..++..+ +.+. .+++.+.+
T Consensus 68 ~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V~~~e~~~-~a~~----~~~~~~E~ 142 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE-LARQ----WGCPFLET 142 (164)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCCCHHHHHH-HHHH----CCCEEEEE
T ss_conf 537987799983079889999999999999986188888668777534630117899999999-9998----39989998
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 453334858999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~ 374 (470)
||++|.||+++|+.+.+-
T Consensus 143 SAk~g~nV~~~F~~l~~~ 160 (164)
T smart00173 143 SAKERVNVDEAFYDLVRE 160 (164)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 589881789999999999
No 197
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=5.7e-17 Score=133.28 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=91.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 3886403564256788765201211000245665420231142034-069998171104444430001110001210012
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
||.++|-+|||||||++++...+-.-+.++.|... ..+.+++ ..+.++||||- |.|... ...-.
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~~~~~pTig~~~----~~~~~~~~~~l~iwD~~G~----------e~~~~~-~~~y~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQ----------EKMRTV-WKCYL 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEE----EEEEECCEEEEEEEECCCC----------CCCCHH-HHHHH
T ss_conf 99999999999999999995698777577615038----9999899899999978986----------247415-88774
Q ss_pred ECCEEEEEECCCCCCCH--HHHHHHHHH---HHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCC
Q ss_conf 01205998455321220--212232000---000357665589442233541555666542013-332004883111234
Q gi|255764471|r 284 RTCETTIVLLDATIPFE--KQDLRIVDS---VFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTIS 357 (470)
Q Consensus 284 ~~advvi~viDa~~~~~--~qd~~i~~~---i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~~iS 357 (470)
+.||.+++|+|+++.-+ .-...+... ..-.+.|++++.||.|+..... .+++...+. +.+..-...++.++|
T Consensus 66 ~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~~~~~~~~~~~~i~~~S 143 (160)
T cd04156 66 ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCS 143 (160)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 56778999985686788787999999998663537874999998633656679--9999999869999853999999866
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 533348589999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVL 372 (470)
Q Consensus 358 A~~g~gi~~l~~~i~ 372 (470)
|+||.||+++|+.+.
T Consensus 144 AktGegi~e~f~~la 158 (160)
T cd04156 144 AVTGEGLAEAFRKLA 158 (160)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 884959999999985
No 198
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.69 E-value=4.2e-17 Score=134.17 Aligned_cols=54 Identities=33% Similarity=0.562 Sum_probs=41.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 899971898878889999858850102589853022389999989989999965884
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~ 60 (470)
.|++||+||||||||+|+|.|++.|+|++.|||||+..+ +.+ +..+.|+||||+
T Consensus 104 ~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~--i~~-~~~i~liDTPGi 157 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPGV 157 (157)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE--EEE-CCCEEEEECCCC
T ss_conf 999982588533688988726735886598833777799--996-899999969099
No 199
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.68 E-value=4.8e-16 Score=127.07 Aligned_cols=147 Identities=24% Similarity=0.329 Sum_probs=100.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.|+||||||+||+++.+- .....|.++.|.....+.+++.. +.+.||||... +. .+ ....+.
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~-----~~-~~---~~~~~~ 70 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQNKF-PEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER-----FR-AL---RPLYYR 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH-----HH-HH---HHHHHC
T ss_conf 989999799779999999961999-987477413556789999999999999997898720-----46-78---899862
Q ss_pred HCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHH----HHHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 77989999759887762344555332---10---2332222056522301210----01245-53122220100111022
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQR----NFYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~----~~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
.||++++|+|..+.-+ . ..+-+|+ ++ .+.|+++|.||+|+..... .+.++ .++|+ +.+.+||++|.
T Consensus 71 ~ad~~iivfd~~~~~S-~-~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~-~y~e~Sak~g~ 147 (162)
T pfam00071 71 GAQGFLLVYDITSRDS-F-ENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGL-PFMETSAKTNE 147 (162)
T ss_pred CCCCCEEECCCCCHHH-H-HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCC
T ss_conf 5765504234898899-9-9999999999985798862889975247465188999999999998099-79997378882
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++.+.|.+.+
T Consensus 148 gI~~~F~~i~~~i 160 (162)
T pfam00071 148 NVEEAFEELAREI 160 (162)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999996
No 200
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=1.2e-16 Score=131.01 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=100.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420340--699981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|.++||||||++++++.+= ....| +|-+.+...+++++. .+.++||||- |.|... ...
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~F--~~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~----------e~~~~~-~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF--PENVP-RVLPEITIPADVTPERVPTTIVDTSSR----------PQDRAN-LAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCC----------CCCCHH-HHH
T ss_conf 9899999999899999999984978--88777-634568999998890999999989987----------230245-798
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHH--CCCCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122--3200000--03576655894422335415556-6654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVF--NTGHAVVLALNKWDMVSDKLNLL-QDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|.|.++.-+-+.. +.+..+. ..+.|+++|.||+||.+++.... ++....+...+..+ ...+.+
T Consensus 67 ~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~--~~~~Et 144 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREI--ETCVEC 144 (166)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEE
T ss_conf 736898899997089877899999999999998689996899998865400250335889999999973074--889990
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+..
T Consensus 145 SAktg~nV~e~F~~~~k~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6588919899999999998
No 201
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.68 E-value=2.1e-16 Score=129.52 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=97.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
+|+++|-++||||||++++++.+- ..+..-|.-|.....+.+++.. +.++||||- |.|...+ ...
T Consensus 3 KIvlvGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~----------e~~~~~~-~~~ 69 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ----------DEYSILP-QKY 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEECCEEEEEEEEECCCC----------CCCCHHH-HHH
T ss_conf 899999899889999999970978--998588124411379999999999999989987----------0100667-999
Q ss_pred EECCEEEEEECCCCCCCHHHHH--H---HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2012059984553212202122--3---2000000357665589442233541555666542013332004883111234
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDL--R---IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~--~---i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
.+.||.+++|.|.++.-+-+.. + +.+.....+.|+++|.||+||.+.+.-..++.. .+.+. .+++.+.+|
T Consensus 70 ~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~-~~a~~----~~~~f~EtS 144 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-ELAES----WGAAFLESS 144 (180)
T ss_pred HHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHH-HHHHH----CCCEEEEEC
T ss_conf 8635578999743887889999999999999758888867977653462440788999999-99998----399899977
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 53334858999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~ 374 (470)
|++|.||+++|+.+.+.
T Consensus 145 Ak~g~nV~e~F~~l~~~ 161 (180)
T cd04137 145 ARENENVEEAFELLIEE 161 (180)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 68891989999999999
No 202
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=1.9e-16 Score=129.74 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=101.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
..+++.++|.++||||||++++++..-...+-.|-+..+.....++.+|.+ ..++|||| .|.+....
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g----------~e~~~~l~- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGE----------DEVAILLN- 71 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-
T ss_conf 0899999999998899999999649998666567546618999999899999999985565----------32355665-
Q ss_pred CEEEECCEEEEEECCCCCCCHHHH--HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220212--232000000357665589442233541555666542013332004883111234
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQD--LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd--~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
...++.||++++|.|.++.-+-+- ...-........|+++|.||.||.+.+.-...+..+.. +. ....+.+.+|
T Consensus 72 ~~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a-~~---~~~~~~~e~S 147 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC-RK---LGLPPPLHFS 147 (169)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH-HH---CCCCCCEEEE
T ss_conf 8875469889999979987899999999997005689818999886554203754677699999-98---3999666998
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 5333485899999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~ 376 (470)
|++|.|++++|..+.+++.
T Consensus 148 Aktg~nv~~~F~~la~~a~ 166 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EECCCCHHHHHHHHHHHHH
T ss_conf 3279898999999999976
No 203
>PRK00007 elongation factor G; Reviewed
Probab=99.68 E-value=8.4e-17 Score=132.18 Aligned_cols=113 Identities=24% Similarity=0.287 Sum_probs=84.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE-----EE------CCC------CCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCH
Q ss_conf 8999718988788899998588501-----02------589------853022389999989-98999996588420763
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMA-----VV------GNH------PGITRDRLYGQAIIN-GVIFNIVDTAGIADGKN 65 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~a-----iv------~~~------~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~ 65 (470)
-|+|+|.-..||+||.-+|+-..-+ -| .|+ -|.|-......+.|. ++.++|+||||..+
T Consensus 12 Ni~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPGHvD--- 88 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPGHVD--- 88 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCCCCC---
T ss_conf 99999169999899999999966984658424389855678288997698873222548826973899991979752---
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCH
Q ss_conf 689999999999999877989999759887762344555332102332222056522301
Q gi|255764471|r 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 (470)
Q Consensus 66 ~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~ 125 (470)
|..++ ..|+.-+|.+++||||.+|+.++.+.+++++.+.+.|.++++||+|...
T Consensus 89 --F~~Ev----~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ 142 (693)
T PRK00007 89 --FTIEV----ERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTG 142 (693)
T ss_pred --HHHHH----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf --48999----9999985868999988988777799999999875989699997977899
No 204
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.68 E-value=5.9e-17 Score=133.21 Aligned_cols=55 Identities=38% Similarity=0.585 Sum_probs=46.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 0899971898878889999858850102589853022389999989989999965884
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~ 60 (470)
.+|+|||+||||||||+|+|+|+++++|++.||||||.+.-.+ +..+.|+||||+
T Consensus 101 ~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~i~~---~~~~~liDTpGi 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEE---CCCEEEEECCCC
T ss_conf 0899987777447789999847850626699983835599996---899899979299
No 205
>PRK12740 elongation factor G; Reviewed
Probab=99.68 E-value=6.4e-17 Score=132.98 Aligned_cols=108 Identities=23% Similarity=0.330 Sum_probs=83.3
Q ss_pred ECCCCCCHHHHHHHHHCCCEEE-----EC------C------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHH
Q ss_conf 7189887888999985885010-----25------8------98530223899999899899999658842076368999
Q gi|255764471|r 8 VGAPNVGKSTLFNRLVKKKMAV-----VG------N------HPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAK 70 (470)
Q Consensus 8 vG~pNvGKStL~N~l~~~~~ai-----v~------~------~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 70 (470)
+|.--.||+||.-+|+-..-+| |. | .-|.|-..-...+.|+++.++||||||..+ |..
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHvD-----F~~ 75 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHVD-----FTG 75 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCC-----HHH
T ss_conf 989988888999999996599875761438971467809999739973221388988998999992979751-----489
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCC
Q ss_conf 999999999987798999975988776234455533210233222205652230
Q gi|255764471|r 71 QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 (470)
Q Consensus 71 ~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~ 124 (470)
++ ..|+.-+|.+++||||.+|+.++.+.+++++.+.+.|.++++||+|..
T Consensus 76 EV----~~aLrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~ 125 (670)
T PRK12740 76 EV----ERALRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRA 125 (670)
T ss_pred HH----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99----999998686899997899973789999999998799969999797899
No 206
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=1.9e-15 Score=123.10 Aligned_cols=114 Identities=23% Similarity=0.397 Sum_probs=86.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCC---------------CCCCCHHH------HHHHHHCCCCEEEECCEEEEEEECHH
Q ss_conf 4303886403564256788765201---------------21100024------56654202311420340699981711
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGY---------------NRLLTGSQ------SGITRDSVSISWNWKNHPIEIFDTAG 260 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~---------------~r~ivs~~------~GtTrD~i~~~~~~~~~~~~liDTaG 260 (470)
+.-++||+|+|.+||+||.-+|+-. .+..+||. -|.|.-+--..++|+|+.|.|+||||
T Consensus 9 ~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCC
T ss_conf 11779999378989899999999746752448466314678864678858899759648615177867898999990989
Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 044444300011100012100120120599845532122021223200000035766558944223
Q gi|255764471|r 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 (470)
Q Consensus 261 irkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dl 326 (470)
+.+...| +.++++-+|.+++|+||..|+..|.+++.+.+.+.+.|.++.+||||.
T Consensus 89 -----h~DF~~e------~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR 143 (526)
T PRK00741 89 -----HEDFSED------TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred -----CHHHHHH------HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf -----4677899------999998737599999777552333689999988639988999965676
No 207
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=1.6e-16 Score=130.21 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=91.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420340--699981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||++++++.+= ..+..-|..|.....+..++. .+.++|||| .|.|...+ ..
T Consensus 1 fKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~~~~~~~~v~l~iwDtaG----------~e~~~~l~-~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAG----------QEDYAAIR-DN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-HH
T ss_conf 9799999999889999999971989--87748854416899999999999999998988----------66248899-99
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122--32---00000035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|+|.++.-+-+.. ++ .+.......|+++|.||+||.+++.-..++.++. ..-.+++.+.+
T Consensus 68 ~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~-----a~~~~~~~~E~ 142 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL-----ARQWGVPYVET 142 (164)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHH-----HHHCCCEEEEE
T ss_conf 8863768899997797788999999999999860878863698733032334177899999999-----99839989998
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 453334858999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~ 374 (470)
||++|.||+++|..+.+-
T Consensus 143 SAk~g~nV~~~F~~l~~~ 160 (164)
T cd04139 143 SAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 268790889999999999
No 208
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=5.1e-16 Score=126.88 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99971898878889999858850-10258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
|+++|.+|||||||+|++++..- .-+.++-|.+ ...+...+..+.+.||||-.. .+......+..|
T Consensus 2 I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~----~~~i~~~~~~l~iwDt~G~e~---------~~~l~~~y~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFN----MRKVTKGNVTLKVWDLGGQPR---------FRSMWERYCRGV 68 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCHHH---------HHHHHHHHHCCC
T ss_conf 8999999986999999997599988616732505----899998999999997983587---------799999874686
Q ss_pred CEEEEEECCCCCCCHH--HHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHH-----CCCCCEEEHHHCCCC
Q ss_conf 9899997598877623--445553321---0233222205652230121--001245531-----222201001110222
Q gi|255764471|r 84 HLILFLIDSKAGITPY--DHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSL-----DFKEIVEISAEHDLG 151 (470)
Q Consensus 84 D~il~vvD~~~g~~~~--D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~l-----g~~~~i~iSA~~g~G 151 (470)
|+++||+|+.+.-+-. ...+.+.+. ..+.|+++|.||+|..... ....+...+ .--.++.+||++|.|
T Consensus 69 ~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~g 148 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTN 148 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 36875157787889999999999998544348982898883567643478999999999998734998799997968969
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
++++.+++.+
T Consensus 149 I~e~f~wL~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHC
T ss_conf 8999999965
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=9.9e-16 Score=124.93 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=101.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC------------------------EEEECCC------CCCEEEEEEEEEEECCEEEEE
Q ss_conf 9997189887888999985885------------------------0102589------853022389999989989999
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKK------------------------MAVVGNH------PGITRDRLYGQAIINGVIFNI 54 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~------------------------~aiv~~~------~g~Trd~~~~~~~~~~~~~~l 54 (470)
|+++|....|||||.-+|+-.- -|.+-|. -|.|-|.-...+++.++.+.|
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~i 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf 89996689989999999999859976889999999998549987505566138987985892588589999849936999
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC-------CCHHHHHHHHHHHCCCCC-CCCCHHHHCCCH-
Q ss_conf 96588420763689999999999999877989999759887-------762344555332102332-222056522301-
Q gi|255764471|r 55 VDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG-------ITPYDHAITSFLRKKNIP-IIIVSNKMDTRI- 125 (470)
Q Consensus 55 iDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g-------~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~- 125 (470)
+||||.. .+...|. .++..||++++||||..| ..++.++-+..++-.+.+ +++++||+|...
T Consensus 82 iDtPGH~-----df~~~mi----~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~ 152 (219)
T cd01883 82 LDAPGHR-----DFVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EECCCCH-----HHHHHHH----HHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 8789726-----6788999----877531668999985767510366777659999999998499748999987536886
Q ss_pred -HHHH-----HHH----HHHHCCC----CCEEEHHHCCCCCHH
Q ss_conf -2100-----124----5531222----201001110222014
Q gi|255764471|r 126 -AQRN-----FYE----IYSLDFK----EIVEISAEHDLGTSE 154 (470)
Q Consensus 126 -~~~~-----~~e----~~~lg~~----~~i~iSA~~g~Gi~~ 154 (470)
..+. ..+ +.++|+. ..+||||..|.|+-+
T Consensus 153 ~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~ 195 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 5259999999999999999829995661599933676630466
No 210
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=1.5e-15 Score=123.69 Aligned_cols=114 Identities=21% Similarity=0.425 Sum_probs=86.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCC--CHH-----HHHHH-HH----------CC---CCEEEECCEEEEEEECHHCC
Q ss_conf 038864035642567887652012110--002-----45665-42----------02---31142034069998171104
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLL--TGS-----QSGIT-RD----------SV---SISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~i--vs~-----~~GtT-rD----------~i---~~~~~~~~~~~~liDTaGir 262 (470)
-+|||+|+..+||+||.-+|+-.--+| .+. .-|+| -| +| -..++|++++|.|+||||-
T Consensus 3 Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~- 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH- 81 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCC-
T ss_conf 1799984799998999999998668633385463036888604688799986594486363788789989999979697-
Q ss_pred CCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 444430001110001210012012059984553212202122320000003576655894422335
Q gi|255764471|r 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 (470)
Q Consensus 263 kk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~ 328 (470)
.++. ..+.++++-+|.+++|+||..|+..|..++.+++.+.++|.++++||+|...
T Consensus 82 --------~DF~--~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~ 137 (267)
T cd04169 82 --------EDFS--EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred --------HHHH--HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf --------7899--9999999886454799525666535589999999972999799985345678
No 211
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=4.1e-16 Score=127.54 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=102.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 44303886403564256788765201211000245665-42023114203406--9998171104444430001110001
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
+.-++|.++|-.+||||||+.+++...- .++...|+ .|.-...+..+|.. +.+||||| .|.|...
T Consensus 4 dy~~KivllGd~~VGKTsl~~r~~~~~f--~~~y~~Tig~~~~~k~~~~~~~~v~l~iwDtaG----------qe~f~~l 71 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSG----------QGRFCTI 71 (189)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEECCCC----------CCCHHHH
T ss_conf 5899999999899789999999974997--898687653798999999999999999981788----------6221167
Q ss_pred CCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 210012012059984553212--202122320000003--5766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
....++.||.+++|.|.++. +..-+.++ +.+.+. +.|+++|.||+||...+.-..++. +.+..-.+++.
T Consensus 72 -~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~-~~i~~~~~~~p~iLVGNK~DL~~~r~V~~ee~-----~~~A~~~~~~f 144 (189)
T cd04121 72 -FRSYSRGAQGIILVYDITNRWSFDGIDRWI-KEIDEHAPGVPKILVGNRLHLAFKRQVATEQA-----QAYAERNGMTF 144 (189)
T ss_pred -HHHHHHHCCCEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCHHHCCCCCHHHH-----HHHHHHCCCEE
T ss_conf -898866337048982279889999999999-99999768987899613255033088999999-----99999889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12345333485899999999999841
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~~~~~~ 379 (470)
+.+||++|.||+++|..+.+.....+
T Consensus 145 ~EtSAk~g~nV~e~F~~l~~~il~~~ 170 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99600679398999999999999865
No 212
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=1.5e-15 Score=123.64 Aligned_cols=126 Identities=24% Similarity=0.381 Sum_probs=90.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC--CHHH-HHHH--------------HHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 38864035642567887652012110--0024-5665--------------42023114203406999817110444443
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL--TGSQ-SGIT--------------RDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~-~GtT--------------rD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
+|||+|+..+||+||.-+|+-.--++ .+.+ -|+| .-+--..++|+++++.|+||||- .
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~-----~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGH-----V 75 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCC-----H
T ss_conf 98999689999889999999866873558155389755668488987687073366899989989999869696-----7
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHC
Q ss_conf 000111000121001201205998455321220212232000000357665589442233541-55566654201
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKA 341 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~ 341 (470)
+..-| +.++++-+|.+++|+||..|+..|..++.+.+.+.+.|.++++||+|.-..+ ...+.++++.+
T Consensus 76 DF~~e------~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~l 144 (270)
T cd01886 76 DFTIE------VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHH------HHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 88999------9999877555999984676442636999988998499989999887877887166899999985
No 213
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.67 E-value=3.7e-16 Score=127.85 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=98.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|-++||||||+++++..+ - ..+..-|.-|.....+.++|.. +.+||||| .|.|...+ ..
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~~-f-~~~y~pTi~~~~~k~i~i~~~~~~l~iwDtaG----------~e~~~~~~-~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV-F-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAG----------TEQFTAMR-EL 68 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCCEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 199998999977999999996193-8-98658833315999999999999999982788----------62333451-54
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHH----HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-320000----0035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSV----FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i----~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||.+++|.|.++.-+-+.. .+...+ ...+.|+++|.||+||.+++.-..++..+ +.+. +..++.+.+
T Consensus 69 ~~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~~e~~~-~a~~---~~~~~~~E~ 144 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQ---WGNVPFYET 144 (168)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCHHHHHH-HHHH---CCCCEEEEE
T ss_conf 512686679853689888999999999999985178887489887314612137689999999-9997---499779996
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|..+.+
T Consensus 145 SAk~~~nV~e~F~~l~~ 161 (168)
T cd04177 145 SARKRTNVDEVFIDLVR 161 (168)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 24878468999999999
No 214
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.67 E-value=3.1e-16 Score=128.37 Aligned_cols=157 Identities=21% Similarity=0.301 Sum_probs=96.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|.++|-++||||||++++++.. -.-.-.|-.-.|.....+.++|.. +.+||||| .|.|.... ..
T Consensus 1 lKIvllGd~gVGKTsLi~rf~~~~-F~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaG----------qe~f~sl~-~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAG----------QERFNSIT-SA 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 989999979972999999995499-9998799764688999999999999999997988----------61245235-78
Q ss_pred EEECCEEEEEECCCCCC--CHHHHHHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212--202122320000---0035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIP--FEKQDLRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~--~~~qd~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.|+.+++|.|.+.. +.....++ +.+ ...+.|+++|.||+||..++.-..++..+.. +. +.+.+.+.+
T Consensus 69 yyr~a~~~ilVyDit~~~SF~~l~~W~-~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A-~~---~~~~~f~Et 143 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA-QQ---ITGMRFCEA 143 (202)
T ss_pred HHHHHCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHHH-HH---CCCCEEEEC
T ss_conf 876414458998568889999999999-9999746688718987653650531787999999999-82---799889992
Q ss_pred CCCCCCCHHHHHHHHHH-HHHH
Q ss_conf 45333485899999999-9998
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE-INKL 377 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~-~~~~ 377 (470)
||++|.||+++|..+.+ ++++
T Consensus 144 SAkt~~nV~e~F~~l~~~i~~~ 165 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5899969899999999999985
No 215
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=4.2e-16 Score=127.48 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=99.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-+|||||||+++|...+..-+.++.|.. ...+.+++..+.+-||||-... .. ......+.
T Consensus 16 ~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~----~~~i~~~~~~~~iwD~~G~e~~-----~~----~~~~y~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESL-----RS----SWNTYYTN 82 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCCCC-----CC----HHHHHHCC
T ss_conf 99999989999889999999739927716723604----6999978889999989998656-----62----26777057
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C----CCCEEEHHHCCC
Q ss_conf 798999975988776--234455533210---233222205652230121--0012455312-2----220100111022
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F----KEIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~----~~~i~iSA~~g~ 150 (470)
||.++||+|+.+.-. ..-..+.+.++. .+.|+++++||+|..... ..+.+...+. + -.++.+||++|.
T Consensus 83 a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 75379999767888999999999999726101698289999555565578999999997477763598099996685891
Q ss_pred CCHHHHHHHHH
Q ss_conf 20147999999
Q gi|255764471|r 151 GTSELHSVIFK 161 (470)
Q Consensus 151 Gi~~L~~~i~~ 161 (470)
|+++.++++..
T Consensus 163 Gv~e~f~wLa~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHHC
T ss_conf 98999999866
No 216
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=7.7e-16 Score=125.68 Aligned_cols=142 Identities=25% Similarity=0.332 Sum_probs=105.0
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCC----------E-----------EEECC------CCCCEEEEEEEEEEECCEEEE
Q ss_conf 89997189887888999985---885----------0-----------10258------985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV---KKK----------M-----------AVVGN------HPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~---~~~----------~-----------aiv~~------~~g~Trd~~~~~~~~~~~~~~ 53 (470)
.++++|....|||||.-+|+ |.- . |.+-| .-|.|-|.-+..+++.++.|.
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEE
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899981992699
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHCCCHHHHHHH-
Q ss_conf 996588420763689999999999999877989999759887762344555332102332-222056522301210012-
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDTRIAQRNFY- 131 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~~~~~~- 131 (470)
++||||- ..+-..|.. ++..||++++||||.+|+.++.++-+..++..+.+ +++++||+|.....+...
T Consensus 81 iiDtPGH-----~dfi~nmi~----gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~ 151 (208)
T cd04166 81 IADTPGH-----EQYTRNMVT----GASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEECCCC-----HHHHHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 9878962-----889999999----9863774799997588872789999999997499839999988576899989999
Q ss_pred ----H---H-HHHCCCC--CEEEHHHCCCCCHH
Q ss_conf ----4---5-5312222--01001110222014
Q gi|255764471|r 132 ----E---I-YSLDFKE--IVEISAEHDLGTSE 154 (470)
Q Consensus 132 ----e---~-~~lg~~~--~i~iSA~~g~Gi~~ 154 (470)
+ + .++|+.+ .+||||.+|.|+-+
T Consensus 152 ~i~~~~~~~l~~~~~~~~~~IPiSa~~GdNi~~ 184 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
T ss_conf 999999999997499887199812677888786
No 217
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.7e-16 Score=127.85 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=50.7
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 97189887888999985885010258985302238999998998999996588420763689999999999999877989
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLI 86 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~i 86 (470)
|+|++.+|||||+|+|.+...+-|++.+-+|+...+-...+++..+.|.||||++++.+.+ .+-+......+.++|++
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D--~~~r~~~~d~l~~~DLv 121 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD--AEHRQLYRDYLPKLDLV 121 (296)
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHH--HHHHHHHHHHHHHCCEE
T ss_conf 7437777688999999702673421046688701567741266524884378855320221--89999999886322479
Q ss_pred EEEECCCCCCCHHHHHHHHHHH--CCCCCCCCCHHHHC
Q ss_conf 9997598877623445553321--02332222056522
Q gi|255764471|r 87 LFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKMD 122 (470)
Q Consensus 87 l~vvD~~~g~~~~D~~i~~~lr--~~~~~~ilv~NK~D 122 (470)
|+++|+.+.-...|+++++.+. -.++++++++|.+|
T Consensus 122 L~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 122 LWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHH
T ss_conf 99614777001477999999998605760699973665
No 218
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.67 E-value=1.2e-16 Score=131.03 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=71.7
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 00120120599845532122021223200000035766558944223354155566654201333200488311123453
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~ 359 (470)
.++|+.||++++|+||+.|++..|..+.+++.+.+||+++|+||+||++... .+.+..+... .+.+++++||.
T Consensus 7 ~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~--~~~~~~~~~~-----~g~~~i~iSa~ 79 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEV--LEKWKSIKES-----EGIPVVYVSAK 79 (156)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHC-----CCCCEEEEECC
T ss_conf 9999879999999987889998698999999756993999977555589899--9999999828-----99973787012
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 33485899999999999
Q gi|255764471|r 360 TGEGLDDLMVSVLEINK 376 (470)
Q Consensus 360 ~g~gi~~l~~~i~~~~~ 376 (470)
++.|++.|.+.+.+...
T Consensus 80 ~~~g~~~L~~~i~~~~~ 96 (156)
T cd01859 80 ERLGTKILRRTIKELAK 96 (156)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 67579999999998602
No 219
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.67 E-value=1.8e-16 Score=129.88 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=98.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
..+|+++|-++||||||++++++.. - ..+..-|.-|.....+.++|.. +.++|||| .|.|...+ .
T Consensus 2 t~Kiv~lGd~~VGKTsli~r~~~~~-f-~~~y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG----------~e~~~~~~-~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY-F-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAG----------QEEFSAMR-E 68 (164)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHH-H
T ss_conf 3799999999978899999998098-9-87567841358999999999999999998988----------60312567-9
Q ss_pred EEEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212202122-3200000----03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||++++|.|.++.-+-++. .+...+. ....|+++|.||+||.+.+.-..++..+.. +. ..++.+.
T Consensus 69 ~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~Vs~~e~~~~a-~~----~~~~~~E 143 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-RK----LKIPYIE 143 (164)
T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCCCHHHHHHHH-HH----CCCEEEE
T ss_conf 873467874689856735439999999999998618877752653034573540889999999999-98----1998999
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
+||++|.||+++|+.+.+..
T Consensus 144 ~SAk~~~nV~e~F~~l~~~I 163 (164)
T cd04145 144 TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 85486827799999999975
No 220
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=1.9e-16 Score=129.71 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=95.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-420231142034069--998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|+++|.++||||||++++++..= ..+..-|. .|.....+..+|+++ .+||||| .|.|...+ .
T Consensus 1 iKivlvGd~~VGKTsLi~rf~~~~F--~~~y~~Tig~d~~~k~i~v~~~~v~l~iwDtaG----------qe~f~~~~-~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGG----------QREFINML-P 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-H
T ss_conf 9899999999898999999953999--999888733898999999999999999986776----------48789999-9
Q ss_pred EEEECCEEEEEECCCCCCCHHH--HHHHHHHHHCCC--CCCCEEEECCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0120120599845532122021--223200000035--7665589442233541555-6665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQ--DLRIVDSVFNTG--HAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~q--d~~i~~~i~~~~--k~~iiv~NK~Dli~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
...+.|+++++|+|.++.-+-+ ..+ ...+.+.+ .+.|+|.||.||..+.... .+...+ ....+..-.++|.+.
T Consensus 68 ~y~~~a~~~ilvfDit~~~Sf~~~~~w-~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~-~~~~~a~~~~~~f~e 145 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEW-YRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIF 145 (182)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHH-HHHHHHHHCCCEEEE
T ss_conf 986478789999978998999989999-999997689998899998663556556223102489-999999984998999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 345333485899999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~ 373 (470)
+||++|.||+++|+.+.+
T Consensus 146 tSAk~~~nV~e~F~~i~~ 163 (182)
T cd04128 146 CSTSHSINVQKIFKIVLA 163 (182)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 947999798999999999
No 221
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=3e-16 Score=128.48 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=94.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE-CCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 38864035642567887652012110002456654202311420-3406--99981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~-~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+|+++|.++||||||++++++.+=. .+..-|.-+.....+.. +|.. +.++|||| .|.|...+..
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG----------~e~~~~l~~~- 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAG----------QEEYDRLRPL- 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCHHH-
T ss_conf 8999994997699999999639899--97589664799999995499899999996999----------7110534344-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf 12012059984553212202122--32000000--35766558944223354155566654201333200-488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i 356 (470)
.++.||++++|+|.++.-+-+.. .....+.. .+.|+|+|.||.||.++.... .....+....+.. ....+.+.+
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~-~~v~~e~~~~~a~~~~~~~y~Et 147 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCC-CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 53003488895036876779999999999999868999979999872212212237-65789999999998599789995
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+..
T Consensus 148 SAk~g~nV~e~F~~l~~~i 166 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7688929899999999999
No 222
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=4.6e-16 Score=127.18 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=95.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+.++|.++|-.|||||||+++|...+-.-+.++.| .-...+++++.++.++||||- |.|... ..
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gq----------e~~r~l-~~ 71 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQ----------DKIRPL-WR 71 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCC----------CCCCCH-HH
T ss_conf 888899999999999899999996699876026267----007999989889999989999----------746606-57
Q ss_pred EEEECCEEEEEECCCCCCC--HHHHHHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0120120599845532122--0212232---0000003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPF--EKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~--~~qd~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.-.+.||.+++|+|+++.- .+--..+ +....-.+.|++|+.||.|+-+... .+++.+.+.-....-....+..
T Consensus 72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHHCCCCEEEE
T ss_conf 64378866899983776789999999999997145227986999997566777889--9999999787655179809998
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 34533348589999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVL 372 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~ 372 (470)
+||++|.|+++.++-+.
T Consensus 150 ~SA~tG~Gv~e~f~WL~ 166 (168)
T cd04149 150 SCATSGDGLYEGLTWLS 166 (168)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 06878969799999986
No 223
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.1e-16 Score=131.45 Aligned_cols=143 Identities=23% Similarity=0.338 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHH---CC----------CE-----------EEECC------CCCCEEEEEEEEEEECCEEEE
Q ss_conf 89997189887888999985---88----------50-----------10258------985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV---KK----------KM-----------AVVGN------HPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~---~~----------~~-----------aiv~~------~~g~Trd~~~~~~~~~~~~~~ 53 (470)
.++++|.++.|||||.-||+ |. +. |-|-| .-|.|-|.-...++.+-+.|+
T Consensus 9 nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~t 88 (428)
T COG5256 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFT 88 (428)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEEE
T ss_conf 89998378787034455657773797989999999999861977168999853886678666689977788643770589
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC-------CCHHHHHHHHHHHCCCC-CCCCCHHHHCCCH
Q ss_conf 996588420763689999999999999877989999759887-------76234455533210233-2222056522301
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG-------ITPYDHAITSFLRKKNI-PIIIVSNKMDTRI 125 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g-------~~~~D~~i~~~lr~~~~-~~ilv~NK~D~~~ 125 (470)
++|+||.. .+-+.|.. ....||+.++||||+.| +..++++.+-+.+..+. .+++++||+|...
T Consensus 89 IiDaPGHr-----dFvknmIt----GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 89 IIDAPGHR-----DFVKNMIT----GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred EEECCCHH-----HHHHHHHC----CHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 96078467-----78987631----3313367999998889831014365875167899998569756999997156666
Q ss_pred HHHHHHH--------H-HHHCCCC----CEEEHHHCCCCCHHH
Q ss_conf 2100124--------5-5312222----010011102220147
Q gi|255764471|r 126 AQRNFYE--------I-YSLDFKE----IVEISAEHDLGTSEL 155 (470)
Q Consensus 126 ~~~~~~e--------~-~~lg~~~----~i~iSA~~g~Gi~~L 155 (470)
.++...+ + -..|+.+ .+||||-.|.|+.+-
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 2799999999999999997199866770796224467763326
No 224
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=7.7e-16 Score=125.66 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=100.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-+|||||||+++|......-+.++.| .....+.+++..+.+-||||=.. .+.......+.
T Consensus 18 ~kililGl~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gqe~---------~r~lw~~yy~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG----FNVETVEYKNLKFTMWDVGGQDK---------LRPLWRHYYQN 84 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCCC---------CCHHHHHCCCC
T ss_conf 799999679988999999996299777378688----45699997888999998999845---------47478760567
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHHH--HHHHHHHHCCC-------CCEEEHHHC
Q ss_conf 798999975988776--234455533210---2332222056522301210--01245531222-------201001110
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQR--NFYEIYSLDFK-------EIVEISAEH 148 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~~-------~~i~iSA~~ 148 (470)
||.++||+|+.+.-. ..-.++.+.|+. .+.|+++++||+|.+.... .+.+ .+++. .++++||++
T Consensus 85 ~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~--~l~l~~~~~~~~~i~~~SA~t 162 (182)
T PTZ00133 85 TNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTE--KLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHH--HHCHHHHHCCCCEEEEEECCC
T ss_conf 644999996678789999999999997144224885999970668778889999999--969555615995899825758
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 222014799999986101
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~ 166 (470)
|.|+.+.++++.+.+...
T Consensus 163 G~Gi~e~f~wL~~~ikk~ 180 (182)
T PTZ00133 163 AQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 949899999999999986
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=9.2e-17 Score=131.91 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=88.5
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf 640356425678876520121100024566542023114203406--999817110444443000111000121001201
Q gi|255764471|r 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 (470)
Q Consensus 208 ~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~ 285 (470)
++|.+|||||||+|++++.. ...+..+.|+.|.....+..++.+ +.++||||..+ +... ....++.
T Consensus 1 vvG~~~~GKSsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE-FVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER----------FRSL-RRLYYRG 68 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH----------HHHH-HHHHHHH
T ss_conf 92949968899999997198-8876468715789999999999999999998589511----------5678-9999753
Q ss_pred CEEEEEECCCCCCCHHHHH-----HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2059984553212202122-----32000000357665589442233541555666542013332004883111234533
Q gi|255764471|r 286 CETTIVLLDATIPFEKQDL-----RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 (470)
Q Consensus 286 advvi~viDa~~~~~~qd~-----~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~ 360 (470)
+|++++|+|+++.-+.++. .+.......+.|++++.||+|+.........+ ....+......|++++||++
T Consensus 69 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~ 144 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----LAEQLAKELGVPYFETSAKT 144 (157)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHH----HHHHHHHHCCCEEEEECCCC
T ss_conf 57999998658888899999999999997525898499998535615406688999----99999987898699984788
Q ss_pred CCCHHHHHHHHH
Q ss_conf 348589999999
Q gi|255764471|r 361 GEGLDDLMVSVL 372 (470)
Q Consensus 361 g~gi~~l~~~i~ 372 (470)
|.|++++++.+.
T Consensus 145 ~~~i~~l~~~i~ 156 (157)
T cd00882 145 GENVEELFEELA 156 (157)
T ss_pred CCCHHHHHHHHH
T ss_conf 839999999985
No 226
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=4.2e-16 Score=127.42 Aligned_cols=151 Identities=21% Similarity=0.152 Sum_probs=87.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
||.++|-.|||||||++++...+-. ...| |...-...+.+++..+.++|||| .|++... ...-.+
T Consensus 1 Kil~lG~~~~GKTsll~~~~~~~~~--~~~p--Tig~~~~~i~~~~~~~~iwD~~G----------~e~~r~~-~~~y~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGG----------QTSIRPY-WRCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCC--CCCC--CCCCCEEEEEECCEEEEEEECCC----------CCCCCHH-HHHHCC
T ss_conf 9999999999899999999709967--7578--48824699998988999996798----------6244627-887466
Q ss_pred CCEEEEEECCCCCCCHHH--HHHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 120599845532122021--2232---00000035766558944223354155566654201333200488311123453
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQ--DLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 (470)
Q Consensus 285 ~advvi~viDa~~~~~~q--d~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~ 359 (470)
.||.+++|+|+++.-+-+ -..+ +..-.-.+.|++++.||+|+..... ..++...+......-...+++.+||+
T Consensus 66 ~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~l~l~~~~~~~~~~~~tSA~ 143 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAI 143 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7889999974578789999999999998346536981999997667765779--99999998598741699689996787
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 3348589999999
Q gi|255764471|r 360 TGEGLDDLMVSVL 372 (470)
Q Consensus 360 ~g~gi~~l~~~i~ 372 (470)
+|+||++.++-+.
T Consensus 144 tG~gV~e~f~wL~ 156 (158)
T cd04151 144 KGEGLDEGMDWLV 156 (158)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8939999999985
No 227
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66 E-value=3.3e-16 Score=128.19 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=98.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||+++++..+- ..+..-|.-|.....+.++|.. +.++|||| .|.|...+. .
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~~-~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAG----------TEQFTAMRD-L 68 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf 1999989999889999999971959--88669954206999999999999998645765----------445556789-8
Q ss_pred EEECCEEEEEECCCCCCCHHHHHH-HHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 120120599845532122021223-200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLR-IVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~-i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||.+++|.|.++.-+-+... +.+.+. ..+.|+++|.||+||.+++.-..++. .. +..-.+++.+.+
T Consensus 69 y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~-~~----~a~~~~~~~~E~ 143 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QA----LARQWGCPFYET 143 (163)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHH-HH----HHHHCCCEEEEE
T ss_conf 8346876999704898899999999999999861888886787623547264078999999-99----999849989997
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|..+.+
T Consensus 144 SAk~~~nV~e~F~~l~~ 160 (163)
T cd04136 144 SAKSKINVDEVFADLVR 160 (163)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 44878058999999999
No 228
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.66 E-value=4.4e-16 Score=127.35 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=97.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||+++++... - ..+..-|.-|.....+..+|.. +.++|||| .|.|...+ ..
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~-f-~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~-~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT-F-IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG----------TEQFASMR-DL 68 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCCEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-HH
T ss_conf 399998999978999999997098-9-97558852331679999888999999998988----------54256788-99
Q ss_pred EEECCEEEEEECCCCCCCHHHHHH-HHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 120120599845532122021223-200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLR-IVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~-i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|.|.+..-+-+... +...+. ..+.|+|+|.||.||..++.-..++.+ .+..-.+++.+.+
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~-----~~a~~~~~~~~E~ 143 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGR-----ALAEEWGCPFMET 143 (163)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHH-----HHHHHCCCEEEEE
T ss_conf 85578656897127988999999999999999738999639997431340012769999999-----9999859989998
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|..+.+
T Consensus 144 SAk~~~nV~~~F~~l~~ 160 (163)
T cd04176 144 SAKSKTMVNELFAEIVR 160 (163)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 56878177999999999
No 229
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=7e-16 Score=125.95 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=99.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
..+|+++|-++||||||+.++++.. - .....-|.-|.....+.++|.. +.++|||| .|.|...+.
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~-f-~~~~~pTi~~~~~~~i~i~~~~~~l~iwDtaG----------qe~~~~l~~- 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHS-F-PDYHDPTIEDAYKQQARIDNEPALLDILDTAG----------QAEFTAMRD- 68 (172)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCCCEEEEEEECCEEEEEEEEECCC----------CCCCCCCHH-
T ss_conf 0699999999977999999997098-9-98758842220369999999999999997888----------513574515-
Q ss_pred EEEECCEEEEEECCCCCCCHHHH--HH--HHHHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220212--23--20000-003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQD--LR--IVDSV-FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd--~~--i~~~i-~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||.+++|.|.++.-+-+. .+ .+..+ ...+.|+++|.||+||.+.+.-..++.. . +..-.+++.+.
T Consensus 69 ~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~e~~-~----~a~~~~~~f~E 143 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-N----LAREFNCPFFE 143 (172)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHH-H----HHHHCCCEEEE
T ss_conf 564278656887316888899999999999999728899868998504566761888999999-9----99985997999
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
+||++|.||+++|..+.+-.
T Consensus 144 tSAk~~~nV~e~F~~l~~~i 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 74788828899999999999
No 230
>KOG0410 consensus
Probab=99.66 E-value=7.7e-16 Score=125.68 Aligned_cols=158 Identities=24% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCC-HHHHHHHHHCCCCEEEE-CCEEEEEEECHHCCCCCCCCC-HHHHHHCCC
Q ss_conf 430388640356425678876520121100-02456654202311420-340699981711044444300-011100012
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLT-GSQSGITRDSVSISWNW-KNHPIEIFDTAGMRKPSRITE-SLEQKTVKK 278 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~iv-s~~~GtTrD~i~~~~~~-~~~~~~liDTaGirkk~~~~~-~~E~~s~~~ 278 (470)
...-||+||.+|+|||||+|+|++. ++. -+.-.-|-|+.-..... .|+.+.|.||-|+-- ..-- -++.| .-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~A--al~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF--~A 250 (410)
T KOG0410 177 SSPVIAVVGYTNAGKSTLIKALTKA--ALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAF--QA 250 (410)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHH--HCCCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHH--HCCHHHHHHH--HH
T ss_conf 7862899963476688999998750--0583000110125313430079986799960346665--4749999999--99
Q ss_pred CCEEEECCEEEEEECCCCCCC-HHHHHHHHHHHHCCCCC-------CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 100120120599845532122-02122320000003576-------6558944223354155566654201333200488
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFNTGHA-------VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~-~~qd~~i~~~i~~~~k~-------~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
|+..+..||+++.|.|.+.|- ..|...++.-+..-|.| +|=|-||+|..+.....- +
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-----------~---- 315 (410)
T KOG0410 251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-----------K---- 315 (410)
T ss_pred HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC-----------C----
T ss_conf 9998752344899861579668888989999997469984777767874212356655667535-----------5----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 311123453334858999999999998414
Q gi|255764471|r 351 IYINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 351 ~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
...++|||++|.|++++++++.+.......
T Consensus 316 n~~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410 316 NLDVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 785143015675479999988887654322
No 231
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.1e-15 Score=122.76 Aligned_cols=126 Identities=25% Similarity=0.340 Sum_probs=92.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC--HHH-HHHH--------------HHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 388640356425678876520121100--024-5665--------------42023114203406999817110444443
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLT--GSQ-SGIT--------------RDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~iv--s~~-~GtT--------------rD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
+|||+|++.+||+||.-+|+-.--++- +.+ -|+| .-+--..++|+|+++.|+|||| +.
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG-----~~ 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPG-----YA 75 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCC-----CH
T ss_conf 9899908999989999999996699665765458973577878898679675135578888997999986989-----75
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH-HHHHHHHHHHC
Q ss_conf 000111000121001201205998455321220212232000000357665589442233541-55566654201
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKA 341 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~ 341 (470)
+..-| +.++++-+|.+++|+||..|+..|..++.+++.+.+.|.++.+||+|....+ ...++++++.+
T Consensus 76 DF~~e------~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad~~~~l~~i~~~l 144 (268)
T cd04170 76 DFVGE------TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHH------HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 79999------9998404783999941875476879999999998599989999787878996477999999986
No 232
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=3.7e-16 Score=127.84 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=96.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHCCCCEEEE-CCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 0388640356425678876520121100024-56654202311420-340--6999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ-SGITRDSVSISWNW-KNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~-~GtTrD~i~~~~~~-~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
+||+++|-++||||||+++++...-.-..+. |.+=.|.....+.. ++. .+.++||||- |.|... +
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~----------e~~~~l-~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDM-V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC----------CCHHHH-H
T ss_conf 99999995995889999999978886688888864578899999978997999999979998----------400678-9
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHH-HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 0012012059984553212202122-32000000--35766558944223354155566654201333200488311123
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~-~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
...++.||++++|.|.++.-+-+.. ..++.+.. .+.|+++|.||+||.+.+.-..++.+. +..-..++.+.+
T Consensus 70 ~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~-----~a~~~~~~~~E~ 144 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQA-----FAQANQLKFFKT 144 (164)
T ss_pred HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHH-----HHHHCCCEEEEE
T ss_conf 999764268999970774668999999999999766898689998722445245569999999-----999889989998
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+++
T Consensus 145 SAk~g~nV~e~F~~lar~~ 163 (164)
T cd04101 145 SALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6688909899999999986
No 233
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=2e-15 Score=122.83 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=86.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC--HHH-HHH--------------HHHCCCCEEEECCEEEEEEECHHCCCCCCC
Q ss_conf 388640356425678876520121100--024-566--------------542023114203406999817110444443
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLT--GSQ-SGI--------------TRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~iv--s~~-~Gt--------------TrD~i~~~~~~~~~~~~liDTaGirkk~~~ 267 (470)
+|||+|+..+||+||.-+|+-.-.++- +.+ -|+ |..+--..++|++.+|.|+||||-
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~------ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH------ 74 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCC------
T ss_conf 98999389989999999999965712226633068303785499898487031058999989987999889884------
Q ss_pred CCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 000111000121001201205998455321220212232000000357665589442233
Q gi|255764471|r 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 (470)
Q Consensus 268 ~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli 327 (470)
.++. ..+..+++-+|.+++|+||.+|+..|..++.+++.+.+.|.++++||+|.-
T Consensus 75 ---~dF~--~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre 129 (237)
T cd04168 75 ---MDFI--AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred ---HHHH--HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf ---6566--689889763481699996588822344999999998599859986244578
No 234
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=2.8e-16 Score=128.69 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=100.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 443038864035642567887652012110002456654202311420340--699981711044444300011100012
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
+..++|+++|.++||||||+++++... -.-.-.|-...|.....+..+|. .+.++|||| .|.|...+
T Consensus 4 d~~~KIvlvGd~~VGKTSli~r~~~~~-F~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaG----------qe~~~~l~ 72 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAG----------QERFRTIT 72 (199)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH
T ss_conf 757799999979988899999995099-9998689755587899999999999999998999----------81235352
Q ss_pred CCEEEECCEEEEEECCCCCCCHH--HHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 10012012059984553212202--12232000000--357665589442233541555666542013332004883111
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFEK--QDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~~--qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
....+.||++++|+|.+..-+- -..+ +..+.+ ...|+|+|.||+|+.+.+.-..++... +..-.+++.+
T Consensus 73 -~~~~~~a~~~ilvyDit~~~Sf~~l~~w-~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~-----~a~~~~~~f~ 145 (199)
T cd04110 73 -STYYRGTHGVIVVYDVTNGESFVNVKRW-LQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK-----FAGQMGISLF 145 (199)
T ss_pred -HHHHHCCCCCEEEEECCCHHHHHHHHHH-HHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHH-----HHHHCCCEEE
T ss_conf -6664246542389717988999999999-99999759987579998855447546999999999-----9998699799
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2345333485899999999999841
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKLWK 379 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~~~ 379 (470)
.+||++|.||+++|+.+.+..-..+
T Consensus 146 E~SAktg~nV~e~F~~i~~~i~~~~ 170 (199)
T cd04110 146 ETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9868999298999999999999974
No 235
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.66 E-value=2e-16 Score=129.67 Aligned_cols=56 Identities=39% Similarity=0.495 Sum_probs=48.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCC
Q ss_conf 08999718988788899998588501025898530223899999899899999658842
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~ 61 (470)
.+|+++|+||||||||+|+|.|++.++|++.|||||+..+-.. +..+.|+||||+.
T Consensus 84 ~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~i~~---~~~i~liDTPGi~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---TPTITLCDCPGLV 139 (141)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE---CCCEEEEECCCCC
T ss_conf 2689977888669999999858866876599941576689996---8999999898868
No 236
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.66 E-value=5.9e-16 Score=126.47 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=83.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 03886403564256788765201211000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
+||.++|-+|+|||||++++...+-+-+-++.|.+ ...+++++..+.++||||- |+|-.. ...-.
T Consensus 1 ~KililG~~~sGKTsll~~l~~~~~~~~~pT~g~~----~~~~~~~~~~l~iwD~~G~----------~~~r~l-~~~Y~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQ----------DKIRPL-WRHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCC----------CCCCHH-HHHHC
T ss_conf 99999999999989999999729967758968701----7999989899999978997----------214656-78647
Q ss_pred ECCEEEEEECCCCCCCHHHH--HHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 01205998455321220212--2320000---003576655894422335415556665420133320048831112345
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQD--LRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd--~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA 358 (470)
+.|+.++||+|+++.-.-++ ..+...+ .-.+.|++++.||.|+.+... .+++.+++....-.-....+..+||
T Consensus 66 ~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~~SA 143 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHHCCCEEEEEEEC
T ss_conf 68738999997777789999999999996235336982999997566778989--9999999686666379859998268
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 3334858999999
Q gi|255764471|r 359 RTGEGLDDLMVSV 371 (470)
Q Consensus 359 ~~g~gi~~l~~~i 371 (470)
++|+|+++.++-+
T Consensus 144 ~tG~Gv~e~f~WL 156 (159)
T cd04150 144 TSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCHHHHHHHH
T ss_conf 6793989999998
No 237
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=6.6e-16 Score=126.12 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=97.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211-00024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRL-LTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|+++|-++||||||+++++...=. -..++.|.+ .....+..+|+. +.++|||| .|.|...+ .
T Consensus 1 iKivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~--~~~~~~~~~~~~~~l~iwDtaG----------~e~f~~~~-~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKFEGKTILVDFWDTAG----------QERFQTMH-A 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEE--EEEEEEEECCEEEEEEEEECCC----------CCCCCHHH-H
T ss_conf 989999989967899999998097799726654157--9999999999999999997999----------84343246-9
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--212232000000--35766558944223354155566654201333200488311123
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
...+.|+++++|+|.++.-+ .-..++ +.+.+ ...|+++|.||+||-.... ++-. .+..-.++|.+.+
T Consensus 68 ~y~~~a~~~ilvfDit~~~Sf~~~~~w~-~~i~~~~~~~p~ilVgNK~DL~~~~~---~~~~-----~~a~~~~~~f~et 138 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWY-EELREYRPEIPCIVVANKIDLDPSVT---QKKF-----NFAEKHNLPLYYV 138 (161)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCHHH---HHHH-----HHHHHCCCEEEEE
T ss_conf 9735687679999689778899999999-99998686998999999711774258---9999-----9999869919999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 453334858999999999998
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~~~ 377 (470)
||++|.||+++|+.+.+..-+
T Consensus 139 SAk~g~nV~e~F~~l~~~~i~ 159 (161)
T cd04124 139 SAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
T ss_conf 078380979999999999984
No 238
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.66 E-value=2e-16 Score=129.69 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01210012012059984553212202122320000003576655894422335415556665420133320048831112
Q gi|255764471|r 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 276 ~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..+..++++.||++++|+||+.|++..|..+.+.+. +||.|+|+||+||++... .+++..+... ...++++
T Consensus 10 ~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~--~~~~~~~~~~-----~~~~~~~ 80 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKK--TKKWLKYFES-----KGEKVLF 80 (171)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHH--HHHHHHHHHC-----CCCCEEE
T ss_conf 999999998699999999898888765289999976--898899985555589789--9999999980-----7996799
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3453334858999999999998
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
+||+++.|+++|.+.+.+.+..
T Consensus 81 ~sa~~~~g~~~l~~~i~~~~~~ 102 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 8422665789999999997354
No 239
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=6.2e-16 Score=126.30 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=97.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|+++|.++||||||+.++++.+= ..+..-|. .|.....+..+|.. +.++|||| .|.|...+ .
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l~-~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAG----------QERFQSLG-V 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-H
T ss_conf 9899999899789999999952988--987577555169999999999999999996999----------83110688-9
Q ss_pred EEEECCEEEEEECCCCCCCHHH--HHHH---HHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0120120599845532122021--2232---000000---3576655894422335415556665420133320048831
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQ--DLRI---VDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~q--d~~i---~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
..++.||++++|+|.++.-+-+ ..++ ...... ...|+++|.||+||.+++.-..++..+... ....++
T Consensus 68 ~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~~e~~~~a~----~~~~~~ 143 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIP 143 (172)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHH----HCCCCE
T ss_conf 9865275799993389989999999999999997276776576389996336836418999999999999----769978
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11234533348589999999999984
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
.+.+||++|.||+++|..+.+..-+.
T Consensus 144 ~~E~SAk~~~nV~e~F~~l~~~~l~~ 169 (172)
T cd01862 144 YFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99975267919899999999999986
No 240
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=3.3e-16 Score=128.17 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=96.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
+|+++|-++||||||+++++..+ -.++...|+-|.....+..+|.. +.++||||- |.|........
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~~--f~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~----------e~~~~~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQ----------QQADTEQLERS 68 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCC----------CCCCHHHHHHH
T ss_conf 99999989977899999997498--9987599556305799999999999999928985----------01220125543
Q ss_pred EECCEEEEEECCCCCCCHHHHH-HHHHHH---H--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2012059984553212202122-320000---0--035766558944223354155566654201333200488311123
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDL-RIVDSV---F--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~-~i~~~i---~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
++.||.+++|.|.++.-+-+.. .+...+ . ..+.|+++|.||+||.+.+.-..++.++. ..-.+++.+.+
T Consensus 69 ~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~-----a~~~~~~f~E~ 143 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEV 143 (165)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH-----HHHCCCEEEEE
T ss_conf 0458789999865888999999999999999846699953998445545210367799999999-----99819989997
Q ss_pred CCCCC-CCHHHHHHHHHH
Q ss_conf 45333-485899999999
Q gi|255764471|r 357 SGRTG-EGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g-~gi~~l~~~i~~ 373 (470)
||++| .||+++|+.+.+
T Consensus 144 SAk~~~~~V~~~F~~l~~ 161 (165)
T cd04146 144 SAAEDYDGVHSVFHELCR 161 (165)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 520878269999999999
No 241
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=7.5e-16 Score=125.77 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=89.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-4202311420340--69998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|.++|.++||||||+.+++..+- ...+..-|. .|.....+..+|. .+.+||||| .|.|... +.
T Consensus 1 ~KIv~vGd~~VGKTsli~r~~~~~f-~~~~~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG----------~e~~~~l-~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG----------QERFRSV-TH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCC-HH
T ss_conf 9899999499879999999995978-9998677652477999999999999999997998----------6334646-47
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--21223200000---03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||++++|+|.++.-+ ....++ ..+. ..+.|+++|.||.||.+++.-..++.+. +.. -.+++.+.
T Consensus 69 ~~~~~a~~~ilvydit~~~Sf~~l~~w~-~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~-~a~----~~~~~f~E 142 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWL-TEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER-LAK----EYGVPFME 142 (191)
T ss_pred HHHHCCCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHH-HHH----HCCCEEEE
T ss_conf 7711777789997279889999999999-99998666785389861246553026799999999-999----82997999
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
+||++|.||+++|..+.+-.
T Consensus 143 tSAkt~~nI~e~F~~i~~~i 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 85489809799999999999
No 242
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=4.1e-16 Score=127.54 Aligned_cols=153 Identities=20% Similarity=0.169 Sum_probs=95.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.||+++|-++||||||++++++.+- .-...|-+..|.....++.+|.+ +.++|||| .|.|...+ ..
T Consensus 1 ~KIvllGd~~VGKTsli~r~~~~~f-~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaG----------qe~~~~~~-~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAG----------QERYQTIT-KQ 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 9899999499858999999942998-998788720898899999999999999997999----------60236355-88
Q ss_pred EEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220--21223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|+|.+..-+ .-..++ ..+. ....|+++|.||.|+.+.+.-..++.. .+..-.+++.+.+
T Consensus 69 y~r~a~~~ilvyDvt~~~Sf~~l~~w~-~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~~~~-----~~a~~~~~~~~et 142 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQHIMKWV-SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGN-----KLAKEYGMDFFET 142 (161)
T ss_pred HHHHHCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHH-----HHHHHCCCEEEEE
T ss_conf 876416889961489889999999999-9999878998649998732787862779999999-----9999869979996
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 453334858999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~ 374 (470)
||++|.||+++|..+.+.
T Consensus 143 SAk~~~nV~e~F~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 778982989999999964
No 243
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.65 E-value=2.1e-16 Score=129.48 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=96.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 03886403564256788765201211000245665420231142034069--9981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|.++||||||++++++.+ - ..+..-|.-|.....+..+|..+ .++|||| .|.|...+..
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~-f-~~~y~~Ti~~~~~~~~~~~~~~~~l~iwDt~G----------~e~~~~~~~~- 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-F-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAG----------QEEYDRLRPL- 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-C-CCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCHHH-
T ss_conf 989999999966999999996299-9-98758803466689999999999999998998----------7102413223-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHH------HHHHH-HCCCCCCCCCC
Q ss_conf 12012059984553212202122--32000000--3576655894422335415556------66542-01333200488
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLL------QDLRT-KAIKNLPQIGD 350 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~------~~~~~-~~~~~~~~~~~ 350 (470)
.++.||++++|.|.++.-+-++. +....+.. .+.|+++|.||+||.++..... ..+.. +..+.-..+..
T Consensus 68 ~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 44426589999968977889999999999999859998689999871001230002233114751589999999998499
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 31112345333485899999999
Q gi|255764471|r 351 IYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 351 ~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.+.+.+||++|.||+++|+.+.+
T Consensus 148 ~~f~E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CEEEEECCCCCCCHHHHHHHHHC
T ss_conf 88999787899598999999966
No 244
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=5.2e-16 Score=126.85 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=89.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|-++||||||+++++...=. -.-.|-.-.|.....+.++|.. +.++|||| .|.|...+ ..
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~~f~-~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l~-~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNG----------QERFRSLN-NS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-HH
T ss_conf 97999999997899999999519689-98688654035799999999999999998999----------71045789-99
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-32000000---357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
.++.||++++|+|.++.-+-+.. .....+.+ ...|+++|.||+||.+++.-..++.+ .+..-.+++.+.+|
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~-----~~a~~~~~~~~E~S 143 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAK-----SFCDSLNIPFFETS 143 (188)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHH-----HHHHHCCCEEEEEC
T ss_conf 8637867999803898789999999999999878986624510013447660679999999-----99998699899974
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 533348589999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~ 375 (470)
|++|.||+++|+.+.+..
T Consensus 144 Aktg~nV~e~F~~l~~~i 161 (188)
T cd04125 144 AKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 788909899999999999
No 245
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=3.4e-16 Score=128.10 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=97.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
+|+++|-++||||||+++++...= .....-|.-|.....++++|.. +.++|||| -|.|...+ ...
T Consensus 1 KIvvlGd~~VGKTSLi~rf~~~~F--~~~y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG----------~e~~~~l~-~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSG----------SYSFPAMR-KLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCHHHEEEEEEEECCEEEEEEEEECCC----------CCCCHHHH-HHH
T ss_conf 989999899779999999985989--98888872541889999899799999997877----------51301455-554
Q ss_pred EECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2012059984553212202122-3200000----0357665589442233541-55566654201333200488311123
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
++.||++++|.|.++.-+-+.. .+...+. ....|+|+|.||+||+++. .-..++....... -...+.+.+
T Consensus 68 ~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~----~~~~~f~Et 143 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVET 143 (198)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH----CCCCEEEEC
T ss_conf 1588668999616977999999999999999628889828999878765010478489999999985----599789987
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+-.
T Consensus 144 SAktg~nV~e~F~~l~r~i 162 (198)
T cd04147 144 SAKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7999949899999999997
No 246
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.65 E-value=2.9e-16 Score=128.54 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=89.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211-0002456654202311420340--69998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRL-LTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
+||+++|-++||||||++++++.+=. -..++.| .|.....+..++. .+.++|||| .|.|... +.
T Consensus 1 ~Kivl~Gd~~vGKTsli~r~~~~~f~~~~~~Tig--~~~~~k~~~~~~~~~~l~iwDtaG----------~e~~~~~-~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRVGGKRVKLQIWDTAG----------QERFRSV-TR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCEEEEEEEEECCC----------CHHHHHH-HH
T ss_conf 9899999499679999999972989998799764--578999999999999999998999----------7012267-89
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--21223200000---03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||++++|+|.++.-+ ....++ ..+. ..+.|+++|.||+||.+++.-..++... +..-..++.+.
T Consensus 68 ~~~~~a~~~ilvydit~~~Sf~~~~~w~-~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~E 141 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWL-SDARALASPNIVVILVGNKSDLADQREVTFLEASR-----FAQENGLLFLE 141 (161)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEECCCCCCHHCCCCCHHHHHH-----HHHHCCCEEEE
T ss_conf 9840577789953689889999999999-99998679996498603434400037889999999-----99985997999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 345333485899999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~ 373 (470)
+||++|.||+++|..+.+
T Consensus 142 ~SAk~~~nV~e~F~~la~ 159 (161)
T cd04113 142 TSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 741569058999999997
No 247
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=3.6e-15 Score=121.16 Aligned_cols=148 Identities=25% Similarity=0.302 Sum_probs=96.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEE--EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899--9996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIF--NIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~--~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.+|+++|.+|||||||+|+++..+-. -...|.+..|.....+.+++..+ .+.||||... + ..+ ....+
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~~f~-~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~-----~-~~l---~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD-ENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----F-RSI---TPSYY 70 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHH
T ss_conf 98999996996899999999709999-98488666479999999999999999997898265-----7-788---99997
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHHC---CCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEEEHHHCCCC
Q ss_conf 877989999759887762344-55533210---2332222056522301210----012455-31222201001110222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLRK---KNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVEISAEHDLG 151 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr~---~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~iSA~~g~G 151 (470)
..||++++|.|..+.-+-... ...+.+++ .+.|+++|.||+|+..... ...++. +++. ..+.+||++|.|
T Consensus 71 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~~~~ 149 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKTGEN 149 (159)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 5412756724489889999999999999986898882699997456301168999999999998699-799987688819
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
++++.+.|.+
T Consensus 150 i~~~F~~i~~ 159 (159)
T cd00154 150 VEELFQSLAE 159 (159)
T ss_pred HHHHHHHHHC
T ss_conf 8999999869
No 248
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=5.3e-16 Score=126.76 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=89.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|.++||||||+++++..+-. -.-.|-...|.....+.++|.. +.++|||| .|.|...+ ..
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G----------~e~~~~l~-~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAG----------QERFRSIT-SS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-HH
T ss_conf 98999998997799999999419999-98688456666779999999999999996799----------44664779-98
Q ss_pred EEECCEEEEEECCCCCCC--HHHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 120120599845532122--021223200000---035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPF--EKQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~--~~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|+|.++.- .....+ ...+. ..+.|+++|.||+||.+++.-..++.... ..-..++.+.+
T Consensus 69 ~~~~~~~~ilvfdi~~~~Sf~~i~~w-~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~ 142 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNW-LKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF-----AEEHGLPFFET 142 (164)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHH-HHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHH-----HHHCCCEEEEE
T ss_conf 83366536884368998999999999-9999986799982551164568565187999999999-----99849979998
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 453334858999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~ 374 (470)
||++|.||+++|+.+.+.
T Consensus 143 SAk~~~~v~e~F~~l~~~ 160 (164)
T smart00175 143 SAKTNTNVEEAFEELARE 160 (164)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 316690889999999999
No 249
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=9.5e-16 Score=125.05 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=96.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 3038864035642567887652012110002456654202311420340--69998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.++|+++|-++||||||++++++.+-. -.-.|-...|.-...+..+|. .+.++||||- |.|... +.
T Consensus 2 ~~Kiv~vGd~~vGKTsli~r~~~~~f~-~~y~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~----------e~~~~~-~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------ERFRTI-TS 69 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------CCCCCC-HH
T ss_conf 699999999997899999999439999-874785440489999999999999999989998----------234626-78
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHH--HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--21223200--000035766558944223354155566654201333200488311123
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVD--SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~--~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
..++.||++++|+|.+..-+ ....++-. .....+.|+++|.||.||.+++.-..++.+. +..-.+++.+.+
T Consensus 70 ~~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~~~~~~~-----~a~~~~~~~~E~ 144 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQE-----FADELGIPFLET 144 (166)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHH-----HHHHCCCEEEEE
T ss_conf 885632677997117998999999999999998678777448861320113146679999999-----999839969998
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+-.
T Consensus 145 SAk~g~nI~e~F~~l~~~i 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7687806899999999999
No 250
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.65 E-value=1.6e-15 Score=123.55 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=104.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|+++|-++||||||+++++..+ -.-.-.| |. .|.-...+..+|+. +.++||||..+-. ..-+.|+++ .+ .
T Consensus 1 iKivvlG~~gVGKTsli~rf~~~~-F~~~y~p-Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~-~tagqe~~~-~r-~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE-FPEEYIP-TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMD-PR-F 75 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCCCCC-CCCCHHHHH-HH-H
T ss_conf 989999979989999999997198-8887478-46616789999999999999999587730455-565212355-56-4
Q ss_pred EEEECCEEEEEECCCCCCCHHHHHH-HHHHHH------CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0120120599845532122021223-200000------035766558944223354155566654201333200488311
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQDLR-IVDSVF------NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd~~-i~~~i~------~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+.++.||.+++|.|.+..-+-++.+ +.+.+. ....|+|+|.||.||.+.+.-..++......+ ...++.
T Consensus 76 ~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~----~~~~~f 151 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK----SWKCGY 151 (198)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH----CCCCEE
T ss_conf 4014688899999886778889999999999998514799982899834543100356889999999985----199769
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 123453334858999999999998414
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
+.+||++|.||+++|+.+........+
T Consensus 152 ~EtSAK~~~nV~~~F~~lvr~i~~~~~ 178 (198)
T cd04142 152 LECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 988788996989999999999986044
No 251
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.64 E-value=1.8e-15 Score=123.27 Aligned_cols=153 Identities=21% Similarity=0.280 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--E-------E----EEE------------EEEECCEEEEEEECC
Q ss_conf 89997189887888999985885010258985302--2-------3----899------------999899899999658
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITR--D-------R----LYG------------QAIINGVIFNIVDTA 58 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Tr--d-------~----~~~------------~~~~~~~~~~liDT~ 58 (470)
-|+|+|.-..||+||..+|+.....+.....|.+| | | ... ...++++.+.|+|||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH----------
Q ss_conf 8420763689999999999999877989999759887762344555332102332222056522301210----------
Q gi|255764471|r 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR---------- 128 (470)
Q Consensus 59 G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~---------- 128 (470)
|. ..|..++ ..++.-+|.+++|||+.+|+.++.+++++...+.+.|+++++||+|..-.+.
T Consensus 82 GH-----~dF~~ev----~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day~~ 152 (222)
T cd01885 82 GH-----VDFSSEV----TAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred CH-----HHHHHHH----HHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHHHH
T ss_conf 56-----9899999----99998568179961045785778999999999859997999989036500117998999999
Q ss_pred ---HHHHH-------H----------HHCC----CCCEEEHHHCCCCCH--------HHHHHHHHHHHH
Q ss_conf ---01245-------5----------3122----220100111022201--------479999998610
Q gi|255764471|r 129 ---NFYEI-------Y----------SLDF----KEIVEISAEHDLGTS--------ELHSVIFKIFKQ 165 (470)
Q Consensus 129 ---~~~e~-------~----------~lg~----~~~i~iSA~~g~Gi~--------~L~~~i~~~~~~ 165 (470)
.+.++ . .+.| +++++-||++|.+.. .|+++|++.+|.
T Consensus 153 l~~iie~vN~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l~~fa~ly~ll~~iv~~iP~ 221 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999999872304330355321020777783899983237712675412189999999962899
No 252
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.64 E-value=6.3e-16 Score=126.28 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=98.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||+.+++...= ..+..-|.-|.....+..+|.+ +.++|||| .|.|...+. .
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG----------~e~~~~~~~-~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAG----------QEDYDRLRP-L 68 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCHH-H
T ss_conf 0999999899669999999970989--99847843689999999999999999997776----------613232404-4
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHH-------HHHHCCCCCC-CCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555666-------5420133320-048
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQD-------LRTKAIKNLP-QIG 349 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~-------~~~~~~~~~~-~~~ 349 (470)
.++.||++++|.|.++.-+-++. +....+.. .+.|+|+|.||.||.+++....+. +...-...+. .+.
T Consensus 69 ~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 31488789999865987999999999999999729899899998724334332345666540255668999999999749
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 83111234533348589999999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
....+.+||++|.||+++|+.+.+..
T Consensus 149 ~~~f~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 97899976899979899999999986
No 253
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.3e-15 Score=124.19 Aligned_cols=159 Identities=20% Similarity=0.177 Sum_probs=94.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEEC-CE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 038864035642567887652012110002456654--2023114203-40--699981711044444300011100012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWK-NH--PIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~-~~--~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
++|.++|-++||||||+++++... ..-.-.| |. |.-...++++ +. .+.+||||| .|.|....
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~-F~~~y~~--Tig~df~~k~i~~~~~~~v~l~iwDtaG----------qe~~~~l~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKA--TIGVDFALKVIEWDPNTVVRLQLWDIAG----------QERFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC--CCCEEEEEEEEEECCCEEEEEEEEECCC----------CCCCCCCH
T ss_conf 979999999978999999998299-9998888--7567789989996798199999986899----------83222003
Q ss_pred CCEEEECCEEEEEECCCCCCC--HHHHHHHHH------HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 100120120599845532122--021223200------000035766558944223354155566654201333200488
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPF--EKQDLRIVD------SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~--~~qd~~i~~------~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
...++.|+++|+|+|.+..- ..-..++-. .......|+++|.||+||.+......++..+...+ ...
T Consensus 68 -~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~----~~~ 142 (201)
T cd04107 68 -RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----NGF 142 (201)
T ss_pred -HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH----CCC
T ss_conf -755557764799982798899998999999999986213789871899866556411256899999999997----799
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 311123453334858999999999998414
Q gi|255764471|r 351 IYINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 351 ~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
...+.+||++|.||+++|..+.+-.-..++
T Consensus 143 ~~~~EtSAktg~nV~e~F~~l~~~i~~~~~ 172 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 809997799994989999999999986653
No 254
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.64 E-value=5.2e-16 Score=126.85 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=95.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC-CCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 038864035642567887652012110002456654202-3114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i-~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
+||+++|.++||||||++++++.+ -..+...|+.+.. ...+..+|.+ +.++||||- |.|...+ .
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~--f~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~----------~~~~~~~-~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK--FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ----------ERYHALG-P 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC----------CCCCCCC-H
T ss_conf 989999999967999999998398--99876775264799999999999999999958997----------3035563-1
Q ss_pred EEEECCEEEEEECCCCCCCHH--HHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212202--1223200000---03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEK--QDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~--qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||++++|+|.++.-+- ...+ .+.+. ....|++++.||.||.+++.-..++..+.. +. -+.+.+.
T Consensus 68 ~~~~~a~~~ilv~d~t~~~Sf~~i~~~-~~~i~~~~~~~~~iilvgnK~Dl~~~r~v~~~e~~~~a-~~----~~~~y~e 141 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKW-IKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYA-KS----VGAKHFE 141 (162)
T ss_pred HHEECCCEEEEEEECCCHHHHHHHHHH-HHHHHHHCCCCCCEEEECCCCCCHHHCCCCHHHHHHHH-HH----CCCEEEE
T ss_conf 330114457999638998999999999-99999876999746866332132540888999999999-98----2998999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 345333485899999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~ 373 (470)
+||++|.||+++|..+.+
T Consensus 142 ~Sak~g~nV~e~F~~l~~ 159 (162)
T cd04123 142 TSAKTGKGIEELFLSLAK 159 (162)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 812788198999999999
No 255
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=5.6e-15 Score=119.85 Aligned_cols=147 Identities=20% Similarity=0.340 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998998--9999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||+||++..+- ..++..|..|.....+.+++. .+.+.||+|... + ..+ ....+.
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~-----~-~~~---~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----F-SAM---RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHHH
T ss_conf 999999699679999999961959--98778830048999999766999999997999623-----5-578---899976
Q ss_pred HCCEEEEEECCCCCCCHHH-HHHHHHHH----CCCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEEEHHHCCCC
Q ss_conf 7798999975988776234-45553321----02332222056522301210----012455-31222201001110222
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD-HAITSFLR----KKNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVEISAEHDLG 151 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D-~~i~~~lr----~~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~iSA~~g~G 151 (470)
.||++++|.|..+.-+-.. ....+.++ ....|+++|.||+|+..... .+.+|. +++. ..+.+||++|.|
T Consensus 70 ~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~-~y~e~Sak~g~n 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 4368999732898789999999999999972878862999997456223078999999999998499-799984798949
Q ss_pred CHHHHHHHHHH
Q ss_conf 01479999998
Q gi|255764471|r 152 TSELHSVIFKI 162 (470)
Q Consensus 152 i~~L~~~i~~~ 162 (470)
++++.+.+.+.
T Consensus 149 V~e~F~~i~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999972
No 256
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=2.2e-15 Score=122.57 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=98.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-+|||||||+++|...+. ....| |.......+.+++..+.+-||||=.. .+.......+.
T Consensus 14 ~kililG~~~~GKTsil~~l~~~~~--~~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~---------~r~l~~~Yy~~ 80 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES--VTTIP--TIGFNVETVTYKNISFTVWDVGGQDK---------IRPLWRHYYTN 80 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCEEEEEEECCEEEEEEECCCCCC---------CCHHHHHHCCC
T ss_conf 9999998899998999999965997--77579--78810799998989999998999854---------55367775577
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHHH--HHHHHHHHC-CC----CCEEEHHHCCC
Q ss_conf 798999975988776--234455533210---2332222056522301210--012455312-22----20100111022
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQR--NFYEIYSLD-FK----EIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~~--~~~e~~~lg-~~----~~i~iSA~~g~ 150 (470)
||.++||+|+.+.-. ..-.++.+.|.. .+.|+++++||+|.+.... .+.+...+. +. .++++||++|.
T Consensus 81 a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCC
T ss_conf 61899998668778999999999999631531698699998456676788999999996866540797599982687896
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 20147999999861
Q gi|255764471|r 151 GTSELHSVIFKIFK 164 (470)
Q Consensus 151 Gi~~L~~~i~~~~~ 164 (470)
|+++.++++...+.
T Consensus 161 GI~e~f~wL~~~ik 174 (175)
T smart00177 161 GLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHHHHHHC
T ss_conf 98999999999844
No 257
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=7.9e-16 Score=125.61 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=94.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
..++|+++|-++||||||++++++.+-.- .-.|-.-.|.....+..+|.. +.++|||| .|.|...+
T Consensus 2 y~~KivlvGd~~vGKTsli~r~~~~~f~~-~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G----------~e~~~~~~- 69 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAG----------QERFRTIT- 69 (167)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHH-
T ss_conf 68999999999978899999996099999-8689864688999999999999999998999----------70011667-
Q ss_pred CEEEECCEEEEEECCCCCCCHHH--HHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 00120120599845532122021--2232000000---357665589442233541555666542013332004883111
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQ--DLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~q--d~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
...++.||++++|+|.++.-+-+ ..++ ..+.+ .+.|+++|.||+||.+.+.-..++..+. .+. .+++.+
T Consensus 70 ~~y~~~a~~~ilvfdit~~~Sf~~~~~w~-~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~-a~~----~~~~~~ 143 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWM-RNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL-ADE----YGIKFL 143 (167)
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHH-HHH----HCCEEE
T ss_conf 99856505889955689879999999999-999986699970576421245023077999999999-998----099699
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 23453334858999999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~ 374 (470)
.+||++|.||+++|+.+.+-
T Consensus 144 e~SAktg~nI~e~F~~l~~~ 163 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred EECCCCCCCHHHHHHHHHHH
T ss_conf 98225790789999999999
No 258
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=7.6e-16 Score=125.73 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=97.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 4430388640356425678876520121100024566542023114203406--99981711044444300011100012
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
+..++|+++|-++||||||++++++..=. -...|-...|.....++++|.. +.++||||- |.|...
T Consensus 5 d~~~KivllGd~~VGKTsli~r~~~~~f~-~~~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~----------e~~~~l- 72 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ----------ERFRSI- 72 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------CCCCCC-
T ss_conf 77989999998997999999999859899-986774124789999999999999999989998----------444515-
Q ss_pred CCEEEECCEEEEEECCCCCCCH--HHHHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1001201205998455321220--212232000000---35766558944223354155566654201333200488311
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIPFE--KQDLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+...++.||++++|+|.+..-+ ....+ +..+.+ ...|+|+|.||+||.+++.-..++. +.+..-.+++.
T Consensus 73 ~~~~~~~a~~~ilvydvt~~~Sf~~l~~w-~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~~-----~~~a~~~~~~~ 146 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEW-LREIEQYANNKVITILVGNKIDLAERREVSQQRA-----EEFSDAQDMYY 146 (169)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHH-----HHHHHHCCCEE
T ss_conf 57774236645998148988899999999-9999986898863897311343454178899999-----99999889999
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+.+||++|.||+++|..+.+
T Consensus 147 ~E~SAktg~nV~e~F~~la~ 166 (169)
T cd04114 147 LETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99868988088999999999
No 259
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=6.1e-16 Score=126.39 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=94.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 3886403564256788765201211000245665-42023114203406--99981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+|+++|-++||||||+++++...- ..+..-|. .|.-...++.+|.+ +.++|||| .|.|...+ ..
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaG----------qe~f~~l~-~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAG----------QERFKCIA-ST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 899999899898999999963988--997256345058999999999999999998999----------97466443-77
Q ss_pred EEECCEEEEEECCCCCCCH--HHHHHHHHHHHCC---CCCCCEEEECCCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220--2122320000003---576655894422335415556-665420133320048831112
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--KQDLRIVDSVFNT---GHAVVLALNKWDMVSDKLNLL-QDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~--~qd~~i~~~i~~~---~k~~iiv~NK~Dli~~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.++.||++++|+|.++.-+ .-..++-..+... ..++++|.||+||.+.+.... ++.... +..-..++.+.
T Consensus 69 y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~----~a~~~~~~~~E 144 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIK----LAAEMQAEYWS 144 (170)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHH----HHHHCCCEEEE
T ss_conf 73278758999978987899999999999998508999829999984137987557644899999----99877987999
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 345333485899999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~ 376 (470)
+||++|.||+++|..+.+..-
T Consensus 145 ~SAk~g~nV~e~F~~ia~~~~ 165 (170)
T cd04108 145 VSALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCCHHHHHHHHHHHHH
T ss_conf 855788187999999999998
No 260
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=9.1e-16 Score=125.18 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=95.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 303886403564256788765201211000245665-4202311420340--6999817110444443000111000121
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
.++|+++|-++||||||+++++..+ -..+.+-|. .|.....+.++|. .+.++|||| .|.|....
T Consensus 2 ~~KivlvGd~~VGKTsli~r~~~~~--f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~~- 68 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG----------QERFRAVT- 68 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCC-
T ss_conf 4999999999957999999991298--8999999744688999999999999999998999----------85444252-
Q ss_pred CEEEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220--21223200000---0357665589442233541555666542013332004883111
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
....+.||++++|+|.+..-+ ....++ ..+. ..+.|+++|.||+||.+.+.-..++..+... -.+++.+
T Consensus 69 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~-~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~-----~~~~~~~ 142 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWL-TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFL 142 (166)
T ss_pred HHHEECCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHH-----HCCCEEE
T ss_conf 11143154659972587476799999999-99998569997587034015744438999999999999-----8699899
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 2345333485899999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~ 373 (470)
.+||++|.||+++|..+.+
T Consensus 143 E~SAk~g~nV~e~F~~l~~ 161 (166)
T cd04122 143 ECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCCCCCHHHHHHHHHH
T ss_conf 9865878088999999999
No 261
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=1.2e-15 Score=124.40 Aligned_cols=154 Identities=21% Similarity=0.182 Sum_probs=101.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEEEEEEEE---------------------------------EEC
Q ss_conf 899971898878889999858850102--589853022389999---------------------------------989
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVV--GNHPGITRDRLYGQA---------------------------------IIN 48 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv--~~~~g~Trd~~~~~~---------------------------------~~~ 48 (470)
-|..+|.---|||||..+|+|..-.-- .-.-|.|-+.=|..+ .-.
T Consensus 39 NIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c~~~~t~ 118 (460)
T PTZ00327 39 NIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGCGHKMTL 118 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 89887462898999999986775010656787587212054330111365677631010146666555445555654312
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCHHHHCCCHH
Q ss_conf 989999965884207636899999999999998779899997598877-62344555332102332-2220565223012
Q gi|255764471|r 49 GVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI-TPYDHAITSFLRKKNIP-IIIVSNKMDTRIA 126 (470)
Q Consensus 49 ~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~-~~~D~~i~~~lr~~~~~-~ilv~NK~D~~~~ 126 (470)
-+.|-+||.||. +.+-..|.. ...-.|.+++||+|.+|. .|+.++-+..++..+.+ +++++||+|....
T Consensus 119 ~Rh~s~VDcPGH-----~~l~~nmi~----Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK~DlV~~ 189 (460)
T PTZ00327 119 KRHVSFVDCPGH-----DILMATMLN----GAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE 189 (460)
T ss_pred CEEEEEEECCCH-----HHHHHHHHH----CHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf 204899868987-----999999874----76337679999986888876468999999997289719999535445588
Q ss_pred HHHHH------HHHHH--C-CCCCEEEHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 10012------45531--2-22201001110222014799999986101
Q gi|255764471|r 127 QRNFY------EIYSL--D-FKEIVEISAEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 127 ~~~~~------e~~~l--g-~~~~i~iSA~~g~Gi~~L~~~i~~~~~~~ 166 (470)
+.... +|.+- + -.+++|+||.++.|++.|++.+...++..
T Consensus 190 e~~~~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~P 238 (460)
T PTZ00327 190 VQALDQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQIPIP 238 (460)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCCC
T ss_conf 9999999999998525767799987565445058799999999758999
No 262
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=1.1e-15 Score=124.65 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=96.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 88640356425678876520121100024566542023114203406--9998171104444430001110001210012
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
|+++|.++||||||+.+++..+=. .+..-|..|.....+.+++.. +.++|||| .|.|...+.. .+
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG----------~e~~~~l~~~-~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAG----------QEDYDRLRPL-SY 67 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCCHH-HC
T ss_conf 599897897599999999539899--9857850578999999999999999994898----------7034545001-10
Q ss_pred ECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHH-------HHHHHCCCCC-CCCCCC
Q ss_conf 012059984553212202122--32000000--35766558944223354155566-------6542013332-004883
Q gi|255764471|r 284 RTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQ-------DLRTKAIKNL-PQIGDI 351 (470)
Q Consensus 284 ~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~-------~~~~~~~~~~-~~~~~~ 351 (470)
+.||++++|.|.++.-+-+.. +....+.+ .+.|+|+|.||.||.+++....+ .+.....+.+ ..+...
T Consensus 68 ~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~ 147 (174)
T smart00174 68 PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV 147 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 48868999975898789999999899999986889869999875425012333545533146500299999999983997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 111234533348589999999999
Q gi|255764471|r 352 YINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 352 ~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
+.+.+||++|.||+++|+.+.+..
T Consensus 148 ~y~EtSAk~g~nV~e~F~~l~r~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899964588949899999999997
No 263
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.64 E-value=3.3e-15 Score=121.41 Aligned_cols=157 Identities=23% Similarity=0.296 Sum_probs=96.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 03886403564256788765201211000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
++|.++|-++||||||+++++..+= ....| |+- .-...-.+....+.+||||| .|.|...+.. ..
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~~F--~~~~~-Tig-~~~~~k~~~~~~l~IwDTaG----------qE~f~sl~~~-y~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF--KDTVS-TVG-GAFYLKQWGPYNISIWDTAG----------REQFHGLGSM-YC 65 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCC-EEEEEEECCEEEEEEEECCC----------CCCCCCCHHH-HH
T ss_conf 9899999999889999999972989--99888-713-68999876478899994798----------6224332688-85
Q ss_pred ECCEEEEEECCCCCC--CHHHHHHHHHHH--HCCCCCCCEEEECCCCCCCH-------------------HHHHH---HH
Q ss_conf 012059984553212--202122320000--00357665589442233541-------------------55566---65
Q gi|255764471|r 284 RTCETTIVLLDATIP--FEKQDLRIVDSV--FNTGHAVVLALNKWDMVSDK-------------------LNLLQ---DL 337 (470)
Q Consensus 284 ~~advvi~viDa~~~--~~~qd~~i~~~i--~~~~k~~iiv~NK~Dli~~~-------------------~~~~~---~~ 337 (470)
+.|+++|+|+|.++. +...+.++.... .....++++|.||.||.++. .-..+ .+
T Consensus 66 r~a~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 67988999997989899999999999999847999808999887121364344333333322344100354489999999
Q ss_pred HHHC------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4201------3332004883111234533348589999999999
Q gi|255764471|r 338 RTKA------IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 338 ~~~~------~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
...+ ..........+.+.+||++|.||+++|+.+.+..
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i 189 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99850220222111124577699914789979899999999999
No 264
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=8.5e-16 Score=125.39 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=96.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 03886403564256788765201211000245665420231142034069--9981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|-++||||||+++++... - ..+..-|.-|.....+.++|..+ .++|||| .|.|...+. .
T Consensus 2 fKIvllGd~~VGKTsli~r~~~~~-f-~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l~~-~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRD-L 68 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEECCCCC----------CHHHHHHHH-H
T ss_conf 299998999975999999997092-8-86568840468999999999999998514775----------432456788-8
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-3200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||.+++|.|.++.-+-++. .+...+. ..+.|+++|.||+||.+.+.-..++.+. +... .+++.+.+
T Consensus 69 y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~-~a~~----~~~~~~E~ 143 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQ----WGCAFLET 143 (164)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHH-HHHH----CCCEEEEE
T ss_conf 735786899996078777899999999999986289996399852145722206899999999-9998----59999996
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|..+.+
T Consensus 144 SAk~~~nV~~~F~~l~~ 160 (164)
T cd04175 144 SAKAKINVNEIFYDLVR 160 (164)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 68988178999999999
No 265
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=7.5e-16 Score=125.74 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=94.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|.++|.++||||||+++++... -..+....|. .|.....+.++|.. +.+|||||- |.|... +.
T Consensus 1 vKivlvGd~~VGKTsLi~r~~~~~-f~~~~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~----------e~~~~l-~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS----------ERYEAM-SR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHH-HH
T ss_conf 989999969987999999998597-998997876305889999999999999999919997----------312355-79
Q ss_pred EEEECCEEEEEECCCCCC--CHHHHHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212--2021223200000--035766558944223354155566654201333200488311123
Q gi|255764471|r 281 QSVRTCETTIVLLDATIP--FEKQDLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~--~~~qd~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
..++.||++++|.|.++. +.....|+ ..+. ....|+++|.||+||.++.... ..+..+-.+.+..-..++.+.+
T Consensus 69 ~y~~~a~~~ilvydit~~~Sf~~i~~W~-~~i~~~~~~~~iilVGnK~DL~~~~~~~-r~V~~~e~~~~a~~~~~~~~E~ 146 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWV-KELQNLEEHCKIYLCGTKSDLIEQDRSL-RQVDFHDVQDFADEIKAQHFET 146 (193)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECHHHHHCCCCC-CCCCHHHHHHHHHHCCCEEEEE
T ss_conf 8834774457883069879999899999-9999748999979997746632201666-4468999999999809969998
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4533348589999999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~~~ 375 (470)
||++|.||+++|+.+.+..
T Consensus 147 SAktg~nV~e~F~~la~~i 165 (193)
T cd04118 147 SSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 3898939899999999999
No 266
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=6.9e-16 Score=126.01 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 43038864035642567887652012110002456654--2023114203406--9998171104444430001110001
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
..++|+++|.++||||||++++++.+ -.....| |. |.....+.++|.. +.++|||| .|.|...
T Consensus 2 y~~Kiv~iGd~~VGKTsli~r~~~~~-f~~~~~~--Tig~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~~ 68 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKS--TIGVEFATRSIQIDGKTIKAQIWDTAG----------QERYRAI 68 (165)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC--CCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHH
T ss_conf 35899999999978999999997298-9998898--744787899999999999999998999----------7212678
Q ss_pred CCCEEEECCEEEEEECCCCCCCHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 210012012059984553212202122-32000000---35766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~~qd~-~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+ ...++.||++++|+|.++.-+-+.. ..+..+.+ ...|+++|.||.||.+++.-..++..+. ..-..++.
T Consensus 69 ~-~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~-----a~~~~~~~ 142 (165)
T cd01868 69 T-SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF-----AEKNGLSF 142 (165)
T ss_pred H-HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHH-----HHHCCCEE
T ss_conf 9-98733205148986269889999999999999985557735987023478688578889999999-----99859979
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+.+||++|.||+++|+.+.+
T Consensus 143 ~E~SAk~g~nV~e~F~~l~~ 162 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99678889298999999999
No 267
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.63 E-value=1.2e-15 Score=124.31 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=97.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||+++++...= ..+..-|.-|.....+..++.. +.++|||| .|.|...+ ..
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG----------~e~~~~l~-~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCSKNICTLQITDTTG----------SHQFPAMQ-RL 68 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 0999989999769999999964969--99868845420558999999999999998999----------84654232-44
Q ss_pred EEECCEEEEEECCCCCCCHHHHHH-HHHHHHC------CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 120120599845532122021223-2000000------357665589442233541555666542013332004883111
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDLR-IVDSVFN------TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~~-i~~~i~~------~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
.++.||++++|.|.++.-+-+..+ +.+.+.+ ...|+++|.||+|+...+.-..++.+.. .+. ..++.+
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~-a~~----~~~~~~ 143 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC-ATE----WNCAFM 143 (165)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH-HHH----CCCEEE
T ss_conf 506885799981389878999999999999999615888887899864246400278899999999-998----698899
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 234533348589999999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~ 375 (470)
.+||++|.||+++|+.+.++.
T Consensus 144 E~SAk~~~nV~e~F~~l~~l~ 164 (165)
T cd04140 144 ETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred EECCCCCCCHHHHHHHHHHCC
T ss_conf 974477948799999998140
No 268
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=7.8e-16 Score=125.64 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=96.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
.-++|+++|..+||||||+++++..+= .....|-+.-|.....++.++.. +.++|||| .|.|...+
T Consensus 4 ~~~KivvlGd~~VGKTsli~r~~~~~f-~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG----------~e~~~~l~- 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAG----------QERFRSLR- 71 (170)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-
T ss_conf 089999999999789999999973989-998888760798999999999999999998999----------72435241-
Q ss_pred CEEEECCEEEEEECCCCCCCHHH--HHHH---HHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00120120599845532122021--2232---0000---00357665589442233541555666542013332004883
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQ--DLRI---VDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~q--d~~i---~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~ 351 (470)
...++.||++++|.|.++.-+-+ ..++ .+.. .....|+++|.||+||-+ +.-..++.+... ......
T Consensus 72 ~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~-r~v~~~e~~~~a----~~~~~~ 146 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWC----RENGDY 146 (170)
T ss_pred HHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH-CCCCHHHHHHHH----HHCCCC
T ss_conf 766004773399997888799999999999999971445788840999961111303-788999999999----985997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1112345333485899999999
Q gi|255764471|r 352 YINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 352 ~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
+.+.+||++|.||+++|+.+.+
T Consensus 147 ~~~E~SAk~g~nV~~~F~~l~~ 168 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 8999888888188999999995
No 269
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.63 E-value=1.3e-15 Score=124.22 Aligned_cols=148 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCC--CCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 886403564256788765201211--000245665420231142034069998171104444430001110001210012
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRL--LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~--ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i 283 (470)
|.++|-+|+|||||+++|...+.. -+.++.|.. ...+.+++..+.++|++|-. .+-.. .....
T Consensus 2 Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G~~----~~~~~~~~~~~~iwD~~G~~----------~~r~l-w~~y~ 66 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQG----------KYRGL-WEHYY 66 (162)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCCC----------CCCHH-HHHHH
T ss_conf 99999999988999999972898756416850757----89998399889999858874----------42055-89870
Q ss_pred ECCEEEEEECCCCCC--CHHHHHHHHHHH-----HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 012059984553212--202122320000-----003576655894422335415556665420133-320048831112
Q gi|255764471|r 284 RTCETTIVLLDATIP--FEKQDLRIVDSV-----FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINT 355 (470)
Q Consensus 284 ~~advvi~viDa~~~--~~~qd~~i~~~i-----~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 355 (470)
+.||.+++|+|+++. +......+-.++ .....|++|+.||+|+..... .+++.+.+.- .+.. ....+++
T Consensus 67 ~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~--~~ei~~~l~l~~~~~-~~~~i~~ 143 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKD-KPWHIFA 143 (162)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHCC-CCEEEEE
T ss_conf 5674489997076388899999999999717655179845999981477889999--999998858665248-9649999
Q ss_pred CCCCCCCCHHHHHHHH
Q ss_conf 3453334858999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSV 371 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i 371 (470)
+||++|+|+++.++=+
T Consensus 144 ~SA~tG~Gi~e~f~WL 159 (162)
T cd04157 144 SNALTGEGLDEGVQWL 159 (162)
T ss_pred EECCCCCCHHHHHHHH
T ss_conf 7897897989999998
No 270
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.63 E-value=1.1e-15 Score=124.54 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=94.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|-++||||||+.+++..+ -. .+..-|.-|.....+..+|.. +.++|||| .|.|...+ ..
T Consensus 2 ~KvvlvGd~~VGKTsli~r~~~~~-F~-~~y~~Ti~~~~~k~~~i~~~~~~l~iwDtaG----------~e~~~~l~-~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH-FV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAG----------QEEYSAMR-DQ 68 (162)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCCCCCEEEEEEEECCEEEEEEEEECCC----------CCCCCHHH-HH
T ss_conf 399998999988999999998392-88-7568855527999999999999999997998----------60111478-98
Q ss_pred EEECCEEEEEECCCCCCCHHHH--HHHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212--23200000----03576655894422335415556665420133320048831112
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD--LRIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd--~~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
.++.||++++|.|.++.-+-+. .++ ..+. ....|+++|.||+||.+ +.-..++.+ .+.+. .+++.+.
T Consensus 69 ~~~~a~~~ilvydvt~~~Sf~~v~~w~-~~i~~~~~~~~~piilVgNK~Dl~~-r~V~~~e~~-~~a~~----~~~~f~E 141 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSFEDIHTYR-EQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQ-DLAKS----YGIPYIE 141 (162)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCCEEEEEEEECCHHH-CCCCHHHHH-HHHHH----CCCEEEE
T ss_conf 715787799996179889999899999-9999854888854999976535645-558899999-99998----0998999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 345333485899999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~ 373 (470)
+||++|.||+++|..+.+
T Consensus 142 ~SAk~~~nV~e~F~~l~~ 159 (162)
T cd04138 142 TSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 738998598999999999
No 271
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.63 E-value=2.2e-15 Score=122.66 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=100.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 430388640356425678876520121100024566542023114203406--999817110444443000111000121
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
++++|.++|-++||||||+.+++..+= ..+.--|.-+........+|.+ +.++|||| .|.|...++
T Consensus 2 ~~~KivlvGd~~VGKTsli~r~~~~~F--~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG----------~e~~~~~~~ 69 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG----------QEEYDRLRT 69 (191)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHHH
T ss_conf 518999999999899999999972999--98646621000467899999999999985888----------700356778
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHH--------CCCCCC-
Q ss_conf 0012012059984553212202122--32000000--3576655894422335415556665420--------133320-
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTK--------AIKNLP- 346 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~--------~~~~~~- 346 (470)
. ..+.||++++|+|.++.-+-+.. +....+.. .+.|+++|.||.||..+.... +++.+. ....+.
T Consensus 70 ~-~~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~-~~~~e~~~~~vs~eeg~~~a~ 147 (191)
T cd01875 70 L-SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTL-KKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred H-HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf 7-74478689999857977889999999999999709699789998880102345778-887764137556999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0488311123453334858999999999
Q gi|255764471|r 347 QIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 347 ~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
.+...+.+.+||++|.||+++|+.+.+.
T Consensus 148 ~~~~~~y~EtSAkt~~nV~e~F~~l~k~ 175 (191)
T cd01875 148 QIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 8099889990689896989999999999
No 272
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=9.3e-16 Score=125.11 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|.++|-++||||||+.+++...= ..+..-|--|.....+..+|+. +.++|||| .|.|...+..
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaG----------qe~~~~~~~~- 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG----------QEDYDRLRPL- 68 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEECCCC----------CCCCHHHHHH-
T ss_conf 6999989999869999999973999--99868837887679999999999999986999----------7240678899-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHH--------HCCCCC-CCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555666542--------013332-004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRT--------KAIKNL-PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~--------~~~~~~-~~~ 348 (470)
.++.||++++|.|.++.-+-+.. +....+.. .+.|+|+|.||.||.+++... +.+.. .-...+ ..+
T Consensus 69 ~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~-~~~~~~~~~~vs~~eg~~~a~~~ 147 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTI-EKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 87406689999867987889999999999999858899979874730131004567-78865146775899999999875
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88311123453334858999999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
..++.+.+||++|.||+++|+.+.+.
T Consensus 148 ~~~~f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99789991878895979999999951
No 273
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.63 E-value=1.9e-15 Score=122.97 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=95.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|.++|.++||||||+++++... -.-.-.| |.-|.....+.++|.. +.+||||| -|.|...+ ..
T Consensus 1 yKIvvlGdsgVGKTSLi~Rf~~~~-F~~~y~p-Ti~d~~~k~i~i~g~~v~L~IwDTaG----------qe~f~sl~-~~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR-FEEQYTP-TIEDFHRKLYSIRGEVYQLDILDTSG----------NHPFPAMR-RL 67 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCC-CHHHEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 979999989978999999996496-8998788-83531889999999999999996766----------53687442-01
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHH------------CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 12012059984553212202122-3200000------------0357665589442233541555666542013332004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF------------NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~------------~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~ 348 (470)
.++.+|++++|.|.++.-+-++. .+.+.+. ....|+++|.||.||-+.+.-..++..+.....
T Consensus 68 y~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~Vs~eEa~~~~A~~---- 143 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD---- 143 (247)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHH----
T ss_conf 3121778999997998789998999999999864001001357888758998665543201787999999999976----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8831112345333485899999999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
.++..+.+||++|.||+++|..+.....
T Consensus 144 ~~~~f~EtSAKt~~NV~E~F~~L~~~~~ 171 (247)
T cd04143 144 ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 8987998878999498999999998549
No 274
>KOG2423 consensus
Probab=99.63 E-value=9.4e-16 Score=125.09 Aligned_cols=159 Identities=20% Similarity=0.286 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCC--CCCCCCCHHHHCCCHHHHH-HH--HHHHHCCCC-CEE
Q ss_conf 99999999999877989999759887762344555332102--3322220565223012100-12--455312222-010
Q gi|255764471|r 70 KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMDTRIAQRN-FY--EIYSLDFKE-IVE 143 (470)
Q Consensus 70 ~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~--~~~~ilv~NK~D~~~~~~~-~~--e~~~lg~~~-~i~ 143 (470)
+.|-......|+.+|+++.|+|||++....-..+..+|++. .|.+|+|+||||+...-.. .| .+... ... .+-
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSke-yPTiAfH 279 (572)
T KOG2423 201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE-YPTIAFH 279 (572)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEE
T ss_conf 578998887503220368852156876654178999986328752168885135500188899999997522-7624540
Q ss_pred EHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 01110222014799999986101234511221000011111122211123343323444303886403564256788765
Q gi|255764471|r 144 ISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 (470)
Q Consensus 144 iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l 223 (470)
-|-.+..|-..|+..+.+.-.- ....+-|.|+++|.|||||||++|+|
T Consensus 280 Asi~nsfGKgalI~llRQf~kL--------------------------------h~dkkqISVGfiGYPNvGKSSiINTL 327 (572)
T KOG2423 280 ASINNSFGKGALIQLLRQFAKL--------------------------------HSDKKQISVGFIGYPNVGKSSIINTL 327 (572)
T ss_pred HHHCCCCCHHHHHHHHHHHHHH--------------------------------CCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 2223765216999999999864--------------------------------46765225666248887558888887
Q ss_pred HCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCC
Q ss_conf 20121100024566542023114203406999817110444
Q gi|255764471|r 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 (470)
Q Consensus 224 ~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk 264 (470)
-.++.+-|.++||-|.-=-+.. --+.+-|||.||+--.
T Consensus 328 R~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyp 365 (572)
T KOG2423 328 RKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYP 365 (572)
T ss_pred HHCCCCCCCCCCCCCHHHHHHH---HHHCEEEECCCCCCCC
T ss_conf 5345311258888403889998---8721367447972488
No 275
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.63 E-value=1e-15 Score=124.87 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=99.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|.++||||||+.+++... -.-.-.| |.-|.....+.++|++ +.++|||| .|.|...+. .
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~-f~~~y~p-ti~~~~~~~~~~~~~~v~l~iwDTaG----------~e~~~~l~~-~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAG----------QEDYDRLRP-L 68 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-CCCCCCC-CEEEEEEEEEEECCEEEEEEEEECCC----------CCCCHHHHH-H
T ss_conf 799998999958899999996498-9998678-63478999999999999999998999----------745124658-8
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHH-------HHHHHHHCCCCCC-CCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555-------6665420133320-048
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNL-------LQDLRTKAIKNLP-QIG 349 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~-------~~~~~~~~~~~~~-~~~ 349 (470)
.++.+|++++|.|.++.-+-++. +.+..+.. .+.|+++|.||.||.++.... .+.+..+..+.+. .+.
T Consensus 69 ~~~~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 77138888999637987889999999999999829899889999872033566667776440265668999999999759
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 83111234533348589999999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
..+.+.+||++|.||+++|+.++.++
T Consensus 149 ~~~y~EtSAk~g~nV~e~F~~~i~~A 174 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 95999913378959799999999986
No 276
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=2.5e-15 Score=122.23 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=97.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 38864035642567887652012110002456654-2023114203406--99981711044444300011100012100
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR-DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr-D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+|.++|.++||||||+++++...= ..+. -.|. |.....+..+|.. +.++|||| .|.|...+..
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~y-~~Ti~~~~~~~~~v~~~~v~l~iwDTaG----------qe~~~~i~~~- 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF--PQVY-EPTVFENYVHDIFVDGLHIELSLWDTAG----------QEEFDRLRSL- 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCC-CCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHHH-
T ss_conf 899999799769999999970999--9986-8837899999999999999999984778----------5000035567-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC---------CCC
Q ss_conf 12012059984553212202122--320000003--57665589442233541555666542013332---------004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---------PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~---------~~~ 348 (470)
.++.||++++|.|.+..-+-+.. +....+.+. +.|+++|.||+||.+.+... ........... ..+
T Consensus 68 ~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~-~~~~~~~~~~is~~eg~~~Ak~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNER-DDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHH-HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 64378645999978987899999999999999749799789999880046532356-77766304665899999999982
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88311123453334858999999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
...+.+.+||++|.||+++|..+.+.
T Consensus 147 ~~~~y~EtSAkt~~nV~e~F~~lar~ 172 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99789996806794989999999999
No 277
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.9e-15 Score=122.99 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=95.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 43038864035642567887652012110002456654--2023114203406--9998171104444430001110001
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
..+||+++|.++||||||++++++.+= ... ...|. |.....+..+|.. +.++|||| .|.|...
T Consensus 2 ~~~Kiv~lGd~~vGKTsli~r~~~~~f--~~~-~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG----------~e~~~~l 68 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTF--SER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAG----------QERFRTI 68 (165)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCC--CCC-CCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCC
T ss_conf 589999999999589999999964999--998-799754378999999999999999998999----------8344535
Q ss_pred CCCEEEECCEEEEEECCCCCCCHHHHH-HHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 210012012059984553212202122-3200000---035766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~~qd~-~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+ ...++.||++++|.|.++.-+-+.. .....+. ..+.|+++|.||.||.+++.-..++... +.+.+ ....+
T Consensus 69 ~-~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~~~~~-~a~~~---~~~~~ 143 (165)
T cd01864 69 T-QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACT-LAEKN---GMLAV 143 (165)
T ss_pred C-HHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHH-HHHHC---CCCEE
T ss_conf 0-7552215666997138998999999999999998769998438887723768628999999999-99983---99769
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+.+||++|.||+++|..+.+
T Consensus 144 ~E~SAk~~~nV~e~F~~la~ 163 (165)
T cd01864 144 LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99788858198999999998
No 278
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.63 E-value=2.5e-15 Score=122.21 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=56.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
||.++|-+|+||||++++|.+.+-.-+.++.|.. ...+++++..+.++||+|= |+|-.. ...-.+
T Consensus 1 KIlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~----~~~i~~~~~~l~iwD~gG~----------~~~r~~-w~~Yy~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFN----VETVEYKNLKFTIWDVGGK----------HKLRPL-WKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCC----------CCCCHH-HHHHCC
T ss_conf 9999998999889999999579968977868816----6999989889999989997----------244636-787555
Q ss_pred CCEEEEEECCCCCCCHHHH--HHH---HHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCC
Q ss_conf 1205998455321220212--232---000000357665589442233541555666542013-3320048831112345
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQD--LRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISG 358 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd--~~i---~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~~iSA 358 (470)
.||.++||+|+++.-.-++ ..+ +....-.++|++++.||.|+-..- ..+++.+.+. ..+..-....+..+||
T Consensus 66 ~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~--~~~ei~~~l~l~~~~~~~~~~i~~~SA 143 (169)
T cd04158 66 NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL--SVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CHHHHHHHHCCHHHCCCCCEEEEEEEC
T ss_conf 762799999863067799999999999712753798499997355677798--999999985705452699629995557
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 33348589999999
Q gi|255764471|r 359 RTGEGLDDLMVSVL 372 (470)
Q Consensus 359 ~~g~gi~~l~~~i~ 372 (470)
++|.|+++.++-+.
T Consensus 144 ~tG~Gi~e~~~WL~ 157 (169)
T cd04158 144 RSGMGLYEGLDWLS 157 (169)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 27959899999999
No 279
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=3e-15 Score=121.74 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|.++|.+|||||||+++|.....+-+.++.| .....+.+++..+.+-||||-.. + +.......+.|
T Consensus 2 KililG~~~sGKTsll~~l~~~~~~~~~pT~g----~~~~~~~~~~~~l~iwD~~G~~~-----~----r~l~~~Y~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDK-----I----RPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCCC-----C----CHHHHHHCCCC
T ss_conf 99999999999899999997299677589687----01799998989999997899721-----4----65678647687
Q ss_pred CEEEEEECCCCCCCH--HHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C--C--CCEEEHHHCCCC
Q ss_conf 989999759887762--3445553321---0233222205652230121--0012455312-2--2--201001110222
Q gi|255764471|r 84 HLILFLIDSKAGITP--YDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F--K--EIVEISAEHDLG 151 (470)
Q Consensus 84 D~il~vvD~~~g~~~--~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~--~--~~i~iSA~~g~G 151 (470)
+.++||+|+.+.-.- .-.++.+.|+ -.+.|+++++||+|.+... ..+.+...+- + . .++++||++|.|
T Consensus 69 ~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCC
T ss_conf 38999997777789999999999996235336982999997566778989999999968666637985999826867939
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
+.+.++++..
T Consensus 149 v~e~f~WL~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHC
T ss_conf 8999999855
No 280
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=1.7e-15 Score=123.44 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=95.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420340--699981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|-++||||||+++++..+- .-.-.|-+.-|.....+..++. .+.++|||| .|.|...+ ..
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~f-~~~y~~Tig~~~~~k~i~~~~~~i~l~iwDtaG----------qe~~~~l~-~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAG----------QERYRTIT-TA 69 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCH-HH
T ss_conf 8999999999688999999924988-997688763787999999999999999996999----------83455441-54
Q ss_pred EEECCEEEEEECCCCCCCHHHH-HHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1201205998455321220212-232000000---357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD-LRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd-~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
.++.||++++|.|.++.-+-+. ....+.+.+ ...|+++|.||.||.+.+.-..++.+ .+.+. .+++.+.+|
T Consensus 70 y~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~-~~a~~----~~~~~~E~S 144 (165)
T cd01865 70 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR-QLADQ----LGFEFFEAS 144 (165)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHH-HHHHH----CCCEEEEEC
T ss_conf 4113544899851788799999999999999868987259996024235551889999999-99998----699799976
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 533348589999999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~ 375 (470)
|++|.||+++|+.+.+..
T Consensus 145 Ak~~~nV~e~F~~l~~~i 162 (165)
T cd01865 145 AKENINVKQVFERLVDII 162 (165)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 898908899999999999
No 281
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.63 E-value=3.2e-16 Score=128.28 Aligned_cols=168 Identities=30% Similarity=0.436 Sum_probs=123.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCEEEECC-----------EEEEEEECHHCCCCCCCCC
Q ss_conf 303886403564256788765201211000245--665420231142034-----------0699981711044444300
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS--GITRDSVSISWNWKN-----------HPIEIFDTAGMRKPSRITE 269 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~--GtTrD~i~~~~~~~~-----------~~~~liDTaGirkk~~~~~ 269 (470)
..++.++|+||+|||+|+|.+++.++++++..| |+|++.....+..+| ..+.++||||+++.....
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~- 81 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYD- 81 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHH-
T ss_conf 5058997347766045554454101200102323332000000113455802343431024278986257711355554-
Q ss_pred HHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 01110001210012012059984553212202122320000003576655894422335415556665420133320048
Q gi|255764471|r 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 (470)
Q Consensus 270 ~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
.+.......+...+...|++++++|..++...++..+.+.....+.|+++++||+|+...+..............+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T TIGR00231 82 ALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLN 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHC
T ss_conf 45433223445444333333322211100102567787532212741699851336554675401000034555555423
Q ss_pred CCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf 831-1123453334858999999
Q gi|255764471|r 350 DIY-INTISGRTGEGLDDLMVSV 371 (470)
Q Consensus 350 ~~~-i~~iSA~~g~gi~~l~~~i 371 (470)
..+ ++.+||.++.|+..+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 162 GEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred CCCCEEECCHHHHCCHHHHHHHH
T ss_conf 66401111001110045566654
No 282
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=1.2e-15 Score=124.41 Aligned_cols=151 Identities=23% Similarity=0.301 Sum_probs=89.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 0388640356425678876520121100024-566542023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ-SGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~-~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
++|+++|-++||||||+++++..+= .... |-.-.|.....+.++|.. +.++|||| .|.|...+.
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG----------~e~~~~~~~- 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAG----------QERYRSLAP- 68 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHHH-
T ss_conf 7999999599689999999943989--998688666788999999999999999997999----------710027889-
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHHH---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--21223200000---03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSVF---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.||++++|+|.++.-+ ....++ ..+. ....|+++|.||+||.+++.-..++.+.... -.+++.+.
T Consensus 69 ~~~~~a~~~ilvydit~~~Sf~~~~~w~-~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e~~~~a~-----~~~~~~~E 142 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWV-KELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFE 142 (163)
T ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHH-----HCCCEEEE
T ss_conf 8851677149998189979999999999-99998559872367755335756508999999999999-----82997999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 345333485899999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~ 373 (470)
+||++|.||+++|+.+.+
T Consensus 143 ~SAk~~~nV~e~F~~l~~ 160 (163)
T cd01860 143 TSAKTGENVNELFTEIAK 160 (163)
T ss_pred ECCCCCCCHHHHHHHHHH
T ss_conf 862659078999999998
No 283
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.6e-15 Score=123.59 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=66.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCE-----------E----------EECC---EEEEEEECHHC
Q ss_conf 8864035642567887652012110002456654202311-----------4----------2034---06999817110
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS-----------W----------NWKN---HPIEIFDTAGM 261 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~-----------~----------~~~~---~~~~liDTaGi 261 (470)
|+|||.||||||||||+++..+ +-+++.|.||.|+-... + -.++ .++.|+|-||+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~-~~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGL 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHH
T ss_conf 9344889898899999997799-851279966767741620055688416664330433120147740033267521001
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCC
Q ss_conf 44444300011100012100120120599845532
Q gi|255764471|r 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 (470)
Q Consensus 262 rkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~ 296 (470)
-+..+..+++- ++=+..|+++|+++.|+|++
T Consensus 80 V~GAskG~GLG----NkFL~~iRe~DaiihVVd~s 110 (318)
T cd01899 80 VPGAHEGKGLG----NKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred HCCCCCCCCCH----HHHHHHHHHCCEEEEEEECC
T ss_conf 05664577665----99999998478899985047
No 284
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.62 E-value=1.7e-15 Score=123.42 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 43038864035642567887652012110002456654--2023114203406--9998171104444430001110001
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
..++|.++|-++||||||++++++.+= .-... .|. |.....+..+|.. +.++|||| .|.|...
T Consensus 3 y~~KivlvGd~~VGKTsli~r~~~~~f-~~~~~--~Tig~~~~~k~i~~~~~~~~l~iwDt~G----------~e~~~~l 69 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAG----------QESFRSI 69 (168)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCC-CCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCC
T ss_conf 888999999899788999999910989-99878--9850788999999999999999997999----------7334625
Q ss_pred CCCEEEECCEEEEEECCCCCCCH--HHHHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 21001201205998455321220--212232000000---3576655894422335415556665420133320048831
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPFE--KQDLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
+ ...++.||++++|.|.++.-+ ....++ ..+.+ .+.|+++|.||+||.+++.-..++.+. +..-.+++
T Consensus 70 ~-~~~~~~a~~~ilvydit~~~Sf~~l~~w~-~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~~e~~~-----~a~~~~~~ 142 (168)
T cd01866 70 T-RSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEA-----FAKEHGLI 142 (168)
T ss_pred H-HHHHHHHCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHH-----HHHHCCCE
T ss_conf 5-88866436899934458779999999999-99998679996599843423545407789999999-----99986999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1123453334858999999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
.+.+||++|.||+++|..+.+.
T Consensus 143 ~~E~SAk~~~nV~~~F~~l~~~ 164 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9997678880889999999999
No 285
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=2.3e-15 Score=122.45 Aligned_cols=145 Identities=17% Similarity=0.244 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530223899999899-899999658842076368999999999999987
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
+|.++|.+|||||||++|+...+..-+.++.|. ....+.+++ .++.+-||+|-.. + +.......+.
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~~~~~pTig~----~~~~~~~~~~~~l~iwD~~G~e~-----~----~~~~~~y~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGF----NVEMLQLEKHLSLTVWDVGGQEK-----M----RTVWKCYLEN 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE----EEEEEEECCEEEEEEEECCCCCC-----C----CHHHHHHHCC
T ss_conf 999999999999999999956987775776150----38999989989999997898624-----7----4158877456
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHH---CCCCCCCCCHHHHCCCHHHH--HHHH---HHHH--CC-CCCEEEHHHCC
Q ss_conf 798999975988776--23445553321---02332222056522301210--0124---5531--22-22010011102
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLR---KKNIPIIIVSNKMDTRIAQR--NFYE---IYSL--DF-KEIVEISAEHD 149 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~~--~~~e---~~~l--g~-~~~i~iSA~~g 149 (470)
||.++||+|..+.-. ..-..+.+.++ ..+.|++++.||+|.+.... ...+ +.++ .- -.++++||++|
T Consensus 68 a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAktG 147 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 77899998568678878799999999866353787499999863365667999999998699998539999998668849
Q ss_pred CCCHHHHHHHHH
Q ss_conf 220147999999
Q gi|255764471|r 150 LGTSELHSVIFK 161 (470)
Q Consensus 150 ~Gi~~L~~~i~~ 161 (470)
+|++++.+++..
T Consensus 148 egi~e~f~~la~ 159 (160)
T cd04156 148 EGLAEAFRKLAS 159 (160)
T ss_pred CCHHHHHHHHHC
T ss_conf 599999999857
No 286
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.62 E-value=1.5e-15 Score=123.71 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC----------C--EEEEEEECHHCCCCCCCCC
Q ss_conf 430388640356425678876520121100024566542023114203----------4--0699981711044444300
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK----------N--HPIEIFDTAGMRKPSRITE 269 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~----------~--~~~~liDTaGirkk~~~~~ 269 (470)
..++|+++|-++||||||+.++++.+ -.-.-.|-...|.-...+.++ + ..+.++||||
T Consensus 3 ~~~KivvvGd~~VGKTsli~r~~~~~-f~~~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaG--------- 72 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--------- 72 (180)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCC---------
T ss_conf 78899999999988899999996195-89986884322688999998476554445788589999998988---------
Q ss_pred HHHHHHCCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 01110001210012012059984553212--20212232000000----3576655894422335415556665420133
Q gi|255764471|r 270 SLEQKTVKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 (470)
Q Consensus 270 ~~E~~s~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~ 343 (470)
.|.|...+ ...++.|+.+++|.|.++. +.....++ ..+.. ...|+++|.||+||.+++.-..++..+ +.+
T Consensus 73 -qe~~~~l~-~~~~~~a~~~ilvydit~~~Sf~~l~~w~-~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~-~a~ 148 (180)
T cd04127 73 -QERFRSLT-TAFFRDAMGFLLIFDLTNEQSFLNVRNWM-SQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-LAD 148 (180)
T ss_pred -CHHHHHHH-HHHHHHHCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHH-HHH
T ss_conf -63047888-99987543658999689889999899999-999985466898578750323667508889999999-999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32004883111234533348589999999999
Q gi|255764471|r 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
. .+++.+.+||++|.||+++|+.+.+..
T Consensus 149 ~----~~~~~~E~SAk~g~nV~e~F~~l~~~i 176 (180)
T cd04127 149 K----YGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred H----CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8----499799980377919899999999999
No 287
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=2e-14 Score=116.18 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=98.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|.++||||||++|+++.+- ..++.-|..|.....+..++. .+.+.||+|-.. + ..+ ....+
T Consensus 1 fKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~-----~-~~l---~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED-----Y-AAI---RDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHH
T ss_conf 9799999999889999999971989--87748854416899999999999999998988662-----4-889---99988
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHH-H---CCCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-555332-1---023322220565223012100----12455-3122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFL-R---KKNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~l-r---~~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g~ 150 (470)
..||.+++|.|..+.-+-... .....+ + ....|+++|.||+|+...... ..++. ++|+ ..+.+||++|.
T Consensus 70 ~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~E~SAk~g~ 148 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 63768899997797788999999999999860878863698733032334177899999999998399-89998268790
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 201479999998610
Q gi|255764471|r 151 GTSELHSVIFKIFKQ 165 (470)
Q Consensus 151 Gi~~L~~~i~~~~~~ 165 (470)
|++++.+.+.+.+.+
T Consensus 149 nV~~~F~~l~~~i~~ 163 (164)
T cd04139 149 NVEKAFYDLVREIRQ 163 (164)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 889999999999972
No 288
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=122.03 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=97.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 43038864035642567887652012110002456654--2023114203406--9998171104444430001110001
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
..++|.++|-++||||||+++++... -. .+. -.|. |.-...+..+|.. +.+||||| .|.|...
T Consensus 5 p~~KIvllGd~~VGKTsLi~r~~~~~-F~-~~y-~pTig~d~~~~~~~~~~~~i~l~IwDTaG----------qe~f~sl 71 (209)
T PTZ00132 5 AQFKLILVGDGGVGKTTFVKRHLTGE-FE-KKY-IATLGVEVHPLKFYTNRGKICFNVWDTAG----------QEKFGGL 71 (209)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCC-CC-CCC-CCCCCEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCC
T ss_conf 76899999999967899999997199-69-987-77602798999999999999999998999----------7445566
Q ss_pred CCCEEEECCEEEEEECCCCCCC--HHHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2100120120599845532122--0212232000000--35766558944223354155566654201333200488311
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATIPF--EKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~~~--~~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i 353 (470)
+ ...++.|+.+++|+|.+..- ..-..|+ +.+.+ .+.|+++|.||+||.+.. -..++. .+..-.+++.
T Consensus 72 ~-~~yyr~a~~~ilVfDit~~~SF~~l~~W~-~ei~~~~~~ipivLVGNK~DL~~r~-V~~~~~------~~a~~~~~~f 142 (209)
T PTZ00132 72 R-DGYYIKGQCAIIMFDVTSRITYKNVPNWH-RDITRVCENIPIVLVGNKVDVKDRQ-VKAKQI------TFHRKKNLQY 142 (209)
T ss_pred C-CHHHCCCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCC-CCHHHH------HHHHHCCCEE
T ss_conf 5-14424898899984378878999999999-9999868998789997623224135-579999------9999879989
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 12345333485899999999
Q gi|255764471|r 354 NTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 354 ~~iSA~~g~gi~~l~~~i~~ 373 (470)
+.+|||+|.||+++|..+.+
T Consensus 143 ~EtSAKtg~NV~e~F~~Lar 162 (209)
T PTZ00132 143 YDISAKSNYNFEKPFLWLAR 162 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99726899397999999999
No 289
>KOG1145 consensus
Probab=99.62 E-value=5.4e-15 Score=119.97 Aligned_cols=152 Identities=23% Similarity=0.338 Sum_probs=116.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5089997189887888999985885010258985302238999998-998999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-|.|.|.|.---||.||+.+|-+..+| -+..-|.|+.+=--.+.. .|..++|.||||. ..|+. |+. +..
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----aAF~a-MRa---RGA 222 (683)
T KOG1145 153 PPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----AAFSA-MRA---RGA 222 (683)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCEE-HHHCCCCCCEECEEEEECCCCCEEEEECCCCH-----HHHHH-HHH---CCC
T ss_conf 986998601357700199887407220-13237710000229996389977887568747-----88999-986---268
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHHHHHCC------C--CCEEEHHHCCC
Q ss_conf 877989999759887762344555332102332222056522301210--0124553122------2--20100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEIYSLDF------K--EIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~------~--~~i~iSA~~g~ 150 (470)
.-+|+|++||-|.+|+.|+..+-.+..+..+.|+++++||||.+.... ...++.+.|+ | .++||||++|.
T Consensus 223 ~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145 223 NVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCC
T ss_conf 64447999997267756768999998876599789998436789989899999998769327770782369986511479
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++.|.+++.-.-
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145 303 NLDLLEEAILLLA 315 (683)
T ss_pred CHHHHHHHHHHHH
T ss_conf 8689999999999
No 290
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.62 E-value=2.9e-15 Score=121.83 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=102.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|.++|-+|||||||+++|.+....-+.++.|. ....+.+++..+.+-||||=.. + +.......+.|
T Consensus 1 KIlilGl~~sGKTtil~~l~~~~~~~~~pT~G~----~~~~i~~~~~~l~iwD~gG~~~-----~----r~~w~~Yy~~~ 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGF----NVETVEYKNLKFTIWDVGGKHK-----L----RPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----CEEEEEECCEEEEEEECCCCCC-----C----CHHHHHHCCCC
T ss_conf 999999899988999999957996897786881----6699998988999998999724-----4----63678755576
Q ss_pred CEEEEEECCCCCCC--HHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHH---HHHCCC---CCEEEHHHCCC
Q ss_conf 98999975988776--23445553321---0233222205652230121--001245---531222---20100111022
Q gi|255764471|r 84 HLILFLIDSKAGIT--PYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEI---YSLDFK---EIVEISAEHDL 150 (470)
Q Consensus 84 D~il~vvD~~~g~~--~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~---~~lg~~---~~i~iSA~~g~ 150 (470)
|.++||+|+.+.-. ..-.++.+.+. -.++|+++++||+|..... +.+.++ .++.-+ .++++||++|.
T Consensus 68 ~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCC
T ss_conf 27999998630677999999999997127537984999973556777989999999857054526996299955572795
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 20147999999861012
Q gi|255764471|r 151 GTSELHSVIFKIFKQKY 167 (470)
Q Consensus 151 Gi~~L~~~i~~~~~~~~ 167 (470)
|+.+.++++...+-..+
T Consensus 148 Gi~e~~~WL~~~ii~~~ 164 (169)
T cd04158 148 GLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 98999999999998657
No 291
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.62 E-value=4.6e-15 Score=120.44 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=94.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE--EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99971898878889999858850--1025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~--aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
|.++|-+|+|||||+++|..... +-+.++.| .....+.+++..|.+.|+||-.. +... .......
T Consensus 2 Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G----~~~~~~~~~~~~~~iwD~~G~~~-----~r~l----w~~y~~~ 68 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG----FNVESFEKGNLSFTAFDMSGQGK-----YRGL----WEHYYKN 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEEEECCEEEEEEECCCCCC-----CCHH----HHHHHCC
T ss_conf 999999999889999999728987564168507----57899983998899998588744-----2055----8987056
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHH-----CCCCCCCCCHHHHCCCHHH--HHHHHHHH---HCCC--CCEEEHHHC
Q ss_conf 798999975988776--23445553321-----0233222205652230121--00124553---1222--201001110
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLR-----KKNIPIIIVSNKMDTRIAQ--RNFYEIYS---LDFK--EIVEISAEH 148 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr-----~~~~~~ilv~NK~D~~~~~--~~~~e~~~---lg~~--~~i~iSA~~ 148 (470)
||.++||+|+.+.-. ....++...+. ..+.|+++++||+|..... ..+.+... +.-. .++++||++
T Consensus 69 ~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~t 148 (162)
T cd04157 69 IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALT 148 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCC
T ss_conf 74489997076388899999999999717655179845999981477889999999998858665248964999978978
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2220147999999
Q gi|255764471|r 149 DLGTSELHSVIFK 161 (470)
Q Consensus 149 g~Gi~~L~~~i~~ 161 (470)
|.|+++-++++..
T Consensus 149 G~Gi~e~f~WL~~ 161 (162)
T cd04157 149 GEGLDEGVQWLQA 161 (162)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9798999999865
No 292
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=4.8e-15 Score=120.31 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+..+|.++|-.|+||||++++|.+.+...+.++.|- -...+.+++..+.++|++|=. .+. .-+
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~~~~~~~~~PT~Gf----n~e~i~~~~~~~~~wDvgG~~----------~~R--~lW 80 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHP----TSEELTIGNIKFKTFDLGGHE----------QAR--RLW 80 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCC----CEEEEEECCEEEEEEECCCCC----------CCC--CCH
T ss_conf 7704899990699988999999807995315265587----459999899999999899984----------555--438
Q ss_pred E-EEECCEEEEEECCCCCC--CHHH--H-HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC-C--------
Q ss_conf 0-12012059984553212--2021--2-23200000035766558944223354155566654201333-2--------
Q gi|255764471|r 281 Q-SVRTCETTIVLLDATIP--FEKQ--D-LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-L-------- 345 (470)
Q Consensus 281 ~-~i~~advvi~viDa~~~--~~~q--d-~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~-~-------- 345 (470)
+ ..+.+|.++||+|+++. +.+- . .+++..-.-.+.|++|+.||.|+..... .+++.+.+.-. +
T Consensus 81 ~~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~--~~ei~~~L~L~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS--EEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHHHHHHCCCCCCCCCCCCCC
T ss_conf 888431137999997767789999999999998555006980899986667767989--999998839842015544334
Q ss_pred --CCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --00488311123453334858999999
Q gi|255764471|r 346 --PQIGDIYINTISGRTGEGLDDLMVSV 371 (470)
Q Consensus 346 --~~~~~~~i~~iSA~~g~gi~~l~~~i 371 (470)
+......|.++||++|.|+.+-++=+
T Consensus 159 ~~~~~r~~~i~~csA~tG~Gl~egl~WL 186 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred CCCCCCCEEEEEEEEECCCCHHHHHHHH
T ss_conf 5457761499965506796828999999
No 293
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=1.5e-15 Score=123.76 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=95.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406--999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
+|+++|.+.||||||+.+++... - ..+..-|.-|.....+.++|.. +.++|||| .|.|...+ ...
T Consensus 1 KivviGd~gVGKTsli~r~~~~~-F-~~~y~pTi~~~~~k~~~~~~~~~~l~iwDtaG----------~e~~~~l~-~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-F-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAG----------QEEYTALR-DQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCEEEEEEEEECCEEEEEEEEECCC----------CCCHHHHH-HHH
T ss_conf 98999989987899999996297-9-98869972478899999999999999998999----------73116788-998
Q ss_pred EECCEEEEEECCCCCCCHHHHHH-HHHHH---H---CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223-20000---0---03576655894422335415556665420133320048831112
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLR-IVDSV---F---NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~-i~~~i---~---~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
++.||.+++|.|.++.-+-+... +.+.+ . ..+.|+++|.||+||.+++.-..++.. .+... .+++.+.
T Consensus 68 ~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~~~e~~-~~a~~----~~~~~~E 142 (190)
T cd04144 68 IREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALARR----LGCEFIE 142 (190)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHH-HHHHH----CCCEEEE
T ss_conf 236765899972797789999999999999985337999528951455350330578999999-99998----0998999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34533348589999999999984
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
+||++|.||+++|..+.+...+.
T Consensus 143 ~SAk~~~nV~e~F~~l~~~i~~~ 165 (190)
T cd04144 143 ASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 73588809799999999999987
No 294
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=1.1e-14 Score=117.77 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=120.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC------------------------------CCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 443038864035642567887652012------------------------------11000245665420231142034
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYN------------------------------RLLTGSQSGITRDSVSISWNWKN 250 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~------------------------------r~ivs~~~GtTrD~i~~~~~~~~ 250 (470)
.+.++|+++|..++|||||+-+|+-+. +..-...-|.|.|.-...|+..+
T Consensus 5 K~~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~ 84 (426)
T PRK12317 5 KPHLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 84 (426)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 97849999952287688887689877299448999999989986487752143212578668755827883169995498
Q ss_pred EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCC--CCHHHHHHHHHHHHCCCCC-CCEEEECCCCC
Q ss_conf 06999817110444443000111000121001201205998455321--2202122320000003576-65589442233
Q gi|255764471|r 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA-VVLALNKWDMV 327 (470)
Q Consensus 251 ~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~--~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli 327 (470)
+.|.|+|+|| +|.| +.........+|++++|+||.+ |+..|++..+.++.-.|.+ +|+++||+|++
T Consensus 85 ~~~~iiD~PG----------H~~f-i~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v 153 (426)
T PRK12317 85 YYFTIIDCPG----------HRDF-VKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 153 (426)
T ss_pred CEEEEEECCC----------CHHH-HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 1699987896----------3667-8778745346772799996365667647789999999980998399999533356
Q ss_pred CCHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCCCCCHHHH
Q ss_conf 54155566654201333200----48831112345333485899
Q gi|255764471|r 328 SDKLNLLQDLRTKAIKNLPQ----IGDIYINTISGRTGEGLDDL 367 (470)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~iSA~~g~gi~~l 367 (470)
+.+.+.++++...+...+.. ...++++++||.+|.|+.+.
T Consensus 154 ~~~~~~~~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~ 197 (426)
T PRK12317 154 NYDEKRYNEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 197 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 77889999999999999997098803470887532346564116
No 295
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.61 E-value=3.5e-15 Score=121.27 Aligned_cols=145 Identities=23% Similarity=0.260 Sum_probs=94.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|.++|..|||||||++++...+. +...|.+ ......+.+++..+.+-||||=.. +. .........|
T Consensus 1 Kil~lG~~~~GKTsll~~~~~~~~--~~~~pTi--g~~~~~i~~~~~~~~iwD~~G~e~-----~r----~~~~~y~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--VTTIPTI--GFNVETVTYKNLKFQVWDLGGQTS-----IR----PYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC--CCCCCCC--CCCEEEEEECCEEEEEEECCCCCC-----CC----HHHHHHCCCC
T ss_conf 999999999989999999970996--7757848--824699998988999996798624-----46----2788746678
Q ss_pred CEEEEEECCCCCCC--HHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHH----C-CCCCEEEHHHCCCC
Q ss_conf 98999975988776--23445553321---0233222205652230121--001245531----2-22201001110222
Q gi|255764471|r 84 HLILFLIDSKAGIT--PYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSL----D-FKEIVEISAEHDLG 151 (470)
Q Consensus 84 D~il~vvD~~~g~~--~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~l----g-~~~~i~iSA~~g~G 151 (470)
|.++||+|+.+.-. ..-.++...+. -.+.|+++++||+|..... ..+.+...+ + --.++++||++|.|
T Consensus 68 ~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 89999974578789999999999998346536981999997667765779999999985987416996899967878939
Q ss_pred CHHHHHHHHH
Q ss_conf 0147999999
Q gi|255764471|r 152 TSELHSVIFK 161 (470)
Q Consensus 152 i~~L~~~i~~ 161 (470)
+++.++++..
T Consensus 148 V~e~f~wL~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHC
T ss_conf 9999999856
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.61 E-value=3.9e-15 Score=120.90 Aligned_cols=156 Identities=25% Similarity=0.275 Sum_probs=113.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEE-----------EEC----CCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHH
Q ss_conf 08999718988788899998588501-----------025----898530223899999899899999658842076368
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMA-----------VVG----NHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~a-----------iv~----~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~ 67 (470)
--|||+-.---||.||...|+.+.-. --| ..-|.|-=..-..+.|+|..+.++||||. ..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGH-----AD 80 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGH-----AD 80 (603)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCC-----CC
T ss_conf 3068999844881028999987316544565201440376423443493898515246208838987658986-----77
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHH---H-HHHHCCC--
Q ss_conf 9999999999999877989999759887762344555332102332222056522301210--012---4-5531222--
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFY---E-IYSLDFK-- 139 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~---e-~~~lg~~-- 139 (470)
|..++ ++.+...|-+|+||||.+|+.|+.+++.+..-+.+.+.|+|+||+|.+.... ... | |.+||..
T Consensus 81 FGGEV----ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 81 FGGEV----ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred CCCHH----HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 66254----51143233489999755588873144489999749984899967789998878999999999998199745
Q ss_pred ----CCEEEHHHCCCC----------CHHHHHHHHHHHHHCC
Q ss_conf ----201001110222----------0147999999861012
Q gi|255764471|r 140 ----EIVEISAEHDLG----------TSELHSVIFKIFKQKY 167 (470)
Q Consensus 140 ----~~i~iSA~~g~G----------i~~L~~~i~~~~~~~~ 167 (470)
++++-||..|.- +.-|.+.|.++.|+..
T Consensus 157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 578707985414751015865555531689999997589998
No 297
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.61 E-value=6.3e-16 Score=126.26 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHCCCEEEECCCCC-CEEEE---------E-----------EEEEEECCEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 87888999985885010258985-30223---------8-----------999998998999996588420763689999
Q gi|255764471|r 13 VGKSTLFNRLVKKKMAVVGNHPG-ITRDR---------L-----------YGQAIINGVIFNIVDTAGIADGKNCSIAKQ 71 (470)
Q Consensus 13 vGKStL~N~l~~~~~aiv~~~~g-~Trd~---------~-----------~~~~~~~~~~~~liDT~G~~~~~~~~~~~~ 71 (470)
|--+||+-++=|+++ |+..|| .|++. + .-..++-| +.+|||||..-.+. |-++
T Consensus 561 vhnTTLLDkIRks~V--v~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPG--LLfIDTPGHeaFt~--LRkR 634 (1145)
T TIGR00491 561 VHNTTLLDKIRKSAV--VKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPG--LLFIDTPGHEAFTN--LRKR 634 (1145)
T ss_pred EECCCCCCCCCCCCE--EEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCE--EEEEECCCCHHHHC--CCCC
T ss_conf 851433100033401--32477884010066654668986513212114025786580--15860786234422--0100
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH----------------H--------
Q ss_conf 9999999998779899997598877623445553321023322220565223012----------------1--------
Q gi|255764471|r 72 MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA----------------Q-------- 127 (470)
Q Consensus 72 i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~----------------~-------- 127 (470)
.=.=||++++|||..+|..|+..|-.+.||..+.|+++++||+|.... +
T Consensus 635 -------GGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~ 707 (1145)
T TIGR00491 635 -------GGALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLD 707 (1145)
T ss_pred -------CCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf -------1036301101341026984034899999612898728950330558896454885166665411167886688
Q ss_pred ----HHHHH--HHHHCCCC--------------CEEEHHHCCCCCHHHHHHHHH
Q ss_conf ----00124--55312222--------------010011102220147999999
Q gi|255764471|r 128 ----RNFYE--IYSLDFKE--------------IVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 128 ----~~~~e--~~~lg~~~--------------~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
....+ +++.||.. ++||||.+|+||.||+-.+..
T Consensus 708 ~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~G 761 (1145)
T TIGR00491 708 KKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAG 761 (1145)
T ss_pred HHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 778988730221125887122552000011368988665678974899999988
No 298
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=1.5e-15 Score=123.78 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=97.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|.++||||||+.+++... -. .+..-|.-|.....+..++.. +.++|||| .|.|...+..
T Consensus 1 iKvvlvGd~~VGKTsli~r~~~~~-F~-~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG----------~e~~~~l~~~- 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAG----------QDEFDKLRPL- 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHHH-
T ss_conf 989999989978899999996199-99-9857835899999999999999999998998----------7344345676-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHH-------HHHHHHHCCCCC-CCCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555-------666542013332-0048
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNL-------LQDLRTKAIKNL-PQIG 349 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~-------~~~~~~~~~~~~-~~~~ 349 (470)
.++.||++++|.|.++.-+-++. +....+.+ .+.|+++|.||.||.++.... .+.+..+-.+.+ ..+.
T Consensus 68 ~~~~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 61378789999965987889999999999999609899889998870110013355444332575578999999999849
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 831112345333485899999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.++.+.+||++|.||+++|+.++-
T Consensus 148 ~~~y~EtSAkt~~nV~e~Fe~~i~ 171 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 968999686889697999999985
No 299
>KOG0462 consensus
Probab=99.61 E-value=2.3e-15 Score=122.45 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=121.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCC----------CCCC----CHHHHHHHHHCCCCEEEECC---EEEEEEECHHCCCCC
Q ss_conf 303886403564256788765201----------2110----00245665420231142034---069998171104444
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGY----------NRLL----TGSQSGITRDSVSISWNWKN---HPIEIFDTAGMRKPS 265 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~----------~r~i----vs~~~GtTrD~i~~~~~~~~---~~~~liDTaGirkk~ 265 (470)
.-+++|+-+...|||||..+|+.. ++.+ |-..-|.|..+-...+.|++ ....+|||||
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG----- 134 (650)
T KOG0462 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG----- 134 (650)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCC-----
T ss_conf 131379998427701689999998287788875566424544566528478751237999758732887505898-----
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 43000111000121001201205998455321220212232000000357665589442233541555666542013332
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~ 345 (470)
+++.+-| +.|++.+ ||-|++|+||.+|+..|+.....++.+.|..+|.|+||+|+-..+.+ ....++.+.|
T Consensus 135 HvDFs~E---VsRslaa---c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe---~V~~q~~~lF 205 (650)
T KOG0462 135 HVDFSGE---VSRSLAA---CDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPE---RVENQLFELF 205 (650)
T ss_pred CCCCCCE---EHEHHHH---CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH---HHHHHHHHHH
T ss_conf 5555410---0012653---57159999767681288999999999859748886531578988989---9999999986
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0048831112345333485899999999
Q gi|255764471|r 346 PQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 346 ~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
. +...+++++||++|.|+++++++|++
T Consensus 206 ~-~~~~~~i~vSAK~G~~v~~lL~AII~ 232 (650)
T KOG0462 206 D-IPPAEVIYVSAKTGLNVEELLEAIIR 232 (650)
T ss_pred C-CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 6-89612488870257568889999996
No 300
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.61 E-value=2e-15 Score=122.82 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=94.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEE--ECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 03886403564256788765201211000245665420231142--0340--6999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN--WKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~--~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
+||+++|-++||||||+.++++.+ -.-.-.|-...|.....+. .++. .+.++|||| -|.|...+
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~~-f~~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG----------~e~~~~l~- 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG----------QEEFDAIT- 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCC----------CCCCCCCH-
T ss_conf 989999999988999999998496-898768855625788789986799799999997899----------70134152-
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHHH-HHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 00120120599845532122021223-2000000--35766558944223354155566654201333200488311123
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDLR-IVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~~-i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
...++.||++++|.|.++.-+-+... ..+.+.+ ...|+++|.||+||.+++.-..++... +..-..++.+.+
T Consensus 69 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~-----~a~~~~~~~~E~ 143 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA-----LAKRLQLPLFRT 143 (162)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCHHHHHH-----HHHHCCCEEEEE
T ss_conf 456123031268840698899999999999999766996299984054441017789999999-----999869879998
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|+.+.+
T Consensus 144 SAk~~~nV~e~F~~la~ 160 (162)
T cd04106 144 SVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 68888298999999996
No 301
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.61 E-value=1.1e-14 Score=117.87 Aligned_cols=144 Identities=26% Similarity=0.233 Sum_probs=98.4
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97189887888999985885010258985302238999998998--9999965884207636899999999999998779
Q gi|255764471|r 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAINEAH 84 (470)
Q Consensus 7 ivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD 84 (470)
++|.+|||||||+|++++.+. .....+.++.+.....+...+. .+.+.||||..... . + ....+..+|
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~-~---~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF-VPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-----S-L---RRLYYRGAD 70 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH-----H-H---HHHHHHHCC
T ss_conf 929499688999999971988-87646871578999999999999999999858951156-----7-8---999975357
Q ss_pred EEEEEECCCCCCCHHHHH-----HHHHHHCCCCCCCCCHHHHCCCHHHHHHHH-----HHHHCCCCCEEEHHHCCCCCHH
Q ss_conf 899997598877623445-----553321023322220565223012100124-----5531222201001110222014
Q gi|255764471|r 85 LILFLIDSKAGITPYDHA-----ITSFLRKKNIPIIIVSNKMDTRIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSE 154 (470)
Q Consensus 85 ~il~vvD~~~g~~~~D~~-----i~~~lr~~~~~~ilv~NK~D~~~~~~~~~e-----~~~lg~~~~i~iSA~~g~Gi~~ 154 (470)
.+++|+|..+..+-.+.. +.......+.|+++|.||+|.........+ +....--..+.+||++|.|+++
T Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 99999865888889999999999999752589849999853561540668899999999987898699984788839999
Q ss_pred HHHHHH
Q ss_conf 799999
Q gi|255764471|r 155 LHSVIF 160 (470)
Q Consensus 155 L~~~i~ 160 (470)
|++.+.
T Consensus 151 l~~~i~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHH
T ss_conf 999985
No 302
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=3.2e-15 Score=121.49 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=96.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.++|+++|.++||||||+.++++.. -.-...|-.-.|.....++.+|.. +.++|||| .|.|....+.
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~-F~~~~~~Tig~d~~~k~i~v~~~~v~l~iwDtaG----------~e~~~~s~~~ 70 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAG----------QERFRKSMVQ 70 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHHHH
T ss_conf 6999999979977999999995398-8998788630787899999999999999997788----------5305677789
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--21223200000----0357665589442233541555666542013332004883111
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
..++.||++++|.|.++.-+ ....++ ..+. ....|+++|.||.||.+.+.-..++. +.+..-..++.+
T Consensus 71 ~~~~~a~~~ilvydvt~~~Sf~~~~~w~-~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~-----~~~a~~~~~~~~ 144 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWI-EECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA-----QRFADAHSMPLF 144 (170)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHH-HHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHH-----HHHHHHCCCEEE
T ss_conf 9845773579995047476799999999-9999865888997999999821341178799999-----999997799999
Q ss_pred CCCCC---CCCCHHHHHHHHHHHH
Q ss_conf 23453---3348589999999999
Q gi|255764471|r 355 TISGR---TGEGLDDLMVSVLEIN 375 (470)
Q Consensus 355 ~iSA~---~g~gi~~l~~~i~~~~ 375 (470)
.+||| +|.||+++|..+.+-.
T Consensus 145 E~SAK~~~~~~nV~~~F~~la~~i 168 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 988899851708899999999996
No 303
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=1e-14 Score=118.16 Aligned_cols=156 Identities=26% Similarity=0.296 Sum_probs=122.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCC----------H----------------------HHHHHHHHCCCCEEEE
Q ss_conf 4430388640356425678876520121100----------0----------------------2456654202311420
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLT----------G----------------------SQSGITRDSVSISWNW 248 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~iv----------s----------------------~~~GtTrD~i~~~~~~ 248 (470)
.+-+++.++|....|||||+-+|+-.-.++- | ..-|.|.|.-+..|+.
T Consensus 5 k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t 84 (613)
T PRK05506 5 KTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFST 84 (613)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 76258999936679788898899998199678999999999998189888603544214888898559716856778843
Q ss_pred CCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEECCCCC
Q ss_conf 340699981711044444300011100012100120120599845532122021223200000035-7665589442233
Q gi|255764471|r 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKWDMV 327 (470)
Q Consensus 249 ~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~-k~~iiv~NK~Dli 327 (470)
.++.|.++|||| ++.|.-+..- ....||++++|+||++|+.+|+++.+..+.-.| +.+|+++|||||+
T Consensus 85 ~~r~~~i~DaPG----------H~~y~rNMit-gAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV 153 (613)
T PRK05506 85 PKRKFIVADTPG----------HEQYTRNMAT-GASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLV 153 (613)
T ss_pred CCEEEEEECCCC----------HHHHHHHHHH-HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 870599942896----------7989989998-78653879999988879515518999999872987599998520124
Q ss_pred CCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCHHHH
Q ss_conf 541555666542013332004--8831112345333485899
Q gi|255764471|r 328 SDKLNLLQDLRTKAIKNLPQI--GDIYINTISGRTGEGLDDL 367 (470)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~~iSA~~g~gi~~l 367 (470)
+.+...++++..++...+..+ ..+.++||||++|.||-.-
T Consensus 154 ~y~~~~f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~~ 195 (613)
T PRK05506 154 DYDQEVFDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVTR 195 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEC
T ss_conf 781999999999999999657998875996735748747678
No 304
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60 E-value=2.7e-15 Score=121.98 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=93.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 038864035642567887652012110002456654--202311420340--6999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
++|+++|.++||||||++++++.+= . +..-.|. |.-...+..++. .+.++|||| .|.|...+
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f-~--~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaG----------qe~~~~l~- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-E--KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAG----------QEKFGGLR- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-C--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCC----------CHHHHHHH-
T ss_conf 9899999999888999999983999-9--98687325567999999999799999997578----------71566687-
Q ss_pred CEEEECCEEEEEECCCCCCCH--HHHHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001201205998455321220--21223200000--03576655894422335415556665420133320048831112
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFE--KQDLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~--~qd~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
....+.||++++|.|.++.-+ .-..++ +.+. ..+.|+++|.||+||.+.... ++..+ +..-.+++.+.
T Consensus 67 ~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~-~~i~~~~~~~piilVgNK~Dl~~~~~~--~~~~~-----~~~~~~~~~~E 138 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWH-RDLVRVCGNIPIVLCGNKVDIKDRKVK--AKQIT-----FHRKKNLQYYE 138 (166)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCCCC--HHHHH-----HHHHCCCEEEE
T ss_conf 88740065799843789888999999999-999986899989999986217503667--99999-----99978998999
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 3453334858999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~ 374 (470)
+||++|.||+++|..+.+-
T Consensus 139 tSAk~~~nV~e~F~~la~~ 157 (166)
T cd00877 139 ISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCCCCCHHHHHHHHHHH
T ss_conf 8458990989999999999
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=99.60 E-value=4.8e-16 Score=127.07 Aligned_cols=88 Identities=30% Similarity=0.394 Sum_probs=71.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCCCH
Q ss_conf 08999718988788899998588501025898530223899999899-----------------8999996588420763
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-----------------VIFNIVDTAGIADGKN 65 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 65 (470)
-+|.|||.||||||||||+||... +-++++|.+|-|...|.+..-+ .++.+||.||+..+.+
T Consensus 23 m~iGivGlPNvGKSTlFnAlT~~~-v~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vDIAGLV~GAs 101 (392)
T PTZ00258 23 LKMGIVGLPNVGKSTTFNALSKQQ-VPAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVDIAGLVKGAS 101 (392)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
T ss_conf 556786699997899999987799-7424899888778327996784568899875187761014689997345578730
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 6899999999999998779899997598
Q gi|255764471|r 66 CSIAKQMNDQTELAINEAHLILFLIDSK 93 (470)
Q Consensus 66 ~~~~~~i~~~~~~ai~~aD~il~vvD~~ 93 (470)
.+ +.+-.|.+..+.++|++++|||+.
T Consensus 102 ~G--~GLGNkFL~~iR~~DaiihVVR~F 127 (392)
T PTZ00258 102 KG--EGLGNAFLSHIRACDGIYHVVRAF 127 (392)
T ss_pred CC--CCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 26--885189999988400799999872
No 306
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.60 E-value=1.8e-15 Score=123.24 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=91.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 038864035642567887652012110002456654202311420340--699981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|.++||||||++++++.+-. -.-.|-...|.....+..+|. .+.++||||- |.|... +..
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~~f~-~~~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~----------~~~~~~-~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ----------ERFRTL-TSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCEEEEEEECCEEEEEEEEECCCC----------CCCCCC-HHH
T ss_conf 98999997995799999999639999-984873133423899999999999999999998----------423534-224
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-3200000----035766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||++++|+|.+..-+-+.. +....+. ..+.|+++|.||.|+-+ +.-..++..+ +..-.+++.+.+
T Consensus 69 ~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~-~~v~~~~~~~-----~a~~~~~~y~e~ 142 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLK-----FARKHNMLFIET 142 (161)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CCCCHHHHHH-----HHHHCCCEEEEE
T ss_conf 4132153489976782656999999999999856888873788731044000-6899999999-----999869999997
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|+.+.+
T Consensus 143 Sak~g~nV~~~F~~l~~ 159 (161)
T cd01863 143 SAKTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 15868159999999997
No 307
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=2.8e-15 Score=121.88 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=95.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|+++|-++||||||+.++++.+ -. .+..-|.-|.....+..+|.. +.++|||| .|.|...+. .
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~~-F~-~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG----------~e~~~~l~~-~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG----------QEDYNRLRP-L 68 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHH-H
T ss_conf 799998999977999999996598-99-9867853589999999999899999997999----------765424689-8
Q ss_pred EEECCEEEEEECCCCCCCHHH---HHHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHH-----HHHHHCCCCCCCCCCC
Q ss_conf 120120599845532122021---223200000--035766558944223354155566-----6542013332004883
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQ---DLRIVDSVF--NTGHAVVLALNKWDMVSDKLNLLQ-----DLRTKAIKNLPQIGDI 351 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~q---d~~i~~~i~--~~~k~~iiv~NK~Dli~~~~~~~~-----~~~~~~~~~~~~~~~~ 351 (470)
..+.||++++|+|.+..-+-+ +.++ ..+. ..+.|+|+|.||.||.+++....+ .+.......+..--++
T Consensus 69 ~y~~a~~~ilvydi~~~~Sf~~~~~~w~-~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~ 147 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWV-PELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 7267875799997898789999999999-999986849988999986320212223333024677779999999997799
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -111234533348589999999999
Q gi|255764471|r 352 -YINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 352 -~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
..+.+||++|.||+++|+.+.+..
T Consensus 148 ~~y~EtSAk~~~nV~e~F~~~~~~i 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 7899947898809899999999998
No 308
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.60 E-value=3e-15 Score=121.67 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=82.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|-++||||||+.+++..+-. -.-.|-...|.....+.++|.. +.++||+|- +.|...+ ..
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f~-~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~----------~~~~~~~-~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEVR-NE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHHH-HH
T ss_conf 98999995995689999999639999-985897655777999999999999999989997----------6478999-99
Q ss_pred EEECCEEEEEECCCCCCCHHHH--HHHHHH---HH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1201205998455321220212--232000---00----03576655894422335415556665420133320048831
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD--LRIVDS---VF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd--~~i~~~---i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
.++.||++++|.|+++.-+-+. .++-.. +. ....|+++|.||+|+...+.-..++. +.+..-.+++
T Consensus 69 ~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~-----~~~a~~~~~~ 143 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG-----RLWAESKGFK 143 (168)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHH-----HHHHHHCCCE
T ss_conf 98747788999508974448999999999999824534566862999854034442578899999-----9999986998
Q ss_pred CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112345333485899999999
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.+.+||++|.||+++|+.+.+
T Consensus 144 ~~E~Sak~g~~V~e~F~~l~~ 164 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999885779088999999999
No 309
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.2e-15 Score=122.55 Aligned_cols=205 Identities=23% Similarity=0.172 Sum_probs=122.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEE------------EC-C-----EEEEEEECHHCCCCC
Q ss_conf 03886403564256788765201211000245665420231142------------03-4-----069998171104444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN------------WK-N-----HPIEIFDTAGMRKPS 265 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~------------~~-~-----~~~~liDTaGirkk~ 265 (470)
++++|||.||||||||+|+|+... +-+.+.|.||.|+-...+. ++ . -++.|+|.|||-+..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCC
T ss_conf 426774189885888999997489-6424898542657732796473678999875389974776104899824537885
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCC------------CCHHH-------------------------------
Q ss_conf 43000111000121001201205998455321------------22021-------------------------------
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI------------PFEKQ------------------------------- 302 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~------------~~~~q------------------------------- 302 (470)
+..+++- ++=+..|+++|.+++|+|+++ |+.+-
T Consensus 82 s~GeGLG----NkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~k~~k~a~~~~~ 157 (372)
T COG0012 82 SKGEGLG----NKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKK 157 (372)
T ss_pred CCCCCCC----HHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4688864----787876551485899998538986547878839277799999999999999999999999988750662
Q ss_pred -HH-----------------------------------H-HHHHHHCCCCCCCEEEECCCCCCCHH-HHHHHHHHHCCCC
Q ss_conf -22-----------------------------------3-20000003576655894422335415-5566654201333
Q gi|255764471|r 303 -DL-----------------------------------R-IVDSVFNTGHAVVLALNKWDMVSDKL-NLLQDLRTKAIKN 344 (470)
Q Consensus 303 -d~-----------------------------------~-i~~~i~~~~k~~iiv~NK~Dli~~~~-~~~~~~~~~~~~~ 344 (470)
|+ . +..+.+...||++++.||.|...... +..+.+++....
T Consensus 158 ~~k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~- 236 (372)
T COG0012 158 LDKELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAK- 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH-
T ss_conf 3799999999888789999820022027744589999999887656404986999977765431116999999997665-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---CCCCCEEEEEEEEECCCC
Q ss_conf 20048831112345333485899999--9999998414689789899999999828878---778712069999862879
Q gi|255764471|r 345 LPQIGDIYINTISGRTGEGLDDLMVS--VLEINKLWKTRITTSYLNSWLQKTQLQNPPP---TIFNRYNRLKYITQIQSS 419 (470)
Q Consensus 345 ~~~~~~~~i~~iSA~~g~gi~~l~~~--i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp---~~~g~~~ki~y~~Q~~~~ 419 (470)
.+.+++++||.--.-+..+-+. -.+-..... +..+.||+.++.....-.-- ..+-+.++.+=+.+..+.
T Consensus 237 ----~~~~vv~~sA~~E~eL~~l~~~~e~~~F~~~~g--~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~ka 310 (372)
T COG0012 237 ----ENAEVVPVSAAIELELRELADAEEKGEFLIELG--QKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKA 310 (372)
T ss_pred ----CCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHCC--CCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCCCC
T ss_conf ----089599941899999985746322356877438--44667889999874655577897326875999984368853
Q ss_pred C
Q ss_conf 7
Q gi|255764471|r 420 P 420 (470)
Q Consensus 420 P 420 (470)
|
T Consensus 311 p 311 (372)
T COG0012 311 P 311 (372)
T ss_pred C
T ss_conf 4
No 310
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.60 E-value=2.7e-15 Score=122.06 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=97.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|-++||||||+.++++.. -. .+..-|.-|.....+..+|.. +.++|||| .|.|...+. .
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~-f~-~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG----------~e~~~~~~~-~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA-FP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG----------QEDYDRLRP-L 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CC-CCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CCCCHHHHH-H
T ss_conf 989999989985999999996298-99-8868857520227999999999999997976----------403155659-9
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHH-------HHHHHHHCCCCCC-CCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555-------6665420133320-048
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNL-------LQDLRTKAIKNLP-QIG 349 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~-------~~~~~~~~~~~~~-~~~ 349 (470)
.++.||++++|.|.++.-+-+.. ..+..+.+ .+.|+++|.||.||.++.... .+.+..+-.+.+. .+.
T Consensus 68 ~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf 85578767898437977889999999999999868499889996852300443455453004576639999999999779
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8311123453334858999999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
....+.+||++|.||+++|+.+++.
T Consensus 148 ~~~f~E~SAkt~~nV~e~F~~~i~~ 172 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9899990548794989999999999
No 311
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=2.3e-14 Score=115.73 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=90.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+..+|.|+|-.|+||||++++|.+.+...+.++.|.+. ..+++++..+.++|..|-.+-.... -.+
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~----e~~~~~~~~~~~wDlgG~~~~R~lW--~~Y------- 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS----EELAIGNIKFTTFDLGGHQQARRLW--KDY------- 81 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCCHHHHHHH--HHH-------
T ss_conf 661479999658898899999980699753057878864----8999999999999889877788999--988-------
Q ss_pred EEEECCEEEEEECCCCCC--CHHHHHH---HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC-C------CCCC
Q ss_conf 012012059984553212--2021223---20000003576655894422335415556665420133-3------2004
Q gi|255764471|r 281 QSVRTCETTIVLLDATIP--FEKQDLR---IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-N------LPQI 348 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~--~~~qd~~---i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~-~------~~~~ 348 (470)
...||.++||+|+++. +.+--.. ++..-.-.++|++|+.||.|+-..-. ..++.+.+.- . ....
T Consensus 82 --y~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~--~~ei~~~L~L~~~~~~~~~~~~ 157 (184)
T smart00178 82 --FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS--EDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred --HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHHHHHHHCCHHHHCCCCCCCC
T ss_conf --216758999972686889999999999986467655970999997567778999--9999988195123265576677
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88311123453334858999999
Q gi|255764471|r 349 GDIYINTISGRTGEGLDDLMVSV 371 (470)
Q Consensus 349 ~~~~i~~iSA~~g~gi~~l~~~i 371 (470)
....|.++||.+|+|+.+-++=+
T Consensus 158 r~~~i~~~SA~tG~Gl~egl~WL 180 (184)
T smart00178 158 RPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred CCEEEEEEECCCCCCHHHHHHHH
T ss_conf 63199973560797869999999
No 312
>PRK13351 elongation factor G; Reviewed
Probab=99.60 E-value=4.3e-14 Score=113.88 Aligned_cols=114 Identities=29% Similarity=0.451 Sum_probs=89.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCC--CHH---------------HHHHHHHCCCCEEEECCEEEEEEECHHCCCCCC
Q ss_conf 038864035642567887652012110--002---------------456654202311420340699981711044444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLL--TGS---------------QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~i--vs~---------------~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~ 266 (470)
.+|||+|+..+||+||.-+|+-....+ .++ .-|+|.-+--..+.|+++.+.|||||| +
T Consensus 9 RNi~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPG-----H 83 (687)
T PRK13351 9 RNIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPG-----H 83 (687)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC-----C
T ss_conf 08999917998989999999997499875871547874478829999749877621599988998999980979-----7
Q ss_pred CCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 30001110001210012012059984553212202122320000003576655894422335
Q gi|255764471|r 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 (470)
Q Consensus 267 ~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~ 328 (470)
++..-| ..+|++-+|.+++|+||.+|+..|++.+.+++.+++.|.|+++||+|...
T Consensus 84 vDF~~E------v~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~ 139 (687)
T PRK13351 84 IDFTGE------VERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVG 139 (687)
T ss_pred CCHHHH------HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 430999------99999987868999978999868899999999987998599997977899
No 313
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.60 E-value=5.2e-15 Score=120.07 Aligned_cols=87 Identities=32% Similarity=0.412 Sum_probs=70.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCCCHHH
Q ss_conf 999718988788899998588501025898530223899999899-----------------899999658842076368
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-----------------VIFNIVDTAGIADGKNCS 67 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-----------------~~~~liDT~G~~~~~~~~ 67 (470)
|+|||-||||||||||+||+.+. -..++|.+|-|...|.+..-+ ..+.++|.||+..+...+
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 95647899988999999977998-74589977726805899677565889987317765123578998546556775236
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 999999999999987798999975988
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKA 94 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~ 94 (470)
+..-.+.+..+.++|++++||.+-+
T Consensus 80 --eGLGN~FL~~Ir~vDai~hVVR~F~ 104 (274)
T cd01900 80 --EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred --CCCCHHHHHHHHHCCEEEEEHHHCC
T ss_conf --7650899999873463465321115
No 314
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.60 E-value=5.1e-15 Score=120.16 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=96.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-+|||||||+++|...+..-+.++.| .....+.+.+.++.+-||||-.... .........
T Consensus 10 ~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gqe~~r---------~l~~~y~~~ 76 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQDKIR---------PLWRHYYTG 76 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCCCCCC---------CHHHHHCCC
T ss_conf 899999999999899999996699876026267----0079999898899999899997466---------065764378
Q ss_pred CCEEEEEECCCCCCC--HHHHHHHHHHHC---CCCCCCCCHHHHCCCHHH--HHHHHHHHHC-C----CCCEEEHHHCCC
Q ss_conf 798999975988776--234455533210---233222205652230121--0012455312-2----220100111022
Q gi|255764471|r 83 AHLILFLIDSKAGIT--PYDHAITSFLRK---KNIPIIIVSNKMDTRIAQ--RNFYEIYSLD-F----KEIVEISAEHDL 150 (470)
Q Consensus 83 aD~il~vvD~~~g~~--~~D~~i~~~lr~---~~~~~ilv~NK~D~~~~~--~~~~e~~~lg-~----~~~i~iSA~~g~ 150 (470)
||.++||+|+.+.-. ..-..+...+.. .+.|+++++||+|.+... ..+.+...+. + -.++++||++|.
T Consensus 77 ~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~ 156 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCC
T ss_conf 86689998377678999999999999714522798699999756677788999999997876551798099980687896
Q ss_pred CCHHHHHHHHH
Q ss_conf 20147999999
Q gi|255764471|r 151 GTSELHSVIFK 161 (470)
Q Consensus 151 Gi~~L~~~i~~ 161 (470)
|+.|-++++..
T Consensus 157 Gv~e~f~WL~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred CHHHHHHHHHC
T ss_conf 97999999865
No 315
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=6.4e-15 Score=119.48 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=93.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCCCCEEEEC-CE--EEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 3038864035642567887652012110-0024566542023114203-40--699981711044444300011100012
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLL-TGSQSGITRDSVSISWNWK-NH--PIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i-vs~~~GtTrD~i~~~~~~~-~~--~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
.++|.++|-+.||||+|+++++...-.- ..++-| .|.....++.. |. .+.+|||||- |.|...
T Consensus 2 ~fKivllGd~~VGKTsL~~rf~~~~F~~~~~~Tig--~df~~k~i~i~dg~~v~l~IwDTaGq----------e~~~si- 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--VDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSI- 68 (211)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCCCEEEEEEEECCCC----------CCCCCC-
T ss_conf 79999999999619999999981999998687201--68899899977995999999979886----------345644-
Q ss_pred CCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 10012012059984553212--20212232000000----3576655894422335415556665420133320048831
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
+....+.|+.+++|.|.+.. +.....++ +.+.+ ...++++|.||+||...+.-..++.+ .+..-.+++
T Consensus 69 ~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~-~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~-----~~A~~~~~~ 142 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWL-EEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-----KLAKDLGMK 142 (211)
T ss_pred HHHHHHHCCEEEEEECCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHH-----HHHHHHCCE
T ss_conf 287742124468971477779999999999-99999749888538988742312856788999999-----999983997
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-HHHH
Q ss_conf 112345333485899999999-9998
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLE-INKL 377 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~-~~~~ 377 (470)
.+.+||++|.||+++|..+.+ ++++
T Consensus 143 f~EtSAK~g~nV~e~F~~la~~i~~~ 168 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99975999819899999999999999
No 316
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.59 E-value=2e-15 Score=122.94 Aligned_cols=56 Identities=48% Similarity=0.690 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
.|++||.||||||||+|+|.|++.+.|++.||+||... .+.++. .+.|+||||+..
T Consensus 120 ~v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~~q--~i~l~~-~i~llDtPGvl~ 175 (276)
T TIGR03596 120 RAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLSD-GLELLDTPGILW 175 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEE--EEEECC-CEEEECCCCCCC
T ss_conf 89997279875899999873672587779654210258--999579-779966887457
No 317
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.59 E-value=6.8e-15 Score=119.29 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=95.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302-2389999989989999965884207636899999999999998
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITR-DRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Tr-d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
.+|.++|-+|||||||++++....-.-+.++.|..- ...+......+..+.+-||||=... . ........
T Consensus 4 ~kIvilG~~~~GKTsil~r~~~~~f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~-----r----~l~~~Y~r 74 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-----R----PLWKSYTR 74 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCC-----C----EEHHHHHC
T ss_conf 99999999999889999999649867768703557899999616786679999978987345-----1----00876746
Q ss_pred HCCEEEEEECCCCCCCHHH--HHHHHHHH---CCCCCCCCCHHHHCCCHHHH--HHH---HHHHHCCC---CCEEEHHHC
Q ss_conf 7798999975988776234--45553321---02332222056522301210--012---45531222---201001110
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD--HAITSFLR---KKNIPIIIVSNKMDTRIAQR--NFY---EIYSLDFK---EIVEISAEH 148 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D--~~i~~~lr---~~~~~~ilv~NK~D~~~~~~--~~~---e~~~lg~~---~~i~iSA~~ 148 (470)
.||.++||+|+.+.-.-.+ ..+.+.++ ..+.|++++.||+|...... ... .+.++... .+.++||++
T Consensus 75 ~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~tSA~t 154 (183)
T cd04152 75 CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 78678999967768899999999999973212379629999866777668788999999719998666998999727997
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 222014799999986101
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~ 166 (470)
|.|+.+.++++.+.+-..
T Consensus 155 G~gI~e~f~~L~~~i~~r 172 (183)
T cd04152 155 GEGLQEGLEKLYEMILKR 172 (183)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 969899999999999999
No 318
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=4.3e-14 Score=113.91 Aligned_cols=151 Identities=15% Similarity=0.219 Sum_probs=102.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989--9999658842076368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++++.++|.++||||||++++++.+-....-.|.+..+.....++.+|.+ +.|-||+|-... ..+ ....
T Consensus 4 vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~------~~l---~~~~ 74 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA------ILL---NDAE 74 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHH------HHH---HHHH
T ss_conf 8999999999988999999996499986665675466189999998999999999855653235------566---5887
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHC----CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCCC
Q ss_conf 987798999975988776234455533210----23322220565223012100----12455-3122220100111022
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRK----KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHDL 150 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~----~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g~ 150 (470)
+..||++++|.|..+.- +. ..+.+++++ ...|+++|.||+|+...... ..+|. +.|+..++.+||++|.
T Consensus 75 ~~~ad~~ilVyDit~~~-SF-~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~ 152 (169)
T cd01892 75 LAACDVACLVYDSSDPK-SF-SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred HCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 54698899999799878-99-99999999700568981899988655420375467769999998399966699832798
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++...|....
T Consensus 153 nv~~~F~~la~~a 165 (169)
T cd01892 153 SSNELFTKLATAA 165 (169)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999997
No 319
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.59 E-value=2.8e-14 Score=115.13 Aligned_cols=150 Identities=21% Similarity=0.320 Sum_probs=101.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEE--EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899--9996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIF--NIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~--~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||++|++...- ..++..|..|.....+.+++..+ .+.||+|-.. + ..+ ....+
T Consensus 1 fKiv~vGd~~vGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~-----~-~~~---~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE-----F-SAM---RDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----H-HHH---HHHHC
T ss_conf 9899999999789999999972979--98778813678999999999999999998999710-----3-567---77753
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHH-H---CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-555332-1---023322220565223012100----1245-53122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFL-R---KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~l-r---~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
..||++++|.|..+.-+-... ...+.+ + ..+.|+++|.||+|+...... ..++ .++|. +.+.+||++|.
T Consensus 70 ~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g~ 148 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 79877999830798899999999999999861888886687775346301178999999999998399-89998589881
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 20147999999861
Q gi|255764471|r 151 GTSELHSVIFKIFK 164 (470)
Q Consensus 151 Gi~~L~~~i~~~~~ 164 (470)
|++++.+.+.+.+.
T Consensus 149 nV~~~F~~l~~~i~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 78999999999996
No 320
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3.5e-15 Score=121.28 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=128.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 44430388640356425678876520121100024566542023114203406999817110444443000111000121
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
..+|+.+-|+|++.+|||||+|+|.+.+.+-|++.+-+|+..-.....+++....|+||||+-....-+..+.. .+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~-~~--- 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ-LY--- 111 (296)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH-HH---
T ss_conf 36861589743777768899999970267342104668870156774126652488437885532022189999-99---
Q ss_pred CEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCCH-----------HHHHHHHHHH---CCC
Q ss_conf 0012012059984553212202122320000003--57665589442233541-----------5556665420---133
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT--GHAVVLALNKWDMVSDK-----------LNLLQDLRTK---AIK 343 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~--~k~~iiv~NK~Dli~~~-----------~~~~~~~~~~---~~~ 343 (470)
..-+.+.|++++++|+.+..-.-|...++.+.-. ++++++++|..|....- ....+.+.+. +.+
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98863224799961477700147799999999860576069997366543655430002599987899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3200488311123453334858999999999998414689789899999999
Q gi|255764471|r 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 (470)
Q Consensus 344 ~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~ 395 (470)
.+. .--||+++|+..+.|++.|..+++.+.-...+..-.+++-+-++...
T Consensus 192 ~~q--~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~~~~ 241 (296)
T COG3596 192 LFQ--EVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELRTQS 241 (296)
T ss_pred HHH--HCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 876--31774775254676689999999986731002402433016877777
No 321
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=99.59 E-value=1.7e-15 Score=123.33 Aligned_cols=138 Identities=23% Similarity=0.255 Sum_probs=95.3
Q ss_pred HHHHCCEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHHHHHCCCCCEEEHHHCCCCC
Q ss_conf 99877989999759887762---34455533210233222205652230121001---2455312222010011102220
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITP---YDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEIYSLDFKEIVEISAEHDLGT 152 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~---~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~~~lg~~~~i~iSA~~g~Gi 152 (470)
++...|.+++|+-..++... .|+.++. ....+.+.++|+||+|+...++.. ..+..+|+ +++++|+.+|.|+
T Consensus 85 ~VANvDq~liV~s~~~P~~~~~~LDRfLv~-ae~~~i~~vivlnK~DL~~~~e~~~~~~~~~~~GY-~~i~iS~~~~~gl 162 (351)
T PRK12289 85 PIANVDQILLVFALAEPPLDPWQLSRFLVK-AESTGLEIQLCLNKADLVSPTQQQQWQDRLAQWGY-QPLFISVEQGIGL 162 (351)
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCH
T ss_conf 756703599999657899887799999999-99879978999865774998999999999997798-2899967899689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 14799999986101234511221000011111122211123343323444303886403564256788765201211000
Q gi|255764471|r 153 SELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 (470)
Q Consensus 153 ~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs 232 (470)
++|.+.+... ..+++|.+.||||||+|+|+......|+
T Consensus 163 ~~L~~~L~~k------------------------------------------~tv~~G~SGVGKSSLIN~L~p~~~l~Tg 200 (351)
T PRK12289 163 EALLKQLRNK------------------------------------------ITVVAGPSGVGKSSLINRLIPDVELRVG 200 (351)
T ss_pred HHHHHHHCCC------------------------------------------EEEEECCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999987598------------------------------------------6999817988788988763741234566
Q ss_pred HHH-------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf 245-------6654202311420340699981711044
Q gi|255764471|r 233 SQS-------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 233 ~~~-------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
++. .|||.+ ..+...+. =.++||||++.
T Consensus 201 eVS~k~~rGrHTTr~~--eL~~L~~G-g~iiDTPGf~~ 235 (351)
T PRK12289 201 EVSGKLQRGRHTTRHV--ELFELPNG-GLLADTPGFNQ 235 (351)
T ss_pred HHCCCCCCCCCCCCEE--EEEECCCC-CEEEECCCCCC
T ss_conf 5406489987835516--89994899-58997979887
No 322
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.59 E-value=4.7e-15 Score=120.40 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=87.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.||+++|.++||||||++++++.+=. -.-.|-...|.....+.+++.+ +.++||||- |.|...+ ..
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f~-~~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~----------e~~~~~~-~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRSLI-PS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHHH-HH
T ss_conf 97999997997899999999319999-984897567889999999999999999979985----------3157888-98
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-32000000---357665589442233541555666542013332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iS 357 (470)
.++.+|++++|+|.+..-+-+.. .....+.. ...|+++|.||+||.+++.-..++.... ..-.+++.+.+|
T Consensus 69 ~~~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~~~e~~~~-----a~~~~~~y~E~S 143 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK-----AKELNAMFIETS 143 (161)
T ss_pred HHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHH-----HHHCCCEEEEEC
T ss_conf 866525899998479989999999999999986578984999610211022177899999999-----998499899983
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 5333485899999999
Q gi|255764471|r 358 GRTGEGLDDLMVSVLE 373 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~ 373 (470)
|++|.||+++|+.+.+
T Consensus 144 ak~~~nV~e~F~~la~ 159 (161)
T cd01861 144 AKAGHNVKELFRKIAS 159 (161)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 4778088999999997
No 323
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=99.58 E-value=2.7e-15 Score=121.97 Aligned_cols=56 Identities=45% Similarity=0.665 Sum_probs=48.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
+|++||.||||||||+|+|.|++.+.|++.||+||... .+.+++ .+.|+||||+..
T Consensus 123 ~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q--~v~l~~-~i~L~DtPGvl~ 178 (282)
T PRK09563 123 RAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQQ--WIKLGK-GLELLDTPGILW 178 (282)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE--EEEECC-CEEEECCCCCCC
T ss_conf 89997069776799999874770587679654100258--999579-889966887457
No 324
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=8.4e-15 Score=118.69 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=98.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|.++|-++||||||++++++..= --.-.| |.-|.....+..++.. +.+||||| .|.|...+.+
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~~F-~~~y~p-Ti~~~~~~~~~v~~~~v~l~iwDTaG----------qe~~~~l~~~- 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVP-TVFENYTASFEIDEQRIELSLWDTSG----------SPYYDNVRPL- 68 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCCCCC-CEEEEEEEEEEECCEEEEEEEEECCC----------CHHHCCHHHH-
T ss_conf 0999999999778999999963999-998578-56888899999999999999996898----------7421103667-
Q ss_pred EEECCEEEEEECCCCCCCHHH---HHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHH-------HHHHCCCCC-CCC
Q ss_conf 120120599845532122021---2232000000--357665589442233541555666-------542013332-004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQ---DLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQD-------LRTKAIKNL-PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~q---d~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~-------~~~~~~~~~-~~~ 348 (470)
..+.||++++|.|.++.-+-+ +.|+ ..+.+ .+.|+++|.||.||.++.....+- +..+....+ ..+
T Consensus 69 ~y~~a~~~ilvydit~~~Sf~~v~~~W~-~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ 147 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWR-GEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 7346878999973798788999999999-999986879988999985436644455667764467776899999999974
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 88311123453334-8589999999999
Q gi|255764471|r 349 GDIYINTISGRTGE-GLDDLMVSVLEIN 375 (470)
Q Consensus 349 ~~~~i~~iSA~~g~-gi~~l~~~i~~~~ 375 (470)
.....+.+||+||+ ||+++|+.+.++.
T Consensus 148 ga~~y~EtSAktg~ngV~evF~~a~~~~ 175 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9989999784868739899999999998
No 325
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.58 E-value=2.6e-14 Score=115.37 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE---ECCCC---------------CCEEEEEEEEEEEC-----CEEEEEEECCCC
Q ss_conf 89997189887888999985885010---25898---------------53022389999989-----989999965884
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAV---VGNHP---------------GITRDRLYGQAIIN-----GVIFNIVDTAGI 60 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~ai---v~~~~---------------g~Trd~~~~~~~~~-----~~~~~liDT~G~ 60 (470)
-|||+|....|||||..+|+..-..+ ..... |.|-......+.|. .+.+.|+||||.
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH-----------
Q ss_conf 207636899999999999998779899997598877623445553321023322220565223012100-----------
Q gi|255764471|r 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN----------- 129 (470)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~----------- 129 (470)
. .|..++ ..++.-+|.+++||||.+|+.++.++++++..+.+.|+++|+||+|..-.+..
T Consensus 82 ~-----dF~~ev----~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~ 152 (213)
T cd04167 82 V-----NFMDEV----AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred H-----HHHHHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHH
T ss_conf 4-----179999----9888637767999987888757799999999986999899998823431440699899999899
Q ss_pred --HHHH----HHHC----------CCCCEEEHHHCCCC--------CHHHHHHHHHHHHH
Q ss_conf --1245----5312----------22201001110222--------01479999998610
Q gi|255764471|r 130 --FYEI----YSLD----------FKEIVEISAEHDLG--------TSELHSVIFKIFKQ 165 (470)
Q Consensus 130 --~~e~----~~lg----------~~~~i~iSA~~g~G--------i~~L~~~i~~~~~~ 165 (470)
+.+. ..+. .+++++.||++|.+ +-+|+++|.+.+|.
T Consensus 153 ~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~ip~ 212 (213)
T cd04167 153 HIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999997078735165688796999970005212362321168999999963889
No 326
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=3.7e-14 Score=114.36 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=99.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC-CEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985-302238999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG-ITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g-~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|.++||||||+.|++...- +...+.. +.-|.....+..+|. .+.+.||||-..... + +...
T Consensus 1 ~KIv~vGd~~VGKTsli~r~~~~~f-~~~~~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~--l-------~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS--V-------THAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--C-------HHHH
T ss_conf 9899999499879999999995978-9998677652477999999999999999997998633464--6-------4777
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---H---CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 9877989999759887762344555332---1---023322220565223012100----1245-531222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---R---KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r---~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+-.|+ + ..+.|+++|.||+|+...... ..+| .++|+ +.+.+||++
T Consensus 71 ~~~a~~~ilvydit~~~Sf--~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~-~f~EtSAkt 147 (191)
T cd04112 71 YRDAHALLLLYDITNKASF--DNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKT 147 (191)
T ss_pred HHCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 1177778999727988999--9999999999986667853898612465530267999999999998299-799985489
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 22201479999998610123
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYP 168 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~ 168 (470)
|.|++++.+.+...+.....
T Consensus 148 ~~nI~e~F~~i~~~i~~~~~ 167 (191)
T cd04112 148 GLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred CCCHHHHHHHHHHHHHHHCC
T ss_conf 80979999999999987422
No 327
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=8.3e-14 Score=111.99 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=99.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853-02238999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|-++||||||++|++...- ..++..| --|.....+.++|. .+.+.||+|-... ..+ ....
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~------~~l---~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF--SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF------RSL---NNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH------HHH---HHHH
T ss_conf 9799999999789999999951968--9986886540357999999999999999989997104------578---9998
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 9877989999759887762344555332---10---23322220565223012100----1245-531222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+-. .+-.|+ ++ ...|+++|.||+|+...... ..++ .++|+ ..+.+||++
T Consensus 70 ~~~a~~~ilvydit~~~Sf~--~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAkt 146 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQ 146 (188)
T ss_pred HCCCCEEEEEECCCCHHHHH--HHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 63786799980389878999--999999999987898662451001344766067999999999998699-899974788
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 2220147999999861012
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~ 167 (470)
|.|++++.+.+.+.+-+..
T Consensus 147 g~nV~e~F~~l~~~i~~~~ 165 (188)
T cd04125 147 SINVEEAFILLVKLIIKRL 165 (188)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9098999999999999987
No 328
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.58 E-value=2.6e-14 Score=115.40 Aligned_cols=158 Identities=28% Similarity=0.312 Sum_probs=122.5
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCC--------------------------C------HHHHHHHHHCCCCEE
Q ss_conf 34443038864035642567887652012110--------------------------0------024566542023114
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLL--------------------------T------GSQSGITRDSVSISW 246 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~i--------------------------v------s~~~GtTrD~i~~~~ 246 (470)
+..+-+++.++|....|||||+-+|+-.--++ + -..-|.|.|.-...|
T Consensus 23 ~~k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f 102 (475)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (475)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEE
T ss_conf 47985799999055797788889999981997889999999999982887772224442059988986697169567899
Q ss_pred EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEECCC
Q ss_conf 20340699981711044444300011100012100120120599845532122021223200000035-76655894422
Q gi|255764471|r 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKWD 325 (470)
Q Consensus 247 ~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~-k~~iiv~NK~D 325 (470)
+.+++.|.++|+|| ++.|.-+ .......||++++|+||++|+.+|.++.+.++.-.| +.+|+++||||
T Consensus 103 ~t~~r~~~i~DaPG----------H~~f~~N-MitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMD 171 (475)
T PRK05124 103 STEKRKFIIADTPG----------HEQYTRN-MATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (475)
T ss_pred ECCCEEEEEEECCC----------HHHHHHH-HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHH
T ss_conf 53876899973796----------3877888-988887678899999898894788899999998659985999985043
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCCCHHHH
Q ss_conf 33541555666542013332004---8831112345333485899
Q gi|255764471|r 326 MVSDKLNLLQDLRTKAIKNLPQI---GDIYINTISGRTGEGLDDL 367 (470)
Q Consensus 326 li~~~~~~~~~~~~~~~~~~~~~---~~~~i~~iSA~~g~gi~~l 367 (470)
+++.+...++++..++...+..+ ..++++||||++|.|+-+.
T Consensus 172 lV~~~~~~f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~~ 216 (475)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 135439999999999999999749988850775413457676215
No 329
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.58 E-value=1.1e-14 Score=117.98 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=97.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
.+|+++|.++||||||++++++.+- ..+..-|.-|.-...+..+|++ +.++|||| .|.|...+..
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~~~f--~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG----------~e~~~~~~~~- 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAG----------QEEYERLRPL- 68 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCCCC-
T ss_conf 1999999899768999999982989--99878866789899999999999999997888----------7034546041-
Q ss_pred EEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHH-----HHHHHHHCCCCCCC-CCCC
Q ss_conf 12012059984553212202122--32000000--357665589442233541555-----66654201333200-4883
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNL-----LQDLRTKAIKNLPQ-IGDI 351 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~-----~~~~~~~~~~~~~~-~~~~ 351 (470)
..+.||++++|+|.++.-+-+.. +.+..+.+ .+.|+|+|.||.||-++.... .+....+....+.. +...
T Consensus 69 ~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 23388589997026986679999999999999858799889998860011341121112231557899999999984997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11123453334858999999999998
Q gi|255764471|r 352 YINTISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 352 ~i~~iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
+.+.+||++|.||+++|+.+.+..-.
T Consensus 149 ~y~EtSAk~~~nV~e~F~~~~r~~l~ 174 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 89996889997989999999999975
No 330
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.58 E-value=9.7e-15 Score=118.27 Aligned_cols=146 Identities=22% Similarity=0.266 Sum_probs=99.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-.|+|||||+++|.+....-+.++.|- ....+.+++..+.+.|+||=.. +.. .-....++
T Consensus 20 ~kIlilGld~aGKTTil~~l~~~~~~~~~PT~Gf----n~e~i~~~~~~~~~wDvgG~~~-----~R~----lW~~Y~~~ 86 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHP----TSEELTIGNIKFKTFDLGGHEQ-----ARR----LWKDYFPE 86 (190)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCC----CEEEEEECCEEEEEEECCCCCC-----CCC----CHHHHHHC
T ss_conf 4899990699988999999807995315265587----4599998999999998999845-----554----38888431
Q ss_pred CCEEEEEECCCCCC--CHHHHHHHHHHH---CCCCCCCCCHHHHCCCHHHH--HHHHHHHHCCC----------------
Q ss_conf 79899997598877--623445553321---02332222056522301210--01245531222----------------
Q gi|255764471|r 83 AHLILFLIDSKAGI--TPYDHAITSFLR---KKNIPIIIVSNKMDTRIAQR--NFYEIYSLDFK---------------- 139 (470)
Q Consensus 83 aD~il~vvD~~~g~--~~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~~--~~~e~~~lg~~---------------- 139 (470)
+|.++||||+.+.- ...-.++.+.|. -.+.|+++++||.|.+..-. .+.+ .|++.
T Consensus 87 ~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~--~L~L~~~~~~~~~~~~~~~~r 164 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQ--ALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH--HCCCCCCCCCCCCCCCCCCCC
T ss_conf 137999997767789999999999998555006980899986667767989999998--839842015544334545776
Q ss_pred --CCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf --201001110222014799999986
Q gi|255764471|r 140 --EIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 140 --~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
.++++||.+|.|+.|=++++.+.+
T Consensus 165 ~~~i~~csA~tG~Gl~egl~WLs~~l 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 14999655067968289999998549
No 331
>PRK09601 translation-associated GTPase; Reviewed
Probab=99.58 E-value=1.1e-14 Score=117.91 Aligned_cols=89 Identities=27% Similarity=0.290 Sum_probs=70.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE-----------------EEEEEECHHCCCCCC
Q ss_conf 038864035642567887652012110002456654202311420340-----------------699981711044444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH-----------------PIEIFDTAGMRKPSR 266 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~-----------------~~~liDTaGirkk~~ 266 (470)
++++|+|.||||||||+|+|++.+ +-+.+.|.||.|+-...+...+. ++.|+|.||+-+..+
T Consensus 3 mkiGivGlPnvGKSTlFnalT~~~-~~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~gAs 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKGAS 81 (364)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 248887799998899999996799-8645899888788006885785458999876287650112589996577678753
Q ss_pred CCCHHHHHHCCCCCEEEECCEEEEEECCCCC
Q ss_conf 3000111000121001201205998455321
Q gi|255764471|r 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 (470)
Q Consensus 267 ~~~~~E~~s~~~t~~~i~~advvi~viDa~~ 297 (470)
..+++- ++-+..|+.+|.+++|++|.+
T Consensus 82 ~G~GLG----N~FL~~iR~~DaiihVVr~F~ 108 (364)
T PRK09601 82 KGEGLG----NKFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CCCCCH----HHHHHHHHHCCEEEEEEECCC
T ss_conf 467742----899998873475677500026
No 332
>KOG1490 consensus
Probab=99.58 E-value=4.9e-15 Score=120.28 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=109.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989999965884207636899999999999998
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
.++..|+|.|||||||+.|.++...+. |-++|.||+-...|++.+.-..+.++|||||-+.+... -.-+..|+..|+.
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd-rN~IEmqsITALA 245 (620)
T KOG1490 168 TRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED-RNIIEMQIITALA 245 (620)
T ss_pred CCEEEEECCCCCCCHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHH-HHHHHHHHHHHHH
T ss_conf 671798527887737643552015555-57766551012100203240234403884124760543-2179999999998
Q ss_pred HC-CEEEEEECCCC--CCCHHHH-HHHHHHHC--CCCCCCCCHHHHCCCHHHHHH-------HHHHHHCCCCCEEEHHHC
Q ss_conf 77-98999975988--7762344-55533210--233222205652230121001-------245531222201001110
Q gi|255764471|r 82 EA-HLILFLIDSKA--GITPYDH-AITSFLRK--KNIPIIIVSNKMDTRIAQRNF-------YEIYSLDFKEIVEISAEH 148 (470)
Q Consensus 82 ~a-D~il~vvD~~~--g~~~~D~-~i~~~lr~--~~~~~ilv~NK~D~~~~~~~~-------~e~~~lg~~~~i~iSA~~ 148 (470)
+- .+|||++|-++ |.+..+. .+++-++. .++|+|+|+||||....+... .+.-.-|--.++..|..+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred HHHHHHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 75656411343221208889999999987678862884699952002568656687889999998860483388732554
Q ss_pred CCCCHHHHHH
Q ss_conf 2220147999
Q gi|255764471|r 149 DLGTSELHSV 158 (470)
Q Consensus 149 g~Gi~~L~~~ 158 (470)
-+|+-+....
T Consensus 326 eegVm~Vrt~ 335 (620)
T KOG1490 326 EEGVMDVRTT 335 (620)
T ss_pred HHCEEEHHHH
T ss_conf 0020007778
No 333
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=1.3e-14 Score=117.36 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=85.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 03886403564256788765201211000245665-42023114203406--9998171104444430001110001210
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.+|+++|-+.||||+|+++++..+ -.......|+ .|.....+..+|.+ +.++||||- |.+......
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~~-f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~----------e~~~~~~~~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGE-YDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQ----------EMWTEDSCM 69 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC----------HHHHHHHHH
T ss_conf 979999989970999999998198-698667874424889999999999989999989873----------126666565
Q ss_pred EEEECCEEEEEECCCCCCCHHHHH-HHHHHHH----CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212202122-3200000----03576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQDL-RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd~-~i~~~i~----~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
...+|.+++|.|.++.-+-+.. .+...+. ....|+|+|.||+||...+.-..++- +.+..-.+++.+.
T Consensus 70 --~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg-----~~~A~~~~~~F~E 142 (221)
T cd04148 70 --QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-----RACAVVFDCKFIE 142 (221)
T ss_pred --HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHH-----HHHHHHCCCEEEE
T ss_conf --306868999996466778888999999999864899951999853566686389999999-----9999985998999
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 345333485899999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~ 376 (470)
+||++|.||+++|..+..-..
T Consensus 143 tSAk~~~NV~elF~~lvrqIr 163 (221)
T cd04148 143 TSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 457999498999999999998
No 334
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=99.58 E-value=3.5e-15 Score=121.27 Aligned_cols=135 Identities=24% Similarity=0.335 Sum_probs=92.3
Q ss_pred HHCCEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHH---HHHH-HHCCCCCEEEHHHCCCCCH
Q ss_conf 877989999759887762---34455533210233222205652230121001---2455-3122220100111022201
Q gi|255764471|r 81 NEAHLILFLIDSKAGITP---YDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF---YEIY-SLDFKEIVEISAEHDLGTS 153 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~---~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~---~e~~-~lg~~~~i~iSA~~g~Gi~ 153 (470)
...|.++.|+-+..+... .|+.++- ....+.+.++|+||+|+....+.. .+.| .+|+ +++.+||..+.|++
T Consensus 79 ANiD~~~iV~s~~~P~~~~~~idR~Lv~-a~~~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~gy-~v~~~S~~~~~g~~ 156 (298)
T PRK00098 79 ANVDQAVIVFAAKEPDFSTDLLDRFLVL-AEANDIKPIIVLNKIDLVDDLEEARERLALYRAIGY-DVLELSAKEGPGLD 156 (298)
T ss_pred EECCEEEEEEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH
T ss_conf 7447899998568898998999999999-998699589996424564779999999999987899-78999689998999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 47999999861012345112210000111111222111233433234443038864035642567887652012110002
Q gi|255764471|r 154 ELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 (470)
Q Consensus 154 ~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~ 233 (470)
+|.+.+... ..+++|.+.||||||+|+|+++...-|++
T Consensus 157 ~L~~~l~~k------------------------------------------~sv~~G~SGVGKSSLiN~L~~~~~~~t~~ 194 (298)
T PRK00098 157 ELKPLLAGK------------------------------------------VTVLAGQSGVGKSTLLNALVPELELKTGE 194 (298)
T ss_pred HHHHHHCCC------------------------------------------EEEEECCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 999985798------------------------------------------69998789887888887607144456675
Q ss_pred HH-------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf 45-------6654202311420340699981711044
Q gi|255764471|r 234 QS-------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 234 ~~-------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
+. .||+.+- .+...|. .++||||+|.
T Consensus 195 is~~~~rGrHTTt~~~--l~~l~~G--~iiDTPG~r~ 227 (298)
T PRK00098 195 ISEALGRGKHTTTHVE--LYDLPGG--LLIDTPGFSS 227 (298)
T ss_pred HHHHCCCCCEEEEEEE--EEECCCC--EEEECCCCCC
T ss_conf 5665189721330468--9986997--5981898775
No 335
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.57 E-value=1.8e-14 Score=116.42 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=139.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHH------HHHHHCCCCEEEECC--EEEEEEECHHCCCCCCCCCHHHHHHC
Q ss_conf 3886403564256788765201211000245------665420231142034--06999817110444443000111000
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQS------GITRDSVSISWNWKN--HPIEIFDTAGMRKPSRITESLEQKTV 276 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~------GtTrD~i~~~~~~~~--~~~~liDTaGirkk~~~~~~~E~~s~ 276 (470)
-||..|+...||+||+-+|+|-+-.-+.+.| |.|.|-=+..|.+.+ +.+.|||-|| ||+|-
T Consensus 2 ~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPG----------He~fl- 70 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPG----------HEKFL- 70 (627)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCC----------HHHHH-
T ss_conf 6873124450479999985064301231277410257662460420036777771334785597----------38999-
Q ss_pred CCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1210012012059984553212202122320000003576-65589442233541-555666542013332004883111
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
..++.++...|-++||+||.+|+..|+.-.+..+...+-| .|+|+||+|.+++. -+..+.....+.+...++..+.++
T Consensus 71 ~n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~~~~ 150 (627)
T TIGR00475 71 SNALAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNAKIF 150 (627)
T ss_pred HHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99866756540100354157788532389999999708961999973467456589999999999998764321157479
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 23453334858999999999998414
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
-+||.||+||++|.+.+..+.++.+.
T Consensus 151 ~~SA~tG~Gi~~Lk~~L~~L~e~~~~ 176 (627)
T TIGR00475 151 KTSAKTGQGIEELKKELKNLLESLDI 176 (627)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99134687778999999865777655
No 336
>KOG2486 consensus
Probab=99.57 E-value=1.2e-14 Score=117.64 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=112.9
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCCC-CCHH-HHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCC---CH----
Q ss_conf 444303886403564256788765201211-0002-45665420231142034069998171104444430---00----
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRL-LTGS-QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT---ES---- 270 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~-~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~---~~---- 270 (470)
.+++++++++|+.|||||||+|.++...+. .++. .+|-|+ ....-.-|..+.++|.||..+.+--. .+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE---EEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 788852666247762278887654321455640378876511---32001205548998468865456785574147675
Q ss_pred HHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--
Q ss_conf 111000121001201205998455321220212232000000357665589442233541555666542013332004--
Q gi|255764471|r 271 LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-- 348 (470)
Q Consensus 271 ~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~-- 348 (470)
.+.|...|. .---|++++|++.++.+-|.-.+.++.+.+.|+.+|+||+|...+.....+.-...+...|+.+
T Consensus 210 t~~Y~leR~-----nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486 210 TKSYLLERE-----NLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHHHH-----HHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCCC
T ss_conf 788887265-----331156663036788998769998875249973886302445553022355754001210200150
Q ss_pred ----CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----8831112345333485899999999999
Q gi|255764471|r 349 ----GDIYINTISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 349 ----~~~~i~~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
...|-+.+|+-|+.|++.|+-.+.....
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~ 316 (320)
T KOG2486 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRG 316 (320)
T ss_pred CCEECCCCCEEEECCCCCCCEEEEEEHHHHHC
T ss_conf 00411587013204342572001101664425
No 337
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=99.57 E-value=5.5e-14 Score=113.19 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=116.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCC------------------------------CCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 44303886403564256788765201------------------------------211000245665420231142034
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGY------------------------------NRLLTGSQSGITRDSVSISWNWKN 250 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~------------------------------~r~ivs~~~GtTrD~i~~~~~~~~ 250 (470)
.+-++|+++|..++|||||+-+|+-. ++.-....-|.|.|.-...|+...
T Consensus 5 K~~lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~ 84 (449)
T PTZ00336 5 KVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPK 84 (449)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCC
T ss_conf 86439999927789688889999987488478999999999987187514325451277223228758986799997498
Q ss_pred EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHH-------HHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 069998171104444430001110001210012012059984553212202-------12232000000357-6655894
Q gi|255764471|r 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK-------QDLRIVDSVFNTGH-AVVLALN 322 (470)
Q Consensus 251 ~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~-------qd~~i~~~i~~~~k-~~iiv~N 322 (470)
+.|.|+|+|| +|.|- ...+.....+|++++|+||++|.-+ |.+..+.++...|. .+|+++|
T Consensus 85 ~~~~iiD~PG----------H~~fi-~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vN 153 (449)
T PTZ00336 85 SVFTIIDAPG----------HRDFI-KNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCN 153 (449)
T ss_pred EEEEEEECCC----------HHHHH-HHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 4899986894----------68889-999976500676799998787741035566775399999998669977999986
Q ss_pred CCC--CCCCHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCCCHHHH
Q ss_conf 422--33541555666542013332004----8831112345333485899
Q gi|255764471|r 323 KWD--MVSDKLNLLQDLRTKAIKNLPQI----GDIYINTISGRTGEGLDDL 367 (470)
Q Consensus 323 K~D--li~~~~~~~~~~~~~~~~~~~~~----~~~~i~~iSA~~g~gi~~l 367 (470)
|+| +++.....++++..++...+..+ ..++++||||++|.|+-+.
T Consensus 154 KmD~~~v~~~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~~ 204 (449)
T PTZ00336 154 KMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEK 204 (449)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 201566211378999999999999987499900054354201047775326
No 338
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=99.57 E-value=6.5e-14 Score=112.70 Aligned_cols=155 Identities=18% Similarity=0.273 Sum_probs=118.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCC------------------------------CCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 44303886403564256788765201------------------------------211000245665420231142034
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGY------------------------------NRLLTGSQSGITRDSVSISWNWKN 250 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~------------------------------~r~ivs~~~GtTrD~i~~~~~~~~ 250 (470)
.+.++++++|..++|||||+-+|+-. ++..-...-|.|.|.-...|+..+
T Consensus 5 k~~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~ 84 (443)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (443)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 87659999947798288889999987388468899999888887178720004453077667636710734799994398
Q ss_pred EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHH-------HHHHHHHHHHCCCCC-CCEEEE
Q ss_conf 069998171104444430001110001210012012059984553212202-------122320000003576-655894
Q gi|255764471|r 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK-------QDLRIVDSVFNTGHA-VVLALN 322 (470)
Q Consensus 251 ~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~-------qd~~i~~~i~~~~k~-~iiv~N 322 (470)
+.|.|+|+|| +|.|- ...+.....+|++++|+||++|.-+ |.+..+.++...|.+ +|+++|
T Consensus 85 ~~~~iiD~PG----------H~~fi-~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVN 153 (443)
T PTZ00141 85 YYYTVIDAPG----------HRDFI-KNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGIN 153 (443)
T ss_pred EEEEEEECCC----------HHHHH-HHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 8999998997----------28889-999963410775899998677852134666786399999999739975999999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCCCHHH
Q ss_conf 42233541555666542013332004----883111234533348589
Q gi|255764471|r 323 KWDMVSDKLNLLQDLRTKAIKNLPQI----GDIYINTISGRTGEGLDD 366 (470)
Q Consensus 323 K~Dli~~~~~~~~~~~~~~~~~~~~~----~~~~i~~iSA~~g~gi~~ 366 (470)
|+|+++.+...++++..++...+..+ ..+|++++||.+|.|+-+
T Consensus 154 KmD~v~~~e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~ 201 (443)
T PTZ00141 154 KMDTCDYKEDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIE 201 (443)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 621566609999999999999999739995666189634124665324
No 339
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.57 E-value=1.4e-13 Score=110.51 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=100.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589-853022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+.+|+++|-++||||||++|+++..- ...+ |-+--|.....+..+|.. +.+.||+|-.. +. .+ ...
T Consensus 3 ~~KivlvGd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~-----~~-~~---~~~ 71 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-----FR-TI---TTA 71 (167)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCC-----HH-HH---HHH
T ss_conf 89999999999788999999960999--998689864688999999999999999998999700-----11-66---799
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C---CCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEEEHHH
Q ss_conf 998779899997598877623445553321---0---2332222056522301210----012455-3122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR---K---KNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~---~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+- ..+-.|++ + .+.|+++|.||+|+..... ...++. ++|+ ..+.+||+
T Consensus 72 y~~~a~~~ilvfdit~~~Sf--~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~-~~~e~SAk 148 (167)
T cd01867 72 YYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAK 148 (167)
T ss_pred HHHHCCEEEEECCCCCHHHH--HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCC-EEEEECCC
T ss_conf 85650588995568987999--9999999999986699970576421245023077999999999998099-69998225
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
+|.|++++.+.+.+.+.+
T Consensus 149 tg~nI~e~F~~l~~~i~~ 166 (167)
T cd01867 149 ANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 790789999999999970
No 340
>PRK12735 elongation factor Tu; Reviewed
Probab=99.57 E-value=7.8e-14 Score=112.16 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=114.8
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCC---------------CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 23444303886403564256788765201---------------211000245665420231142034069998171104
Q gi|255764471|r 198 KNISKPLRIAVVGRPNVGKSTLINRLLGY---------------NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 198 ~~~~~~i~~~~~G~pN~GKStl~N~l~~~---------------~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
+...+.++|+++|..++|||||+-+|++. ++.--...-|.|.|.-...|+..++.|.++|+||
T Consensus 7 ~~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PG-- 84 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG-- 84 (396)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCC--
T ss_conf 789983499999426885898999986145452464312212211665674377379856999973980599983686--
Q ss_pred CCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 444430001110001210012012059984553212202122320000003576-6558944223354155566654201
Q gi|255764471|r 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRTKA 341 (470)
Q Consensus 263 kk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~~~ 341 (470)
+|.|. ...+.-...+|++++|+||++|+.+|.+..+.++...|.+ +|+++||+|+++++. ..+.++.++
T Consensus 85 --------He~fi-knMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~-~~e~v~~~i 154 (396)
T PRK12735 85 --------HADYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE-LLELVEMEV 154 (396)
T ss_pred --------HHHHH-HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH-HHHHHHHHH
T ss_conf --------68877-66641004256799999868787531699999999839985899998758888199-999999999
Q ss_pred CCCCCC----CCCCCCCCCCCCCCCCHH
Q ss_conf 333200----488311123453334858
Q gi|255764471|r 342 IKNLPQ----IGDIYINTISGRTGEGLD 365 (470)
Q Consensus 342 ~~~~~~----~~~~~i~~iSA~~g~gi~ 365 (470)
...+.. .+.+|++++||..+.+.+
T Consensus 155 ~~~l~~~~f~~~~~piv~~S~~~~~~~~ 182 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEECCCCC
T ss_conf 9999855999664779996733722588
No 341
>PRK00049 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.1e-13 Score=111.06 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=113.9
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHCC----------------CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHH
Q ss_conf 323444303886403564256788765201----------------2110002456654202311420340699981711
Q gi|255764471|r 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGY----------------NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 (470)
Q Consensus 197 ~~~~~~~i~~~~~G~pN~GKStl~N~l~~~----------------~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaG 260 (470)
.+...+.++|+++|+.++|||||+-+|++. ++.--...-|.|.|.-...|+.+++.|.++|+||
T Consensus 6 ~~~~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PG 85 (397)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPG 85 (397)
T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCC
T ss_conf 27899832999991258889999999986666543853100133302576676258169987999972881499951786
Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 04444430001110001210012012059984553212202122320000003576-65589442233541555666542
Q gi|255764471|r 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRT 339 (470)
Q Consensus 261 irkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~ 339 (470)
+|.|. ...+.-...+|++++|+||++|+.+|.+..+.++...|.+ +|+++||+|+++++ +..+.+..
T Consensus 86 ----------H~~fi-knmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~-~~~~~v~~ 153 (397)
T PRK00049 86 ----------HADYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-ELLELVEM 153 (397)
T ss_pred ----------HHHHH-HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH-HHHHHHHH
T ss_conf ----------38889-9987301215679999974888665289999999980998279999866888859-99999999
Q ss_pred HCCCCCCC----CCCCCCCCCCCCCCCC
Q ss_conf 01333200----4883111234533348
Q gi|255764471|r 340 KAIKNLPQ----IGDIYINTISGRTGEG 363 (470)
Q Consensus 340 ~~~~~~~~----~~~~~i~~iSA~~g~g 363 (470)
.+.+.+.. .+.+|++++||.++.+
T Consensus 154 ~i~~~l~~~~f~~~~ipiv~~S~~~~~~ 181 (397)
T PRK00049 154 EVRELLSKYDFPGDDTPIIRGSALKALE 181 (397)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEEEECC
T ss_conf 9999998469984447689855003114
No 342
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.57 E-value=1.1e-14 Score=117.97 Aligned_cols=158 Identities=28% Similarity=0.425 Sum_probs=132.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC--CCEEEEEEEEEEECC-----------EEEEEEECCCCCCC-CHHH
Q ss_conf 508999718988788899998588501025898--530223899999899-----------89999965884207-6368
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHP--GITRDRLYGQAIING-----------VIFNIVDTAGIADG-KNCS 67 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~--g~Trd~~~~~~~~~~-----------~~~~liDT~G~~~~-~~~~ 67 (470)
...++++|.||+|||+|+|++.+.+.++++..| |+|++.....+..+| ..+.++||||+... ....
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~ 82 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDA 82 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 50589973477660455544541012001023233320000001134558023434310242789862577113555544
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHH---------HHHHHHHHHHCC
Q ss_conf 99999999999998779899997598877623445553321023322220565223012---------100124553122
Q gi|255764471|r 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA---------QRNFYEIYSLDF 138 (470)
Q Consensus 68 ~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~---------~~~~~e~~~lg~ 138 (470)
+......++...+...|+++++.|...+..+.+..+.+.....+.|++++.||+|.... ......+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
T TIGR00231 83 LRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLNG 162 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf 54332234454443333333222111001025677875322127416998513365546754010000345555554236
Q ss_pred CC-CEEEHHHCCCCCHHHHHHH
Q ss_conf 22-0100111022201479999
Q gi|255764471|r 139 KE-IVEISAEHDLGTSELHSVI 159 (470)
Q Consensus 139 ~~-~i~iSA~~g~Gi~~L~~~i 159 (470)
.. .+++|+.++.|++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 163 EPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred CCCEEECCHHHHCCHHHHHHHH
T ss_conf 6401111001110045566654
No 343
>PRK12736 elongation factor Tu; Reviewed
Probab=99.56 E-value=2.6e-14 Score=115.33 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=115.4
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCC---------------CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCC
Q ss_conf 23444303886403564256788765201---------------211000245665420231142034069998171104
Q gi|255764471|r 198 KNISKPLRIAVVGRPNVGKSTLINRLLGY---------------NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 (470)
Q Consensus 198 ~~~~~~i~~~~~G~pN~GKStl~N~l~~~---------------~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGir 262 (470)
+...+.++|+++|..++|||||+-+|++. ++.--...-|.|.|.-...|+.+++.|.++|+||
T Consensus 7 ~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PG-- 84 (394)
T PRK12736 7 ERSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPG-- 84 (394)
T ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCC--
T ss_conf 789987499999512884898998975045450651022223311665562478217841899972883699988897--
Q ss_pred CCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 444430001110001210012012059984553212202122320000003576-6558944223354155566654201
Q gi|255764471|r 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKWDMVSDKLNLLQDLRTKA 341 (470)
Q Consensus 263 kk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~-~iiv~NK~Dli~~~~~~~~~~~~~~ 341 (470)
+|.|. ...+.....+|.+++|+||++|+.+|.+..+.++...|.+ +|+++||+|+++++ ...+.++.++
T Consensus 85 --------H~~fi-~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~-~~~~~v~~~i 154 (394)
T PRK12736 85 --------HADYV-KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDE-ELLELVEMEV 154 (394)
T ss_pred --------CHHHH-CCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-HHHHHHHHHH
T ss_conf --------25431-1044435346658999985877467799999999982999159999887899839-9999999999
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 3332004----883111234533348
Q gi|255764471|r 342 IKNLPQI----GDIYINTISGRTGEG 363 (470)
Q Consensus 342 ~~~~~~~----~~~~i~~iSA~~g~g 363 (470)
...+... +.+|++++||.++.+
T Consensus 155 ~~~l~~~g~~~~~ip~i~~s~~~~~~ 180 (394)
T PRK12736 155 RELLSEYDFPGDDIPVIRGSALKALE 180 (394)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 99998769991206099845436136
No 344
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.56 E-value=2.4e-14 Score=115.67 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=101.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+++.++|-.+||||+|+.+++... - ..+..-|.-|.....+.++|.. +.|||||| .|.|...+.+
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~-F-~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAG----------qE~y~~lr~~- 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-Y-PGSYVPTVFENYTASFEIDKRRIELNMWDTSG----------SSYYDNVRPL- 68 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-C-CCCCCCCEEEEEEEEEEECCEEEEEEEECCCC----------CCHHHHHHHH-
T ss_conf 099998989989899999996399-9-99847845877899999999999999976888----------5034556787-
Q ss_pred EEECCEEEEEECCCCCCCHHHH--HHHHHHHHCC--CCCCCEEEECCCCCCCHHHHHHHHHHH--------CCCCC-CCC
Q ss_conf 1201205998455321220212--2320000003--576655894422335415556665420--------13332-004
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQD--LRIVDSVFNT--GHAVVLALNKWDMVSDKLNLLQDLRTK--------AIKNL-PQI 348 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd--~~i~~~i~~~--~k~~iiv~NK~Dli~~~~~~~~~~~~~--------~~~~~-~~~ 348 (470)
..+.||++++|+|.++.-+-+. .+....+.+. +.|+|+|.||.||-++.... .++.+. -...+ ..+
T Consensus 69 yyr~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~-~el~~~~~~pVt~eeg~~lA~~~ 147 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATL-RELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 50369899999838977889999999999999858999789995874245687889-99985578887899999999976
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 88311123453334-8589999999999
Q gi|255764471|r 349 GDIYINTISGRTGE-GLDDLMVSVLEIN 375 (470)
Q Consensus 349 ~~~~i~~iSA~~g~-gi~~l~~~i~~~~ 375 (470)
..++.+.+||++|. |++++|+.+....
T Consensus 148 ga~~y~EcSAk~~~n~V~evF~~a~~~~ 175 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9988998884868749899999999999
No 345
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.56 E-value=9.4e-14 Score=111.63 Aligned_cols=149 Identities=22% Similarity=0.292 Sum_probs=99.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||++|++..+- ...+.-|.-|.....+.++|.. +.+.||+|-.. +. .+ ....+
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~f--~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~-----~~-~~---~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ-----FA-SM---RDLYI 70 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHH-----HH-HH---HHHHH
T ss_conf 3999989999789999999970989--97558852331679999888999999998988542-----56-78---89985
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHH----CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-5553321----023322220565223012100----1245-53122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLR----KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr----~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
..||++++|.|....-+-... ...+.+. ..+.|+++|.||+|+...... ..++ .++|+ ..+.+||++|.
T Consensus 71 ~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKT 149 (163)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 57865689712798899999999999999973899963999743134001276999999999998599-89998568781
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++.+.+.+.+
T Consensus 150 nV~~~F~~l~~~i 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHHH
T ss_conf 7799999999953
No 346
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=1.6e-13 Score=110.13 Aligned_cols=116 Identities=24% Similarity=0.331 Sum_probs=86.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCC-----C------HH------HHHHHHHCCCCEEEECC-EEEEEEECHHCCC
Q ss_conf 43038864035642567887652012110-----0------02------45665420231142034-0699981711044
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLL-----T------GS------QSGITRDSVSISWNWKN-HPIEIFDTAGMRK 263 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~i-----v------s~------~~GtTrD~i~~~~~~~~-~~~~liDTaGirk 263 (470)
+.-+|||+|+..+||+||..+|+-..-.+ | .| .-|.|.-+--..+.|++ +.+.||||||
T Consensus 9 ~IRNi~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPG--- 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPG--- 85 (693)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCC---
T ss_conf 87099999169999899999999966984658424389855678288997698873222548826973899991979---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 44430001110001210012012059984553212202122320000003576655894422335
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~ 328 (470)
+++..-| ..++++-+|.+++|+||.+|+..|++++.+++.+.+.|.++++||+|...
T Consensus 86 --HvDF~~E------v~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ 142 (693)
T PRK00007 86 --HVDFTIE------VERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTG 142 (693)
T ss_pred --CCCHHHH------HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf --7524899------99999985868999988988777799999999875989699997977899
No 347
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.56 E-value=1.1e-13 Score=111.24 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=95.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850-102589853022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+.+|+++|.++||||||++|+++.+- .-..++-|. |.....+.+++.. +.+.||+|-.. + ..+ ...
T Consensus 3 ~~Kiv~iGd~~VGKTsli~r~~~~~f~~~~~~Tig~--~~~~k~i~~~~~~~~l~iwDtaG~e~-----~-~~~---~~~ 71 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGV--EFATRSIQIDGKTIKAQIWDTAGQER-----Y-RAI---TSA 71 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCE--EEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHH
T ss_conf 589999999997899999999729899988987447--87899999999999999998999721-----2-678---998
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHH
Q ss_conf 99877989999759887762344555332---10---23322220565223012100----12455-3122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+- ..+-+|+ +. .+.|+++|.||+|+...... ..++. +.|+ ..+.+||+
T Consensus 72 ~~~~a~~~ilvydit~~~Sf--~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SAk 148 (165)
T cd01868 72 YYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETSAL 148 (165)
T ss_pred HHHHCCCEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 73320514898626988999--9999999999985557735987023478688578889999999998599-79996788
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0222014799999986
Q gi|255764471|r 148 HDLGTSELHSVIFKIF 163 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~ 163 (470)
+|.|++++.+.+.+.+
T Consensus 149 ~g~nV~e~F~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 8929899999999986
No 348
>PTZ00258 GTP-binding protein; Provisional
Probab=99.56 E-value=3.2e-15 Score=121.48 Aligned_cols=97 Identities=26% Similarity=0.320 Sum_probs=72.5
Q ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE------------C--C---EEEEEEE
Q ss_conf 433234443038864035642567887652012110002456654202311420------------3--4---0699981
Q gi|255764471|r 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW------------K--N---HPIEIFD 257 (470)
Q Consensus 195 ~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~------------~--~---~~~~liD 257 (470)
.........++++|||.||||||||+|+|+..+ +-+.+.|.||.|+--..+.. + . -.+.|+|
T Consensus 14 ~~~~~~~~~m~iGivGlPNvGKSTlFnAlT~~~-v~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vD 92 (392)
T PTZ00258 14 VLLGRPGNNLKMGIVGLPNVGKSTTFNALSKQQ-VPAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVD 92 (392)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 434777778556786699997899999987799-7424899888778327996784568899875187761014689997
Q ss_pred CHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCC
Q ss_conf 711044444300011100012100120120599845532
Q gi|255764471|r 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 (470)
Q Consensus 258 TaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~ 296 (470)
.||+-+..+..+++- ++-+..|+++|++++|+||.
T Consensus 93 IAGLV~GAs~G~GLG----NkFL~~iR~~DaiihVVR~F 127 (392)
T PTZ00258 93 IAGLVKGASKGEGLG----NAFLSHIRACDGIYHVVRAF 127 (392)
T ss_pred CCCCCCCCCCCCCCH----HHHHHHHHHCCHHHHHHHHH
T ss_conf 345578730268851----89999988400799999872
No 349
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.56 E-value=1e-13 Score=111.35 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC-C--EEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530-22389999989-9--899999658842076368999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIIN-G--VIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~-~--~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
+|+++|-++||||||+++++........++.-|+ -|.....+... + ..+.+.||+|-.. + ..+ ....
T Consensus 2 KivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~-----~-~~l---~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----Y-SDM---VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCC-----H-HHH---HHHH
T ss_conf 999999599588999999997888668888886457889999997899799999997999840-----0-678---9999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---HC--CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCC
Q ss_conf 9877989999759887762344555332---10--23322220565223012100----12455-312222010011102
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---RK--KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHD 149 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r~--~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g 149 (470)
+..||++++|.|..+.-+- ..+-+|+ +. .+.|+++|.||+|+...... ..++. ..++ ..+.+||++|
T Consensus 73 ~~~a~~~ilvydit~~~Sf--~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g 149 (164)
T cd04101 73 WESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRG 149 (164)
T ss_pred HHHCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 7642689999707746689--999999999997668986899987224452455699999999998899-8999866889
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+.+.+
T Consensus 150 ~nV~e~F~~lar~~ 163 (164)
T cd04101 150 VGYEEPFESLARAF 163 (164)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 09899999999986
No 350
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=6.6e-14 Score=112.65 Aligned_cols=146 Identities=19% Similarity=0.303 Sum_probs=98.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589-853022389999989989--9999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|-++||||||++|++..+- ...+ |-+.-|.....+..++.+ +.+.||+|-.... .+ +...
T Consensus 1 ~KIvllGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~------~~---~~~y 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF--HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ------TI---TKQY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHH
T ss_conf 9899999499858999999942998--99878872089889999999999999999799960236------35---5888
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHC------CCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEEEHHHC
Q ss_conf 987798999975988776234455533210------2332222056522301210----012455-31222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRK------KNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~------~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+.+|++. .+.|+++|.||+|...... ...++. +.|. +.+.+||++
T Consensus 70 ~r~a~~~ilvyDvt~~~Sf--~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~~~~~~a~~~~~-~~~etSAk~ 146 (161)
T cd04117 70 YRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSACT 146 (161)
T ss_pred HHHHCEEEEECCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 7641688996148988999--9999999999987899864999873278786277999999999998699-799967789
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|++++...+.+.
T Consensus 147 ~~nV~e~F~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 82989999999964
No 351
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.56 E-value=7.1e-14 Score=112.42 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=96.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589-85302238999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.+|+++|.++||||||++|++..+- ...+ |-+.-|.....+.+++. .+.+.||+|-.. + ..+ ....
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~-----~-~~l---~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-----F-RSI---TSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHH
T ss_conf 9899999899779999999941999--998688456666779999999999999996799446-----6-477---9988
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHH---HHC---CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 987798999975988776234455533---210---23322220565223012100----1245-531222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSF---LRK---KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~---lr~---~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+.+| ++. .+.|+++|.||+|+...... ..++ .++|+ ..+.+||++
T Consensus 70 ~~~~~~~ilvfdi~~~~Sf--~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAk~ 146 (164)
T smart00175 70 YRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKT 146 (164)
T ss_pred HCCCCEEEEECCCCCHHHH--HHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 3366536884368998999--9999999999986799982551164568565187999999999998499-799983166
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 2220147999999861
Q gi|255764471|r 149 DLGTSELHSVIFKIFK 164 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~ 164 (470)
|.|++++.+.+.+.+-
T Consensus 147 ~~~v~e~F~~l~~~i~ 162 (164)
T smart00175 147 NTNVEEAFEELAREIL 162 (164)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9088999999999997
No 352
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=1e-13 Score=111.41 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=98.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|+++|-++||||||++|+++.+- ..++.-|.-|.....+.+++.. +.+.||+|-... ..+ .....
T Consensus 2 ~KIvlvGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~------~~~---~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY------SIL---PQKYS 70 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCC------CHH---HHHHH
T ss_conf 8899999899889999999970978--998588124411379999999999999989987010------066---79998
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHH-H---CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-555332-1---023322220565223012100----1245-53122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFL-R---KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~l-r---~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
..||.+++|.|..+.-+-... .++..+ + ..+.|+++|.||+|+...... ..++ .++|. ..+.+||++|.
T Consensus 71 ~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~f~EtSAk~g~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 63557899974388788999999999999975888886797765346244078899999999998399-89997768891
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 201479999998610
Q gi|255764471|r 151 GTSELHSVIFKIFKQ 165 (470)
Q Consensus 151 Gi~~L~~~i~~~~~~ 165 (470)
|++++.+.+.+.+..
T Consensus 150 nV~e~F~~l~~~i~k 164 (180)
T cd04137 150 NVEEAFELLIEEIEK 164 (180)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 989999999999988
No 353
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=1.1e-13 Score=111.24 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=111.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCC---------------CCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCC
Q ss_conf 444303886403564256788765201---------------21100024566542023114203406999817110444
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGY---------------NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~---------------~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk 264 (470)
..+.++|+++|..++|||||+-+|++. ++.--...-|.|.|.-...|+..++.|.++|+||
T Consensus 9 ~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PG---- 84 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG---- 84 (409)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCC----
T ss_conf 9986999999545883999999986453004513343155323797687369448802489962875999986796----
Q ss_pred CCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC-CEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 44300011100012100120120599845532122021223200000035766-55894422335415556665420133
Q gi|255764471|r 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV-VLALNKWDMVSDKLNLLQDLRTKAIK 343 (470)
Q Consensus 265 ~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~-iiv~NK~Dli~~~~~~~~~~~~~~~~ 343 (470)
+|.|- ..++.....+|.+++|+||++|..+|.+..+.++...|.+. |+++||+|+++++ ...+.++.++.+
T Consensus 85 ------H~~fv-~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~-~~~e~i~~~i~~ 156 (409)
T CHL00071 85 ------HADYV-KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE-ELLELVELEVRE 156 (409)
T ss_pred ------HHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHHH
T ss_conf ------78999-9987523015812899986878850049999999973999365555567985489-999999999999
Q ss_pred CCCC----CCCCCCCCCCCCCCCC
Q ss_conf 3200----4883111234533348
Q gi|255764471|r 344 NLPQ----IGDIYINTISGRTGEG 363 (470)
Q Consensus 344 ~~~~----~~~~~i~~iSA~~g~g 363 (470)
.+.. ...+|++++||.+|.+
T Consensus 157 ~l~~~g~~~~~i~~vp~sa~~~~~ 180 (409)
T CHL00071 157 LLDKYDFPGDEIPIVAGSALLALE 180 (409)
T ss_pred HHHHCCCCCCCCEEEECCHHHHHH
T ss_conf 999739984556089652133234
No 354
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.56 E-value=4.4e-14 Score=113.84 Aligned_cols=146 Identities=23% Similarity=0.233 Sum_probs=95.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850-10258985302238999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|.++||||||++|++..+- .-..++.| -|.....+..++. .+.+.||+|-.. + ..+ +...
T Consensus 1 ~Kivl~Gd~~vGKTsli~r~~~~~f~~~~~~Tig--~~~~~k~~~~~~~~~~l~iwDtaG~e~-----~-~~~---~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRVGGKRVKLQIWDTAGQER-----F-RSV---TRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHH
T ss_conf 9899999499679999999972989998799764--578999999999999999998999701-----2-267---8998
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHH---C---CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHC
Q ss_conf 98779899997598877623445553321---0---23322220565223012100----12455-31222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLR---K---KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr---~---~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+.+|+. . .+.|+++|.||+|+...... ..++. +.++ ..+.+||++
T Consensus 70 ~~~a~~~ilvydit~~~Sf--~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~ 146 (161)
T cd04113 70 YRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSALT 146 (161)
T ss_pred HHCCCEEEEECCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 4057778995368988999--9999999999986799964986034344000378899999999998599-799974156
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|++++.+.+.+.
T Consensus 147 ~~nV~e~F~~la~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 90589999999970
No 355
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.55 E-value=1.1e-13 Score=111.04 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=99.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989989--9999658842076368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.++|+++|-++||||||++|++..+- ...+..|.-|.....+.+++.. +.+.||+|-... ..+ ....
T Consensus 2 t~Kiv~lGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~~------~~~---~~~~ 70 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF------SAM---REQY 70 (164)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCC------CHH---HHHH
T ss_conf 37999999999788999999980989--875678413589999999999999999989886031------256---7987
Q ss_pred HHHCCEEEEEECCCCCCCHHHH-HHHHHH-H---CCCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCC
Q ss_conf 9877989999759887762344-555332-1---023322220565223012100----12455-312222010011102
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDH-AITSFL-R---KKNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHD 149 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~-~i~~~l-r---~~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g 149 (470)
+..||++++|.|..+.-+-.+. ...+.+ + ..+.|+++|.||+|+...... ..++. ++++ ..+-+||++|
T Consensus 71 ~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SAk~~ 149 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 346787468985673543999999999999861887775265303457354088999999999998199-8999854868
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+++.+
T Consensus 150 ~nV~e~F~~l~~~I 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 27799999999975
No 356
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.55 E-value=1.2e-13 Score=110.99 Aligned_cols=149 Identities=21% Similarity=0.309 Sum_probs=100.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|.++||||||++|++...- ...+.-|.-|.....+.++|.+ +.+.||+|-.. + ..+ ....+
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~-----~-~~~---~~~y~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ-----F-TAM---RDLYI 70 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHH-----H-HHH---HHHHH
T ss_conf 1999989999889999999971959--88669954206999999999999998645765445-----5-567---89883
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHH----CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-5553321----023322220565223012100----1245-53122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLR----KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr----~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
..||.+++|.|..+.-+-... ...+.+. ..+.|+++|.||+|+...... ..++ .++|+ ..+-+||++|.
T Consensus 71 ~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAk~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKI 149 (163)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 46876999704898899999999999999861888886787623547264078999999999998499-89997448780
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++.+.+.+.+
T Consensus 150 nV~e~F~~l~~~i 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHHH
T ss_conf 5899999999963
No 357
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.55 E-value=6.9e-15 Score=119.25 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHH-HHHH---------CCCCEEE--ECCE-------EEEEEECHHCCCCCCCCCHHHHH
Q ss_conf 42567887652012110002456-6542---------0231142--0340-------69998171104444430001110
Q gi|255764471|r 214 VGKSTLINRLLGYNRLLTGSQSG-ITRD---------SVSISWN--WKNH-------PIEIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 214 ~GKStl~N~l~~~~r~ivs~~~G-tTrD---------~i~~~~~--~~~~-------~~~liDTaGirkk~~~~~~~E~~ 274 (470)
|--+||+.++=|. .+|+..|| .|+. .|...+. ++.. -..|||||| ||.|
T Consensus 561 vhnTTLLDkIRks--~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPG----------HeaF 628 (1145)
T TIGR00491 561 VHNTTLLDKIRKS--AVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPG----------HEAF 628 (1145)
T ss_pred EECCCCCCCCCCC--CEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCC----------CHHH
T ss_conf 8514331000334--013247788401006665466898651321211402578658015860786----------2344
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----H-----------HHHHHHHH
Q ss_conf 0012100120120599845532122021223200000035766558944223354-----1-----------55566654
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-----K-----------LNLLQDLR 338 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~-----~-----------~~~~~~~~ 338 (470)
+..|=..- .-||++|||+|..|||.+|+.--++.+.....|+||+.||+|++.. . ....+.+.
T Consensus 629 t~LRkRGG-AlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~ 707 (1145)
T TIGR00491 629 TNLRKRGG-ALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLD 707 (1145)
T ss_pred HCCCCCCC-HHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 22010010-36301101341026984034899999612898728950330558896454885166665411167886688
Q ss_pred HHCCC-----CCC--------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 20133-----320--------------0488311123453334858999999999998414
Q gi|255764471|r 339 TKAIK-----NLP--------------QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 (470)
Q Consensus 339 ~~~~~-----~~~--------------~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ 380 (470)
+.+.+ .|. |.+-+-|+||||.||+||.+|+-.+.=+.++|-+
T Consensus 708 ~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~ 768 (1145)
T TIGR00491 708 KKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLE 768 (1145)
T ss_pred HHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7789887302211258871225520000113689886656789748999999888889988
No 358
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.55 E-value=1.6e-13 Score=110.14 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=99.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||++|++..+- ...+.-|.-|.....+.++|.. +.+.||+|-.. + ..+ ....+
T Consensus 2 fKIvllGd~~VGKTsli~r~~~~~f--~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~-----~-~~l---~~~y~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----F-TAM---RDLYM 70 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHH-----H-HHH---HHHHH
T ss_conf 2999989999759999999970928--86568840468999999999999998514775432-----4-567---88873
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHHC----CCCCCCCCHHHHCCCHHHHHH----HHH-HHHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-55533210----233222205652230121001----245-53122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLRK----KNIPIIIVSNKMDTRIAQRNF----YEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr~----~~~~~ilv~NK~D~~~~~~~~----~e~-~~lg~~~~i~iSA~~g~ 150 (470)
..||.+++|.|..+.-+-.+. ...+.+.+ .+.|+++|.||+|+....... .++ .++|. ..+-+||++|.
T Consensus 71 ~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~-~~~E~SAk~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAKAKI 149 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 57868999960787778999999999999862899963998521457222068999999999998599-99996689881
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++.+.+.+.+
T Consensus 150 nV~~~F~~l~~~i 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHH
T ss_conf 7899999999986
No 359
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=6.4e-14 Score=112.73 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=95.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.+|+++|.++||||||++|+++.+- ..++..|.-|.....+..++.. +.+.||+|-... ..+ ....+
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~------~~~---~~~~~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY------DRL---RPLSY 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCC------CCC---HHHHH
T ss_conf 9899999999669999999962999--987588034666899999999999999989987102------413---22344
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHH-HH---HC--CCCCCCCCHHHHCCCHHHH---------------HHHHH-HHHCC
Q ss_conf 8779899997598877623445553-32---10--2332222056522301210---------------01245-53122
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITS-FL---RK--KNIPIIIVSNKMDTRIAQR---------------NFYEI-YSLDF 138 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~-~l---r~--~~~~~ilv~NK~D~~~~~~---------------~~~e~-~~lg~ 138 (470)
..||++++|.|..+.-+-+ .+.. |+ ++ .+.|+++|.||+|+..... ...++ .++|.
T Consensus 70 ~~a~~~ilvydit~~~Sf~--~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~~~ 147 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFE--NVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred HHCCEEEEEEECCCHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 4265899999689778899--99999999999859998689999871001230002233114751589999999998499
Q ss_pred CCCEEEHHHCCCCCHHHHHHHHH
Q ss_conf 22010011102220147999999
Q gi|255764471|r 139 KEIVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 139 ~~~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
-..+.+||++|.|++++.+.+.+
T Consensus 148 ~~f~E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CEEEEECCCCCCCHHHHHHHHHC
T ss_conf 88999787899598999999966
No 360
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.55 E-value=2.5e-13 Score=108.75 Aligned_cols=150 Identities=20% Similarity=0.282 Sum_probs=98.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530-22389999989989--9999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.+|+++|-++||||||+.|+++..- ...+..|. -|.....+.++|.. +.+.||+|-.. + ..+ ....
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~-----~-~~l---~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-----F-QSL---GVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHH
T ss_conf 9899999899789999999952988--987577555169999999999999999996999831-----1-068---8998
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHH----C------CCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEEE
Q ss_conf 98779899997598877623445553321----0------2332222056522301210----012455-3122220100
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLR----K------KNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVEI 144 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr----~------~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~i 144 (470)
+..||++++|.|..+.-+- ..+..|+. . ...|+++|.||+|+..... ...++. +.|.-..+.+
T Consensus 70 ~~~a~~~ilvydvt~~~Sf--~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~~E~ 147 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSF--ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHHCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 6527579999338998999--99999999999972767765763899963368364189999999999997699789997
Q ss_pred HHHCCCCCHHHHHHHHHHHHH
Q ss_conf 111022201479999998610
Q gi|255764471|r 145 SAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 145 SA~~g~Gi~~L~~~i~~~~~~ 165 (470)
||++|.|++++.+.+.+.+-+
T Consensus 148 SAk~~~nV~e~F~~l~~~~l~ 168 (172)
T cd01862 148 SAKEAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 526791989999999999998
No 361
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.55 E-value=9.8e-14 Score=111.50 Aligned_cols=151 Identities=17% Similarity=0.287 Sum_probs=99.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850-102589853022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+.+|+++|-++||||||+.|++...- .-..+..|. |.....+..++.. +.|.||+|-.. +. .+ ...
T Consensus 6 ~~KivllGd~~VGKTsl~~r~~~~~f~~~y~~Tig~--~~~~k~~~~~~~~v~l~iwDtaGqe~-----f~-~l---~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGI--DYKTTTILLDGRRVKLQLWDTSGQGR-----FC-TI---FRS 74 (189)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCE--EEEEEEEEECCEEEEEEEECCCCCCC-----HH-HH---HHH
T ss_conf 999999998997899999999749978986876537--98999999999999999981788622-----11-67---898
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C--CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHC
Q ss_conf 998779899997598877623445553321---0--23322220565223012100----12455-31222201001110
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR---K--KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEH 148 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~--~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~ 148 (470)
.+..||.+++|.|....-+- ..+-+|+. . .+.|++||.||+|+...... ..+|. ++|+ ..+.+||++
T Consensus 75 y~r~a~~~ilvyDvt~~~Sf--~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r~V~~ee~~~~A~~~~~-~f~EtSAk~ 151 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSF--DGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred HHHHCCCEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 86633704898227988999--999999999999768987899613255033088999999999998899-999960067
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 222014799999986101
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~ 166 (470)
|.|++++.+.+.+.+-..
T Consensus 152 g~nV~e~F~~l~~~il~~ 169 (189)
T cd04121 152 NFNITESFTELARIVLMR 169 (189)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 939899999999999986
No 362
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.55 E-value=9.5e-15 Score=118.32 Aligned_cols=137 Identities=26% Similarity=0.312 Sum_probs=93.2
Q ss_pred HHHCCEEEEEECCCCCC-CH--HHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHH---HHHHHCCCCCEEEHHHCCCCCH
Q ss_conf 98779899997598877-62--344555332102332222056522301210012---4553122220100111022201
Q gi|255764471|r 80 INEAHLILFLIDSKAGI-TP--YDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY---EIYSLDFKEIVEISAEHDLGTS 153 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~-~~--~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~~~---e~~~lg~~~~i~iSA~~g~Gi~ 153 (470)
+...|.++.|+-+..+. .. .|+.++ .....+.+.++|+||+|+....+... .+..+|+ +++.+||.++.|++
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv-~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~gy-~v~~~S~~~~~g~~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEAAGIEPVIVLTKADLLDDEEEELELVEALALGY-PVLAVSAKTGEGLD 153 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHH-HHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCC-EEEEEECCCCCCHH
T ss_conf 9726689999526899899899999999-999779968999986221994899999999872998-49999668985889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 47999999861012345112210000111111222111233433234443038864035642567887652012110002
Q gi|255764471|r 154 ELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 (470)
Q Consensus 154 ~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~ 233 (470)
+|.+.+... ..+++|.+.||||||+|+|+++....|++
T Consensus 154 ~L~~~l~~k------------------------------------------~~v~~G~SGvGKSSLiN~L~~~~~~~t~~ 191 (287)
T cd01854 154 ELREYLKGK------------------------------------------TSVLVGQSGVGKSTLINALLPDLDLATGE 191 (287)
T ss_pred HHHHHHCCC------------------------------------------EEEEECCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 999874798------------------------------------------89998899888899998746212125666
Q ss_pred HH-------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf 45-------6654202311420340699981711044
Q gi|255764471|r 234 QS-------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 234 ~~-------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
+. .||+-+ ..+...+ .-.++||||+|.
T Consensus 192 vs~~~~rGrHTTt~~--~L~~l~~-gg~iiDTPG~r~ 225 (287)
T cd01854 192 ISEKLGRGRHTTTHR--ELFPLPG-GGLLIDTPGFRE 225 (287)
T ss_pred HHHHHCCCCEEEEEE--EEEECCC-CCEEEECCCCCC
T ss_conf 677608985014157--9999289-958986898763
No 363
>KOG0458 consensus
Probab=99.55 E-value=4.7e-14 Score=113.63 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=111.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC-----C--------------------CCCH-----HHHHHHHHCCCCEEEECCE
Q ss_conf 43038864035642567887652012-----1--------------------1000-----2456654202311420340
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYN-----R--------------------LLTG-----SQSGITRDSVSISWNWKNH 251 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~-----r--------------------~ivs-----~~~GtTrD~i~~~~~~~~~ 251 (470)
.-+..+++|..++|||||+-+|+-.= | .++. ..-|.|-|.-...|+-+-+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCE
T ss_conf 61589997023454111023788873686578899999998752875302567743631245436367754689846861
Q ss_pred EEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCC-------CHHHHHHHHHHHHCCCC-CCCEEEEC
Q ss_conf 69998171104444430001110001210012012059984553212-------20212232000000357-66558944
Q gi|255764471|r 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP-------FEKQDLRIVDSVFNTGH-AVVLALNK 323 (470)
Q Consensus 252 ~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~-------~~~qd~~i~~~i~~~~k-~~iiv~NK 323 (470)
.+.|+|+||.+ .| +..++..+..||++++|+||+.+ ...|..-++.++.-.|. -+||++||
T Consensus 256 ~~tliDaPGhk----------dF-i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNK 324 (603)
T KOG0458 256 IVTLIDAPGHK----------DF-IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINK 324 (603)
T ss_pred EEEEECCCCCC----------CC-CHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 69986078742----------35-52343362215668999987754333134879865899999987495258888630
Q ss_pred CCCCCCHHHHHHHHHHHCCCCC----CCCC-CCCCCCCCCCCCCCHHHH
Q ss_conf 2233541555666542013332----0048-831112345333485899
Q gi|255764471|r 324 WDMVSDKLNLLQDLRTKAIKNL----PQIG-DIYINTISGRTGEGLDDL 367 (470)
Q Consensus 324 ~Dli~~~~~~~~~~~~~~~~~~----~~~~-~~~i~~iSA~~g~gi~~l 367 (470)
+|+++...+.++++...+...+ .|.+ .+..+|||+++|+|+-+.
T Consensus 325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458 325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 1012753889999999899999985285047765695546567762123
No 364
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.55 E-value=7.2e-14 Score=112.40 Aligned_cols=152 Identities=23% Similarity=0.348 Sum_probs=101.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589-85302238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|.++||||||++|++...- ..++ |-+..|.....+.+++. .+.+-||+|-.... .+ ...
T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~~F--~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~--~l-------~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR--TI-------TST 74 (199)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC--CC-------HHH
T ss_conf 77999999799888999999950999--99868975558789999999999999999899981235--35-------266
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHC
Q ss_conf 9987798999975988776234455533210-----23322220565223012100----12455-31222201001110
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRK-----KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEH 148 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~ 148 (470)
.+..||++++|.|....-+- ..+-.|+.. ...|+++|.||+|....... ..+|. ++++ ..+.+||++
T Consensus 75 ~~~~a~~~ilvyDit~~~Sf--~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~-~f~E~SAkt 151 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred HHHCCCCCEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 64246542389717988999--999999999997599875799988554475469999999999998699-799986899
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 2220147999999861012
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~ 167 (470)
|.|++++.+.+.+.+-+..
T Consensus 152 g~nV~e~F~~i~~~i~~~~ 170 (199)
T cd04110 152 NINVEEMFNCITELVLRAK 170 (199)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9298999999999999974
No 365
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.54 E-value=8.7e-14 Score=111.83 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=96.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589-853022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+.+|+++|.++||||||++|++...- ...+ |-+.-|.....++.++.. +.+.||||-... ..+ ...
T Consensus 5 ~~KivvlGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~------~~l---~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF------RSL---RTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCC------CCC---HHH
T ss_conf 89999999999789999999973989--9988887607989999999999999999989997243------524---176
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH----------CCCCCCCCCHHHHCCCHHHHHH---HHH-HHHCCCCCEEE
Q ss_conf 998779899997598877623445553321----------0233222205652230121001---245-53122220100
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR----------KKNIPIIIVSNKMDTRIAQRNF---YEI-YSLDFKEIVEI 144 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr----------~~~~~~ilv~NK~D~~~~~~~~---~e~-~~lg~~~~i~i 144 (470)
.+..||++++|.|..+.-+- ..+..|+. ..+.|+++|.||+|+....... .++ .+.|.-..+.+
T Consensus 74 ~~~~a~~~ilvydit~~~Sf--~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v~~~e~~~~a~~~~~~~~~E~ 151 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSF--QNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred HEECCCEEEEEEECCCHHHH--HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 60047733999978887999--9999999999997144578884099996111130378899999999998599789998
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 111022201479999998
Q gi|255764471|r 145 SAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 145 SA~~g~Gi~~L~~~i~~~ 162 (470)
||++|.|++++.+.+.+.
T Consensus 152 SAk~g~nV~~~F~~l~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCCCCHHHHHHHHHHC
T ss_conf 888881889999999953
No 366
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.54 E-value=1.3e-13 Score=110.69 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=97.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|.++||||||++|++...-. -.-.|-+--|.....+..++. .+.+-||+|-.. + ..+ .....
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~-----~-~~l---~~~y~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK-----F-GGL---RDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHH
T ss_conf 98999999998889999999839999-98687325567999999999799999997578715-----6-668---78874
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHH-----CCCCCCCCCHHHHCCCHHHH--HHHHHH-HHCCCCCEEEHHHCCCCC
Q ss_conf 8779899997598877623445553321-----02332222056522301210--012455-312222010011102220
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIPIIIVSNKMDTRIAQR--NFYEIY-SLDFKEIVEISAEHDLGT 152 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr-----~~~~~~ilv~NK~D~~~~~~--~~~e~~-~lg~~~~i~iSA~~g~Gi 152 (470)
..||.+|+|.|..+.-+- ..+-+|+. ..+.|+++|.||+|+..... ...++. +.++ +.+.+||++|.|+
T Consensus 71 ~~a~~~ilvyDvt~~~Sf--~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~~~~~~~~~~~~~-~~~EtSAk~~~nV 147 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNL-QYYEISAKSNYNF 147 (166)
T ss_pred CCCCEEEEECCCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 006579984378988899--9999999999986899989999986217503667999999997899-8999845899098
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 14799999986101
Q gi|255764471|r 153 SELHSVIFKIFKQK 166 (470)
Q Consensus 153 ~~L~~~i~~~~~~~ 166 (470)
+++...+.+.+...
T Consensus 148 ~e~F~~la~~il~~ 161 (166)
T cd00877 148 EKPFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998428
No 367
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.54 E-value=5.2e-14 Score=113.33 Aligned_cols=146 Identities=22% Similarity=0.297 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850-102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||++|++...- .-..++.|.+ .....+..++.. +.+.||||-... ..+ +....
T Consensus 2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~--~~~~~~~~~~~~~~l~iwDtaG~e~f------~~~---~~~y~ 70 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKFEGKTILVDFWDTAGQERF------QTM---HASYY 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEE--EEEEEEEECCEEEEEEEEECCCCCCC------CHH---HHHHH
T ss_conf 89999989967899999998097799726654157--99999999999999999979998434------324---69973
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHH-----CCCCCCCCCHHHHCCCHHHH-HHHHHH-HHCCCCCEEEHHHCCCCCH
Q ss_conf 8779899997598877623445553321-----02332222056522301210-012455-3122220100111022201
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIPIIIVSNKMDTRIAQR-NFYEIY-SLDFKEIVEISAEHDLGTS 153 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr-----~~~~~~ilv~NK~D~~~~~~-~~~e~~-~lg~~~~i~iSA~~g~Gi~ 153 (470)
..||++++|.|..+.-+- ..+-.|+. ..+.|+++|.||+|+..... ...++. ++|+ +.+.+||++|.|++
T Consensus 71 ~~a~~~ilvfDit~~~Sf--~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~~~~~~~~~a~~~~~-~f~etSAk~g~nV~ 147 (161)
T cd04124 71 HKAHACILVFDVTRKITY--KNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNL-PLYYVSAADGTNVV 147 (161)
T ss_pred CCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHH
T ss_conf 568767999968977889--999999999998686998999999711774258999999998699-19999078380979
Q ss_pred HHHHHHHHHH
Q ss_conf 4799999986
Q gi|255764471|r 154 ELHSVIFKIF 163 (470)
Q Consensus 154 ~L~~~i~~~~ 163 (470)
++.+.+.+..
T Consensus 148 e~F~~l~~~~ 157 (161)
T cd04124 148 KLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 368
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.54 E-value=1.3e-13 Score=110.59 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=99.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853-02238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|-++||||||++|+++..- ..++..| .-|.....+.+++. .+.+.||+|-.... .+ ...
T Consensus 2 ~~Kiv~vGd~~vGKTsli~r~~~~~f--~~~y~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~--~~-------~~~ 70 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR--TI-------TSS 70 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC--CC-------HHH
T ss_conf 69999999999789999999943999--98747854404899999999999999999899982346--26-------788
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH------CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHH
Q ss_conf 998779899997598877623445553321------023322220565223012100----1245-53122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR------KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr------~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+- ..+-.|+. ..+.|+++|.||+|+...... ..++ .++|. ..+.+||+
T Consensus 71 ~~~~a~~~ilvfdit~~~Sf--~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAk 147 (166)
T cd01869 71 YYRGAHGIIIVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAK 147 (166)
T ss_pred HHHHCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 85632677997117998999--9999999999986787774488613201131466799999999998399-69998768
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
+|.|++++.+.+.+.+..
T Consensus 148 ~g~nI~e~F~~l~~~i~k 165 (166)
T cd01869 148 NATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 780689999999999971
No 369
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.54 E-value=7.2e-14 Score=112.42 Aligned_cols=149 Identities=24% Similarity=0.274 Sum_probs=98.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-EEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223-8999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDR-LYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~-~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.+|+++|.++||||||++|+++.. ...+++.|+.+. ....+..+|. .+.+.||+|-.... .+ ....
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~--f~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~~~~------~~---~~~~ 69 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK--FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH------AL---GPIY 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---CHHH
T ss_conf 989999999967999999998398--998767752647999999999999999999589973035------56---3133
Q ss_pred HHHCCEEEEEECCCCCCCHHHH-HHHHHHHC---CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCCC
Q ss_conf 9877989999759887762344-55533210---23322220565223012100----1245-53122220100111022
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDH-AITSFLRK---KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHDL 150 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~-~i~~~lr~---~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g~ 150 (470)
+..||++++|.|..+.-+-... ...+.+++ .+.|+++|.||+|+...... ..++ .++|. +.+.+||++|.
T Consensus 70 ~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v~~~e~~~~a~~~~~-~y~e~Sak~g~ 148 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred EECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHCCC-EEEEEECCCCC
T ss_conf 01144579996389989999999999999987699974686633213254088899999999998299-89998127881
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++...+.+.+
T Consensus 149 nV~e~F~~l~~~i 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999986
No 370
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.54 E-value=9.8e-14 Score=111.51 Aligned_cols=148 Identities=24% Similarity=0.306 Sum_probs=97.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589-853022389999989989--9999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.+|+++|-++||||||++|++...- ...+ |-+-.|.....+.+++.. +.+.||+|-.. + ..+ ....
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~-----~-~~~---~~~~ 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-----Y-RSL---APMY 70 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHH
T ss_conf 7999999599689999999943989--998688666788999999999999999997999710-----0-278---8988
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 9877989999759887762344555332---10---23322220565223012100----1245-531222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+-.|+ ++ .+.|+++|.||+|+...... ..++ .+.|. ..+.+||++
T Consensus 71 ~~~a~~~ilvydit~~~Sf--~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~ 147 (163)
T cd01860 71 YRGAAAAIVVYDITSEESF--EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKT 147 (163)
T ss_pred HCCCCCEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 5167714999818997999--9999999999985598723677553357565089999999999998299-799986265
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 2220147999999861
Q gi|255764471|r 149 DLGTSELHSVIFKIFK 164 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~ 164 (470)
|.|++++.+.+.+.+|
T Consensus 148 ~~nV~e~F~~l~~~i~ 163 (163)
T cd01860 148 GENVNELFTEIAKKLP 163 (163)
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 9078999999998583
No 371
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=2.7e-13 Score=108.58 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=100.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCEEE--EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530-223899999899899--9996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGVIF--NIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~~~--~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||++|+++..= ..++.-|. .|.....+..+|.++ .+.||+|-.. +. .+ ....+
T Consensus 2 KivlvGd~~VGKTsLi~rf~~~~F--~~~y~~Tig~d~~~k~i~v~~~~v~l~iwDtaGqe~-----f~-~~---~~~y~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE-----FI-NM---LPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH-----HH-HH---HHHHH
T ss_conf 899999999898999999953999--999888733898999999999999999986776487-----89-99---99986
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHH---CC--CCCCCCCHHHHCCCHH------HHHHH---HH-HHHCCCCCEEEH
Q ss_conf 8779899997598877623445553321---02--3322220565223012------10012---45-531222201001
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLR---KK--NIPIIIVSNKMDTRIA------QRNFY---EI-YSLDFKEIVEIS 145 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr---~~--~~~~ilv~NK~D~~~~------~~~~~---e~-~~lg~~~~i~iS 145 (470)
..|+++++|.|..+.-+- ..+-+|++ +. ..+.++|.||+|+... +.... +| .++|+ +.+.+|
T Consensus 71 ~~a~~~ilvfDit~~~Sf--~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~~~-~f~etS 147 (182)
T cd04128 71 NDAVAILFMFDLTRKSTL--NSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFCS 147 (182)
T ss_pred CCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHCCC-EEEEEE
T ss_conf 478789999978998999--98999999999768999889999866355655622310248999999998499-899994
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 11022201479999998610123451
Q gi|255764471|r 146 AEHDLGTSELHSVIFKIFKQKYPNHP 171 (470)
Q Consensus 146 A~~g~Gi~~L~~~i~~~~~~~~~~~~ 171 (470)
|++|.|++++.+.+...+-+.....|
T Consensus 148 Ak~~~nV~e~F~~i~~~i~~~~~~~~ 173 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAFDLPLTIP 173 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 79997989999999999966899711
No 372
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=2.3e-13 Score=108.97 Aligned_cols=146 Identities=18% Similarity=0.245 Sum_probs=96.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853-02238999998998--999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|++||.++||||||++++++..- ...+..| ..|.....+..++. .+.+.||+|-.. +.. + ....+
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~-----~~~-~---~~~~~ 70 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF--DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-----FRS-L---IPSYI 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----HHH-H---HHHHH
T ss_conf 799999799789999999931999--998489756788999999999999999997998531-----578-8---89886
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHHHH----HHH-HHHCCCCCEEEHHHCC
Q ss_conf 877989999759887762344555332---10---233222205652230121001----245-5312222010011102
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQRNF----YEI-YSLDFKEIVEISAEHD 149 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~~~----~e~-~~lg~~~~i~iSA~~g 149 (470)
..||++++|.|..+.-+- ..+.+|+ +. ...|+++|.||+|+....... ..+ .+.|. ..+.+||++|
T Consensus 71 ~~~~~~ilvfd~t~~~Sf--~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~~~e~~~~a~~~~~-~y~E~Sak~~ 147 (161)
T cd01861 71 RDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSAKAG 147 (161)
T ss_pred HHHCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 652589999847998999--9999999999986578984999610211022177899999999998499-8999834778
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+.+.+
T Consensus 148 ~nV~e~F~~la~~l 161 (161)
T cd01861 148 HNVKELFRKIASAL 161 (161)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 08899999999709
No 373
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=3.4e-14 Score=114.56 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=100.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
++|.++|-++||||+|+++++...= -.....|--|.....++++|.. +.|||||| .|.|...+.+
T Consensus 14 ~KiVlVGD~~VGKTsLl~~~~~~~F--~~~y~pTv~~~~~~~i~v~~~~v~L~lWDTAG----------qE~y~~lr~~- 80 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSG----------SPYYDNVRPL- 80 (232)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCHHHHH-
T ss_conf 8999999899899999999973989--99858836888899999999999999983899----------7010036799-
Q ss_pred EEECCEEEEEECCCCCCCH--H-HHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHC--------CCCCC-C
Q ss_conf 1201205998455321220--2-12232000000--35766558944223354155566654201--------33320-0
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFE--K-QDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKA--------IKNLP-Q 347 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~--~-qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~--------~~~~~-~ 347 (470)
..+.||++++|+|.+..-+ . .+.|+- .+.+ .+.|+|+|.||.||-.+... ..++...- ...+. .
T Consensus 81 yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~-Ei~~~~p~~piiLVGnK~DLr~d~~~-l~~L~~~~~~pVt~eeg~~~Ak~ 158 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKA-EIMDYCPSTRILLIGCKTDLRTDLST-LMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHH-HHHHHCCCCCEEEEEECHHCCCCHHH-HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 74068789999968987999989999999-99986899978999876021547577-88997568887579999999997
Q ss_pred CCCCCCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 488311123453334-858999999999998
Q gi|255764471|r 348 IGDIYINTISGRTGE-GLDDLMVSVLEINKL 377 (470)
Q Consensus 348 ~~~~~i~~iSA~~g~-gi~~l~~~i~~~~~~ 377 (470)
+.....+.+||+||+ |++++|+.+.....+
T Consensus 159 iga~~Y~E~SA~tge~~v~~vF~~a~~~~~~ 189 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4997899875686662599999999999985
No 374
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=99.54 E-value=9.4e-15 Score=118.37 Aligned_cols=135 Identities=24% Similarity=0.343 Sum_probs=88.9
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHH---HCCCCCCCCCHHHHCCCHHHHH-----HHHHH-HHCCCCCEEEHHHCCCC
Q ss_conf 877989999759887762344555332---1023322220565223012100-----12455-31222201001110222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFL---RKKNIPIIIVSNKMDTRIAQRN-----FYEIY-SLDFKEIVEISAEHDLG 151 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~l---r~~~~~~ilv~NK~D~~~~~~~-----~~e~~-~lg~~~~i~iSA~~g~G 151 (470)
...|-++.|+-+. +.+...-|-++| ...+.+.++|+||+|+...+.. ..+.| .+|+ +++.+||+++.|
T Consensus 121 ANIDqvlIV~A~~--P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~lGY-~v~~~Sa~~~~g 197 (344)
T PRK12288 121 ANIDQIVIVSAVL--PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNIGY-RVLMVSSHTGEG 197 (344)
T ss_pred EECCEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCC
T ss_conf 7168899999689--9989789999999999869977999731440897789999999999986797-399973688628
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 01479999998610123451122100001111112221112334332344430388640356425678876520121100
Q gi|255764471|r 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 (470)
Q Consensus 152 i~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~iv 231 (470)
+++|.+.+... ..+++|.+.||||||+|+|+......|
T Consensus 198 l~~L~~~L~~k------------------------------------------tsvf~GqSGVGKSSLiN~L~p~~~~~t 235 (344)
T PRK12288 198 LEPLEAALTGR------------------------------------------ISIFVGQSGVGKSSLINALLPEAEILV 235 (344)
T ss_pred HHHHHHHHCCC------------------------------------------EEEEEECCCCCHHHHHHHCCCHHHHHH
T ss_conf 99999987678------------------------------------------599980687678888761075334223
Q ss_pred HHHH-------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf 0245-------6654202311420340699981711044
Q gi|255764471|r 232 GSQS-------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 232 s~~~-------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
+++. .||+-+ ..+.+.+. -.+|||||+|.
T Consensus 236 geIS~~~~~GrHTTt~~--~L~~l~~g-G~lIDTPG~re 271 (344)
T PRK12288 236 GDVSENSGLGQHTTTTA--RLYHFPHG-GDLIDSPGVRE 271 (344)
T ss_pred HHHHHHCCCCCCEEEEE--EEEECCCC-CEEEECCCCCC
T ss_conf 20143338866401168--99992899-87973898765
No 375
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.54 E-value=1.7e-13 Score=109.94 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589-853022389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||+.|++..+- ...+ |-+.-|.....+.+++.. +.+.||+|-.. + ..+ ....+
T Consensus 2 KivvvG~~~vGKTSLi~r~~~~~f--~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~-----~-~~~---~~~~~ 70 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF--VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----Y-LEV---RNEFY 70 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHH
T ss_conf 899999599568999999963999--998589765577799999999999999998999764-----7-899---99998
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHC-----------CCCCCCCCHHHHCCCHHHHHH----HHHH-HHCCCCCEEE
Q ss_conf 87798999975988776234455533210-----------233222205652230121001----2455-3122220100
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRK-----------KNIPIIIVSNKMDTRIAQRNF----YEIY-SLDFKEIVEI 144 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~-----------~~~~~ilv~NK~D~~~~~~~~----~e~~-~lg~~~~i~i 144 (470)
..||++++|.|..+.-+-+ .+.+|++. ...|+++|.||+|........ .++. ++|+ +.+.+
T Consensus 71 ~~ad~~ilvydit~~~Sf~--~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~ 147 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFE--ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFET 147 (168)
T ss_pred HHCCEEEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC-EEEEE
T ss_conf 7477889995089744489--99999999999824534566862999854034442578899999999998699-89998
Q ss_pred HHHCCCCCHHHHHHHHHHH
Q ss_conf 1110222014799999986
Q gi|255764471|r 145 SAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 145 SA~~g~Gi~~L~~~i~~~~ 163 (470)
||++|.|++++.+.+.+.+
T Consensus 148 Sak~g~~V~e~F~~l~~~i 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 8577908899999999997
No 376
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.54 E-value=1e-13 Score=111.44 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=97.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||++|++..+- ..++.-|.-|.....+.+++.. +.+.||+|-.... .+ ....+
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~------~~---~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT------AM---RELYI 70 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHHH
T ss_conf 1999989999779999999961938--9865883331599999999999999998278862333------45---15451
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHH----CCCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHHCCC
Q ss_conf 877989999759887762344-5553321----023322220565223012100----12455-3122220100111022
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLR----KKNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAEHDL 150 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr----~~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~~g~ 150 (470)
..||.+++|.|..+.-+-... ...+.+. ..+.|+++|.||+|+...... ..++. ++|.-+.+.+||++|.
T Consensus 71 ~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~ 150 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 26866798536898889999999999999851788874898873146121376899999999997499779996248784
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2014799999986
Q gi|255764471|r 151 GTSELHSVIFKIF 163 (470)
Q Consensus 151 Gi~~L~~~i~~~~ 163 (470)
|++++.+.+.+.+
T Consensus 151 nV~e~F~~l~~~i 163 (168)
T cd04177 151 NVDEVFIDLVRQI 163 (168)
T ss_pred CHHHHHHHHHHHH
T ss_conf 6899999999999
No 377
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=1.6e-13 Score=110.02 Aligned_cols=108 Identities=28% Similarity=0.388 Sum_probs=66.8
Q ss_pred EECCCCCHHHHHHHHHCCCCCC--CHHH---------------HHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHH
Q ss_conf 4035642567887652012110--0024---------------5665420231142034069998171104444430001
Q gi|255764471|r 209 VGRPNVGKSTLINRLLGYNRLL--TGSQ---------------SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESL 271 (470)
Q Consensus 209 ~G~pN~GKStl~N~l~~~~r~i--vs~~---------------~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~ 271 (470)
+|+..+||+||..+|+-..-.+ .+++ -|.|..+--..+.|+++.|.|||||| +++..-
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPG-----HvDF~~ 75 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPG-----HVDFTG 75 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC-----CCCHHH
T ss_conf 989988888999999996599875761438971467809999739973221388988998999992979-----751489
Q ss_pred HHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 11000121001201205998455321220212232000000357665589442233
Q gi|255764471|r 272 EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 (470)
Q Consensus 272 E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli 327 (470)
| ..++++-+|.+++|+||.+|+..|++.+.+++.+++.|.|+++||+|..
T Consensus 76 E------V~~aLrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~ 125 (670)
T PRK12740 76 E------VERALRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRA 125 (670)
T ss_pred H------HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9------9999998686899997899973789999999998799969999797899
No 378
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.53 E-value=1.9e-13 Score=109.62 Aligned_cols=150 Identities=20% Similarity=0.322 Sum_probs=99.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589-85302238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|-++||||||++|+++..- ...+ |-+.-|.....+..++. .+.+.||+|-.... .+ ...
T Consensus 1 ~~KivllGd~~VGKTsli~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~------~l---~~~ 69 (165)
T cd01865 1 MFKLLIIGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR------TI---TTA 69 (165)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHH
T ss_conf 98999999999688999999924988--99768876378799999999999999999699983455------44---154
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHH---HHC---CCCCCCCCHHHHCCCHHHH----HHHHH-HHHCCCCCEEEHHH
Q ss_conf 9987798999975988776234455533---210---2332222056522301210----01245-53122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSF---LRK---KNIPIIIVSNKMDTRIAQR----NFYEI-YSLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~---lr~---~~~~~ilv~NK~D~~~~~~----~~~e~-~~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+ . ..+-.| ++. .+.|+++|.||+|+..... ...++ .++|+ +.+.+||+
T Consensus 70 y~~~a~~~ilvydit~~~S-f-~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAk 146 (165)
T cd01865 70 YYRGAMGFILMYDITNEES-F-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAK 146 (165)
T ss_pred HHHCCCEEEEEECCCCHHH-H-HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 4113544899851788799-9-9999999999986898725999602423555188999999999998699-79997689
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
+|.|++++.+.+++.+-+
T Consensus 147 ~~~nV~e~F~~l~~~i~~ 164 (165)
T cd01865 147 ENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 890889999999999962
No 379
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.53 E-value=4.4e-13 Score=107.13 Aligned_cols=150 Identities=16% Similarity=0.241 Sum_probs=94.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEE-EECCCCCCEEEEEEEEEEECC------------EEEEEEECCCCCCCCHHHH
Q ss_conf 508999718988788899998588501-025898530223899999899------------8999996588420763689
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMA-VVGNHPGITRDRLYGQAIING------------VIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~a-iv~~~~g~Trd~~~~~~~~~~------------~~~~liDT~G~~~~~~~~~ 68 (470)
+.+|+++|-++||||||+.|+++.+-. -..++.| -|.....+.+.. ..+.+.||+|-.. +
T Consensus 4 ~~KivvvGd~~VGKTsli~r~~~~~f~~~y~~Tig--~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe~-----~ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVG--IDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-----F 76 (180)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC--EEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHH-----H
T ss_conf 88999999999888999999961958998688432--2688999998476554445788589999998988630-----4
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH---HC----CCCCCCCCHHHHCCCHHHH----HHHHHH-HH
Q ss_conf 999999999999877989999759887762344555332---10----2332222056522301210----012455-31
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RK----KNIPIIIVSNKMDTRIAQR----NFYEIY-SL 136 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~l---r~----~~~~~ilv~NK~D~~~~~~----~~~e~~-~l 136 (470)
..+ ....+..||.+++|.|..+.-+- ..+.+|+ +. .+.|+++|.||+|+..... ...++. ++
T Consensus 77 -~~l---~~~~~~~a~~~ilvydit~~~Sf--~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~ 150 (180)
T cd04127 77 -RSL---TTAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred -HHH---HHHHHHHHCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHC
T ss_conf -788---89998754365899968988999--989999999998546689857875032366750888999999999984
Q ss_pred CCCCCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 22220100111022201479999998610
Q gi|255764471|r 137 DFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 137 g~~~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
|+ +.+.+||++|.|++++.+.+...+-+
T Consensus 151 ~~-~~~E~SAk~g~nV~e~F~~l~~~i~~ 178 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CC-EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99-79998037791989999999999997
No 380
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.53 E-value=1.7e-13 Score=109.83 Aligned_cols=147 Identities=23% Similarity=0.373 Sum_probs=97.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||+.|++..+- ..++.-|.-|.....+.++|.. +.+.||+|-... ..+ ....+
T Consensus 2 ~KvvlvGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~k~~~i~~~~~~l~iwDtaG~e~~------~~l---~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY------SAM---RDQYM 70 (162)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCC------CHH---HHHHH
T ss_conf 3999989999889999999983928--875688555279999999999999999979986011------147---89871
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHH---HH----CCCCCCCCCHHHHCCCHHHHH---HHHH-HHHCCCCCEEEHHHCC
Q ss_conf 87798999975988776234455533---21----023322220565223012100---1245-5312222010011102
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSF---LR----KKNIPIIIVSNKMDTRIAQRN---FYEI-YSLDFKEIVEISAEHD 149 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~---lr----~~~~~~ilv~NK~D~~~~~~~---~~e~-~~lg~~~~i~iSA~~g 149 (470)
..||.+++|.|..+.-+- ..+-.| ++ ....|+++|.||+|+...... ..++ .++|. ..+-+||++|
T Consensus 71 ~~a~~~ilvydvt~~~Sf--~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~r~V~~~e~~~~a~~~~~-~f~E~SAk~~ 147 (162)
T cd04138 71 RTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred CCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 578779999617988999--9899999999985488885499997653564555889999999998099-8999738998
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+.+.+
T Consensus 148 ~nV~e~F~~l~~~I 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 59899999999963
No 381
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=99.53 E-value=2.7e-14 Score=115.22 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=90.1
Q ss_pred HHCCEEEEEECCCCCCCH--HHHHHHHHHHCCCCCCCCCHHHHCCCHH-HHHHHHHHHHCCC-CCEEEHHHCCCCCHHHH
Q ss_conf 877989999759887762--3445553321023322220565223012-1001245531222-20100111022201479
Q gi|255764471|r 81 NEAHLILFLIDSKAGITP--YDHAITSFLRKKNIPIIIVSNKMDTRIA-QRNFYEIYSLDFK-EIVEISAEHDLGTSELH 156 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~--~D~~i~~~lr~~~~~~ilv~NK~D~~~~-~~~~~e~~~lg~~-~~i~iSA~~g~Gi~~L~ 156 (470)
...|.++.|+-......+ .|+.++ .....+.+.++|+||+|+... +....+...+..+ +++.+||.++.|+++|.
T Consensus 110 ANiD~v~IV~s~~~~fn~~rieRyLv-~a~~~g~~pvivLnK~DL~~d~~~~~~~~~~~~~g~~v~~vSa~~~~gl~~L~ 188 (353)
T PRK01889 110 ANVDTVFIVCSLNHDFNLRRIERYLA-LAWESGAEPVVVLTKADLCEDVEEKIAEVEALAPGVPVLAVNALDGEGVDALQ 188 (353)
T ss_pred ECCCEEEEEECCCCCCCHHHHHHHHH-HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 71768999952899979789999999-99986996799996655667999999999985599759999789984789999
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHH-
Q ss_conf 9999986101234511221000011111122211123343323444303886403564256788765201211000245-
Q gi|255764471|r 157 SVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS- 235 (470)
Q Consensus 157 ~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~- 235 (470)
..+..- -.++++|.+.||||||+|+|++++..-|+++-
T Consensus 189 ~~l~~G-----------------------------------------kT~vl~G~SGVGKSTLiN~L~g~~~~~t~~is~ 227 (353)
T PRK01889 189 AWLKPG-----------------------------------------KTVALLGSSGVGKSTLVNALLGEEVQKTGAVRE 227 (353)
T ss_pred HHHHCC-----------------------------------------CEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCC
T ss_conf 986349-----------------------------------------789997788866999998756534534415000
Q ss_pred ------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf ------6654202311420340699981711044
Q gi|255764471|r 236 ------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 236 ------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
.||+-. ..+...+. =.+|||||+|.
T Consensus 228 ~~~kGRHTTt~r--eL~~lp~G-g~lIDTPG~Re 258 (353)
T PRK01889 228 DDSKGRHTTTHR--ELHPLPSG-GLLIDTPGMRE 258 (353)
T ss_pred CCCCCEECCCEE--EEEECCCC-CEEEECCCCCC
T ss_conf 369950012406--89994899-58973798654
No 382
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.52 E-value=3.9e-13 Score=107.47 Aligned_cols=150 Identities=17% Similarity=0.267 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530-22389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|.++||||||++|++...- ..+.+..|. -|.....+.+++.. +.+.||+|-.. + ..+ ....+
T Consensus 2 KivlvGd~~VGKTsLi~r~~~~~f-~~~~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~-----~-~~l---~~~y~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER-----Y-EAM---SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH-----H-HHH---HHHHH
T ss_conf 899999699879999999985979-9899787630588999999999999999991999731-----2-355---79883
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHH-----CCCCCCCCCHHHHCCCHHH--------HHHHHHH-HHCCCCCEEEHH
Q ss_conf 8779899997598877623445553321-----0233222205652230121--------0012455-312222010011
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIPIIIVSNKMDTRIAQ--------RNFYEIY-SLDFKEIVEISA 146 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr-----~~~~~~ilv~NK~D~~~~~--------~~~~e~~-~lg~~~~i~iSA 146 (470)
..||++++|.|..+.-+- ..+..|+. ..+.|+++|.||+|+...+ +...+|. ++|. ..+.+||
T Consensus 72 ~~a~~~ilvydit~~~Sf--~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~-~~~E~SA 148 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSF--ERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSS 148 (193)
T ss_pred CCCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCC-EEEEECC
T ss_conf 477445788306987999--9899999999974899997999774663220166644689999999998099-6999838
Q ss_pred HCCCCCHHHHHHHHHHHHHC
Q ss_conf 10222014799999986101
Q gi|255764471|r 147 EHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~~~~~~ 166 (470)
++|.|++++.+.+.+.+-..
T Consensus 149 ktg~nV~e~F~~la~~i~~~ 168 (193)
T cd04118 149 KTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 98939899999999999976
No 383
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=3.3e-13 Score=107.94 Aligned_cols=152 Identities=20% Similarity=0.306 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||+.|++..+- ...+.-|.-|.....+.+++.. +.+.||+|-.. + ..+ ....+.
T Consensus 1 KivviGd~gVGKTsli~r~~~~~F--~~~y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~-----~-~~l---~~~~~r 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-----Y-TAL---RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCC-----H-HHH---HHHHHC
T ss_conf 989999899878999999962979--98869972478899999999999999998999731-----1-678---899823
Q ss_pred HCCEEEEEECCCCCCCHHHH-HHHHHHHC------CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHCC
Q ss_conf 77989999759887762344-55533210------23322220565223012100----1245-5312222010011102
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDH-AITSFLRK------KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEHD 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~-~i~~~lr~------~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~g 149 (470)
.||.+++|.|..+.-+-... ...+++++ .+.|++||.||+|+...... ..++ .++|. ..+.+||++|
T Consensus 70 ~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 676589997279778999999999999998533799952895145535033057899999999998099-8999735888
Q ss_pred CCCHHHHHHHHHHHHHCC
Q ss_conf 220147999999861012
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~ 167 (470)
.|++++.+.+...+.+..
T Consensus 149 ~nV~e~F~~l~~~i~~~~ 166 (190)
T cd04144 149 VNVERAFYTLVRALRQQR 166 (190)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 097999999999999877
No 384
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=1.2e-13 Score=110.96 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHCCCCEEE--------------------EC------CE
Q ss_conf 4443038864035642567887652012--11000245665420231142--------------------03------40
Q gi|255764471|r 200 ISKPLRIAVVGRPNVGKSTLINRLLGYN--RLLTGSQSGITRDSVSISWN--------------------WK------NH 251 (470)
Q Consensus 200 ~~~~i~~~~~G~pN~GKStl~N~l~~~~--r~ivs~~~GtTrD~i~~~~~--------------------~~------~~ 251 (470)
....++|+.+|+...|||||+-+|+|.+ |..-.-.-|.|.|.=+..+. .. .+
T Consensus 5 ~~p~vNIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 84 (410)
T PRK04000 5 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLR 84 (410)
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 89952699996517869999988739754238878864881210510100120545554441353023344455544331
Q ss_pred EEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCC-HHHHHHHHHHHHCCC-CCCCEEEECCCCCCC
Q ss_conf 699981711044444300011100012100120120599845532122-021223200000035-766558944223354
Q gi|255764471|r 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFNTG-HAVVLALNKWDMVSD 329 (470)
Q Consensus 252 ~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~-~~qd~~i~~~i~~~~-k~~iiv~NK~Dli~~ 329 (470)
.|.|||+|| +|.|.-+ .+.-...+|.+++|+||.+|+ ..|....+..+.-.| +.+|+++||+|++++
T Consensus 85 ~is~VD~PG----------He~fi~n-Mi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~ 153 (410)
T PRK04000 85 RVSFVDAPG----------HETLMAT-MLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 153 (410)
T ss_pred EEEEEECCC----------HHHHHHH-HHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 699997988----------7999999-98402126679999865778767714999999998099837999962567898
Q ss_pred HHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1555666542013332--0048831112345333485899999999999
Q gi|255764471|r 330 KLNLLQDLRTKAIKNL--PQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~--~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
+.. .+..+++.+.+ .++..+||+++||.+|.|++.|++++.+...
T Consensus 154 e~~--~~~~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~ 200 (410)
T PRK04000 154 EKA--LENYEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIP 200 (410)
T ss_pred HHH--HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 999--99999999987067656899999647778894089998986277
No 385
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3e-14 Score=114.93 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=89.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHH---CCCEEE--------ECCC------CCCEEEEEEEEEEECC-EEEEEEECCCCCCC
Q ss_conf 5089997189887888999985---885010--------2589------8530223899999899-89999965884207
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLV---KKKMAV--------VGNH------PGITRDRLYGQAIING-VIFNIVDTAGIADG 63 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~---~~~~ai--------v~~~------~g~Trd~~~~~~~~~~-~~~~liDT~G~~~~ 63 (470)
+-.|+|+|.--.||+||.-+|+ |.-..+ +.|+ -|.|-..--..+.|.+ +.++||||||..+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD- 88 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD- 88 (697)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCC-
T ss_conf 4079999604788077889999875975778556678654788788986697786405689970865899957997353-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHH
Q ss_conf 6368999999999999987798999975988776234455533210233222205652230121
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~ 127 (470)
|..++ .+++.-+|.++.|+||.+|+.++.+.+++++.+.+.|.++++||+|....+
T Consensus 89 ----Ft~EV----~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 89 ----FTIEV----ERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred ----CHHHH----HHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf ----47787----998886165099998878830037999999865599759999784335567
No 386
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.52 E-value=6.7e-14 Score=112.63 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=98.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
.++|.++|-++||||||+++++...= .....-|.-|.....+.+++.. +.+||||| .|.|...+.+
T Consensus 5 k~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaG----------qe~f~~l~~~ 72 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSG----------SPYYDNVRPL 72 (182)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CHHCCCCCHH
T ss_conf 48999999999899999999983999--99868735322689999999999999996898----------6201221255
Q ss_pred EEEECCEEEEEECCCCCCC--HHH-HHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHH--------HCCCCC-C
Q ss_conf 0120120599845532122--021-2232000000--357665589442233541555666542--------013332-0
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPF--EKQ-DLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRT--------KAIKNL-P 346 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~--~~q-d~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~--------~~~~~~-~ 346 (470)
..+.+|++++|.|.++.- ... +.|+ ..+.+ .+.|+++|.||.||-++.... .++.. +..+.+ .
T Consensus 73 -~y~~~~~~ilvydit~~~Sf~~v~~~W~-~ei~~~~~~~~iiLVGnK~DLr~~~~~~-~~l~~~~~~~Vs~eeg~~~A~ 149 (182)
T cd04172 73 -SYPDSDAVLICFDISRPETLDSVLKKWK-GEIQEFCPNTKMLLVGCKSDLRTDLTTL-VELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHCCCCCCCHHHHHHHHH
T ss_conf -5127878999964897788999999999-9999868799889996171012441456-677645677869999999999
Q ss_pred CCCCCCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 04883111234533348-589999999999
Q gi|255764471|r 347 QIGDIYINTISGRTGEG-LDDLMVSVLEIN 375 (470)
Q Consensus 347 ~~~~~~i~~iSA~~g~g-i~~l~~~i~~~~ 375 (470)
.+...+.+.+||+++.| ++++|+.+.++.
T Consensus 150 ~~g~~~y~EtSAk~~~n~V~e~F~~a~~a~ 179 (182)
T cd04172 150 QIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 769979999170789959899999999998
No 387
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.9e-14 Score=112.52 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=85.0
Q ss_pred EEEEECCCCCCHHHHHHHHH--CC-------------CEEEECCCC------CCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 89997189887888999985--88-------------501025898------5302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV--KK-------------KMAVVGNHP------GITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~--~~-------------~~aiv~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
+-||+-.|-+||+||--.|+ |. +..-+|||- |..--.-...++|.|+.++|+||||-.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCCC
T ss_conf 03688568888511889999723034305501222577634227788887568558765787603884886147998654
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf 7636899999999999998779899997598877623445553321023322220565223
Q gi|255764471|r 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 (470)
Q Consensus 63 ~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~ 123 (470)
.+++ |.+.+--+|.++.|+|+-.|+-++.+.+.+..|-.+.|++-.+||+|.
T Consensus 94 FSED---------TYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR 145 (528)
T COG4108 94 FSED---------TYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145 (528)
T ss_pred CCHH---------HHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 3236---------789998641046898603586688999999985059846997502365
No 388
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.52 E-value=8.7e-14 Score=111.84 Aligned_cols=144 Identities=26% Similarity=0.274 Sum_probs=66.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|.++|-.|+|||||+++|.+....-+.++.|.. ...+.+++..|.+.|.||-. .+... -....+.+
T Consensus 1 sililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~-----~~R~l----W~~Y~~~~ 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGA-----NFRGI----WVNYYAEA 67 (167)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCH-----HHHHH----HHHHCCCC
T ss_conf 9899900899889999998289987650877731----79999899999999899877-----88899----99873477
Q ss_pred CEEEEEECCCCCC--CHHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHHC----CC----CCEEEHHHC
Q ss_conf 9899997598877--623445553321---0233222205652230121--0012455312----22----201001110
Q gi|255764471|r 84 HLILFLIDSKAGI--TPYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSLD----FK----EIVEISAEH 148 (470)
Q Consensus 84 D~il~vvD~~~g~--~~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~lg----~~----~~i~iSA~~ 148 (470)
|.|+||||+.+.- ...-.++.+.|. -.++|+++++||.|.+..- ..+.+...|. -. .+.++||.+
T Consensus 68 ~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~t 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEEC
T ss_conf 65799985575889999999999996588778995999988657615899999998819742408998637999576444
Q ss_pred CCC------CHHHHHHHH
Q ss_conf 222------014799999
Q gi|255764471|r 149 DLG------TSELHSVIF 160 (470)
Q Consensus 149 g~G------i~~L~~~i~ 160 (470)
|.| +.|=+++++
T Consensus 148 G~G~~~~~~l~eGl~WL~ 165 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 888787663154998986
No 389
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.52 E-value=1.8e-13 Score=109.70 Aligned_cols=150 Identities=21% Similarity=0.314 Sum_probs=99.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|-++||||||+.|+++..- ...+.-|.-|.....+.+++. .+.+.||+|-.... .+ ....+
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~f--~~~~~pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~~~------~l---~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT------AM---RDQYM 71 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHHH
T ss_conf 6999999999779999999970989--9875884222036999999999999999788851357------45---15564
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHH---H---H-CCCCCCCCCHHHHCCCHHHHHH----HHH-HHHCCCCCEEEHHHC
Q ss_conf 87798999975988776234455533---2---1-0233222205652230121001----245-531222201001110
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSF---L---R-KKNIPIIIVSNKMDTRIAQRNF----YEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~---l---r-~~~~~~ilv~NK~D~~~~~~~~----~e~-~~lg~~~~i~iSA~~ 148 (470)
..||.+++|.|..+.-+-+ .+..| + + ..+.|+++|.||+|+....... .++ .++|. ..+.+||++
T Consensus 72 r~a~~~ilvydvt~~~Sf~--~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~-~f~EtSAk~ 148 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQ--EASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAAL 148 (172)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 2786568873168888999--9999999999972889986899850456676188899999999998599-799974788
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 222014799999986101
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~ 166 (470)
|.|++++.+.+.+.+...
T Consensus 149 ~~nV~e~F~~l~~~i~~k 166 (172)
T cd04141 149 RHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 828899999999999863
No 390
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=2e-13 Score=109.36 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=96.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589-853022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|-++||||||++|+++..- ...+ |-+..|.....+.+++.. +.+.||+|-..... + +..
T Consensus 7 ~~KivllGd~~VGKTsli~r~~~~~f--~~~~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~------l---~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS------I---TQS 75 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C---HHH
T ss_conf 98999999899799999999985989--998677412478999999999999999998999844451------5---577
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHH---HC---CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHH
Q ss_conf 99877989999759887762344555332---10---23322220565223012100----12455-3122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFL---RK---KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~l---r~---~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+- ..+-.|+ +. ...|+++|.||+|+...... ..++. +.|+ +.+.+||+
T Consensus 76 ~~~~a~~~ilvydvt~~~Sf--~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAk 152 (169)
T cd04114 76 YYRSANALILTYDITCEESF--RCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAK 152 (169)
T ss_pred HHHCCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 74236645998148988899--9999999999986898863897311343454178899999999998899-99998689
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0222014799999986
Q gi|255764471|r 148 HDLGTSELHSVIFKIF 163 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~ 163 (470)
+|.|++++.+.+...+
T Consensus 153 tg~nV~e~F~~la~~l 168 (169)
T cd04114 153 ESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 8808899999999987
No 391
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=2.8e-13 Score=108.46 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=99.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEEEEEEEEC-C--EEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589-853022389999989-9--89999965884207636899999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNH-PGITRDRLYGQAIIN-G--VIFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~-~g~Trd~~~~~~~~~-~--~~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
++|+++|.++||||||++|++...- ..++ |-..-|.....+.+. + ..+.+.||+|-... ..+ +..
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~F--~~~y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~~------~~l---~~~ 69 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF--SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF------GGM---TRV 69 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCC------CCC---HHH
T ss_conf 9799999999789999999982999--99888875677899899967981999999868998322------200---375
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHH---H----H---CCCCCCCCCHHHHCCCHHHH----HHHHHH-HHCCCCCEE
Q ss_conf 9987798999975988776234455533---2----1---02332222056522301210----012455-312222010
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSF---L----R---KKNIPIIIVSNKMDTRIAQR----NFYEIY-SLDFKEIVE 143 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~---l----r---~~~~~~ilv~NK~D~~~~~~----~~~e~~-~lg~~~~i~ 143 (470)
.+..|+++++|.|..+.-+- ..+..| + + ....|+++|.||+|+..... .+.++. +.++...+.
T Consensus 70 y~~~a~~~ilvydvt~~~Sf--~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~~~~~~~~E 147 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTF--EAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred HCCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 55577647999827988999--9899999999998621378987189986655641125689999999999779980999
Q ss_pred EHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 011102220147999999861012
Q gi|255764471|r 144 ISAEHDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 144 iSA~~g~Gi~~L~~~i~~~~~~~~ 167 (470)
+||++|.|++++.+.+...+-+..
T Consensus 148 tSAktg~nV~e~F~~l~~~i~~~~ 171 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 779999498999999999998665
No 392
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.51 E-value=3.6e-13 Score=107.68 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998-998--999996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~-~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||++|+++..- ...+.-|.-+........ +|. .+.+.||+|-.... .+. ....
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~------~l~---~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD------RLR---PLSY 70 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCC------CCH---HHHH
T ss_conf 899999499769999999963989--99758966479999999549989999999699971105------343---4453
Q ss_pred HHCCEEEEEECCCCCCCHHHHH--HHHHHHC--CCCCCCCCHHHHCCCHHHH--------HHHHHH-HHCCCCCEEEHHH
Q ss_conf 8779899997598877623445--5533210--2332222056522301210--------012455-3122220100111
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHA--ITSFLRK--KNIPIIIVSNKMDTRIAQR--------NFYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~--i~~~lr~--~~~~~ilv~NK~D~~~~~~--------~~~e~~-~lg~~~~i~iSA~ 147 (470)
..||++++|.|..+.-+-+... -...++. .+.|+++|.||+|+..... ...++. .+|....+.+||+
T Consensus 71 ~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y~EtSAk 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 00348889503687677999999999999986899997999987221221223765789999999998599789995768
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
+|.|++++.+.+.+.+-+
T Consensus 151 ~g~nV~e~F~~l~~~il~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 892989999999999985
No 393
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.51 E-value=2.6e-13 Score=108.60 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=96.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|+++|.++||||||+.+++...- ...+..|.-|.....+.+++.+ +.|.||+|-.... .+ ....+
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~------~~---~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD------RL---RPLSY 70 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHHH
T ss_conf 0999999899669999999970989--9984784368999999999999999999777661323------24---04431
Q ss_pred HHCCEEEEEECCCCCCCHHHH-H-HHHHHHC--CCCCCCCCHHHHCCCHHHHHH----------------HHH-HHHCCC
Q ss_conf 877989999759887762344-5-5533210--233222205652230121001----------------245-531222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-A-ITSFLRK--KNIPIIIVSNKMDTRIAQRNF----------------YEI-YSLDFK 139 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~-i~~~lr~--~~~~~ilv~NK~D~~~~~~~~----------------~e~-~~lg~~ 139 (470)
..||++++|.|..+.-+-.+. + ....++. .+.|+++|.||+|+....... .++ .++|.-
T Consensus 71 ~~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 48878999986598799999999999999972989989999872433433234566654025566899999999974997
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 201001110222014799999986
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
..+-+||++|.|++++.+.+.+..
T Consensus 151 ~f~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899976899979899999999986
No 394
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.51 E-value=1.5e-13 Score=110.16 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=98.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853-022389999989989--999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|-++||||||++|+++.+- ...+.-| --|.....+..++.+ +.+.||+|-..... + ...
T Consensus 4 ~~KivlvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~--l-------~~~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS--I-------TRS 72 (168)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--C-------HHH
T ss_conf 88999999899788999999910989--998789850788999999999999999997999733462--5-------588
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C---CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHH
Q ss_conf 998779899997598877623445553321---0---23322220565223012100----1245-53122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR---K---KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~---~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|....-+ . ..+..|+. . .+.|+++|.||+|+...... ..++ .++|+ ..+.+||+
T Consensus 73 ~~~~a~~~ilvydit~~~S-f-~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk 149 (168)
T cd01866 73 YYRGAAGALLVYDITRRET-F-NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSAK 149 (168)
T ss_pred HHHHHCEEEEECCCCCHHH-H-HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 8664368999344587799-9-9999999999986799965998434235454077899999999998699-99997678
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 022201479999998610
Q gi|255764471|r 148 HDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~~ 165 (470)
+|.|++++...+.+.+-+
T Consensus 150 ~~~nV~~~F~~l~~~i~~ 167 (168)
T cd01866 150 TASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 880889999999999973
No 395
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.51 E-value=6.8e-14 Score=112.58 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=93.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 0388640356425678876520121100024566542023114203406--99981711044444300011100012100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~~ 281 (470)
+||+++|-++||||+|+++++..+=. .+. -+|-+.....+..+|.. +.++||||- +.+ +
T Consensus 1 ~KivllGd~~VGKTsl~~Rf~~~~F~--~~~-~pt~~~~~~~~~vdg~~~~l~i~DTaG~----------~~~------~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLE-SPEGGRFKKEVLVDGQSHLLLIRDEGGA----------PDA------Q 61 (158)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC--CCC-CCCCCEEEEEEEECCEEEEEEEEECCCC----------CCH------H
T ss_conf 99999996998799999999809478--744-4664417999999999999999958998----------343------3
Q ss_pred EEECCEEEEEECCCCCCCHHHHH-HHHHHHHC----CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12012059984553212202122-32000000----35766558944223354155566654201333200488311123
Q gi|255764471|r 282 SVRTCETTIVLLDATIPFEKQDL-RIVDSVFN----TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~~~qd~-~i~~~i~~----~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 356 (470)
.++.||.+++|.|.++.-+-++. .+...+.+ ...|+|+|.||.|+-......... ++.++....+..++.+.+
T Consensus 62 ~~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~--~e~~~~a~~~~~~~f~Et 139 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD--ARARQLCADMKRCSYYET 139 (158)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCH--HHHHHHHHHCCCCEEEEE
T ss_conf 321499899999889888999999999999985597899689998770036577614799--999999985699889990
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 45333485899999999
Q gi|255764471|r 357 SGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 357 SA~~g~gi~~l~~~i~~ 373 (470)
||++|.||+++|..+.+
T Consensus 140 SAk~~~NV~~~F~~~~~ 156 (158)
T cd04103 140 CATYGLNVERVFQEAAQ 156 (158)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 17999598999999996
No 396
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.51 E-value=9.8e-14 Score=111.49 Aligned_cols=149 Identities=23% Similarity=0.235 Sum_probs=98.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501025898530-2238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|-++||||||++|++..+- ..+.+.|. -|.....+.+++. ++.+.||+|-.... .+ ...
T Consensus 2 ~~KivlvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~------~~---~~~ 70 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR------AV---TRS 70 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---CHH
T ss_conf 49999999999579999999912988--99999974468899999999999999999899985444------25---211
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C---CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHH
Q ss_conf 998779899997598877623445553321---0---23322220565223012100----12455-3122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR---K---KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~---~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~ 147 (470)
....||++++|.|....-+- ..+-.|+. + .+.|+++|.||+|+...... ..++. +.|+ ..+.+||+
T Consensus 71 ~~~~a~~~ilvydvt~~~Sf--~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk 147 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSAK 147 (166)
T ss_pred HEECCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 14315465997258747679--9999999999985699975870340157444389999999999998699-89998658
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 02220147999999861
Q gi|255764471|r 148 HDLGTSELHSVIFKIFK 164 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~~~ 164 (470)
+|.|++++...+.+.+-
T Consensus 148 ~g~nV~e~F~~l~~~i~ 164 (166)
T cd04122 148 TGENVEDAFLETAKKIY 164 (166)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 78088999999999997
No 397
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.51 E-value=3.9e-13 Score=107.45 Aligned_cols=151 Identities=19% Similarity=0.268 Sum_probs=97.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|-++||||||+.|+++..- ..++.-|.-|.....+..+|.. +.+.||+|-... ..++ .....
T Consensus 3 KivllGd~~VGKTsL~~rf~~~~F--~~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~------~~l~---~~~y~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDY------NRLR---PLSYR 71 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCC------CHHH---HHHHC
T ss_conf 999989999779999999965989--998678535899999999998999999979997654------2468---98726
Q ss_pred HCCEEEEEECCCCCCCHHH--HHHHHHHHC--CCCCCCCCHHHHCCCHHHHH-----------HH---HH-HHHCCCCCE
Q ss_conf 7798999975988776234--455533210--23322220565223012100-----------12---45-531222201
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD--HAITSFLRK--KNIPIIIVSNKMDTRIAQRN-----------FY---EI-YSLDFKEIV 142 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D--~~i~~~lr~--~~~~~ilv~NK~D~~~~~~~-----------~~---e~-~~lg~~~~i 142 (470)
.||++++|.|..+.-+-.+ ..-...++. .+.|+++|.||+|+...+.. .. ++ .++|....+
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~ 151 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 78757999978987899999999999999868499889999863202122233330246777799999999977997899
Q ss_pred EEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 00111022201479999998610
Q gi|255764471|r 143 EISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 143 ~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
-+||++|.|++++.+.+.+.+-+
T Consensus 152 EtSAk~~~nV~e~F~~~~~~il~ 174 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHHC
T ss_conf 94789880989999999999808
No 398
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=9e-14 Score=111.76 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=96.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853-02238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+.+|+++|.++||||||++|++...- ...+.-| .-|.....+..++. .+.+.||+|-..... + ...
T Consensus 3 ~~Kiv~lGd~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~--l-------~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF--SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT--I-------TQS 71 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--C-------CHH
T ss_conf 89999999999589999999964999--998799754378999999999999999998999834453--5-------075
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHH---HHC---CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHHH
Q ss_conf 9987798999975988776234455533---210---23322220565223012100----12455-3122220100111
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSF---LRK---KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISAE 147 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~---lr~---~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA~ 147 (470)
.+..||++++|.|..+.-+- ..+..| +++ .+.|+++|.||+|+...... ..++. ++|....+.+||+
T Consensus 72 ~~~~a~~~ilvydit~~~Sf--~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~~~~~~a~~~~~~~~~E~SAk 149 (165)
T cd01864 72 YYRSANGAIIAYDITRRSSF--ESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred HEECCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 52215666997138998999--9999999999987699984388877237686289999999999998399769997888
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 022201479999998
Q gi|255764471|r 148 HDLGTSELHSVIFKI 162 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~ 162 (470)
+|.|++++.+.+.+.
T Consensus 150 ~~~nV~e~F~~la~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 581989999999984
No 399
>KOG2485 consensus
Probab=99.50 E-value=9.2e-14 Score=111.68 Aligned_cols=159 Identities=24% Similarity=0.352 Sum_probs=102.3
Q ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--HHHHH-HHHCCCCCEE--EHHHCCC
Q ss_conf 99999877989999759887762344555332102332222056522301210--01245-5312222010--0111022
Q gi|255764471|r 76 TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--NFYEI-YSLDFKEIVE--ISAEHDL 150 (470)
Q Consensus 76 ~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--~~~e~-~~lg~~~~i~--iSA~~g~ 150 (470)
...-+.-.|+|+-|=|||-+++....-+-+.+. .+|-|+|+||+|+....+ ...++ ..-+...++. ++.....
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485 40 IQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 986556553799961134677655488897337--775499984010368333159999987620344256432365530
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC-----
Q ss_conf 201479999998610123451122100001111112221112334332344430388640356425678876520-----
Q gi|255764471|r 151 GTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG----- 225 (470)
Q Consensus 151 Gi~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~----- 225 (470)
++..++..+.....+. ...........++-++|-||||||||+|++..
T Consensus 118 ~v~~l~~il~~~~~~l---------------------------~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk 170 (335)
T KOG2485 118 QVSPLLKILTILSEEL---------------------------VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRK 170 (335)
T ss_pred CCCCHHHHHHHHHHHH---------------------------HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 1010899999999777---------------------------8763146870269997389888088999999887653
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECC-EEEEEEECHHCCCC
Q ss_conf 1211000245665420231142034-06999817110444
Q gi|255764471|r 226 YNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 (470)
Q Consensus 226 ~~r~ivs~~~GtTrD~i~~~~~~~~-~~~~liDTaGirkk 264 (470)
...+.|+..||.||+ |...|.+-. ..+.++||||+--.
T Consensus 171 ~k~a~vG~~pGVT~~-V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485 171 KKAARVGAEPGVTRR-VSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred CCCEECCCCCCCEEE-EHHHEEECCCCCEEEECCCCCCCC
T ss_conf 000010688885223-121257436896588668875798
No 400
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.50 E-value=1e-13 Score=111.31 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=98.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530-2238999998998--99999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|.++||||||++|++...- ..++.-|. -|.....+..++. .+.+-||+|-.... .+ +...
T Consensus 7 ~KIvllGd~~VGKTsLi~r~~~~~F--~~~y~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~------sl---~~~y 75 (209)
T PTZ00132 7 FKLILVGDGGVGKTTFVKRHLTGEF--EKKYIATLGVEVHPLKFYTNRGKICFNVWDTAGQEKFG------GL---RDGY 75 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---CCHH
T ss_conf 8999999999678999999971996--99877760279899999999999999999899974455------66---5144
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHH---C--CCCCCCCCHHHHCCCHHHHHH--HHHH-HHCCCCCEEEHHHCCCC
Q ss_conf 98779899997598877623445553321---0--233222205652230121001--2455-31222201001110222
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLR---K--KNIPIIIVSNKMDTRIAQRNF--YEIY-SLDFKEIVEISAEHDLG 151 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr---~--~~~~~ilv~NK~D~~~~~~~~--~e~~-~lg~~~~i~iSA~~g~G 151 (470)
...|+++++|.|..+.-+- ..+-.|++ + .+.|++||.||+|+....... .+|. +.|+ ..+-+||++|.|
T Consensus 76 yr~a~~~ilVfDit~~~SF--~~l~~W~~ei~~~~~~ipivLVGNK~DL~~r~V~~~~~~~a~~~~~-~f~EtSAKtg~N 152 (209)
T PTZ00132 76 YIKGQCAIIMFDVTSRITY--KNVPNWHRDITRVCENIPIVLVGNKVDVKDRQVKAKQITFHRKKNL-QYYDISAKSNYN 152 (209)
T ss_pred HCCCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC-EEEEEECCCCCC
T ss_conf 2489889998437887899--9999999999986899878999762322413557999999998799-899972689939
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 014799999986101
Q gi|255764471|r 152 TSELHSVIFKIFKQK 166 (470)
Q Consensus 152 i~~L~~~i~~~~~~~ 166 (470)
++++...+...+-..
T Consensus 153 V~e~F~~Lar~il~~ 167 (209)
T PTZ00132 153 FEKPFLWLARRLAND 167 (209)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 799999999998479
No 401
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=4e-13 Score=107.36 Aligned_cols=148 Identities=26% Similarity=0.284 Sum_probs=94.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530223899999899--89999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING--VIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||++|+++.+- ...+| +|-+.....+.+++ ..+.+.||+|-.... .+ ....+.
T Consensus 2 Kiv~vGd~~VGKTsli~r~~~~~F--~~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~------~~---~~~~~~ 69 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQDR------AN---LAAEIR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCCCC------HH---HHHHHC
T ss_conf 899999999899999999984978--88777-6345689999988909999999899872302------45---798736
Q ss_pred HCCEEEEEECCCCCCCHHHHH--HHHHHH--CCCCCCCCCHHHHCCCHHHHHH---HHH----HHH-CCCCCEEEHHHCC
Q ss_conf 779899997598877623445--553321--0233222205652230121001---245----531-2222010011102
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDHA--ITSFLR--KKNIPIIIVSNKMDTRIAQRNF---YEI----YSL-DFKEIVEISAEHD 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~~--i~~~lr--~~~~~~ilv~NK~D~~~~~~~~---~e~----~~l-g~~~~i~iSA~~g 149 (470)
.||++++|.|..+.-+-.... -...++ ..+.|+++|.||+|+....... .+. ..+ .+...+-+||++|
T Consensus 70 ~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg 149 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89889999708987789999999999999868999689999886540025033588999999997307488999065889
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+.+.+
T Consensus 150 ~nV~e~F~~~~k~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 19899999999998
No 402
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-13 Score=108.91 Aligned_cols=192 Identities=21% Similarity=0.211 Sum_probs=131.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCC-----------CCCCHH----HHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCC
Q ss_conf 038864035642567887652012-----------110002----45665420231142034069998171104444430
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYN-----------RLLTGS----QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~-----------r~ivs~----~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~ 268 (470)
-+|||+-+...||.||+..|+.+. |+.-|+ .-|.|.=+-.+.+.|+|..+.++|||| +-+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG-----HAD 80 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG-----HAD 80 (603)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCC-----CCC
T ss_conf 306899984488102899998731654456520144037642344349389851524620883898765898-----677
Q ss_pred CHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH----HHHHHHHHCCCC
Q ss_conf 0011100012100120120599845532122021223200000035766558944223354155----566654201333
Q gi|255764471|r 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN----LLQDLRTKAIKN 344 (470)
Q Consensus 269 ~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~----~~~~~~~~~~~~ 344 (470)
.+-| +-|-++. .|-|++++||.+|..+|++-++..+++.|.+.|+|+||+|.-..+.+ ..-++...+...
T Consensus 81 FGGE---VERvl~M---VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 81 FGGE---VERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred CCCH---HHHHHHH---CCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6625---4511432---334899997555888731444899997499848999677899988789999999999981997
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 2004883111234533348589999999999984146897898999999998288787787120699998628797
Q gi|255764471|r 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 (470)
Q Consensus 345 ~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~~g~~~ki~y~~Q~~~~P 420 (470)
..++.+ |+++-||+.|.--...-+ +...+.-.+..+++.-|+|...--.|==.-++|...++
T Consensus 155 deQLdF-PivYAS~~~G~a~~~~~~-------------~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~ 216 (603)
T COG1217 155 DEQLDF-PIVYASARNGTASLDPED-------------EADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNS 216 (603)
T ss_pred HHHCCC-EEEEEECCCCEECCCCCC-------------CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 455787-079854147510158655-------------55531689999997589998999888078998522445
No 403
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.50 E-value=7.9e-13 Score=105.39 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=95.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||+++++...- ...+.-|.-+-....+..+|.. +.|.||+|-.... .| ....+.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~------~i---~~~~y~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD------RL---RSLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC------HH---HHHHHC
T ss_conf 899999799769999999970999--9986883789999999999999999998477850000------35---567643
Q ss_pred HCCEEEEEECCCCCCCHHHH--HHHHHHHC--CCCCCCCCHHHHCCCHHHHHHH-------------H---H-HHHCCCC
Q ss_conf 77989999759887762344--55533210--2332222056522301210012-------------4---5-5312222
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDH--AITSFLRK--KNIPIIIVSNKMDTRIAQRNFY-------------E---I-YSLDFKE 140 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~--~i~~~lr~--~~~~~ilv~NK~D~~~~~~~~~-------------e---~-~~lg~~~ 140 (470)
.||++++|.|..+.-+-+.. .-...++. .+.|+++|.||+|+........ | + .+++--.
T Consensus 71 ~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~ 150 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
T ss_conf 78645999978987899999999999999749799789999880046532356777663046658999999999829978
Q ss_pred CEEEHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 01001110222014799999986101
Q gi|255764471|r 141 IVEISAEHDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 141 ~i~iSA~~g~Gi~~L~~~i~~~~~~~ 166 (470)
.+.+||++|.|++++.+.+.+..-..
T Consensus 151 y~EtSAkt~~nV~e~F~~lar~~l~~ 176 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99968067949899999999999735
No 404
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.50 E-value=9.4e-14 Score=111.61 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=55.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530-223899999899---899999658842076368999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIING---VIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
+|+++|-+.||||||+.|++...- ..++..|. -|.....+.+.+ ..+.+.||+|-.. ...| +...
T Consensus 2 KvvllGd~~VGKTSli~rf~~~~F--~~~y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe~------~~~~---~~~y 70 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI------GGKM---LDKY 70 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCC------HHHH---HHHH
T ss_conf 799999999709999999974989--8877886557889999998799469999996998500------2378---9999
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---HC----C-CC-CCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEH
Q ss_conf 9877989999759887762344555332---10----2-33-22220565223012100----12455-31222201001
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---RK----K-NI-PIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEIS 145 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r~----~-~~-~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iS 145 (470)
+..||.+++|.|....-+- ..+-.|+ ++ . .. +++||.||+|+...... ..+|. ++|+ ..+.+|
T Consensus 71 ~~~a~~~ilVYDitn~~SF--~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~g~-~f~E~S 147 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSF--ENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVS 147 (215)
T ss_pred HHHHCCEEEECCCCCHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEEEE
T ss_conf 9751513774147867899--9899999999998504577852999975454286477699999999998299-899983
Q ss_pred HHCCCCCHHHHHHHHHHH
Q ss_conf 110222014799999986
Q gi|255764471|r 146 AEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 146 A~~g~Gi~~L~~~i~~~~ 163 (470)
|++|.|++++...+...+
T Consensus 148 Aktg~nV~e~F~~la~~i 165 (215)
T cd04109 148 AKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 899949899999999999
No 405
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.50 E-value=4.4e-14 Score=113.83 Aligned_cols=174 Identities=25% Similarity=0.242 Sum_probs=133.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE-EEEEECHHCCCC-CCCCCHHHHHHCCCCCEE
Q ss_conf 388640356425678876520121100024566542023114203406-999817110444-443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGMRKP-SRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~-~~liDTaGirkk-~~~~~~~E~~s~~~t~~~ 282 (470)
.++++|+||+|||||+|.++|.+.+++++.+.||+..+...+.....+ ..++||||+... .+ ....+....+..+
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~---~~~~~~~~~~~~~ 78 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKH---KLGELLNKEARSA 78 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHH---HHHHHHHHHHHHH
T ss_conf 1121157765336677766324101002310123433200122366551578625876512456---7788888888753
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035766558944223354155566654201333200488311123453334
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~ 362 (470)
+...|++++++|+.+.....|..+...+.....+.++.+||.|............. .......+. .-+++.+|+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 156 (278)
T TIGR00436 79 LGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLD-KYAGLEDFK-PWPIVPISALKGD 156 (278)
T ss_pred HCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCC-CCCEEEHHHHHHC
T ss_conf 12322688986334455640468898765202101001223331010356777776-665542046-7520110112100
Q ss_pred CHHHHHHHHHHHHHHHHCCCC
Q ss_conf 858999999999998414689
Q gi|255764471|r 363 GLDDLMVSVLEINKLWKTRIT 383 (470)
Q Consensus 363 gi~~l~~~i~~~~~~~~~ri~ 383 (470)
++..+...+..-......+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (278)
T TIGR00436 157 NTEELKAFLEAKLPEGPFYYP 177 (278)
T ss_pred HHHHHHHHHHHHCCCCCCCCC
T ss_conf 057788887753033432265
No 406
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.50 E-value=2.8e-13 Score=108.40 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=94.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99971898878889999858850102589853022389999989989--9999658842076368999999999999987
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
|+++|.++||||||+.|+++.+= ..++.-|-.|.....+..++.. +.+.||+|-... ..++ ...+..
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~~------~~l~---~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY------DRLR---PLSYPD 69 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCC------CCCC---HHHCCC
T ss_conf 59989789759999999953989--998578505789999999999999999948987034------5450---011048
Q ss_pred CCEEEEEECCCCCCCHHHHHHH-HHH---HC--CCCCCCCCHHHHCCCHHHHH----------------HHHH-HHHCCC
Q ss_conf 7989999759887762344555-332---10--23322220565223012100----------------1245-531222
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAIT-SFL---RK--KNIPIIIVSNKMDTRIAQRN----------------FYEI-YSLDFK 139 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~-~~l---r~--~~~~~ilv~NK~D~~~~~~~----------------~~e~-~~lg~~ 139 (470)
||++++|.|..+.-+-+ .+. .|+ +. .+.|+++|.||+|+...... ..++ .++|.-
T Consensus 70 a~~~ilvydvt~~~Sf~--~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~ 147 (174)
T smart00174 70 TDVFLICFSVDSPASFE--NVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV 147 (174)
T ss_pred CCEEEEEEECCCHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 86899997589878999--9999899999986889869999875425012333545533146500299999999983997
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 201001110222014799999986
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
..+.+||++|.|++++.+.+.+..
T Consensus 148 ~y~EtSAk~g~nV~e~F~~l~r~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899964588949899999999997
No 407
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.50 E-value=8.7e-13 Score=105.09 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898530-22389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|.++||||||++|++...- ..++.-|. .|.....+.++|.. +.+.||||........-++ ........+
T Consensus 2 KivvlG~~gVGKTsli~rf~~~~F--~~~y~pTig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe-~~~~r~~~i 78 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQE-WMDPRFRGL 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHH-HHHHHHHHC
T ss_conf 899999799899999999971988--88747846616789999999999999999587730455565212-355564401
Q ss_pred HHCCEEEEEECCCCCCCHHH-HHHHHHHH------CCCCCCCCCHHHHCCCHHHHHH----HHHHHHCCC-CCEEEHHHC
Q ss_conf 87798999975988776234-45553321------0233222205652230121001----245531222-201001110
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYD-HAITSFLR------KKNIPIIIVSNKMDTRIAQRNF----YEIYSLDFK-EIVEISAEH 148 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D-~~i~~~lr------~~~~~~ilv~NK~D~~~~~~~~----~e~~~lg~~-~~i~iSA~~ 148 (470)
..||.+++|.|..+.-+-++ ..+.+++. ....|++||.||+|+....... ..+..-+.+ ..+-+||++
T Consensus 79 r~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~EtSAK~ 158 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 46888999998867788899999999999985147999828998345431003568899999999851997699887889
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 22201479999998610123
Q gi|255764471|r 149 DLGTSELHSVIFKIFKQKYP 168 (470)
Q Consensus 149 g~Gi~~L~~~i~~~~~~~~~ 168 (470)
|.|++++.+.++..+.....
T Consensus 159 ~~nV~~~F~~lvr~i~~~~~ 178 (198)
T cd04142 159 NWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCHHHHHHHHHHHHHHHCC
T ss_conf 96989999999999986044
No 408
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.49 E-value=2.8e-14 Score=115.15 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=83.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--E-----------EEE------EEEEECCEEEEEEECCCCCCC
Q ss_conf 089997189887888999985885010258985302--2-----------389------999989989999965884207
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITR--D-----------RLY------GQAIINGVIFNIVDTAGIADG 63 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Tr--d-----------~~~------~~~~~~~~~~~liDT~G~~~~ 63 (470)
--|+|+|.-.+||+||.-+|+-...+|-....|.++ | ... ..+.|.++.++||||||..+
T Consensus 21 RNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPGh~D- 99 (730)
T PRK07560 21 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD- 99 (730)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCCCCH-
T ss_conf 2899993799898999999999649986534798641788599997298575211028987569837899981969730-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCH
Q ss_conf 63689999999999999877989999759887762344555332102332222056522301
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~ 125 (470)
|..+ +..|+.-+|.+++||||.+|+.++.+.++++..+.+.|.++++||+|...
T Consensus 100 ----F~~E----v~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~~ 153 (730)
T PRK07560 100 ----FGGD----VTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRLI 153 (730)
T ss_pred ----HHHH----HHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf ----5999----99999885878999978988773189999999877999799986866235
No 409
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.49 E-value=1.7e-13 Score=109.87 Aligned_cols=147 Identities=20% Similarity=0.287 Sum_probs=101.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530223899999899899999658842076368999999999999987
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
.+|.++|-.|+|||||.++|.+....-+.++.|.+. ..+.+++..+.+.|.||-. .+.. .-....+.
T Consensus 18 ~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~----e~~~~~~~~~~~wDlgG~~-----~~R~----lW~~Yy~~ 84 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS----EELAIGNIKFTTFDLGGHQ-----QARR----LWKDYFPE 84 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCCH-----HHHH----HHHHHHCC
T ss_conf 479999658898899999980699753057878864----8999999999999889877-----7889----99988216
Q ss_pred CCEEEEEECCCCC--CCHHHHHHHHHHH---CCCCCCCCCHHHHCCCHHH--HHHHHHHHH----------CCC--CCEE
Q ss_conf 7989999759887--7623445553321---0233222205652230121--001245531----------222--2010
Q gi|255764471|r 83 AHLILFLIDSKAG--ITPYDHAITSFLR---KKNIPIIIVSNKMDTRIAQ--RNFYEIYSL----------DFK--EIVE 143 (470)
Q Consensus 83 aD~il~vvD~~~g--~~~~D~~i~~~lr---~~~~~~ilv~NK~D~~~~~--~~~~e~~~l----------g~~--~~i~ 143 (470)
+|.++||||+.+. +...-.++...|. -.+.|+++++||.|.+..- ..+.+...| +.. .+++
T Consensus 85 ~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~ 164 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEE
T ss_conf 75899997268688999999999998646765597099999756777899999999881951232655766776319997
Q ss_pred EHHHCCCCCHHHHHHHHHH
Q ss_conf 0111022201479999998
Q gi|255764471|r 144 ISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 144 iSA~~g~Gi~~L~~~i~~~ 162 (470)
+||.+|.|+.+-++++.+.
T Consensus 165 ~SA~tG~Gl~egl~WLs~~ 183 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 3560797869999999840
No 410
>KOG1144 consensus
Probab=99.49 E-value=1.1e-13 Score=111.07 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=61.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC------------C------EEEEEEECCCCCCC
Q ss_conf 50899971898878889999858850102589853022389999989------------9------89999965884207
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN------------G------VIFNIVDTAGIADG 63 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~------------~------~~~~liDT~G~~~~ 63 (470)
.|.++|+|.-..||.-|...|-++++ .-+...|+|..+-...+... + --+.+|||||...
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs- 552 (1064)
T KOG1144 475 SPICCILGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES- 552 (1064)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-
T ss_conf 86378971112660578887620553-2244566000005411526778999999875023313787048965887255-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHC
Q ss_conf 63689999999999999877989999759887762344555332102332222056522
Q gi|255764471|r 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 (470)
Q Consensus 64 ~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D 122 (470)
|...-. +.-.-||++++|||.-+|+.++..+-+++||..+.|+++++||+|
T Consensus 553 ----FtnlRs----rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiD 603 (1064)
T KOG1144 553 ----FTNLRS----RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKID 603 (1064)
T ss_pred ----HHHHHH----CCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf ----555665----043345537778531116774206789988754897598610134
No 411
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.49 E-value=4.6e-13 Score=106.94 Aligned_cols=149 Identities=25% Similarity=0.342 Sum_probs=96.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998998--9999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|-++||||||++|++..+- .+++..|.-|.....+..+|. .+.+.||+|-..... .+ ....+.
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~~f--~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~-----~~---~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT-----EQ---LERSIR 70 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCH-----HH---HHHHCC
T ss_conf 999999899778999999974989--98759955630579999999999999992898501220-----12---554304
Q ss_pred HCCEEEEEECCCCCCCHHHH-HHHHHHHC-----CCCCCCCCHHHHCCCHHHHHH----HHH-HHHCCCCCEEEHHHCC-
Q ss_conf 77989999759887762344-55533210-----233222205652230121001----245-5312222010011102-
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDH-AITSFLRK-----KNIPIIIVSNKMDTRIAQRNF----YEI-YSLDFKEIVEISAEHD- 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~-~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~----~e~-~~lg~~~~i~iSA~~g- 149 (470)
.||.+++|.|..+.-+-... ...++++. .+.|+++|.||+|+....... .++ .++|+ ..+.+||++|
T Consensus 71 ~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~-~f~E~SAk~~~ 149 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAAEDY 149 (165)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCC
T ss_conf 58789999865888999999999999999846699953998445545210367799999999998199-89997520878
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|++++.+.+.+.+
T Consensus 150 ~~V~~~F~~l~~~i 163 (165)
T cd04146 150 DGVHSVFHELCREV 163 (165)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 26999999999996
No 412
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.49 E-value=3.2e-13 Score=108.00 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=95.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853-022389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||++|++...- ..++..| .-|.....+++.|.+ +.+-||+|-.... .+ ....+
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~------~l---~~~y~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK------CI---ASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHHH
T ss_conf 899999899898999999963988--99725634505899999999999999999899997466------44---37773
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHH----CC---CCCCCCCHHHHCCCHHHHH------HHHH-HHHCCCCCEEEHH
Q ss_conf 8779899997598877623445553321----02---3322220565223012100------1245-5312222010011
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLR----KK---NIPIIIVSNKMDTRIAQRN------FYEI-YSLDFKEIVEISA 146 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr----~~---~~~~ilv~NK~D~~~~~~~------~~e~-~~lg~~~~i~iSA 146 (470)
..||++++|.|..+.-+- ..+-.|+. .. ..|+++|.||+|+...+.. ..++ .++|. +.+.+||
T Consensus 71 r~a~~~ilvyDvt~~~Sf--~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~-~~~E~SA 147 (170)
T cd04108 71 RGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSA 147 (170)
T ss_pred CCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCC-EEEEECC
T ss_conf 278758999978987899--9999999999985089998299999841379875576448999999987798-7999855
Q ss_pred HCCCCCHHHHHHHHHHHH
Q ss_conf 102220147999999861
Q gi|255764471|r 147 EHDLGTSELHSVIFKIFK 164 (470)
Q Consensus 147 ~~g~Gi~~L~~~i~~~~~ 164 (470)
++|.|++++.+.+.+.+-
T Consensus 148 k~g~nV~e~F~~ia~~~~ 165 (170)
T cd04108 148 LSGENVREFFFRVAALTF 165 (170)
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 788187999999999998
No 413
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.49 E-value=7.1e-13 Score=105.71 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=97.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.+|+++|-++||||||+.++++.+- ..++.-|.-|.....+..+|.. +.+.||+|-.. ...+ ....+
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~------~~~~---~~~~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED------YDRL---RPLSY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCC------CHHH---HHHHH
T ss_conf 9899999899859999999962989--98868857520227999999999999997976403------1556---59985
Q ss_pred HHCCEEEEEECCCCCCCHHHH-H-HHHHHHC--CCCCCCCCHHHHCCCHHH------------H----HHHHH-HHHCCC
Q ss_conf 877989999759887762344-5-5533210--233222205652230121------------0----01245-531222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-A-ITSFLRK--KNIPIIIVSNKMDTRIAQ------------R----NFYEI-YSLDFK 139 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~-i~~~lr~--~~~~~ilv~NK~D~~~~~------------~----~~~e~-~~lg~~ 139 (470)
..||++++|.|..+.-+-+.. + -...++. .+.|+++|.||+|+.... . ...++ .++|..
T Consensus 70 ~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~ 149 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH 149 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 57876789843797788999999999999986849988999685230044345545300457663999999999977998
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 201001110222014799999986
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
..+.+||++|.|++++.+.++..+
T Consensus 150 ~f~E~SAkt~~nV~e~F~~~i~~i 173 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999905487949899999999997
No 414
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.49 E-value=2.6e-13 Score=108.63 Aligned_cols=148 Identities=22% Similarity=0.304 Sum_probs=95.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|.++||||||++|++..+- ..++.-|.-|.....+..++. .+.+.||+|-.... .+ ....+
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~------~l---~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP------AM---QRLSI 70 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCC------CC---HHHHH
T ss_conf 0999989999769999999964969--9986884542055899999999999999899984654------23---24450
Q ss_pred HHCCEEEEEECCCCCCCHHH-HHHHHHHHC------CCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 87798999975988776234-455533210------23322220565223012100----1245-531222201001110
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYD-HAITSFLRK------KNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D-~~i~~~lr~------~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
..||.+++|.|..+.-+-+. ....++++. .+.|+++|.||+|....... ..++ .++|. ..+.+||++
T Consensus 71 ~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~ 149 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 6885799981389878999999999999999615888887899864246400278899999999998698-899974477
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|++++.+.++..
T Consensus 150 ~~nV~e~F~~l~~l 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHHC
T ss_conf 94879999999814
No 415
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.49 E-value=5.9e-13 Score=106.25 Aligned_cols=147 Identities=16% Similarity=0.277 Sum_probs=54.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99971898878889999858850-10258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
|.++|-.|+|||||+++|.+.+. .-+.++.|. ....+.+++..+.+.|+||- +.++..-....+++
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf----~~~~i~~~~~~l~~wDlgGq---------~~~R~~W~~Y~~~~ 68 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVAIPTQDAIMELLEIGGS---------QNLRKYWKRYLSGS 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----CEEEEEECCEEEEEEECCCH---------HHHHHHHHHHHHCC
T ss_conf 999967999899999998169987653563277----46999989999999853752---------88865699871177
Q ss_pred CEEEEEECCCCCC--CHHHHHHHHHHH-CCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCC-------CEEEHHHCCCCCH
Q ss_conf 9899997598877--623445553321-02332222056522301210012455312222-------0100111022201
Q gi|255764471|r 84 HLILFLIDSKAGI--TPYDHAITSFLR-KKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKE-------IVEISAEHDLGTS 153 (470)
Q Consensus 84 D~il~vvD~~~g~--~~~D~~i~~~lr-~~~~~~ilv~NK~D~~~~~~~~~e~~~lg~~~-------~i~iSA~~g~Gi~ 153 (470)
|.|+||||+.+.- ...-+++.+.|. ..+.|+++++||.|.+..-....=...|++.+ .+..+|.+|.|+.
T Consensus 69 ~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w~iq~~s~~g~gl~ 148 (164)
T cd04162 69 QGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSP 148 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCH
T ss_conf 58999995688889999999999997087998699998632433699999999866994637999889971104799858
Q ss_pred HHHHHHHHHHH
Q ss_conf 47999999861
Q gi|255764471|r 154 ELHSVIFKIFK 164 (470)
Q Consensus 154 ~L~~~i~~~~~ 164 (470)
+-++++...+.
T Consensus 149 ~~~~~l~~~~~ 159 (164)
T cd04162 149 SRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 416
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.49 E-value=4.6e-13 Score=106.97 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=98.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC-EEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853-022389999989989--99996588420763689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-TRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~-Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
+|+++|-++||||||++|+++..- ..++.-| --|.....+.+++.. +.+.||+|-.... .+ +...+
T Consensus 2 KIvllGd~gVGKTsLi~rf~~~~F--~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~--sl-------~~~yy 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN--SI-------TSAYY 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC--CC-------HHHHH
T ss_conf 899999799729999999954999--99879976468899999999999999999798861245--23-------57887
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHH---H---CCCCCCCCCHHHHCCCHHHHH----HHHHHH-HCCCCCEEEHHHCC
Q ss_conf 877989999759887762344555332---1---023322220565223012100----124553-12222010011102
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFL---R---KKNIPIIIVSNKMDTRIAQRN----FYEIYS-LDFKEIVEISAEHD 149 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~l---r---~~~~~~ilv~NK~D~~~~~~~----~~e~~~-lg~~~~i~iSA~~g 149 (470)
..|+.+++|.|..+.-+- ..+-.|+ + ..+.|++||.||+|+...... ..+|.+ ++.-..+-+||++|
T Consensus 71 r~a~~~ilVyDit~~~SF--~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A~~~~~~~f~EtSAkt~ 148 (202)
T cd04120 71 RSAKGIILVYDITKKETF--DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDN 148 (202)
T ss_pred HHHCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 641445899856888999--999999999997466887189876536505317879999999998279988999258999
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 2201479999998610123
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKYP 168 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~~ 168 (470)
.|++++.+.+...+-+..+
T Consensus 149 ~nV~e~F~~l~~~i~~~~~ 167 (202)
T cd04120 149 FNVDEIFLKLVDDILKKMP 167 (202)
T ss_pred CCHHHHHHHHHHHHHHHCC
T ss_conf 6989999999999998587
No 417
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.49 E-value=1.1e-12 Score=104.44 Aligned_cols=158 Identities=22% Similarity=0.326 Sum_probs=119.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHCCCCEEEEC-CEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 8864035642567887652012--1100024566542023114203-406999817110444443000111000121001
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYN--RLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~--r~ivs~~~GtTrD~i~~~~~~~-~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
|+-.|+...|||||+-+|+|-+ |.-=-..-|.|.|-=...+... |..+-|||.|| +|+|-- .-+.-
T Consensus 3 igTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPG----------HErFIk-nMlAG 71 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPG----------HEKFLS-NMLAG 71 (615)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCC----------HHHHHH-HHHHH
T ss_conf 9963654778999999986888656977897187277130755579997899987998----------389999-99744
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCC
Q ss_conf 20120599845532122021223200000035-76655894422335415556665420133320--0488311123453
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP--QIGDIYINTISGR 359 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~-k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~--~~~~~~i~~iSA~ 359 (470)
+-..|+|++||+|.+|+.+|+.-.+..+.-.| +..++|+||+|+++++. .+..++++.+.+. ++..+|++++||.
T Consensus 72 ~~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~--l~~v~~ei~~~l~~t~l~~~pi~~vSa~ 149 (615)
T PRK10512 72 VGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR--IDEVRRQVLEVLREYGFAEAKLFVTAAT 149 (615)
T ss_pred HHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHH--HHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 64378899999889987723799999999819982899997765689799--9999999999984478767975201456
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 33485899999999999
Q gi|255764471|r 360 TGEGLDDLMVSVLEINK 376 (470)
Q Consensus 360 ~g~gi~~l~~~i~~~~~ 376 (470)
||.|+++|.+.+.++..
T Consensus 150 tg~Gi~~L~~~L~~l~~ 166 (615)
T PRK10512 150 EGRGIDALREHLLQLPE 166 (615)
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 66799999999986255
No 418
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.49 E-value=2.2e-13 Score=109.14 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=95.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECC--EEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898-530223899999899--899999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHP-GITRDRLYGQAIING--VIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~-g~Trd~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.+|+++|.++||||||++|+++.+- ...+. -+..|.....+..++ ..+.+.||||-..... + ....
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~------~---~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF--DPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT------L---TSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCC------C---HHHH
T ss_conf 9899999799579999999963999--998487313342389999999999999999999842353------4---2244
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHH---HHC----CCCCCCCCHHHHCCCHHHHHHH---HH-HHHCCCCCEEEHHHC
Q ss_conf 987798999975988776234455533---210----2332222056522301210012---45-531222201001110
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSF---LRK----KNIPIIIVSNKMDTRIAQRNFY---EI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~---lr~----~~~~~ilv~NK~D~~~~~~~~~---e~-~~lg~~~~i~iSA~~ 148 (470)
+..||++++|.|..+.-+- ..+-.| ++. .+.|+++|.||+|......... ++ .+.|. ..+.+||++
T Consensus 70 ~~~a~~~ilvfd~~~~~Sf--~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~~~~~~~~a~~~~~-~y~e~Sak~ 146 (161)
T cd01863 70 YRGAQGVILVYDVTRRDTF--TNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNM-LFIETSAKT 146 (161)
T ss_pred HHHCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 1321534899767826569--9999999999985688887378873104400068999999999998699-999971586
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|++++.+.+.+.
T Consensus 147 g~nV~~~F~~l~~~ 160 (161)
T cd01863 147 RDGVQQAFEELVEK 160 (161)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 81599999999970
No 419
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.49 E-value=4e-13 Score=107.42 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=98.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258985302238999998998--9999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||++|++...- ...+.-|.-|.....+.+++. .+.+.||+|-.. + ..+ ....+.
T Consensus 1 KIvvlGd~~VGKTSLi~rf~~~~F--~~~y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG~e~-----~-~~l---~~~~~r 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS-----F-PAM---RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCCC-----C-HHH---HHHHCC
T ss_conf 989999899779999999985989--98888872541889999899799999997877513-----0-145---555415
Q ss_pred HCCEEEEEECCCCCCCHHHH-HHHHHHHC----CCCCCCCCHHHHCCCHH-H----HHHHHHHH--HCCCCCEEEHHHCC
Q ss_conf 77989999759887762344-55533210----23322220565223012-1----00124553--12222010011102
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDH-AITSFLRK----KNIPIIIVSNKMDTRIA-Q----RNFYEIYS--LDFKEIVEISAEHD 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~-~i~~~lr~----~~~~~ilv~NK~D~~~~-~----~~~~e~~~--lg~~~~i~iSA~~g 149 (470)
.||++++|.|..+.-+-+.. ...+.+.+ ...|++||.||+|+... . +...++.. +++ ..+.+||++|
T Consensus 70 ~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~~~~~-~f~EtSAktg 148 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDN 148 (198)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCC
T ss_conf 886689996169779999999999999996288898289998787650104784899999999855997-8998779999
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 2201479999998610
Q gi|255764471|r 150 LGTSELHSVIFKIFKQ 165 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~ 165 (470)
.|++++.+.+...+..
T Consensus 149 ~nV~e~F~~l~r~i~~ 164 (198)
T cd04147 149 ENVLEVFKELLRQANL 164 (198)
T ss_pred CCHHHHHHHHHHHHCC
T ss_conf 4989999999999773
No 420
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.48 E-value=1.2e-13 Score=110.95 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=106.8
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCE--EEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf 4035642567887652012110002456654202311420340--69998171104444430001110001210012012
Q gi|255764471|r 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH--PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 (470)
Q Consensus 209 ~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~--~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~a 286 (470)
+|-+.||||||+++++..+ -...-.|-+-.|.....+..++. .+.+||||| .|+|...+. ...+.|
T Consensus 1 vGD~gVGKTsli~R~~~~~-F~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAG----------qE~f~sl~~-~yyr~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG----------QEKFGGLRD-GYYIQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCC----------CCCCCCCCH-HHCCCC
T ss_conf 9898878999999994099-9999788714898999999899899999998988----------700011026-550578
Q ss_pred EEEEEECCCCCC--CHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 059984553212--202122320000-00357665589442233541555666542013332004883111234533348
Q gi|255764471|r 287 ETTIVLLDATIP--FEKQDLRIVDSV-FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 (470)
Q Consensus 287 dvvi~viDa~~~--~~~qd~~i~~~i-~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~g 363 (470)
+++|+|+|.+.. +..-..|+-... ...+.|+++|.||+||-+.+. ..+.. .+..-.+++.+.+|||+|.|
T Consensus 69 ~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~V-~~e~~------~~a~~~~~~y~EtSAKt~~N 141 (200)
T smart00176 69 QCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV-KAKSI------TFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CHHHH------HHHHHCCCCEEEEECCCCCC
T ss_conf 788999635877899989999999998579998899998875740436-59999------99998799789830046969
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEE
Q ss_conf 58999999999998414689789899999999828878778712069999862879778999
Q gi|255764471|r 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLI 425 (470)
Q Consensus 364 i~~l~~~i~~~~~~~~~ri~T~~LN~~l~~~~~~~~pp~~~g~~~ki~y~~Q~~~~Pp~f~i 425 (470)
++++|..+.+- ++ ..+.+.|+.+-.-.||.+.+
T Consensus 142 v~e~F~~Lar~-------------------L~----------~~~~l~~~~~~~l~p~~~~~ 174 (200)
T smart00176 142 FEKPFLWLARK-------------------LI----------GDPNLEFVAMPALAPPEVVM 174 (200)
T ss_pred HHHHHHHHHHH-------------------HH----------CCCCEEEECCCCCCCCCCCC
T ss_conf 79999999999-------------------83----------89982884588889988465
No 421
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=6.4e-14 Score=112.74 Aligned_cols=137 Identities=24% Similarity=0.276 Sum_probs=92.0
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHH---HCCCCCCCCCHHHHCCCHHHHHH----HHHHH-HCCCCCEEEHHHCCCC
Q ss_conf 9877989999759887762344555332---10233222205652230121001----24553-1222201001110222
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFL---RKKNIPIIIVSNKMDTRIAQRNF----YEIYS-LDFKEIVEISAEHDLG 151 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~l---r~~~~~~ilv~NK~D~~~~~~~~----~e~~~-lg~~~~i~iSA~~g~G 151 (470)
+...|=+++|+-+.++-... ..+-++| ...+...++|+||+|+...++.. ...|+ +|. +++.+||+++.|
T Consensus 77 v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy-~v~~~s~~~~~~ 154 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY-PVLFVSAKNGDG 154 (301)
T ss_pred CCCCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCE-EEEEECCCCCCC
T ss_conf 26655199999626899898-8999999999776995799997533676167789999999986793-599953767655
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 01479999998610123451122100001111112221112334332344430388640356425678876520121100
Q gi|255764471|r 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 (470)
Q Consensus 152 i~~L~~~i~~~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~~~~~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~iv 231 (470)
+++|.+.+... ..+++|.+.||||||+|+|.++....|
T Consensus 155 ~~~l~~~l~~~------------------------------------------~svl~GqSGVGKSSLiN~L~p~~~~~t 192 (301)
T COG1162 155 LEELAELLAGK------------------------------------------ITVLLGQSGVGKSTLINALLPELNQKT 192 (301)
T ss_pred HHHHHHHHCCC------------------------------------------EEEEECCCCCCHHHHHHHHCCHHHHHH
T ss_conf 89999975588------------------------------------------499988887769998874172121134
Q ss_pred HHHH-------HHHHHCCCCEEEECCEEEEEEECHHCCC
Q ss_conf 0245-------6654202311420340699981711044
Q gi|255764471|r 232 GSQS-------GITRDSVSISWNWKNHPIEIFDTAGMRK 263 (470)
Q Consensus 232 s~~~-------GtTrD~i~~~~~~~~~~~~liDTaGirk 263 (470)
+++. .||+.+. .+.+.+ .=.++||||+|.
T Consensus 193 ~eIS~~~~rGkHTTt~~~--l~~l~~-gG~iiDTPGf~~ 228 (301)
T COG1162 193 GEISEKLGRGRHTTTHVE--LFPLPG-GGWIIDTPGFRS 228 (301)
T ss_pred HHHCCCCCCCCCCCCEEE--EEECCC-CCEEEECCCCCC
T ss_conf 421044789887632489--998389-988972899771
No 422
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=99.48 E-value=1.1e-14 Score=117.86 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=97.7
Q ss_pred ECCCCCCHHHHHHHHHCCCEEEECC--------------------------------CCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 7189887888999985885010258--------------------------------98530223899999899899999
Q gi|255764471|r 8 VGAPNVGKSTLFNRLVKKKMAVVGN--------------------------------HPGITRDRLYGQAIINGVIFNIV 55 (470)
Q Consensus 8 vG~pNvGKStL~N~l~~~~~aiv~~--------------------------------~~g~Trd~~~~~~~~~~~~~~li 55 (470)
+|--==|||||+=||+---..|-.| +=|.|=|.=|..+.-+-++|++-
T Consensus 6 CGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVAYRYFsT~KRkFIvA 85 (411)
T TIGR02034 6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA 85 (411)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEE
T ss_conf 05445873102222255552168999999885225534788765234133067744324861213313257787617884
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHH---HHHHHHCCC-CCCCCCHHHHCCCHHHHHH-
Q ss_conf 65884207636899999999999998779899997598877623445---553321023-3222205652230121001-
Q gi|255764471|r 56 DTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA---ITSFLRKKN-IPIIIVSNKMDTRIAQRNF- 130 (470)
Q Consensus 56 DT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~---i~~~lr~~~-~~~ilv~NK~D~~~~~~~~- 130 (470)
||||.+-.+. .|. -....||+++++||||.|+..+.+. |+.+| | |.++|++||||+...++..
T Consensus 86 DTPGHEQYTR-----NMA----TGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLL---GIrh~VlAVNKmDLvdyd~~vF 153 (411)
T TIGR02034 86 DTPGHEQYTR-----NMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVF 153 (411)
T ss_pred CCCCCCCCCC-----CCC----HHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHH
T ss_conf 0855941544-----300----001311246655421021345677999998860---4538999997011147657889
Q ss_pred ----HHHH----HH-CCCC--CEEEHHHCCCCCH-H
Q ss_conf ----2455----31-2222--0100111022201-4
Q gi|255764471|r 131 ----YEIY----SL-DFKE--IVEISAEHDLGTS-E 154 (470)
Q Consensus 131 ----~e~~----~l-g~~~--~i~iSA~~g~Gi~-~ 154 (470)
.+|. .| |+.. +||+||.+|+|+. .
T Consensus 154 ~~I~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~y~ 189 (411)
T TIGR02034 154 ENIKKDYLAFAEQLAGVRDVTFIPLSALKGDNVVYS 189 (411)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEC
T ss_conf 999999999998638983479987331368740225
No 423
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.47 E-value=1.3e-12 Score=103.90 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=95.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|+++|-++||||||+.+++...- ..++.-|--|.....+..+|. .+.+.||+|-.. + ..+. ..++
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~-----~-~~~~---~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----Y-DRLR---PLSY 70 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCC-----C-HHHH---HHHH
T ss_conf 6999989999869999999973999--99868837887679999999999999986999724-----0-6788---9987
Q ss_pred HHCCEEEEEECCCCCCCHHHHH--HHHHHHC--CCCCCCCCHHHHCCCHHHHHH-------------HH---HH-HHCCC
Q ss_conf 8779899997598877623445--5533210--233222205652230121001-------------24---55-31222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHA--ITSFLRK--KNIPIIIVSNKMDTRIAQRNF-------------YE---IY-SLDFK 139 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~--i~~~lr~--~~~~~ilv~NK~D~~~~~~~~-------------~e---~~-~lg~~ 139 (470)
..||++++|.|..+.-+-.... ....++. .+.|++||.||+|+....... .+ +. +++.-
T Consensus 71 ~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 40668999986798788999999999999985889997987473013100456778865146775899999999875997
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf 20100111022201479999998
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
..+-+||++|.|++++.+.+...
T Consensus 151 ~f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
T ss_conf 89991878895979999999951
No 424
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=1.6e-12 Score=103.36 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=97.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501025898530-22389999989989--9999658842076368999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
++|+++|-+.||||||+++++..+- ....++.++ .|.....+.+++.+ +.+.||+|-... .. . ...
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~~f-~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~----~~----~--~~~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEY-DDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW----TE----D--SCM 69 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----HH----H--HHH
T ss_conf 9799999899709999999981986-98667874424889999999999989999989873126----66----6--565
Q ss_pred HHHCCEEEEEECCCCCCCHHH-HHHHHHHHC----CCCCCCCCHHHHCCCHHHHHH----HHH-HHHCCCCCEEEHHHCC
Q ss_conf 987798999975988776234-455533210----233222205652230121001----245-5312222010011102
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYD-HAITSFLRK----KNIPIIIVSNKMDTRIAQRNF----YEI-YSLDFKEIVEISAEHD 149 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D-~~i~~~lr~----~~~~~ilv~NK~D~~~~~~~~----~e~-~~lg~~~~i~iSA~~g 149 (470)
...||.+++|.|..+.-+-+. .++...|+. .+.|++||.||+|+....... .++ .++|. ..+-+||++|
T Consensus 70 ~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~-~F~EtSAk~~ 148 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETSAGLQ 148 (221)
T ss_pred HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEECCCCCC
T ss_conf 306868999996466778888999999999864899951999853566686389999999999998599-8999457999
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 22014799999986101
Q gi|255764471|r 150 LGTSELHSVIFKIFKQK 166 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~ 166 (470)
.|++++.+.++..+.-.
T Consensus 149 ~NV~elF~~lvrqIrl~ 165 (221)
T cd04148 149 HNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 49899999999999850
No 425
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=8e-13 Score=105.36 Aligned_cols=152 Identities=20% Similarity=0.286 Sum_probs=99.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEE-EECCCCCCEEEEEEEEEEEC-C--EEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501-02589853022389999989-9--8999996588420763689999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMA-VVGNHPGITRDRLYGQAIIN-G--VIFNIVDTAGIADGKNCSIAKQMNDQTE 77 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~a-iv~~~~g~Trd~~~~~~~~~-~--~~~~liDT~G~~~~~~~~~~~~i~~~~~ 77 (470)
+++|+++|-+.||||+|++|++..+-. -..++-| .|.....+++. + .++.+.||+|-.... .+ +.
T Consensus 2 ~fKivllGd~~VGKTsL~~rf~~~~F~~~~~~Tig--~df~~k~i~i~dg~~v~l~IwDTaGqe~~~------si---~~ 70 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--VDFFSRLIEIEPGVRIKLQLWDTAGQERFR------SI---TR 70 (211)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEEEEEECCCCEEEEEEEECCCCCCCC------CC---HH
T ss_conf 79999999999619999999981999998687201--688998999779959999999798863456------44---28
Q ss_pred HHHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C----CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEH
Q ss_conf 9998779899997598877623445553321---0----23322220565223012100----12455-31222201001
Q gi|255764471|r 78 LAINEAHLILFLIDSKAGITPYDHAITSFLR---K----KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEIS 145 (470)
Q Consensus 78 ~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~----~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iS 145 (470)
.....|+.+++|.|....-+- ..+-.|++ . ...|++||.||+|+...... ..+|. ++|+ ..+-+|
T Consensus 71 ~yyr~a~g~ilVyDvt~~~SF--~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~~~-~f~EtS 147 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIETS 147 (211)
T ss_pred HHHHHCCEEEEEECCCCHHHH--HHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCC-EEEEEC
T ss_conf 774212446897147777999--99999999999974988853898874231285678899999999998399-799975
Q ss_pred HHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1102220147999999861012
Q gi|255764471|r 146 AEHDLGTSELHSVIFKIFKQKY 167 (470)
Q Consensus 146 A~~g~Gi~~L~~~i~~~~~~~~ 167 (470)
|++|.|++++.+.+...+-+..
T Consensus 148 AK~g~nV~e~F~~la~~i~~~~ 169 (211)
T cd04111 148 ARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9998198999999999999998
No 426
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=9.5e-14 Score=111.57 Aligned_cols=155 Identities=25% Similarity=0.382 Sum_probs=114.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCC--------------HHHHHHHHHCCCCEEEECC-----EEEEEEECHHCCCC
Q ss_conf 0388640356425678876520121100--------------0245665420231142034-----06999817110444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLT--------------GSQSGITRDSVSISWNWKN-----HPIEIFDTAGMRKP 264 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~iv--------------s~~~GtTrD~i~~~~~~~~-----~~~~liDTaGirkk 264 (470)
-+.+|+-+-..|||||-.+|+..-..+- -..-|.|..+-...+.|+. ..+.||||||
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG---- 85 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG---- 85 (603)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCC----
T ss_conf 3227999842782048899999846767678888752213467662845873278999994799779999727998----
Q ss_pred CCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 44300011100012100120120599845532122021223200000035766558944223354155566654201333
Q gi|255764471|r 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 (470)
Q Consensus 265 ~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~ 344 (470)
+++...| +.||+.|++. +++|+||++|+..|++.-.-++.+.+.-+|-|+||+||-..+.+ ....++...
T Consensus 86 -HVDFsYE---VSRSLAACEG---alLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpe---rvk~eIe~~ 155 (603)
T COG0481 86 -HVDFSYE---VSRSLAACEG---ALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPE---RVKQEIEDI 155 (603)
T ss_pred -CCCEEEE---EHHHHHHCCC---CEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH---HHHHHHHHH
T ss_conf -4436777---6133763777---18999876553788999999998769679975322568878978---999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 20048831112345333485899999999
Q gi|255764471|r 345 LPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 345 ~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
+. ++-...+-+|||+|.||++++++|.+
T Consensus 156 iG-id~~dav~~SAKtG~gI~~iLe~Iv~ 183 (603)
T COG0481 156 IG-IDASDAVLVSAKTGIGIEDVLEAIVE 183 (603)
T ss_pred HC-CCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 09-89520046763468997999999996
No 427
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.47 E-value=1e-12 Score=104.58 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=99.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--------------------EEEECC-----------------CCCCEEEEEEEEEE
Q ss_conf 89997189887888999985885--------------------010258-----------------98530223899999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKK--------------------MAVVGN-----------------HPGITRDRLYGQAI 46 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~--------------------~aiv~~-----------------~~g~Trd~~~~~~~ 46 (470)
.||++|....|||||.-+|+... ...+++ ..+.|.+.-...++
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred ECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH--HHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCC
Q ss_conf 8998999996588420763689999999999999--87798999975988776234455533210233222205652230
Q gi|255764471|r 47 INGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI--NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 (470)
Q Consensus 47 ~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai--~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~ 124 (470)
..++.+.|+|+||-.. +-+.| ...+ ..+|.+++||+|.+|+.++.++-+..++..+.|+++|+||+|..
T Consensus 81 ~~~k~it~iD~pGH~~-----y~kt~----i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHER-----YLKTT----LFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred CCCCEEEEEECCCHHH-----HHHHH----HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 6786799997887399-----99999----98763556898999931788977999999999998399989999897768
Q ss_pred HHHHH---HHHH--------------------------HHHC---CCCCEEEHHHCCCCCHHHHHHHH
Q ss_conf 12100---1245--------------------------5312---22201001110222014799999
Q gi|255764471|r 125 IAQRN---FYEI--------------------------YSLD---FKEIVEISAEHDLGTSELHSVIF 160 (470)
Q Consensus 125 ~~~~~---~~e~--------------------------~~lg---~~~~i~iSA~~g~Gi~~L~~~i~ 160 (470)
..+.. ..+. .... .-+++.+|+.+|.|++.|..-+.
T Consensus 152 ~~~~l~~~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL~ 219 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98999999999999970447556870216858899998648867774679976589879999999998
No 428
>KOG2486 consensus
Probab=99.46 E-value=4.4e-14 Score=113.83 Aligned_cols=157 Identities=25% Similarity=0.291 Sum_probs=113.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE-EEECC-CCCCEEEEEEEEEEECCEEEEEEECCCCCC-----CCHHHHHHHHHH
Q ss_conf 50899971898878889999858850-10258-985302238999998998999996588420-----763689999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKM-AVVGN-HPGITRDRLYGQAIINGVIFNIVDTAGIAD-----GKNCSIAKQMND 74 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~-aiv~~-~~g~Trd~~~~~~~~~~~~~~liDT~G~~~-----~~~~~~~~~i~~ 74 (470)
.|.++++|+.|||||||+|-++..+. +.++. .+|-|+-..-..+ |..+.++|.||+.. ....+.. .|..
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~-~~t~ 211 (320)
T KOG2486 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWD-KFTK 211 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC---CCEEEEEECCCCCCCCCCCCCCCHHH-HHHH
T ss_conf 8526662477622788876543214556403788765113200120---55489984688654567855741476-7578
Q ss_pred HHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH--------HH-HHHHHHC---CCCC-
Q ss_conf 999999877989999759887762344555332102332222056522301210--------01-2455312---2220-
Q gi|255764471|r 75 QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR--------NF-YEIYSLD---FKEI- 141 (470)
Q Consensus 75 ~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~--------~~-~e~~~lg---~~~~- 141 (470)
+.+..-+.--.+++++|+..++.+.|...++|+.+.+.|.-+|+||||..+.-. .. ..|..|+ |..-
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~ 291 (320)
T KOG2486 212 SYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDL 291 (320)
T ss_pred HHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCCCCCEECCC
T ss_conf 88872653311566630367889987699988752499738863024455530223557540012102001500041158
Q ss_pred --EEEHHHCCCCCHHHHHHHHHH
Q ss_conf --100111022201479999998
Q gi|255764471|r 142 --VEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 142 --i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
+.+|+.++.|+++|+-.|...
T Consensus 292 Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486 292 PWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred CCEEEECCCCCCCEEEEEEHHHH
T ss_conf 70132043425720011016644
No 429
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=8.2e-14 Score=112.02 Aligned_cols=58 Identities=41% Similarity=0.583 Sum_probs=49.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCC
Q ss_conf 0899971898878889999858850102589853022389999989989999965884207
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~ 63 (470)
-.|.+||.||||||||+|+|+|++.+.||+.||+|++...-.+ +..+.|+||||+..-
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPP 190 (322)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCEEEEC---CCCEEEEECCCCCCC
T ss_conf 0899987897648999999862055523799962045168972---786289738880788
No 430
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=7.4e-13 Score=105.56 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=96.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|+++|.++||||||++|++...- ...+.-|.-|.....+..+|.+ +.+.||+|-.... .+ .....
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~~~f--~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~------~~---~~~~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE------RL---RPLSY 70 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC------CC---CCCEE
T ss_conf 1999999899768999999982989--9987886678989999999999999999788870345------46---04123
Q ss_pred HHCCEEEEEECCCCCCCHHHHH--HHHHHHC--CCCCCCCCHHHHCCCHHHH--------------HHHHH-HHHCCCCC
Q ss_conf 8779899997598877623445--5533210--2332222056522301210--------------01245-53122220
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHA--ITSFLRK--KNIPIIIVSNKMDTRIAQR--------------NFYEI-YSLDFKEI 141 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~--i~~~lr~--~~~~~ilv~NK~D~~~~~~--------------~~~e~-~~lg~~~~ 141 (470)
..||++++|.|..+.-+-+... -...+++ .+.|+++|.||+|+..... ....+ .++|....
T Consensus 71 ~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y 150 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKY 150 (187)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEE
T ss_conf 38858999702698667999999999999985879988999886001134112111223155789999999998499789
Q ss_pred EEEHHHCCCCCHHHHHHHHHHHH
Q ss_conf 10011102220147999999861
Q gi|255764471|r 142 VEISAEHDLGTSELHSVIFKIFK 164 (470)
Q Consensus 142 i~iSA~~g~Gi~~L~~~i~~~~~ 164 (470)
+-+||++|.|++++.+.+.+..-
T Consensus 151 ~EtSAk~~~nV~e~F~~~~r~~l 173 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99688999798999999999997
No 431
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.46 E-value=8.7e-13 Score=105.11 Aligned_cols=145 Identities=23% Similarity=0.287 Sum_probs=91.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEE--CCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588501025898-5302238999998--9989--999965884207636899999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHP-GITRDRLYGQAII--NGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~-g~Trd~~~~~~~~--~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+|+++|-++||||||+.|+++..- ..++. -..-|.....+.+ .+.. +.+-||+|-... ..+ ...
T Consensus 2 KivvlGd~~VGKTsLi~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~------~~l---~~~ 70 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF------DAI---TKA 70 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCC------CCC---HHH
T ss_conf 899999999889999999984968--987688556257887899867997999999978997013------415---245
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH-----CCCCCCCCCHHHHCCCHHHHH----HHHH-HHHCCCCCEEEHHHC
Q ss_conf 998779899997598877623445553321-----023322220565223012100----1245-531222201001110
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIPIIIVSNKMDTRIAQRN----FYEI-YSLDFKEIVEISAEH 148 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr-----~~~~~~ilv~NK~D~~~~~~~----~~e~-~~lg~~~~i~iSA~~ 148 (470)
.+..||++++|.|..+.-+- ..+-.|++ ..+.|+++|.||+|+...... ..++ .++|. +.+.+||++
T Consensus 71 ~~~~a~~~ilvydvt~~~Sf--~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~ 147 (162)
T cd04106 71 YYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred HHHHHCCEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCCC
T ss_conf 61230312688406988999--999999999997669962999840544410177899999999998698-799986888
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 22201479999998
Q gi|255764471|r 149 DLGTSELHSVIFKI 162 (470)
Q Consensus 149 g~Gi~~L~~~i~~~ 162 (470)
|.|++++.+.+.+.
T Consensus 148 ~~nV~e~F~~la~k 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 82989999999960
No 432
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.46 E-value=7.4e-13 Score=105.56 Aligned_cols=149 Identities=19% Similarity=0.309 Sum_probs=98.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
++|+++|.++||||||+++++..+- ..++.-|.-|.....+.++|.. +.+.||+|-..... + ....+
T Consensus 1 yKIvvlGdsgVGKTSLi~Rf~~~~F--~~~y~pTi~d~~~k~i~i~g~~v~L~IwDTaGqe~f~s------l---~~~y~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA------M---RRLSI 69 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCCC------C---HHHHH
T ss_conf 9799999899789999999964968--99878883531889999999999999996766536874------4---20131
Q ss_pred HHCCEEEEEECCCCCCCHHHH-HHHHHHH------------CCCCCCCCCHHHHCCCHHHHH----HHHH--HHHCCCCC
Q ss_conf 877989999759887762344-5553321------------023322220565223012100----1245--53122220
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH-AITSFLR------------KKNIPIIIVSNKMDTRIAQRN----FYEI--YSLDFKEI 141 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~-~i~~~lr------------~~~~~~ilv~NK~D~~~~~~~----~~e~--~~lg~~~~ 141 (470)
..||++++|.|..+.-+-++. ...+.++ ..+.|++||-||+|+...... ..++ .+.|. ..
T Consensus 70 ~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~Vs~eEa~~~~A~~~~~-~f 148 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC-AY 148 (247)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCC-EE
T ss_conf 21778999997998789998999999999864001001357888758998665543201787999999999976898-79
Q ss_pred EEEHHHCCCCCHHHHHHHHHHH
Q ss_conf 1001110222014799999986
Q gi|255764471|r 142 VEISAEHDLGTSELHSVIFKIF 163 (470)
Q Consensus 142 i~iSA~~g~Gi~~L~~~i~~~~ 163 (470)
+-+||++|.|++++...++...
T Consensus 149 ~EtSAKt~~NV~E~F~~L~~~~ 170 (247)
T cd04143 149 FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EECCCCCCCCHHHHHHHHHHHC
T ss_conf 9887899949899999999854
No 433
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.46 E-value=4.8e-14 Score=113.56 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=68.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEE-----------E----------EC---CEEEEEEEC
Q ss_conf 30388640356425678876520121100024566542023114-----------2----------03---406999817
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-----------N----------WK---NHPIEIFDT 258 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~-----------~----------~~---~~~~~liDT 258 (470)
.++++|||-||||||||||+|++.. +-+++.|.||.|+-.... . .+ -.++.|+|.
T Consensus 2 ~lk~GIVGLPNvGKSTlFnaLT~~~-~~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vDI 80 (396)
T PRK09602 2 MIQIGLVGKPNVGKSTFFSAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELIDV 80 (396)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 8348888899998899999997799-864589988877843625233688436665430654221357733655899875
Q ss_pred HHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCC
Q ss_conf 1104444430001110001210012012059984553
Q gi|255764471|r 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 (470)
Q Consensus 259 aGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa 295 (470)
|||-+..+..+++- ++=+..|+++|.+++|+|+
T Consensus 81 AGLVkGAS~GeGLG----NkFLs~IRevDaI~hVVr~ 113 (396)
T PRK09602 81 AGLVPGAHEGRGLG----NQFLDDLRQADALIHVVDA 113 (396)
T ss_pred CCCCCCCCCCCCCC----HHHHHHHHHCCEEEEEEEC
T ss_conf 55676501168760----8999988726879999753
No 434
>KOG0092 consensus
Probab=99.46 E-value=2.2e-13 Score=109.08 Aligned_cols=153 Identities=22% Similarity=0.299 Sum_probs=97.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCEEEECC--EEEEEEECHHCCCCCCCCCHHHHHHCCC
Q ss_conf 3038864035642567887652012110--00245665420231142034--0699981711044444300011100012
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLL--TGSQSGITRDSVSISWNWKN--HPIEIFDTAGMRKPSRITESLEQKTVKK 278 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~~GtTrD~i~~~~~~~~--~~~~liDTaGirkk~~~~~~~E~~s~~~ 278 (470)
.+++.++|-.|||||||+=++..-.-.- .+-+ |- -.....+..++ .+|.+||||| .|.|-..-
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI-Ga--aF~tktv~~~~~~ikfeIWDTAG----------QERy~sla 71 (200)
T KOG0092 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI-GA--AFLTKTVTVDDNTIKFEIWDTAG----------QERYHSLA 71 (200)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCC-CE--EEEEEEEEECCCEEEEEEEECCC----------CCCCCCCC
T ss_conf 5799998678777024112223275663234540-00--78999998489578999987677----------30033556
Q ss_pred CCEEEECCEEEEEECCCCCC--CHHHHHHHHHHHHCCCCCCCE--EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 10012012059984553212--202122320000003576655--89442233541555666542013332004883111
Q gi|255764471|r 279 SMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFNTGHAVVL--ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 279 t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i~~~~k~~ii--v~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
.+ -.+.|+.+|+|.|+++. +..--.|+-++-.+....+++ |.||+||.+.+.-..++...+... .+...+
T Consensus 72 pM-YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-----~gll~~ 145 (200)
T KOG0092 72 PM-YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES-----QGLLFF 145 (200)
T ss_pred CC-EECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHH-----CCCEEE
T ss_conf 10-104776799998556678999999999999862798759998325165410345468888989985-----498799
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 23453334858999999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~ 374 (470)
..||+||.|+++++..|.+-
T Consensus 146 ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092 146 ETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 98525565899999999975
No 435
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=99.45 E-value=1.3e-13 Score=110.75 Aligned_cols=142 Identities=26% Similarity=0.333 Sum_probs=88.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE------------------------EE------CCCCCCEEEEEEEEEEECCEEEE
Q ss_conf 8999718988788899998588501------------------------02------58985302238999998998999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMA------------------------VV------GNHPGITRDRLYGQAIINGVIFN 53 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~a------------------------iv------~~~~g~Trd~~~~~~~~~~~~~~ 53 (470)
-||++|.--.||||+.-+|+-.--+ -| ...-|+|-|.-...++-.-++++
T Consensus 9 Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~KY~~T 88 (445)
T TIGR00483 9 NVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDKYEVT 88 (445)
T ss_pred EEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 48998254088502667777542896589999998757551873036765431100000156224334454178851699
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC-------CCHHHHHHHHHHHCCCC-CCCCCHHHHCCCH
Q ss_conf 996588420763689999999999999877989999759887-------76234455533210233-2222056522301
Q gi|255764471|r 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG-------ITPYDHAITSFLRKKNI-PIIIVSNKMDTRI 125 (470)
Q Consensus 54 liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g-------~~~~D~~i~~~lr~~~~-~~ilv~NK~D~~~ 125 (470)
+||.||.++ |-+.|.- ....||++++|+|..++ ..++.+|-+=+-|..+. -+++++||+|..+
T Consensus 89 ivDcPGHRD-----FiKNMIT----GaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V~ 159 (445)
T TIGR00483 89 IVDCPGHRD-----FIKNMIT----GASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSVN 159 (445)
T ss_pred EEECCCCCH-----HHHHCCC----CCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCEE
T ss_conf 984698701-----3431126----6751242799995254410240121786057788877503204533310246100
Q ss_pred HHHHHH--------H-H-HHHCCC----CCEEEHHHCCCCCHH
Q ss_conf 210012--------4-5-531222----201001110222014
Q gi|255764471|r 126 AQRNFY--------E-I-YSLDFK----EIVEISAEHDLGTSE 154 (470)
Q Consensus 126 ~~~~~~--------e-~-~~lg~~----~~i~iSA~~g~Gi~~ 154 (470)
.++..+ + | -.+|+. +.+|+||-.|.++-.
T Consensus 160 yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~~~GDN~~~ 202 (445)
T TIGR00483 160 YDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISAFEGDNVIK 202 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHH
T ss_conf 2778999999999998998748875612325403546761343
No 436
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.45 E-value=1.7e-12 Score=103.17 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=94.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|.++||||||+.|++..+- ..++.-|.-|.....+..++.. +.+.||+|-... ..+ ....+.
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~~F--~~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e~~------~~l---~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF------DKL---RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCC------CHH---HHHHHC
T ss_conf 899999899788999999961999--998578358999999999999999999989987344------345---676613
Q ss_pred HCCEEEEEECCCCCCCHHHH--HHHHHHHC--CCCCCCCCHHHHCCCHHH----------------HHHHHHH-HHCCCC
Q ss_conf 77989999759887762344--55533210--233222205652230121----------------0012455-312222
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYDH--AITSFLRK--KNIPIIIVSNKMDTRIAQ----------------RNFYEIY-SLDFKE 140 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D~--~i~~~lr~--~~~~~ilv~NK~D~~~~~----------------~~~~e~~-~lg~~~ 140 (470)
.||++++|.|..+.-+-.+. .....+++ .+.|+++|.||+|+.... +...++. ++|.-.
T Consensus 71 ~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78789999965987889999999999999609899889998870110013355444332575578999999999849968
Q ss_pred CEEEHHHCCCCCHHHHHHHHH
Q ss_conf 010011102220147999999
Q gi|255764471|r 141 IVEISAEHDLGTSELHSVIFK 161 (470)
Q Consensus 141 ~i~iSA~~g~Gi~~L~~~i~~ 161 (470)
.+-+||++|.|++++.+.++-
T Consensus 151 y~EtSAkt~~nV~e~Fe~~i~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999686889697999999985
No 437
>PRK12739 elongation factor G; Reviewed
Probab=99.45 E-value=9.5e-13 Score=104.84 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=89.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCC--CHHH---------------HHHHHHCCCCEEEECCEEEEEEECHHCCCCC
Q ss_conf 3038864035642567887652012110--0024---------------5665420231142034069998171104444
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLL--TGSQ---------------SGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~---------------~GtTrD~i~~~~~~~~~~~~liDTaGirkk~ 265 (470)
..+|+|+|...+||+||..+|+-..-.+ .+++ -|+|.-+--..+.|+++.|.||||||
T Consensus 10 IRNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPG----- 84 (693)
T PRK12739 10 TRNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPG----- 84 (693)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCC-----
T ss_conf 139999907998989999999997698565733438975687809998759867455277845998999994969-----
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 430001110001210012012059984553212202122320000003576655894422335
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~ 328 (470)
+++..-| + .+|++-+|.|++|+||.+|+..|++.+++++.+++.|.|+++||+|...
T Consensus 85 HvDF~~E---V---~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ 141 (693)
T PRK12739 85 HVDFTIE---V---ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 141 (693)
T ss_pred CCHHHHH---H---HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 7405899---9---9999984879999978988767799999999986989699997978899
No 438
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.4e-13 Score=107.08 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=116.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCC------------------------CCC------HHHHHHHHHCCCCEEEECC
Q ss_conf 4430388640356425678876520121------------------------100------0245665420231142034
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNR------------------------LLT------GSQSGITRDSVSISWNWKN 250 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r------------------------~iv------s~~~GtTrD~i~~~~~~~~ 250 (470)
..-++++++|.+++|||||+-+|+-+-- +-| -..-|.|.|.-...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCC
T ss_conf 87128999837878703445565777379798999999999986197716899985388667866668997778864377
Q ss_pred EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCC-------CHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 069998171104444430001110001210012012059984553212-------20212232000000357-6655894
Q gi|255764471|r 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP-------FEKQDLRIVDSVFNTGH-AVVLALN 322 (470)
Q Consensus 251 ~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~-------~~~qd~~i~~~i~~~~k-~~iiv~N 322 (470)
..|.++|+||.| .| +.........||+++||+||+.+ ...|+...+-++.-.|. .+|+++|
T Consensus 85 ~~~tIiDaPGHr----------dF-vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavN 153 (428)
T COG5256 85 YNFTIIDAPGHR----------DF-VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVN 153 (428)
T ss_pred CEEEEEECCCHH----------HH-HHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 058996078467----------78-9876313313367999998889831014365875167899998569756999997
Q ss_pred CCCCCCCHHHHHHHHHHHCCC---CCCCCC-CCCCCCCCCCCCCCHHHHH
Q ss_conf 422335415556665420133---320048-8311123453334858999
Q gi|255764471|r 323 KWDMVSDKLNLLQDLRTKAIK---NLPQIG-DIYINTISGRTGEGLDDLM 368 (470)
Q Consensus 323 K~Dli~~~~~~~~~~~~~~~~---~~~~~~-~~~i~~iSA~~g~gi~~l~ 368 (470)
|||+++.+.+.++++...+.. .+.+.. .++.+||||.+|.|+.+.-
T Consensus 154 KMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 154 KMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 15666627999999999999999971998667707962244677633267
No 439
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.45 E-value=2.4e-12 Score=102.14 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=99.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH-HHCCCCEEEECC---EEEEEEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 03886403564256788765201211000245665-420231142034---06999817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT-RDSVSISWNWKN---HPIEIFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT-rD~i~~~~~~~~---~~~~liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
++|.++|-+.||||||+.+++... - ..+..-|. .|.....+...+ ..+.++||||- |.|... +
T Consensus 1 ~KvvllGd~~VGKTSli~rf~~~~-F-~~~y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGq----------e~~~~~-~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-F-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ----------SIGGKM-L 67 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-C-CCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC----------CCHHHH-H
T ss_conf 979999999970999999997498-9-88778865578899999987994699999969985----------002378-9
Q ss_pred CEEEECCEEEEEECCCCCC--CHHHHHHH--HHHHH-CCC-C-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0012012059984553212--20212232--00000-035-7-6655894422335415556665420133320048831
Q gi|255764471|r 280 MQSVRTCETTIVLLDATIP--FEKQDLRI--VDSVF-NTG-H-AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~~--~~~qd~~i--~~~i~-~~~-k-~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
...++.||.+++|.|.++. +..-+.|+ ++... +.. + ++++|.||+||.+.+.-..++- +.+..-.+++
T Consensus 68 ~~y~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~-----~~~A~~~g~~ 142 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH-----ARFAQANGME 142 (215)
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHH-----HHHHHHCCCE
T ss_conf 99997515137741478678999899999999998504577852999975454286477699999-----9999982998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 11234533348589999999999984146897898
Q gi|255764471|r 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~L 387 (470)
.+.+||++|.||+++|..+.+ +-...+.+..+|
T Consensus 143 f~E~SAktg~nV~e~F~~la~--~i~~~~l~~~~~ 175 (215)
T cd04109 143 SCLVSAKTGDRVNLLFQQLAA--ELLGVDLSKAEL 175 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHCCCCCHHHH
T ss_conf 999838999498999999999--997683664565
No 440
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.44 E-value=4.5e-12 Score=100.27 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=97.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 508999718988788899998588501025898530-2238999998998--9999965884207636899999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT-RDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~T-rd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
+++|+++|.++||||||+.|+++.+- ..++.-|. -|.....++.++. .+.+.||+|-.. +...+. ..
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~F--~~~~~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~-----~~~s~~---~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF--PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER-----FRKSMV---QH 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHH-----HHHHHH---HH
T ss_conf 69999999799779999999953988--998788630787899999999999999997788530-----567778---99
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHH---C----CCCCCCCCHHHHCCCHHHHH----HHHHH-HHCCCCCEEEHH
Q ss_conf 998779899997598877623445553321---0----23322220565223012100----12455-312222010011
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLR---K----KNIPIIIVSNKMDTRIAQRN----FYEIY-SLDFKEIVEISA 146 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr---~----~~~~~ilv~NK~D~~~~~~~----~~e~~-~lg~~~~i~iSA 146 (470)
.+..||++++|.|..+.-+- ..+-.|+. + ...|+++|.||+|+...... ..++. ++|+ ..+.+||
T Consensus 72 ~~~~a~~~ilvydvt~~~Sf--~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SA 148 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASF--HSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred HHCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCC-EEEEECC
T ss_conf 84577357999504747679--99999999999865888997999999821341178799999999997799-9999888
Q ss_pred H---CCCCCHHHHHHHHHHHH
Q ss_conf 1---02220147999999861
Q gi|255764471|r 147 E---HDLGTSELHSVIFKIFK 164 (470)
Q Consensus 147 ~---~g~Gi~~L~~~i~~~~~ 164 (470)
+ +|.|++++...+...+.
T Consensus 149 K~~~~~~nV~~~F~~la~~i~ 169 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred CCCCCCCCHHHHHHHHHHHHC
T ss_conf 998517088999999999960
No 441
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.9e-13 Score=108.31 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=116.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9997189887888999985885010--25898530223899999899899999658842076368999999999999987
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAV--VGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~ai--v~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~ 82 (470)
|+..|.---||+||.-+++|....+ -...-|+|-|.-++.....++...+||.||..+ .+.. | ..++.-
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~----~i~~-m----iag~~~ 73 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD----FISN-L----LAGLGG 73 (447)
T ss_pred EEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHH----HHHH-H----HHHHCC
T ss_conf 997400201430223330255332054566158468420573257777368861898478----8999-9----854057
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC-CCCHHHHCCCHHH------HHHHHHHHHCCCCCEEEHHHCCCCCHHH
Q ss_conf 79899997598877623445553321023322-2205652230121------0012455312222010011102220147
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDTRIAQ------RNFYEIYSLDFKEIVEISAEHDLGTSEL 155 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~-ilv~NK~D~~~~~------~~~~e~~~lg~~~~i~iSA~~g~Gi~~L 155 (470)
.|.++||||+.+|+++++.|.+..|.-.+.+- ++|++|+|..... ..+....++.-.+++++||..|+|+++|
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~Gi~~L 153 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 74589998475576643688999998619873289996223446788999999998650200032301101257877999
Q ss_pred HHHHHHHHH
Q ss_conf 999999861
Q gi|255764471|r 156 HSVIFKIFK 164 (470)
Q Consensus 156 ~~~i~~~~~ 164 (470)
.+.+.....
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHHHH
T ss_conf 999987520
No 442
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.44 E-value=3.8e-12 Score=100.81 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=95.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998--999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.+|+++|-++||||||+.+++..+- ..++.-|.-+........+|. .+.|.||+|-.. + ..+ .....
T Consensus 4 ~KivlvGd~~VGKTsli~r~~~~~F--~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~-----~-~~~---~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----Y-DRL---RTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCC-----H-HHH---HHHHH
T ss_conf 8999999999899999999972999--98646621000467899999999999985888700-----3-567---78774
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHH-HHHH---C--CCCCCCCCHHHHCCCHHHHHHH----------------HH-HHHC
Q ss_conf 877989999759887762344555-3321---0--2332222056522301210012----------------45-5312
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAIT-SFLR---K--KNIPIIIVSNKMDTRIAQRNFY----------------EI-YSLD 137 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~-~~lr---~--~~~~~ilv~NK~D~~~~~~~~~----------------e~-~~lg 137 (470)
..||++++|.|..+.-+-. .+. .|+. . .+.|+++|.||+|+........ .+ .+++
T Consensus 73 ~~a~~~ilvfdvt~~~Sf~--~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~~~ 150 (191)
T cd01875 73 PQTNVFIICFSIASPSSYE--NVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred CCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 4786899998579778899--99999999999709699789998880102345778887764137556999999999809
Q ss_pred CCCCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 2220100111022201479999998610
Q gi|255764471|r 138 FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 138 ~~~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
.-..+-+||++|.|++++.+.+.+..-.
T Consensus 151 ~~~y~EtSAkt~~nV~e~F~~l~k~il~ 178 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9889990689896989999999999807
No 443
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.43 E-value=4.3e-12 Score=100.46 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=93.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|+++|.++||||||+.+++...- ..++.-|.-|.....+.+++.+ +.+.||+|-.. + ..++ ...+
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f--~~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~-----~-~~l~---~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----Y-DRLR---PLSY 70 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----C-HHHH---HHHH
T ss_conf 7999989999588999999964989--99867863478999999999999999998999745-----1-2465---8877
Q ss_pred HHCCEEEEEECCCCCCCHHHH--HHHHHHHC--CCCCCCCCHHHHCCCHHHHH------------H-HH---H-HHHCCC
Q ss_conf 877989999759887762344--55533210--23322220565223012100------------1-24---5-531222
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDH--AITSFLRK--KNIPIIIVSNKMDTRIAQRN------------F-YE---I-YSLDFK 139 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~--~i~~~lr~--~~~~~ilv~NK~D~~~~~~~------------~-~e---~-~~lg~~ 139 (470)
..||++++|.|..+.-+-.+. .....++. .+.|+++|-||+|+...... . .+ + .++|.-
T Consensus 71 ~~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 13888899963798788999999999999982989988999987203356666777644026566899999999975995
Q ss_pred CCEEEHHHCCCCCHHHHHHHHHH
Q ss_conf 20100111022201479999998
Q gi|255764471|r 140 EIVEISAEHDLGTSELHSVIFKI 162 (470)
Q Consensus 140 ~~i~iSA~~g~Gi~~L~~~i~~~ 162 (470)
..+-+||++|.|++++.+.++..
T Consensus 151 ~y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99991337895979999999998
No 444
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=5.3e-12 Score=99.81 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|++||-++||||||++++++..- ..++.-|.-+-....+..++.+ +.|-||+|-.. + ..+ .....
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~-----~-~~l---~~~~y 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY-----Y-DNV---RPLCY 70 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH-----H-CCH---HHHHH
T ss_conf 0999999999778999999963999--99857856888899999999999999996898742-----1-103---66773
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHH---HC--CCCCCCCCHHHHCCCHHHH------------HH-HH---H-HHHCC
Q ss_conf 877989999759887762344555332---10--2332222056522301210------------01-24---5-53122
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFL---RK--KNIPIIIVSNKMDTRIAQR------------NF-YE---I-YSLDF 138 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~l---r~--~~~~~ilv~NK~D~~~~~~------------~~-~e---~-~~lg~ 138 (470)
..||++++|.|..+.- ..+.-+-.|+ +. .+.|++||.||+|+..... .. .| + .++|.
T Consensus 71 ~~a~~~ilvydit~~~-Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ga 149 (178)
T cd04131 71 PDSDAVLICFDISRPE-TLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred CCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 4687899997379878-899999999999998687998899998543664445566776446777689999999997499
Q ss_pred CCCEEEHHHCCC-CCHHHHHHHHHHH
Q ss_conf 220100111022-2014799999986
Q gi|255764471|r 139 KEIVEISAEHDL-GTSELHSVIFKIF 163 (470)
Q Consensus 139 ~~~i~iSA~~g~-Gi~~L~~~i~~~~ 163 (470)
...+-+||++|+ |++++.+.+....
T Consensus 150 ~~y~EtSAktg~ngV~evF~~a~~~~ 175 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 89999784868739899999999998
No 445
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=1.6e-12 Score=103.38 Aligned_cols=113 Identities=23% Similarity=0.337 Sum_probs=83.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--H----------CC-----CCEEEECC--EEEEEEECHHCCCC
Q ss_conf 038864035642567887652012110002456654--2----------02-----31142034--06999817110444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--D----------SV-----SISWNWKN--HPIEIFDTAGMRKP 264 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D----------~i-----~~~~~~~~--~~~~liDTaGirkk 264 (470)
.+|||+|+..+||+||.-+|+-..-.|-.+..|.++ | +| ...++|++ +.+.||||||
T Consensus 21 RNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPG---- 96 (730)
T PRK07560 21 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG---- 96 (730)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCC----
T ss_conf 2899993799898999999999649986534798641788599997298575211028987569837899981969----
Q ss_pred CCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 443000111000121001201205998455321220212232000000357665589442233
Q gi|255764471|r 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 (470)
Q Consensus 265 ~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli 327 (470)
+++..-| ..++++-+|.+++|+||.+|+..|++++.+++.+++.|.++++||+|..
T Consensus 97 -h~DF~~E------v~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~ 152 (730)
T PRK07560 97 -HVDFGGD------VTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRL 152 (730)
T ss_pred -CCHHHHH------HHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf -7305999------9999988587899997898877318999999987799979998686623
No 446
>KOG0094 consensus
Probab=99.43 E-value=6.5e-13 Score=105.94 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=106.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH--HHCCCCEEEECCEEEE--EEECHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 03886403564256788765201211000245665--4202311420340699--9817110444443000111000121
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT--RDSVSISWNWKNHPIE--IFDTAGMRKPSRITESLEQKTVKKS 279 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT--rD~i~~~~~~~~~~~~--liDTaGirkk~~~~~~~E~~s~~~t 279 (470)
.++.++|-.+|||.||+++++-.. ..+.-+-| .|.....+.+.|+.++ |||||| .|+|-.. .
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~---fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG----------QERFrsl-i 88 (221)
T KOG0094 23 YKLVFLGDQSVGKTSLITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL-I 88 (221)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCC----------HHHHHHH-H
T ss_conf 789998667654478888998763---0464565465677788899738178999875446----------7877531-0
Q ss_pred CEEEECCEEEEEECCCCC--CCHHHHHHHHHHHHCCCCC---CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 001201205998455321--2202122320000003576---65589442233541555666542013332004883111
Q gi|255764471|r 280 MQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA---VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 (470)
Q Consensus 280 ~~~i~~advvi~viDa~~--~~~~qd~~i~~~i~~~~k~---~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (470)
-.-++.|.++++|.|.++ .+..-++||-....+.|-. +++|.||.||++++.-..++-. ...+++. +...
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-~kAkel~----a~f~ 163 (221)
T KOG0094 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-RKAKELN----AEFI 163 (221)
T ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH-HHHHHHC----CEEE
T ss_conf 5550387379999963564017769999999986068886599997163124446565388789-8898729----5899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2345333485899999999999
Q gi|255764471|r 355 TISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 355 ~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
.+||++|.||+.||..|..+..
T Consensus 164 etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094 164 ETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred EECCCCCCCHHHHHHHHHHHCC
T ss_conf 8304479988999999998665
No 447
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=8.7e-13 Score=105.10 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=89.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCC-----CCCHHHHHHHH--HCCCC--------EEEECCE--EEEEEECHHCCCCC
Q ss_conf 30388640356425678876520121-----10002456654--20231--------1420340--69998171104444
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNR-----LLTGSQSGITR--DSVSI--------SWNWKNH--PIEIFDTAGMRKPS 265 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r-----~ivs~~~GtTr--D~i~~--------~~~~~~~--~~~liDTaGirkk~ 265 (470)
.+++.++|-++||||||+.+....+. ......| |+- |.... ....+|. .+.+|||||=
T Consensus 2 t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~p-Tv~~~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~---- 76 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGD---- 76 (195)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCEEEECCEEEEEEEEECCCC----
T ss_conf 77999987899898999977874787655656667588-6633333134444302211421895999999978996----
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHH--HHHHHHHC--CCCCCCEEEECCCCCCCHHHHH-------
Q ss_conf 430001110001210012012059984553212202122--32000000--3576655894422335415556-------
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL--RIVDSVFN--TGHAVVLALNKWDMVSDKLNLL------- 334 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~--~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~------- 334 (470)
.|++ |.+ +...+|++++++|.++.-+-+.. .....+.+ .+.|+|+|.||.||-.......
T Consensus 77 -----~~~~---r~~-~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~ 147 (195)
T cd01873 77 -----HDKD---RRF-AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred -----HHHC---CCC-CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCC
T ss_conf -----2001---214-3568889999996698014899999999999986899988999637575446302455543001
Q ss_pred -----------HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -----------6654201333200488311123453334858999999999
Q gi|255764471|r 335 -----------QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 (470)
Q Consensus 335 -----------~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~ 374 (470)
.+.-..+.+++ +++.+.+||++|.||+++|+.++++
T Consensus 148 ~~~~~~~~~v~~ee~~~~A~~~----g~~y~EtSAkt~~gV~e~F~~air~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKEL----GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH----CCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 3655435767899999999982----9989982848798979999999982
No 448
>pfam00350 Dynamin_N Dynamin family.
Probab=99.42 E-value=9.3e-13 Score=104.92 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=49.3
Q ss_pred EEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHH-HHHHHHCCCCCCCEEEECC
Q ss_conf 0699981711044444300011100012100120120599845532122021223-2000000357665589442
Q gi|255764471|r 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR-IVDSVFNTGHAVVLALNKW 324 (470)
Q Consensus 251 ~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~-i~~~i~~~~k~~iiv~NK~ 324 (470)
..+.||||||+-.. ....+. .+...++.+|++++|+||+..++.++.. +++.+...+..+++|+||+
T Consensus 101 ~~l~lvDtPGl~s~---~~~~~~----~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~ 168 (168)
T pfam00350 101 PGLTLVDTPGLDSV---AVGDQD----LTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168 (168)
T ss_pred CCEEEEECCCCCCC---CCCCHH----HHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 88189827986544---433699----999998538669999846951666199999997399998389998188
No 449
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.42 E-value=1.9e-12 Score=102.79 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=96.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE-
Q ss_conf 38864035642567887652012110--002456654202311420340699981711044444300011100012100-
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL--TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ- 281 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~- 281 (470)
||.++|-.|+|||||+++|.+.+ .+ +.++.|.. ...+.+++..+.++|++|= +++- .-++
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~-~~~~~~PT~Gf~----~~~i~~~~~~l~~wDlgGq----------~~~R--~~W~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFN----SVAIPTQDAIMELLEIGGS----------QNLR--KYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCC----EEEEEECCEEEEEEECCCH----------HHHH--HHHHH
T ss_conf 99999679998999999981699-876535632774----6999989999999853752----------8886--56998
Q ss_pred EEECCEEEEEECCCCCCC--HHHHHHHHHHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCC
Q ss_conf 120120599845532122--02122320000-00357665589442233541555666542013-332004883111234
Q gi|255764471|r 282 SVRTCETTIVLLDATIPF--EKQDLRIVDSV-FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTIS 357 (470)
Q Consensus 282 ~i~~advvi~viDa~~~~--~~qd~~i~~~i-~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~-~~~~~~~~~~i~~iS 357 (470)
-.+.+|.++||+|+++.- .+--..+-..+ .+.+.|++|+.||.|+-.... ..++.+.+. ..+..-..-.+ ..|
T Consensus 64 Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s--~~ei~~~L~L~~i~~~r~w~i-q~~ 140 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS--VQEIHKELELEPIARGRRWIL-QGT 140 (164)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--HHHHHHHCCCCCCCCCCCEEE-EEE
T ss_conf 71177589999956888899999999999970879986999986324336999--999998669946379998899-711
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 53334858999999999998
Q gi|255764471|r 358 GRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 358 A~~g~gi~~l~~~i~~~~~~ 377 (470)
|.+|.|+.+-++.+.+....
T Consensus 141 s~~g~gl~~~~~~l~~~~~~ 160 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 04799858999999999999
No 450
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.41 E-value=8.2e-13 Score=105.29 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=94.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCE-EEE
Q ss_conf 8864035642567887652012110002456654202311420340699981711044444300011100012100-120
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ-SVR 284 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~-~i~ 284 (470)
|.++|-.|+|||||+++|.+....-+.++.|.. ...+++++..+.++|.+|-. ++ ..-|+ -..
T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~----------~~--R~lW~~Y~~ 65 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGA----------NF--RGIWVNYYA 65 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCH----------HH--HHHHHHHCC
T ss_conf 899900899889999998289987650877731----79999899999999899877----------88--899998734
Q ss_pred CCEEEEEECCCCCC--CHHHHH---HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CCC--CCCCCCCCCC
Q ss_conf 12059984553212--202122---320000003576655894422335415556665420133-320--0488311123
Q gi|255764471|r 285 TCETTIVLLDATIP--FEKQDL---RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLP--QIGDIYINTI 356 (470)
Q Consensus 285 ~advvi~viDa~~~--~~~qd~---~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~i 356 (470)
.+|.++||+|+++. +.+--. .++..-.-.++|++|+.||.|+-..-. ..++.+.+.- .+. .-....|.++
T Consensus 66 ~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~--~~ei~~~L~L~~l~~~~~~~~~I~~c 143 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPC 143 (167)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCCHHHCCCCCCEEEEEEC
T ss_conf 7765799985575889999999999996588778995999988657615899--99999881974240899863799957
Q ss_pred CCCCCCC------HHHHHHHH
Q ss_conf 4533348------58999999
Q gi|255764471|r 357 SGRTGEG------LDDLMVSV 371 (470)
Q Consensus 357 SA~~g~g------i~~l~~~i 371 (470)
||++|.| +.+-++=+
T Consensus 144 sA~tG~G~~~~~~l~eGl~WL 164 (167)
T cd04161 144 SAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred EEECCCCCCCCCCHHHHHHHH
T ss_conf 644488878766315499898
No 451
>KOG0410 consensus
Probab=99.40 E-value=5.1e-13 Score=106.68 Aligned_cols=155 Identities=25% Similarity=0.221 Sum_probs=105.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850102589853022389999989-98999996588420763689999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.|+||+||++|+|||||+|+|++... .-.+.-.-|-|......++. |..+.+.||-||...-+..+-+... .|++.+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal-~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~-ATLeeV 255 (410)
T KOG0410 178 SPVIAVVGYTNAGKSTLIKALTKAAL-YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ-ATLEEV 255 (410)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHC-CCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHHHCCHHHHHHHH-HHHHHH
T ss_conf 86289996347668899999875005-8300011012531343007998679996034666547499999999-999987
Q ss_pred HHCCEEEEEECCCCCCCHHH-HHHHHHHHCCCC---CC----CCCHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCC
Q ss_conf 87798999975988776234-455533210233---22----22056522301210012455312222010011102220
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYD-HAITSFLRKKNI---PI----IIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT 152 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D-~~i~~~lr~~~~---~~----ilv~NK~D~~~~~~~~~e~~~lg~~~~i~iSA~~g~Gi 152 (470)
.+||++|+|+|.+.+.-.+- ..+..-|+..+. |. +-|-||+|..+.+....+ . ..++|||.+|.|+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~---n---~~v~isaltgdgl 329 (410)
T KOG0410 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK---N---LDVGISALTGDGL 329 (410)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---C---CCCCCCCCCCCCH
T ss_conf 523448998615796688889899999974699847777678742123566556675355---7---8514301567547
Q ss_pred HHHHHHHHHHHH
Q ss_conf 147999999861
Q gi|255764471|r 153 SELHSVIFKIFK 164 (470)
Q Consensus 153 ~~L~~~i~~~~~ 164 (470)
++|++++.....
T Consensus 330 ~el~~a~~~kv~ 341 (410)
T KOG0410 330 EELLKAEETKVA 341 (410)
T ss_pred HHHHHHHHHHHH
T ss_conf 999998888765
No 452
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=1.4e-12 Score=103.82 Aligned_cols=160 Identities=21% Similarity=0.323 Sum_probs=93.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHCCCCEEEECCE-EEEEEECHHCCCCCCCCCHHHHHHC
Q ss_conf 30388640356425678876520-----12110002456654202311420340-6999817110444443000111000
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLG-----YNRLLTGSQSGITRDSVSISWNWKNH-PIEIFDTAGMRKPSRITESLEQKTV 276 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~-----~~r~ivs~~~GtTrD~i~~~~~~~~~-~~~liDTaGirkk~~~~~~~E~~s~ 276 (470)
|++||++|-+++|||||+|+|.| +.-+-|+-+ -||.+.. .+.+-.. ...|||.||+- ......+.|--
T Consensus 1 pl~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~-eTT~~~~--~Y~~p~~pnv~lwDlPG~G---t~~f~~~~Yl~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV-ETTMKRT--PYPHPKFPNVTLWDLPGIG---STAFPPDDYLE 74 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCE--ECCCCCCCCCEEECCCCCC---CCCCCHHHHHH
T ss_conf 9179995589986899999986889887775888887-4677862--0479999987697289999---87659899998
Q ss_pred CCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-----------HHHHHHHHHHHCCCCC
Q ss_conf 12100120120599845532122021223200000035766558944223354-----------1555666542013332
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-----------KLNLLQDLRTKAIKNL 345 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~-----------~~~~~~~~~~~~~~~~ 345 (470)
. ....+.|+.|++. ++.++.-|.+|+..+.+.||++.+|.||+|..-. +...++.+++...+.|
T Consensus 75 ~---~~~~~yD~fiiis--s~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~~L 149 (197)
T cd04104 75 E---MKFSEYDFFIIIS--STRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred H---CCCCCCCEEEEEE--CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6---5855457899983--8864142699999999809928999861214000566378766599999999999999999
Q ss_pred CCCC--CCCCCCCCCC--CCCCHHHHHHHHHH
Q ss_conf 0048--8311123453--33485899999999
Q gi|255764471|r 346 PQIG--DIYINTISGR--TGEGLDDLMVSVLE 373 (470)
Q Consensus 346 ~~~~--~~~i~~iSA~--~g~gi~~l~~~i~~ 373 (470)
.... .-+|+-||.. ......+|.+++.+
T Consensus 150 ~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~ 181 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred HHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98699999989993798220776899999999
No 453
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.38 E-value=5.2e-12 Score=99.89 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=91.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
+|+++|.++||||||++|++...= .+...|+- .....-.+....+.+-||+|-.... .| +......|
T Consensus 2 KivllGd~~VGKTsl~~rf~~~~F---~~~~~Tig-~~~~~k~~~~~~l~IwDTaGqE~f~------sl---~~~y~r~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF---KDTVSTVG-GAFYLKQWGPYNISIWDTAGREQFH------GL---GSMYCRGA 68 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCC-EEEEEEECCEEEEEEEECCCCCCCC------CC---HHHHHCCC
T ss_conf 899999999889999999972989---99888713-6899987647889999479862243------32---68885679
Q ss_pred CEEEEEECCCCCCCHHHHHHHHH---HH---CCCCCCCCCHHHHCCCHH-------------------H----HHHHHHH
Q ss_conf 98999975988776234455533---21---023322220565223012-------------------1----0012455
Q gi|255764471|r 84 HLILFLIDSKAGITPYDHAITSF---LR---KKNIPIIIVSNKMDTRIA-------------------Q----RNFYEIY 134 (470)
Q Consensus 84 D~il~vvD~~~g~~~~D~~i~~~---lr---~~~~~~ilv~NK~D~~~~-------------------~----~~~~e~~ 134 (470)
+++|+|.|....-+-. .+-.| ++ ..+.|++||-||+|+... . +...+++
T Consensus 69 ~~~ilvyDit~~~Sf~--~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a 146 (220)
T cd04126 69 AAVILTYDVSNVQSLE--ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8899999798989999--99999999998479998089998871213643443333333223441003544899999999
Q ss_pred H-H----CCC---------CCEEEHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3-1----222---------20100111022201479999998610
Q gi|255764471|r 135 S-L----DFK---------EIVEISAEHDLGTSELHSVIFKIFKQ 165 (470)
Q Consensus 135 ~-l----g~~---------~~i~iSA~~g~Gi~~L~~~i~~~~~~ 165 (470)
+ + ++. ..+.+||++|.|++++.+.+...+-+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~~ 191 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 985022022211112457769991478997989999999999999
No 454
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.38 E-value=4.8e-12 Score=100.13 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=119.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5089997189887888999985885010258985302238999998998--99999658842076368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
-|.+.+.|...-||++|+..+-..+.+ -....|.|+..-.+.++..+. .+.++||||... +. .|+ .+.
T Consensus 90 pp~~~~~gh~dhg~~~ll~~~~~~~~~-~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~-----f~-~~~---~~g 159 (594)
T TIGR00487 90 PPVVTIMGHVDHGKTSLLDSIRKTKVA-AGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEA-----FT-LMR---ARG 159 (594)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHH-----HH-HHH---HCC
T ss_conf 763688512355403456555410000-11136520101304566428843799840775367-----78-776---337
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH--HHHHHHHCC--------CCCEEEHHHCC
Q ss_conf 98779899997598877623445553321023322220565223012100--124553122--------22010011102
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN--FYEIYSLDF--------KEIVEISAEHD 149 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~--~~e~~~lg~--------~~~i~iSA~~g 149 (470)
.+-.|++++++-+.+|+.++..+..+..+..+.|+++.+||+|.+..... ..++.++|+ ...+++||..|
T Consensus 160 ~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~~~~~g 239 (594)
T TIGR00487 160 AKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 239 (594)
T ss_pred CCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCC
T ss_conf 61001579998415564235688765333307736998612467667877899998751775011278346886200136
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22014799999986
Q gi|255764471|r 150 LGTSELHSVIFKIF 163 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~ 163 (470)
.|+++|++.+.-.-
T Consensus 240 ~g~~~l~~~~l~~~ 253 (594)
T TIGR00487 240 DGIDELLDAILLQS 253 (594)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 76578888888764
No 455
>KOG1486 consensus
Probab=99.38 E-value=6.9e-13 Score=105.81 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=41.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
|||++|.|.||||||+-.++... |-......||--.|-..++|+|-.+.+.|.|||-.......+-- .+....-+
T Consensus 64 RValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG----RQviavAr 138 (364)
T KOG1486 64 RVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG----RQVIAVAR 138 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHCCH-HHHHCCEEEEEEEECCEEEECCCEEEEECCCCCCCCCCCCCCCC----CEEEEEEE
T ss_conf 79996488744787888764110-22211024678730316876683479962753000211378877----26888740
Q ss_pred CCEEEEEECCCCC
Q ss_conf 1205998455321
Q gi|255764471|r 285 TCETTIVLLDATI 297 (470)
Q Consensus 285 ~advvi~viDa~~ 297 (470)
.||++++|+||+.
T Consensus 139 taDlilMvLDatk 151 (364)
T KOG1486 139 TADLILMVLDATK 151 (364)
T ss_pred CCCEEEEEECCCC
T ss_conf 3658999951776
No 456
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.37 E-value=1.3e-11 Score=97.18 Aligned_cols=162 Identities=16% Similarity=0.164 Sum_probs=109.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCEE--------------------------------
Q ss_conf 4430388640356425678876520121100024--566542023114--------------------------------
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ--SGITRDSVSISW-------------------------------- 246 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~--~GtTrD~i~~~~-------------------------------- 246 (470)
...++|+.+|+...|||||+.+|.|..-..-++. -|.|.+.=+..+
T Consensus 35 q~~vNIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c~~ 114 (460)
T PTZ00327 35 QATINIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGCGH 114 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 88218988746289899999998677501065678758721205433011136567763101014666655544555565
Q ss_pred -EECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCC-HHHHHHHHHHHHCCC-CCCCEEEEC
Q ss_conf -20340699981711044444300011100012100120120599845532122-021223200000035-766558944
Q gi|255764471|r 247 -NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFNTG-HAVVLALNK 323 (470)
Q Consensus 247 -~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~-~~qd~~i~~~i~~~~-k~~iiv~NK 323 (470)
..-.+.|-+||.|| +|.|... -+......|.+++|++|++|+ ..|....+..+.-.| +.+|+++||
T Consensus 115 ~~t~~Rh~s~VDcPG----------H~~l~~n-mi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK 183 (460)
T PTZ00327 115 KMTLKRHVSFVDCPG----------HDILMAT-MLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNK 183 (460)
T ss_pred CCCCCEEEEEEECCC----------HHHHHHH-HHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 431220489986898----------7999999-87476337679999986888876468999999997289719999535
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22335415556665420133320--04883111234533348589999999999
Q gi|255764471|r 324 WDMVSDKLNLLQDLRTKAIKNLP--QIGDIYINTISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 324 ~Dli~~~~~~~~~~~~~~~~~~~--~~~~~~i~~iSA~~g~gi~~l~~~i~~~~ 375 (470)
+||++++... +..+++.+.+. ....+||+++||..+.|++.|++++.+-.
T Consensus 184 ~DlV~~e~~~--~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~i 235 (460)
T PTZ00327 184 IDLIKEVQAL--DQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQI 235 (460)
T ss_pred CCCCCHHHHH--HHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHC
T ss_conf 4455889999--999999998525767799987565445058799999999758
No 457
>KOG1491 consensus
Probab=99.36 E-value=2e-12 Score=102.70 Aligned_cols=89 Identities=29% Similarity=0.412 Sum_probs=73.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCC
Q ss_conf 9508999718988788899998588501025898530223899999899-----------------89999965884207
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-----------------VIFNIVDTAGIADG 63 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~-----------------~~~~liDT~G~~~~ 63 (470)
|-++|.|||.|||||||+||+|++.... ..++|.+|-|..++.++..+ ..+.++|.+|+..+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCC
T ss_conf 7640257517987468899998607988-567874025634112226825889998852876612335789862123567
Q ss_pred CHH--HHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 636--8999999999999987798999975988
Q gi|255764471|r 64 KNC--SIAKQMNDQTELAINEAHLILFLIDSKA 94 (470)
Q Consensus 64 ~~~--~~~~~i~~~~~~ai~~aD~il~vvD~~~ 94 (470)
.+. ++... .+..+..+|.++.||++..
T Consensus 98 As~G~GLGN~----FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491 98 ASAGEGLGNK----FLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CCCCCCCHHH----HHHHHHHCCCEEEEEEECC
T ss_conf 6457674077----7776552031168887417
No 458
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.1e-12 Score=98.96 Aligned_cols=160 Identities=22% Similarity=0.167 Sum_probs=99.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECC--CCCCEEEE------E--------------EEEEEEC------CEEEEEE
Q ss_conf 89997189887888999985885010258--98530223------8--------------9999989------9899999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGN--HPGITRDR------L--------------YGQAIIN------GVIFNIV 55 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~--~~g~Trd~------~--------------~~~~~~~------~~~~~li 55 (470)
-|..||.---|||||.-+|+|-.---.|. .-|.|-.. + ...+... -+.+-|+
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfV 91 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFV 91 (415)
T ss_pred EEEEEEECCCCHHHHEEHHHCEEEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 76234201466241100331334302068875684798402557457577778876623478777789973079999974
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC-CCHHHHHHHHHHHCCC-CCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 6588420763689999999999999877989999759887-7623445553321023-3222205652230121001245
Q gi|255764471|r 56 DTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG-ITPYDHAITSFLRKKN-IPIIIVSNKMDTRIAQRNFYEI 133 (470)
Q Consensus 56 DT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g-~~~~D~~i~~~lr~~~-~~~ilv~NK~D~~~~~~~~~e~ 133 (470)
|.||. +.+-.-|.. ...--|.+|+|++|.+. +.|+..+-+--|.-.+ +.+++|-||+|+...+.....+
T Consensus 92 DaPGH-----e~LMATMLs----GAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 92 DAPGH-----ETLMATMLS----GAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred ECCCH-----HHHHHHHHC----CHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHHHHHHH
T ss_conf 07966-----999998860----234421538999538989897318778877662653399995230111599988879
Q ss_pred H---HH--C----CCCCEEEHHHCCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 5---31--2----22201001110222014799999986101234511
Q gi|255764471|r 134 Y---SL--D----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 (470)
Q Consensus 134 ~---~l--g----~~~~i~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~ 172 (470)
. ++ | -.+++||||.|+.++|.|.+.|.+.+|....+...
T Consensus 163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~ 210 (415)
T COG5257 163 EQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDK 210 (415)
T ss_pred HHHHHHHCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999998626334799544325643058799999999868998667899
No 459
>pfam00350 Dynamin_N Dynamin family.
Probab=99.35 E-value=7.1e-13 Score=105.71 Aligned_cols=111 Identities=26% Similarity=0.285 Sum_probs=76.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE----------------------------------------
Q ss_conf 9997189887888999985885010258985302238999----------------------------------------
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQ---------------------------------------- 44 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~---------------------------------------- 44 (470)
||++|..++|||||+|+|+|.+..-++..| +||-..+-.
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGP-TTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKI 79 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989917889899999999788736889976-5167189995788765554121112333001488999999999755431
Q ss_pred -------------EE---ECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf -------------99---8998999996588420763689999999999999877989999759887762344-555332
Q gi|255764471|r 45 -------------AI---INGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFL 107 (470)
Q Consensus 45 -------------~~---~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~-~i~~~l 107 (470)
.. .....+.||||||+...... . .+.+..++..+|++|||+||...++..+. .+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~~~--~---~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~ 154 (168)
T pfam00350 80 SGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVG--D---QDLTEEYIKPADIILAVVDANHDLSTSEALFLAREV 154 (168)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCC--C---HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 34577877710899836888888189827986544433--6---999999985386699998469516661999999973
Q ss_pred HCCCCCCCCCHHHH
Q ss_conf 10233222205652
Q gi|255764471|r 108 RKKNIPIIIVSNKM 121 (470)
Q Consensus 108 r~~~~~~ilv~NK~ 121 (470)
...+..++.|+||.
T Consensus 155 d~~~~r~i~V~tk~ 168 (168)
T pfam00350 155 DPNGKRTIGVLTKD 168 (168)
T ss_pred CCCCCEEEEEECCC
T ss_conf 99998389998188
No 460
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=3.5e-11 Score=94.28 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=97.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 950899971898878889999858850102589853022389999989989--999965884207636899999999999
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTEL 78 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ 78 (470)
|..+|++||-++||||+|+++++...- -..+..|--|-....++.++.+ +.|-||+|-.. + ..+ .-.
T Consensus 12 ~~~KiVlVGD~~VGKTsLl~~~~~~~F--~~~y~pTv~~~~~~~i~v~~~~v~L~lWDTAGqE~-----y-~~l---r~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----Y-DNV---RPL 80 (232)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----C-CHH---HHH
T ss_conf 588999999899899999999973989--99858836888899999999999999983899701-----0-036---799
Q ss_pred HHHHCCEEEEEECCCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHCCCHHHHHH----------------HHH-HHH
Q ss_conf 9987798999975988776234455533210-----233222205652230121001----------------245-531
Q gi|255764471|r 79 AINEAHLILFLIDSKAGITPYDHAITSFLRK-----KNIPIIIVSNKMDTRIAQRNF----------------YEI-YSL 136 (470)
Q Consensus 79 ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~----------------~e~-~~l 136 (470)
+...||++|+|.|..+. ...|.-+-.|+.. .+.|++||-||+|+......+ ..+ -++
T Consensus 81 yY~~a~~~ll~Fdvt~~-~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak~i 159 (232)
T cd04174 81 CYSDSDAVLLCFDISRP-ETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL 159 (232)
T ss_pred HHCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 74068789999968987-99998999999999986899978999876021547577889975688875799999999974
Q ss_pred CCCCCEEEHHHCCC-CCHHHHHHHHHHHHH
Q ss_conf 22220100111022-201479999998610
Q gi|255764471|r 137 DFKEIVEISAEHDL-GTSELHSVIFKIFKQ 165 (470)
Q Consensus 137 g~~~~i~iSA~~g~-Gi~~L~~~i~~~~~~ 165 (470)
|....+-+||++|+ |++++.+.....+-.
T Consensus 160 ga~~Y~E~SA~tge~~v~~vF~~a~~~~~~ 189 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 997899875686662599999999999985
No 461
>KOG1144 consensus
Probab=99.33 E-value=4.2e-12 Score=100.53 Aligned_cols=163 Identities=22% Similarity=0.338 Sum_probs=116.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEE------------ECC------EEEEEEECHHCCCCC
Q ss_conf 03886403564256788765201211000245665420231142------------034------069998171104444
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN------------WKN------HPIEIFDTAGMRKPS 265 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~------------~~~------~~~~liDTaGirkk~ 265 (470)
+-+||+|+...||+-|+..|-+.+ +.-++-.|+|.-.=.+.|- -++ --+.+|||||
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg----- 549 (1064)
T KOG1144 476 PICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG----- 549 (1064)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCC-CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-----
T ss_conf 637897111266057888762055-32244566000005411526778999999875023313787048965887-----
Q ss_pred CCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC----------------
Q ss_conf 4300011100012100120120599845532122021223200000035766558944223354----------------
Q gi|255764471|r 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD---------------- 329 (470)
Q Consensus 266 ~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~---------------- 329 (470)
+|.|+..|+..+ ..||++|+|+|..+|+..|..--++++...+.|+||++||+|-+-+
T Consensus 550 -----hEsFtnlRsrgs-slC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144 550 -----HESFTNLRSRGS-SLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred -----CHHHHHHHHCCC-CCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf -----255555665043-34553777853111677420678998875489759861013444044248983199999874
Q ss_pred HHHHHHHHHH-------H-----CCCCC-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1555666542-------0-----13332-----004883111234533348589999999999984
Q gi|255764471|r 330 KLNLLQDLRT-------K-----AIKNL-----PQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 330 ~~~~~~~~~~-------~-----~~~~~-----~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
......++.. . +...+ ..-.++.++|.||.+|.||.+|+-.++.+....
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 478999999999999999997110443423146746558862122136788078999999999999
No 462
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.1e-11 Score=97.72 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=121.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf 38864035642567887652012110--0024566542023114203406999817110444443000111000121001
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLL--TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~ 282 (470)
-|+-.|+-..||+||+-++.|..-.+ -...-|||.|--...+...+....|||.|| ++.+- ...+.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpg----------h~~~i-~~miag 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPG----------HPDFI-SNLLAG 70 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCC----------CHHHH-HHHHHH
T ss_conf 6997400201430223330255332054566158468420573257777368861898----------47889-999854
Q ss_pred EECCEEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 201205998455321220212232000000357-6655894422335415556665420133320048831112345333
Q gi|255764471|r 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH-AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 (470)
Q Consensus 283 i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k-~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g 361 (470)
+.-.|.++|++|+.+|+..|+...+-.+.-.|. ..++|++|+|.+++. ..+...+.+...++ +..++++.+||.+|
T Consensus 71 ~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~~l~-l~~~~i~~~s~~~g 147 (447)
T COG3276 71 LGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILADLS-LANAKIFKTSAKTG 147 (447)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHCC-CCCCCCCCCCCCCC
T ss_conf 0577458999847557664368899999861987328999622344678--89999999986502-00032301101257
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 485899999999999
Q gi|255764471|r 362 EGLDDLMVSVLEINK 376 (470)
Q Consensus 362 ~gi~~l~~~i~~~~~ 376 (470)
+||++|.+.+.++.+
T Consensus 148 ~Gi~~Lk~~l~~L~~ 162 (447)
T COG3276 148 RGIEELKNELIDLLE 162 (447)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 877999999987520
No 463
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.7e-12 Score=101.82 Aligned_cols=155 Identities=28% Similarity=0.308 Sum_probs=122.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCH--------------------------------HHHHHHHHCCCCEEEE
Q ss_conf 44303886403564256788765201211000--------------------------------2456654202311420
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG--------------------------------SQSGITRDSVSISWNW 248 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs--------------------------------~~~GtTrD~i~~~~~~ 248 (470)
...+|+.-.|...-|||||+-+|+-...++-. ..-|.|.|.-+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 54136897535368602324465531011057799987521312367787545256332568888649659987641036
Q ss_pred CCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEECCCCC
Q ss_conf 340699981711044444300011100012100120120599845532122021223200000035-7665589442233
Q gi|255764471|r 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKWDMV 327 (470)
Q Consensus 249 ~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~-k~~iiv~NK~Dli 327 (470)
..++|++.|||| +|+|..+.+-.| ..||++++++||.+|+.+|.++..-.+.-.| |.+++++|||||+
T Consensus 84 ~KRkFIiADTPG----------HeQYTRNMaTGA-STadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLv 152 (431)
T COG2895 84 EKRKFIIADTPG----------HEQYTRNMATGA-STADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLV 152 (431)
T ss_pred CCCEEEEECCCC----------HHHHHHHHHCCC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 663089845996----------798764222362-300379999964221677767789999972876799997410123
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCHHH
Q ss_conf 5415556665420133320048--83111234533348589
Q gi|255764471|r 328 SDKLNLLQDLRTKAIKNLPQIG--DIYINTISGRTGEGLDD 366 (470)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~iSA~~g~gi~~ 366 (470)
+.++..++++.........++. ....+|+||+.|.|+-.
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCC
T ss_conf 56789999999999999997699852477432304875334
No 464
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.33 E-value=3.1e-11 Score=94.61 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=93.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
.+|++||-++||||||++|++...= ...+.-|.-|-....+.+++.. +.|.||+|-... ..+ ...+.
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f------~~l---~~~~y 74 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY------DNV---RPLSY 74 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHC------CCC---CHHHH
T ss_conf 8999999999899999999983999--998687353226899999999999999968986201------221---25551
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHH---HHC--CCCCCCCCHHHHCCCHHHH----------------HHHHH-HHHCC
Q ss_conf 87798999975988776234455533---210--2332222056522301210----------------01245-53122
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSF---LRK--KNIPIIIVSNKMDTRIAQR----------------NFYEI-YSLDF 138 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~---lr~--~~~~~ilv~NK~D~~~~~~----------------~~~e~-~~lg~ 138 (470)
..||++++|.|..+.-+ .+.-.-.| ++. .+.|++||-||+|+..... ...++ .++|.
T Consensus 75 ~~~~~~ilvydit~~~S-f~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~ 153 (182)
T cd04172 75 PDSDAVLICFDISRPET-LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred CCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 27878999964897788-99999999999998687998899961710124414566776456778699999999997699
Q ss_pred CCCEEEHHHCCC-CCHHHHHHHHHH
Q ss_conf 220100111022-201479999998
Q gi|255764471|r 139 KEIVEISAEHDL-GTSELHSVIFKI 162 (470)
Q Consensus 139 ~~~i~iSA~~g~-Gi~~L~~~i~~~ 162 (470)
-..+-+||+++. |++++.+.....
T Consensus 154 ~~y~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7999917078995989999999999
No 465
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.33 E-value=3.2e-12 Score=101.30 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHCCCCEEEEC-----C--EEEEEEECHHCCCCCCCCCHHHHHH
Q ss_conf 03886403564256788765201211-00024566542023114203-----4--0699981711044444300011100
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRL-LTGSQSGITRDSVSISWNWK-----N--HPIEIFDTAGMRKPSRITESLEQKT 275 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~-ivs~~~GtTrD~i~~~~~~~-----~--~~~~liDTaGirkk~~~~~~~E~~s 275 (470)
+||.++|-+.||||||+++++..+-. --+.+.|++.+. ..+++. + ..+.|||||| -|.|.
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaG----------qery~ 68 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGG----------SESVK 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCC----------CHHHH
T ss_conf 989999999989999999998398888888850367899--999933787678389999998998----------77577
Q ss_pred CCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHHHH---------------------HCCCCCCCEEEECCCCCCCHHH
Q ss_conf 01210012012059984553212--202122320000---------------------0035766558944223354155
Q gi|255764471|r 276 VKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSV---------------------FNTGHAVVLALNKWDMVSDKLN 332 (470)
Q Consensus 276 ~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~~i---------------------~~~~k~~iiv~NK~Dli~~~~~ 332 (470)
..+. .-.+.+|.+|+|.|.++. +.....|+.+.+ .....|+++|.||.|++.++..
T Consensus 69 sl~~-~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~ 147 (202)
T cd04102 69 STRA-VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHH-HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 6789-975889899999989498999869999999975367666545566655533346789758999760652434355
Q ss_pred HHHH-------HHHH--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5666-------5420--133320048831112345333485899999999
Q gi|255764471|r 333 LLQD-------LRTK--AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 333 ~~~~-------~~~~--~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.... +..+ ..+.+-...+.+-+.-||.++.++.+.|+.+++
T Consensus 148 ~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie 197 (202)
T cd04102 148 SGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54235553025777516678887456844003467551689999999988
No 466
>KOG0394 consensus
Probab=99.32 E-value=9.6e-12 Score=98.09 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH--HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHC
Q ss_conf 44303886403564256788765201211000245665--42023114203406--999817110444443000111000
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT--RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTV 276 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT--rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~ 276 (470)
...++|.|+|-+.|||+||+|.+...+= +...--| .|.+...+..+++. ..+||||| -|+|-.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF---~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG----------QERFqs 73 (210)
T KOG0394 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF---SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG----------QERFQS 73 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---HHHHCCCCCCEEEEEEEEECCEEEEEEEEECCC----------HHHHHH
T ss_conf 6435999937998447899999988888---887432000110322799867699999873311----------777631
Q ss_pred CCCCEEEECCEEEEEECCCCC--CCHHHHHH---HHHHHHC---CCCCCCEEEECCCCCCCH--HHHHHHHHHHCCCCCC
Q ss_conf 121001201205998455321--22021223---2000000---357665589442233541--5556665420133320
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDATI--PFEKQDLR---IVDSVFN---TGHAVVLALNKWDMVSDK--LNLLQDLRTKAIKNLP 346 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~~--~~~~qd~~---i~~~i~~---~~k~~iiv~NK~Dli~~~--~~~~~~~~~~~~~~~~ 346 (470)
..+ .-.+.||.|+++.|.+. .+...+.| .+.++.. +.=|+||+.||+|+-..+ ....+.. ...-.
T Consensus 74 Lg~-aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A----q~WC~ 148 (210)
T KOG0394 74 LGV-AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA----QTWCK 148 (210)
T ss_pred CCC-CEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHH----HHHHH
T ss_conf 464-1124775478983268646651187899999874687997756679975511477775012018899----99998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 048831112345333485899999999999841468978989999
Q gi|255764471|r 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL 391 (470)
Q Consensus 347 ~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~ri~T~~LN~~l 391 (470)
.-..+|.+.+|||...|++..|..+.+..-....+ ..+.++.+.
T Consensus 149 s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~-~~~~~~~~~ 192 (210)
T KOG0394 149 SKGNIPYFETSAKEATNVDEAFEEIARRALANEDR-EIAELADYS 192 (210)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHCC
T ss_conf 65995068710243446899999999999861215-555666426
No 467
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=99.32 E-value=3.9e-11 Score=94.01 Aligned_cols=165 Identities=22% Similarity=0.216 Sum_probs=107.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECC-CCCCEEEEEEEEEEECCEEEEEEECCCCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 89997189887888999985885010258-98530223899999899899999658842076--3689999999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGN-HPGITRDRLYGQAIINGVIFNIVDTAGIADGK--NCSIAKQMNDQTELAI 80 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~-~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~i~~~~~~ai 80 (470)
.|+++|++.+||||.-|.++|++..-... ...+|++...+...++|+.+.+|||||+.+.. .+.+..++.+-....-
T Consensus 2 rivLlGktG~GKSstgNtILG~~~F~s~~~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~~~~~~ei~~~~~l~~ 81 (200)
T pfam04548 2 RIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLAE 81 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89997999984365576617975335789888874136899999899689999786635767786999999999998558
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHHHHCC-----CCCCCCCHHHHCCCHHHHHHHHHHHH----CCCCCEE--EHHHCC
Q ss_conf 877989999759887762344555332102-----33222205652230121001245531----2222010--011102
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSFLRKK-----NIPIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVE--ISAEHD 149 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~lr~~-----~~~~ilv~NK~D~~~~~~~~~e~~~l----g~~~~i~--iSA~~g 149 (470)
.-.+++|+|++.. ..+.+|...++.+++. .+.+|+++.--|...... +.+|.+- .+...+. -...+.
T Consensus 82 pGpHa~LLVi~~~-rfT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~~~s-i~~~i~~~~~~~Lq~li~~~~~~~~~ 159 (200)
T pfam04548 82 PGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDS-LDDYLSDGCPEFLKEVLRTADGEEKE 159 (200)
T ss_pred CCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCCCC-HHHHHHHCCHHHHHHHHHHCCCCCCH
T ss_conf 9985799998668-888899999999999975786800999997802149997-99998722739999999877885457
Q ss_pred CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 220147999999861012345
Q gi|255764471|r 150 LGTSELHSVIFKIFKQKYPNH 170 (470)
Q Consensus 150 ~Gi~~L~~~i~~~~~~~~~~~ 170 (470)
..+.+|++.|.....+....+
T Consensus 160 ~QV~eLL~kIe~mv~eN~g~~ 180 (200)
T pfam04548 160 EQVQQLLALVEAIVKENGGKP 180 (200)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999749978
No 468
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.31 E-value=9.1e-12 Score=98.24 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=93.3
Q ss_pred ECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 71898878889999858850-10258985302238999998998--9999965884207636899999999999998779
Q gi|255764471|r 8 VGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIADGKNCSIAKQMNDQTELAINEAH 84 (470)
Q Consensus 8 vG~pNvGKStL~N~l~~~~~-aiv~~~~g~Trd~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD 84 (470)
||-++||||||++|++...= .-..++-|+ |.....+..++. .+.+-||+|-... ..+ +......|+
T Consensus 1 vGD~gVGKTsli~R~~~~~F~~~y~pTiGv--d~~~~~~~~~~~~i~l~iWDTAGqE~f------~sl---~~~yyr~a~ 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGV--EVHPLVFHTNRGPIRFNVWDTAGQEKF------GGL---RDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCEEE--EEEEEEEEECCEEEEEEEEECCCCCCC------CCC---CHHHCCCCC
T ss_conf 989887899999999409999997887148--989999998998999999989887000------110---265505787
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHCCCHHHHHH--HHHH-HHCCCCCEEEHHHCCCCCHHHH
Q ss_conf 8999975988776234455533210-----233222205652230121001--2455-3122220100111022201479
Q gi|255764471|r 85 LILFLIDSKAGITPYDHAITSFLRK-----KNIPIIIVSNKMDTRIAQRNF--YEIY-SLDFKEIVEISAEHDLGTSELH 156 (470)
Q Consensus 85 ~il~vvD~~~g~~~~D~~i~~~lr~-----~~~~~ilv~NK~D~~~~~~~~--~e~~-~lg~~~~i~iSA~~g~Gi~~L~ 156 (470)
++|+|.|....-+- ..+-+|++. .+.|++||.||+|+....... ..|. +.++ ..+-+||++|.|++++.
T Consensus 70 ~~IlvfDvt~~~SF--~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~V~~e~~~~a~~~~~-~y~EtSAKt~~Nv~e~F 146 (200)
T smart00176 70 CAIIMFDVTARVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC-CEEEEECCCCCCHHHHH
T ss_conf 88999635877899--9899999999985799988999988757404365999999998799-78983004696979999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999986101
Q gi|255764471|r 157 SVIFKIFKQK 166 (470)
Q Consensus 157 ~~i~~~~~~~ 166 (470)
..+...+...
T Consensus 147 ~~Lar~L~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHCC
T ss_conf 9999998389
No 469
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.31 E-value=2.7e-11 Score=95.03 Aligned_cols=112 Identities=28% Similarity=0.434 Sum_probs=70.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE--EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850--10258985302238999998998999996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~--aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
|+|.|+|..|+||+|||++|..... ..+|-.|...- ........+..|.++|+||-.. + +.+.+..+
T Consensus 1 ptvLl~Gl~~aGKT~Lf~~L~~~~~~~T~tS~~~n~~~--~~~~~~~~~~~~~lvD~PGH~k-----l----R~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVAT--FILNSEGKGKKFRLVDVPGHPK-----L----RDKLLETL 69 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEE--EECCCCCCCCEEEEEECCCCHH-----H----HHHHHHHH
T ss_conf 95999907999899999999749988877888786206--6402466872799998799688-----9----99999998
Q ss_pred H-HCCEEEEEECCCCCCCHHHHHHHHHH---------HCCCCCCCCCHHHHCCCHH
Q ss_conf 8-77989999759887762344555332---------1023322220565223012
Q gi|255764471|r 81 N-EAHLILFLIDSKAGITPYDHAITSFL---------RKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 81 ~-~aD~il~vvD~~~g~~~~D~~i~~~l---------r~~~~~~ilv~NK~D~~~~ 126 (470)
. .++.|+||||+.+- ...-.+.+++| ++.+.|+++++||.|....
T Consensus 70 ~~~~~gIVfvVDs~~~-~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA 124 (203)
T cd04105 70 KNSAKGIVFVVDSATF-QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 7549899999968875-111999999999998626643689988999866143457
No 470
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.31 E-value=8.7e-11 Score=91.64 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=94.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0899971898878889999858850102589853022389999989989--99996588420763689999999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAI 80 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai 80 (470)
-+|++||-++||||||+.+++...- ..++.-|.-|-....+.+++.+ +.|-||+|-.. + ..+ .-...
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~F--~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~-----y-~~l---r~~yy 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY-----Y-DNV---RPLAY 70 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCH-----H-HHH---HHHHC
T ss_conf 0999989899898999999963999--99847845877899999999999999976888503-----4-556---78750
Q ss_pred HHCCEEEEEECCCCCCCHHHHHHHHH---HHC--CCCCCCCCHHHHCCCHHHHHHHH----------------H-HHHCC
Q ss_conf 87798999975988776234455533---210--23322220565223012100124----------------5-53122
Q gi|255764471|r 81 NEAHLILFLIDSKAGITPYDHAITSF---LRK--KNIPIIIVSNKMDTRIAQRNFYE----------------I-YSLDF 138 (470)
Q Consensus 81 ~~aD~il~vvD~~~g~~~~D~~i~~~---lr~--~~~~~ilv~NK~D~~~~~~~~~e----------------~-~~lg~ 138 (470)
..||++|+|.|..+.- ..+.-.-.| ++. .+.|++||-||+|+........+ + .++|.
T Consensus 71 r~a~~~llvfdit~~~-SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga 149 (222)
T cd04173 71 PDSDAVLICFDISRPE-TLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred CCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 3698999998389778-899999999999998589997899958742456878899998557888789999999997699
Q ss_pred CCCEEEHHHCCC-CCHHHHHHHHHHH
Q ss_conf 220100111022-2014799999986
Q gi|255764471|r 139 KEIVEISAEHDL-GTSELHSVIFKIF 163 (470)
Q Consensus 139 ~~~i~iSA~~g~-Gi~~L~~~i~~~~ 163 (470)
-..+-+||++|. |+.++.+......
T Consensus 150 ~~y~EcSAk~~~n~V~evF~~a~~~~ 175 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 88998884868749899999999999
No 471
>KOG0078 consensus
Probab=99.30 E-value=8.2e-12 Score=98.52 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=101.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH--HHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHH
Q ss_conf 3444303886403564256788765201211000245665--42023114203406--9998171104444430001110
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT--RDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT--rD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~ 274 (470)
..+..++|.++|.++||||.++-++.... .-.+ ..+| .|.--..++.+|.. ..+||||| -|.|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~-f~~~--~~sTiGIDFk~kti~l~g~~i~lQiWDtaG----------Qerf 74 (207)
T KOG0078 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDS-FNTS--FISTIGIDFKIKTIELDGKKIKLQIWDTAG----------QERF 74 (207)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCCC--CCCEEEEEEEEEEEEECCEEEEEEEEECCC----------CHHH
T ss_conf 84518999997789876557666544066-7677--651587887888998389089999997243----------0567
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCH--HHHHHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 00121001201205998455321220--2122320000---003576655894422335415556665420133320048
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIPFE--KQDLRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~~~--~qd~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
- ..+-+..+.|+.+++|+|.+..-+ +-.. .+..+ ...+.+.++|.||+|+.+.+.-..+ .-+.+..+ -
T Consensus 75 ~-ti~~sYyrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e-~ge~lA~e----~ 147 (207)
T KOG0078 75 R-TITTAYYRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQVSKE-RGEALARE----Y 147 (207)
T ss_pred H-HHHHHHHHHCCEEEEEEECCCHHHHHHHHH-HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHH-HHHHHHHH----H
T ss_conf 8-899999865482499998452577777999-999998637888748985114121013335679-99999998----4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 831112345333485899999999999
Q gi|255764471|r 350 DIYINTISGRTGEGLDDLMVSVLEINK 376 (470)
Q Consensus 350 ~~~i~~iSA~~g~gi~~l~~~i~~~~~ 376 (470)
+++.+.+||++|.||++.|-.+.+...
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078 148 GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 982797133679988999999999998
No 472
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=99.30 E-value=1.7e-12 Score=103.22 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=85.0
Q ss_pred EEEEECCCCCCHHHHHHHHH--CC-------------CEEEECCCC------CCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 89997189887888999985--88-------------501025898------5302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLV--KK-------------KMAVVGNHP------GITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~--~~-------------~~aiv~~~~------g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
+-||+-.|-+||+||..+++ |. +.+..|||= |..--.-.-++.|.|+-+.|+||||..+
T Consensus 13 ~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPGH~D 92 (530)
T TIGR00503 13 TFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTPGHED 92 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCCC
T ss_conf 54366168887424678888742566522441220012212213788750588144412774145774562036858887
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf 7636899999999999998779899997598877623445553321023322220565223
Q gi|255764471|r 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 (470)
Q Consensus 63 ~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~ 123 (470)
. ++- |.+.+.-+|.++.|+|+-.|+-.....+.+..|-.+.|++-.+||.|.
T Consensus 93 F-----SED----TYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR 144 (530)
T TIGR00503 93 F-----SED----TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDR 144 (530)
T ss_pred C-----CCH----HHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 6-----404----679999851230011112561234244542010004744335232065
No 473
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=99.30 E-value=2.1e-12 Score=102.54 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=72.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC------------------EEEEEEECCCCCC
Q ss_conf 9508999718988788899998588501025898530223899999899------------------8999996588420
Q gi|255764471|r 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING------------------VIFNIVDTAGIAD 62 (470)
Q Consensus 1 m~~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~------------------~~~~liDT~G~~~ 62 (470)
|-++=.|||-||||||||||+||+...+-..|+|..|=|...|.+..-+ ..+.++|-+||..
T Consensus 1 Mnl~aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvk 80 (390)
T TIGR00092 1 MNLKAGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVK 80 (390)
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCC
T ss_conf 98876530068760557999998266777668887651676444625885333477640642041140489986223410
Q ss_pred CCH--HHHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 763--689999999999999877989999759
Q gi|255764471|r 63 GKN--CSIAKQMNDQTELAINEAHLILFLIDS 92 (470)
Q Consensus 63 ~~~--~~~~~~i~~~~~~ai~~aD~il~vvD~ 92 (470)
+.. .+|.. |-+.-|.+.|.|..||=+
T Consensus 81 GAS~GeGLGN----~FLanIReVd~I~hVVRC 108 (390)
T TIGR00092 81 GASKGEGLGN----QFLANIREVDAICHVVRC 108 (390)
T ss_pred CCCCCCCCHH----HHHHCCCCCCCCEEEEEE
T ss_conf 0015787233----443103203310478863
No 474
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.30 E-value=5.7e-11 Score=92.88 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 899971898878889999858850102589853022389999989989--999965884207636899999999999998
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI--FNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~i~~~~~~ai~ 81 (470)
+|+++|-++||||||++|.+...- ..+++ +|-+.-...+.++|.. +.+.||+|-.. ...+.
T Consensus 2 KivllGd~~VGKTsl~~Rf~~~~F--~~~~~-pt~~~~~~~~~vdg~~~~l~i~DTaG~~~--------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY--VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD--------------AQFAS 64 (158)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCEEEEEEEECCEEEEEEEEECCCCCC--------------HHHHC
T ss_conf 999999699879999999980947--87444-66441799999999999999995899834--------------33321
Q ss_pred HCCEEEEEECCCCCCCHHH-HHHHHHHHC----CCCCCCCCHHHHCCCHHH------HHHHHH-HHHCCCCCEEEHHHCC
Q ss_conf 7798999975988776234-455533210----233222205652230121------001245-5312222010011102
Q gi|255764471|r 82 EAHLILFLIDSKAGITPYD-HAITSFLRK----KNIPIIIVSNKMDTRIAQ------RNFYEI-YSLDFKEIVEISAEHD 149 (470)
Q Consensus 82 ~aD~il~vvD~~~g~~~~D-~~i~~~lr~----~~~~~ilv~NK~D~~~~~------~~~~e~-~~lg~~~~i~iSA~~g 149 (470)
.||.+++|.|..+.-+-+. ....+.+++ ...|+++|.||.|....+ +...++ .+++--..+.+||++|
T Consensus 65 ~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~EtSAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 49989999988988899999999999998559789968999877003657761479999999998569988999017999
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2201479999998
Q gi|255764471|r 150 LGTSELHSVIFKI 162 (470)
Q Consensus 150 ~Gi~~L~~~i~~~ 162 (470)
.|++++.+.+.+.
T Consensus 145 ~NV~~~F~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHHH
T ss_conf 5989999999963
No 475
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.29 E-value=9.8e-12 Score=98.03 Aligned_cols=156 Identities=22% Similarity=0.328 Sum_probs=87.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCC------CHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCC
Q ss_conf 038864035642567887652012110------00245665420231142034069998171104444430001110001
Q gi|255764471|r 204 LRIAVVGRPNVGKSTLINRLLGYNRLL------TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 (470)
Q Consensus 204 i~~~~~G~pN~GKStl~N~l~~~~r~i------vs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~ 277 (470)
++|+++|-+|||||||+|+|.+..... +.+.++.++..... ..++.++||||. +.|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~Dt~gq----------~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NIKLQLWDTAGQ----------EEYRSL 70 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCC-----CEEEEEEECCCH----------HHHHHH
T ss_conf 79999999999889999999647676556761454043203622666-----002676767986----------999998
Q ss_pred CCCEEEECCEEEEEECCCCC--CCHHHHHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHH-------HHCCCC-
Q ss_conf 21001201205998455321--220212232000000---35766558944223354155566654-------201333-
Q gi|255764471|r 278 KSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLR-------TKAIKN- 344 (470)
Q Consensus 278 ~t~~~i~~advvi~viDa~~--~~~~qd~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~-------~~~~~~- 344 (470)
+ ......++.+++++|.+. ...+--..+...+.+ ...|++++.||+|+............ ......
T Consensus 71 ~-~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 71 R-PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred H-HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHH
T ss_conf 8-750438978999997620565788999999999874668867999697610554301367887753245300022234
Q ss_pred --CCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHH
Q ss_conf --200488311123453--3348589999999999
Q gi|255764471|r 345 --LPQIGDIYINTISGR--TGEGLDDLMVSVLEIN 375 (470)
Q Consensus 345 --~~~~~~~~i~~iSA~--~g~gi~~l~~~i~~~~ 375 (470)
.+.......+.+||+ ++.++..++..+....
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 44233200044324210167878789999999999
No 476
>KOG0084 consensus
Probab=99.29 E-value=2.8e-11 Score=94.95 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=104.2
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHH--HCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHH
Q ss_conf 34443038864035642567887652012110002456654--2023114203406--9998171104444430001110
Q gi|255764471|r 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR--DSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 199 ~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTr--D~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~ 274 (470)
..+.-++|.++|-.|||||-|+-++.+.. -.+.-++|. |.....++++|.. ..+||||| -|+|
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~---f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG----------QERF 71 (205)
T KOG0084 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDT---FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG----------QERF 71 (205)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHCCCC---CCHHHCCEEEEEEEEEEEEECCEEEEEEEEECCC----------CHHH
T ss_conf 54268999998778967635556662698---5333232312678898755526488887666365----------3777
Q ss_pred HCCCCCEEEECCEEEEEECCCCCC--CHHHHHHHHH--HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 001210012012059984553212--2021223200--000035766558944223354155566654201333200488
Q gi|255764471|r 275 TVKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVD--SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 (470)
Q Consensus 275 s~~~t~~~i~~advvi~viDa~~~--~~~qd~~i~~--~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
- ..+..-.+.|+.+|+|.|.+.- |+....|+-+ .-...+.|.++|.||.|+.+...-..++- +.|.--..
T Consensus 72 r-tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a-----~~fa~~~~ 145 (205)
T KOG0084 72 R-TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA-----QEFADELG 145 (205)
T ss_pred H-HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHH-----HHHHHHCC
T ss_conf 5-55476616787599999765577765488999986652467787688862455186400179999-----99986429
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31-11234533348589999999999984
Q gi|255764471|r 351 IY-INTISGRTGEGLDDLMVSVLEINKLW 378 (470)
Q Consensus 351 ~~-i~~iSA~~g~gi~~l~~~i~~~~~~~ 378 (470)
.| ...+||+.+.|+++.|..+....+..
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084 146 IPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 83035504687547999999999999986
No 477
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.28 E-value=1.4e-11 Score=96.96 Aligned_cols=135 Identities=18% Similarity=0.244 Sum_probs=73.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHH-HHHH
Q ss_conf 899971898878889999858850102589853022389999989989999965884207636899999999999-9987
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTEL-AINE 82 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~-ai~~ 82 (470)
+|.++|+...||.||+|+|-|...- . +..+-++|.++. .||||| +. ++......++. ...+
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~--Y--------KKTQAvE~~~k~--~IDTPG-EY-----~enr~~Y~AL~vtaaD 63 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIK--Y--------KKTQAVEYKDKE--AIDTPG-EY-----VENRRYYSALIVTAAD 63 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCC--E--------EEEEEEEECCCC--CCCCCC-CC-----CCCCCHHHHHHHHHHC
T ss_conf 1788715888744354311687321--0--------233445425888--655985-00-----1575237888888721
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHCCCHHHHHHH---HHHHH-CCCCCEEEHHHCCCCCHHHHH
Q ss_conf 7989999759887762344555332102-332222056522301210012---45531-222201001110222014799
Q gi|255764471|r 83 AHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDTRIAQRNFY---EIYSL-DFKEIVEISAEHDLGTSELHS 157 (470)
Q Consensus 83 aD~il~vvD~~~g~~~~D~~i~~~lr~~-~~~~ilv~NK~D~~~~~~~~~---e~~~l-g~~~~i~iSA~~g~Gi~~L~~ 157 (470)
||+|++|-++.++-+..- ..+.--. +||+|=++.|+|+.+.+..+. ++-+. |-.++|.||+....|+++|.+
T Consensus 64 Ad~i~lV~~a~~~~~~f~---PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~~~iF~~~~~d~~G~~~l~~ 140 (144)
T TIGR02528 64 ADVIALVQSATDEESRFS---PGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAGAEKIFEISSVDEKGIEELVD 140 (144)
T ss_pred CEEEEEEECCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
T ss_conf 023667735776422378---50002367886347884037887734799999998723654331650778045899999
Q ss_pred HH
Q ss_conf 99
Q gi|255764471|r 158 VI 159 (470)
Q Consensus 158 ~i 159 (470)
-+
T Consensus 141 yL 142 (144)
T TIGR02528 141 YL 142 (144)
T ss_pred HH
T ss_conf 84
No 478
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.28 E-value=2.6e-11 Score=95.22 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEE-EEECCEEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8999718988788899998588-----5010258985302238999-998998999996588420763689999999999
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK-----KMAVVGNHPGITRDRLYGQ-AIINGVIFNIVDTAGIADGKNCSIAKQMNDQTE 77 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~-----~~aiv~~~~g~Trd~~~~~-~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~ 77 (470)
.||++|-+++|||||+|+|-|- ..|-|+-. -||+++..+. -.+. .+.|.|+||+....- .......+
T Consensus 3 ~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~-eTT~~~~~Y~~p~~p--nv~lwDlPG~Gt~~f-~~~~Yl~~--- 75 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV-ETTMKRTPYPHPKFP--NVTLWDLPGIGSTAF-PPDDYLEE--- 75 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEECCCCCCC--CCEEECCCCCCCCCC-CHHHHHHH---
T ss_conf 79995589986899999986889887775888887-467786204799999--876972899998765-98999986---
Q ss_pred HHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHH------------HHH----H----HHHHC
Q ss_conf 999877989999759887762344555332102332222056522301210------------012----4----55312
Q gi|255764471|r 78 LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR------------NFY----E----IYSLD 137 (470)
Q Consensus 78 ~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~------------~~~----e----~~~lg 137 (470)
..+.+.|+.|.+.+.+ .+..|..+++.+++.+|++++|-||+|..-..+ .+. + +-+-|
T Consensus 76 ~~~~~yD~fiiiss~r--f~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~~L~~~g 153 (197)
T cd04104 76 MKFSEYDFFIIISSTR--FSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CCCCCCCEEEEEECCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 5855457899983886--41426999999998099289998612140005663787665999999999999999999869
Q ss_pred CC--CCEEEHHHCCCC--CHHHHHHHHHHHHHC
Q ss_conf 22--201001110222--014799999986101
Q gi|255764471|r 138 FK--EIVEISAEHDLG--TSELHSVIFKIFKQK 166 (470)
Q Consensus 138 ~~--~~i~iSA~~g~G--i~~L~~~i~~~~~~~ 166 (470)
+. .++-||...-.. ...|.+.+.+.+|..
T Consensus 154 v~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999998999379822077689999999980898
No 479
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.27 E-value=2.1e-12 Score=102.49 Aligned_cols=87 Identities=28% Similarity=0.274 Sum_probs=68.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-----------------EEEEEEECHHCCCCCCCC
Q ss_conf 886403564256788765201211000245665420231142034-----------------069998171104444430
Q gi|255764471|r 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-----------------HPIEIFDTAGMRKPSRIT 268 (470)
Q Consensus 206 ~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-----------------~~~~liDTaGirkk~~~~ 268 (470)
++|||-||||||||||+|++.+ +-+.+.|.+|.|+-...+..-+ -.+.|+|.||+-|..+..
T Consensus 1 ~GivGlpnvGKstlFnalT~~~-~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 9564789998899999997799-874589977726805899677565889987317765123578998546556775236
Q ss_pred CHHHHHHCCCCCEEEECCEEEEEECCCCC
Q ss_conf 00111000121001201205998455321
Q gi|255764471|r 269 ESLEQKTVKKSMQSVRTCETTIVLLDATI 297 (470)
Q Consensus 269 ~~~E~~s~~~t~~~i~~advvi~viDa~~ 297 (470)
+++. ++-+..|+++|.+++|+.+.+
T Consensus 80 eGLG----N~FL~~Ir~vDai~hVVR~F~ 104 (274)
T cd01900 80 EGLG----NKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCC----HHHHHHHHHCCEEEEEHHHCC
T ss_conf 7650----899999873463465321115
No 480
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=95.85 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=88.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCC-----HHHHH----HHHHCCC-CEEEECC-EEEEEEECHHCCCCCCCCCHH
Q ss_conf 30388640356425678876520121100-----02456----6542023-1142034-069998171104444430001
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLT-----GSQSG----ITRDSVS-ISWNWKN-HPIEIFDTAGMRKPSRITESL 271 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~iv-----s~~~G----tTrD~i~-~~~~~~~-~~~~liDTaGirkk~~~~~~~ 271 (470)
..+|++.|--++||+|++-+++.+.-.+| +..+. ||. +.+ ..+.+++ ....|+|||| +
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTv-a~D~g~~~~~~~~~v~LfgtPG----------q 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTV-AMDFGSIELDEDTGVHLFGTPG----------Q 78 (187)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEE-EECCCCEEECCCCEEEEECCCC----------C
T ss_conf 1069998443664066788765345620103355554466455068-6324113775861689965897----------0
Q ss_pred HHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1100012100120120599845532122021223200000035-766558944223354155566654201333200488
Q gi|255764471|r 272 EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 (470)
Q Consensus 272 E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~-k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
++|-...... .+.++-+++++|++.+.+..++.+++...... .|++|++||.||-+... -+++.+.+...+ ..
T Consensus 79 ~RF~fm~~~l-~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~---~~ 152 (187)
T COG2229 79 ERFKFMWEIL-SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP--PEKIREALKLEL---LS 152 (187)
T ss_pred HHHHHHHHHH-HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--HHHHHHHHHHCC---CC
T ss_conf 7789899987-48764289999569996467899999885206887899950422577899--899999997112---79
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 31112345333485899999999
Q gi|255764471|r 351 IYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 351 ~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.|++.++|.++.+..+.++.+..
T Consensus 153 ~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 153 VPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH
T ss_conf 86443442463417899999873
No 481
>KOG1486 consensus
Probab=99.25 E-value=4.4e-11 Score=93.62 Aligned_cols=89 Identities=27% Similarity=0.402 Sum_probs=73.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997189887888999985885010258985302238999998998999996588420763689999999999999877
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEA 83 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~a 83 (470)
.||++|.|.||||||.-.++.+... ...+..||-..+-|.++++|..+.++|.||+.++.... +.--+|+......|
T Consensus 64 RValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqg--kGRGRQviavArta 140 (364)
T KOG1486 64 RVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQG--KGRGRQVIAVARTA 140 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHCCHHH-HHCCEEEEEEEECCEEEECCCEEEEECCCCCCCCCCCC--CCCCCEEEEEEECC
T ss_conf 7999648874478788876411022-21102467873031687668347996275300021137--88772688874036
Q ss_pred CEEEEEECCCCC
Q ss_conf 989999759887
Q gi|255764471|r 84 HLILFLIDSKAG 95 (470)
Q Consensus 84 D~il~vvD~~~g 95 (470)
|+||+|+||+..
T Consensus 141 DlilMvLDatk~ 152 (364)
T KOG1486 141 DLILMVLDATKS 152 (364)
T ss_pred CEEEEEECCCCC
T ss_conf 589999517761
No 482
>KOG0087 consensus
Probab=99.25 E-value=2.1e-11 Score=95.81 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=102.3
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHH-HHHHHHCCCCEEEECCEEE--EEEECHHCCCCCCCCCHHHHH
Q ss_conf 2344430388640356425678876520121100024-5665420231142034069--998171104444430001110
Q gi|255764471|r 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ-SGITRDSVSISWNWKNHPI--EIFDTAGMRKPSRITESLEQK 274 (470)
Q Consensus 198 ~~~~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~-~GtTrD~i~~~~~~~~~~~--~liDTaGirkk~~~~~~~E~~ 274 (470)
.+.+...+|.++|-++||||-|+-+++.-+-++=|.- -|. +.....+..+|+.+ .+||||| .|.|
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGv--ef~t~t~~vd~k~vkaqIWDTAG----------QERy 76 (222)
T KOG0087 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGV--EFATRTVNVDGKTVKAQIWDTAG----------QERY 76 (222)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEE--EEEEEEEEECCCEEEEEEECCCC----------HHHH
T ss_conf 44553789999578765536778774335467566662468--87750023568178876532611----------4565
Q ss_pred HCCCCCE--EEECCEEEEEECCCCCCCHHH--HHHHHHHHHC---CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 0012100--120120599845532122021--2232000000---35766558944223354155566654201333200
Q gi|255764471|r 275 TVKKSMQ--SVRTCETTIVLLDATIPFEKQ--DLRIVDSVFN---TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 (470)
Q Consensus 275 s~~~t~~--~i~~advvi~viDa~~~~~~q--d~~i~~~i~~---~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~ 347 (470)
|+.. -.+.|-.+++|.|.+...+-+ ..|| ..+.+ .+.+++++.||+||..-+.-.-++ .+.+..
T Consensus 77 ---rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL-~ELRdhad~nIvimLvGNK~DL~~lraV~te~-----~k~~Ae 147 (222)
T KOG0087 77 ---RAITSAYYRGAVGALLVYDITRRQTFENVERWL-KELRDHADSNIVIMLVGNKSDLNHLRAVPTED-----GKAFAE 147 (222)
T ss_pred ---CCCCCHHHCCCCEEEEEEECHHHHHHHHHHHHH-HHHHHCCCCCEEEEEEECCHHHHHCCCCCHHH-----HHHHHH
T ss_conf ---001112213440369999504677888899999-99985588771799961220454334644566-----566897
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHH
Q ss_conf 4883111234533348589999999-9999841
Q gi|255764471|r 348 IGDIYINTISGRTGEGLDDLMVSVL-EINKLWK 379 (470)
Q Consensus 348 ~~~~~i~~iSA~~g~gi~~l~~~i~-~~~~~~~ 379 (470)
-...+.+.+||+.+.|+++.+..++ ++|....
T Consensus 148 ~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087 148 KEGLFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 528547870034443288999999999999987
No 483
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.24 E-value=1.1e-11 Score=97.62 Aligned_cols=141 Identities=20% Similarity=0.239 Sum_probs=94.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 38864035642567887652012110002456654202311420340699981711044444300011100012100120
Q gi|255764471|r 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 (470)
Q Consensus 205 ~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~i~ 284 (470)
||.+||++.+||+||+|+|-|++..- .. |. -++|..+. .|||||= --+.-.+|+..-+. ..
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~Y--KK---TQ-----AvE~~~k~--~IDTPGE-----Y~enr~~Y~AL~vt--aa 62 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIKY--KK---TQ-----AVEYKDKE--AIDTPGE-----YVENRRYYSALIVT--AA 62 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCCE--EE---EE-----EEEECCCC--CCCCCCC-----CCCCCCHHHHHHHH--HH
T ss_conf 17887158887443543116873210--23---34-----45425888--6559850-----01575237888888--72
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 12059984553212202122320000003576655894422335415556665420133320048831112345333485
Q gi|255764471|r 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 (470)
Q Consensus 285 ~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi 364 (470)
+||++++|.+|+++.+..--.++... ..|++|=++.|+||.+++.+. +...+.|....-.+|+.+|+....||
T Consensus 63 DAd~i~lV~~a~~~~~~f~PgF~~~f--~kK~~IG~vTK~DLA~~d~~i-----~r~~~~L~~AG~~~iF~~~~~d~~G~ 135 (144)
T TIGR02528 63 DADVIALVQSATDEESRFSPGFASIF--VKKEVIGIVTKIDLAEADKDI-----ERAKRLLETAGAEKIFEISSVDEKGI 135 (144)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCHHHH-----HHHHHHHHHCCCCCCEEECCCCCHHH
T ss_conf 10236677357764223785000236--788634788403788773479-----99999987236543316507780458
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|255764471|r 365 DDLMVSV 371 (470)
Q Consensus 365 ~~l~~~i 371 (470)
++|++.+
T Consensus 136 ~~l~~yL 142 (144)
T TIGR02528 136 EELVDYL 142 (144)
T ss_pred HHHHHHH
T ss_conf 9999984
No 484
>KOG1424 consensus
Probab=99.24 E-value=1e-11 Score=97.96 Aligned_cols=57 Identities=33% Similarity=0.526 Sum_probs=48.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 089997189887888999985885010258985302238999998998999996588420
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
-+|++||+|||||||++|+|.|++.--||.+||-|+ +...+.+.. .+-|.|.||+..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK--HFQTi~ls~-~v~LCDCPGLVf 371 (562)
T KOG1424 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK--HFQTIFLSP-SVCLCDCPGLVF 371 (562)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCC--CEEEEEECC-CCEECCCCCCCC
T ss_conf 588752488876277788875574466634898764--037897078-764447887215
No 485
>KOG1491 consensus
Probab=99.23 E-value=1e-11 Score=97.91 Aligned_cols=90 Identities=27% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC-----------------EEEEEEECHHCCCC
Q ss_conf 4303886403564256788765201211000245665420231142034-----------------06999817110444
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-----------------HPIEIFDTAGMRKP 264 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~-----------------~~~~liDTaGirkk 264 (470)
..++++|||.||||||||+|+|+..... +.+.|.+|.|+-...++..+ -.+.+.|.||+-|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCC
T ss_conf 7640257517987468899998607988-567874025634112226825889998852876612335789862123567
Q ss_pred CCCCCHHHHHHCCCCCEEEECCEEEEEECCCC
Q ss_conf 44300011100012100120120599845532
Q gi|255764471|r 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 (470)
Q Consensus 265 ~~~~~~~E~~s~~~t~~~i~~advvi~viDa~ 296 (470)
.+...++- +.-+..|+.+|.++.|+++.
T Consensus 98 As~G~GLG----N~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491 98 ASAGEGLG----NKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CCCCCCCH----HHHHHHHHHCCCEEEEEEEC
T ss_conf 64576740----77777655203116888741
No 486
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.6e-11 Score=91.33 Aligned_cols=117 Identities=29% Similarity=0.448 Sum_probs=90.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCC--CHHH---------------HHHHHHCCCCEEEECC-EEEEEEECHHCCC
Q ss_conf 43038864035642567887652012110--0024---------------5665420231142034-0699981711044
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLL--TGSQ---------------SGITRDSVSISWNWKN-HPIEIFDTAGMRK 263 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~i--vs~~---------------~GtTrD~i~~~~~~~~-~~~~liDTaGirk 263 (470)
...+|+|+|+-.+||+||.-+|+-.--.+ .+++ -|.|..+--+.+.|++ +.|.||||||
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG--- 85 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG--- 85 (697)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCC---
T ss_conf 54079999604788077889999875975778556678654788788986697786405689970865899957997---
Q ss_pred CCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 444300011100012100120120599845532122021223200000035766558944223354
Q gi|255764471|r 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 (470)
Q Consensus 264 k~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dli~~ 329 (470)
|++...| +.|++ +-+|.+++|+||.+|+..|...+.+++.+.+.|.++++||+|.+-.
T Consensus 86 --HVDFt~E---V~rsl---rvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 --HVDFTIE---VERSL---RVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred --CCCCHHH---HHHHH---HHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf --3534778---79988---8616509999887883003799999986559975999978433556
No 487
>KOG0098 consensus
Probab=99.22 E-value=4.1e-11 Score=93.86 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=102.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHH--HHCCCCEEEECCEEEE--EEECHHCCCCCCCCCHHHH-HHC
Q ss_conf 4303886403564256788765201211000245665--4202311420340699--9817110444443000111-000
Q gi|255764471|r 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT--RDSVSISWNWKNHPIE--IFDTAGMRKPSRITESLEQ-KTV 276 (470)
Q Consensus 202 ~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtT--rD~i~~~~~~~~~~~~--liDTaGirkk~~~~~~~E~-~s~ 276 (470)
..+++.|+|...||||.|+-+++.+.=--+.+ .| .|.....++.+++++. +||||| .|. +|+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaG----------qe~frsv 71 (216)
T KOG0098 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAG----------QESFRSV 71 (216)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC---CEEEEEECEEEEEECCCEEEEEEEECCC----------CHHHHHH
T ss_conf 44789998777732889999985157654534---3022440236988858168999975578----------6769998
Q ss_pred CCCCEEEECCEEEEEECCCC--CCCHHHHHHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 12100120120599845532--1220212232000000--3576655894422335415556665420133320048831
Q gi|255764471|r 277 KKSMQSVRTCETTIVLLDAT--IPFEKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 (470)
Q Consensus 277 ~~t~~~i~~advvi~viDa~--~~~~~qd~~i~~~i~~--~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
.++. .+.|.-+|+|.|.+ +.|...+.|+.+.-.. .+--++++.||+||...+.-..++-+. ..++. +..
T Consensus 72 ~~sy--Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGea-FA~eh----gLi 144 (216)
T KOG0098 72 TRSY--YRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEA-FAREH----GLI 144 (216)
T ss_pred HHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCHHHHHH-HHHHC----CCE
T ss_conf 8888--4467623899971306667789999999997267883899974414421023465888999-99973----954
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHHHHC
Q ss_conf 11234533348589999-99999998414
Q gi|255764471|r 353 INTISGRTGEGLDDLMV-SVLEINKLWKT 380 (470)
Q Consensus 353 i~~iSA~~g~gi~~l~~-~i~~~~~~~~~ 380 (470)
....||+++.|+++.|. ...++|+..+.
T Consensus 145 fmETSakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098 145 FMETSAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44124455423999999999999999871
No 488
>KOG0448 consensus
Probab=99.22 E-value=2.3e-11 Score=95.48 Aligned_cols=139 Identities=19% Similarity=0.290 Sum_probs=85.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE---------------------EECCCCC-------CEE---------EE-----E
Q ss_conf 8999718988788899998588501---------------------0258985-------302---------23-----8
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMA---------------------VVGNHPG-------ITR---------DR-----L 41 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~a---------------------iv~~~~g-------~Tr---------d~-----~ 41 (470)
+|+|-||.|.||||++|+++..+.- -|.-.|| .|+ |. -
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~s 190 (749)
T KOG0448 111 KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAGS 190 (749)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 79995787776899999999872076666553123466314677311551688734321888777787517330037650
Q ss_pred EEEEEECCE-------EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 999998998-------9999965884207636899999999999998779899997598877623445553321023322
Q gi|255764471|r 42 YGQAIINGV-------IFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 (470)
Q Consensus 42 ~~~~~~~~~-------~~~liDT~G~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ 114 (470)
.-.+.|.+. .+.++|.||+.-.+. +.. + +...-.+||+++||+.+-.-++...+..+...-+.+..+
T Consensus 191 LlrV~~p~~~csLLrnDivliDsPGld~~se--~ts-w---id~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~Kpni 264 (749)
T KOG0448 191 LLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE--LTS-W---IDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNI 264 (749)
T ss_pred EEEEEECCCCCHHHHCCCEEECCCCCCCCHH--HHH-H---HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 6899942863213305501205888888602--459-9---997644077589996176386898999999854048847
Q ss_pred CCCHHHHCCCHHHHHHH-----HHHHHC-------CCCCEEEHHHC
Q ss_conf 22056522301210012-----455312-------22201001110
Q gi|255764471|r 115 IIVSNKMDTRIAQRNFY-----EIYSLD-------FKEIVEISAEH 148 (470)
Q Consensus 115 ilv~NK~D~~~~~~~~~-----e~~~lg-------~~~~i~iSA~~ 148 (470)
+++.||+|....+.... ...+|+ .+-+++|||+.
T Consensus 265 FIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448 265 FILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCC
T ss_conf 9996401220263778999999887517433666367369984531
No 489
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.22 E-value=1.3e-11 Score=97.23 Aligned_cols=56 Identities=34% Similarity=0.525 Sum_probs=44.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 8999718988788899998588-----5010258985302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKK-----KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~-----~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
-|-+||.+|||||||||+|++. +.+-||.+||||++.+.-.+ ++ ...++||||+..
T Consensus 156 dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGTTL~~i~i~l--~~-~~~i~DTPGi~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--DD-GHSLYDTPGIIN 216 (360)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEC--CC-CCEEECCCCCCC
T ss_conf 58999168665899999998761677772364589985333078753--89-955745776557
No 490
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=4.3e-10 Score=86.98 Aligned_cols=151 Identities=25% Similarity=0.338 Sum_probs=115.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEE-----CCC-CC---CEEEEEEEEEEECC-EEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 0899971898878889999858850102-----589-85---30223899999899-89999965884207636899999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVV-----GNH-PG---ITRDRLYGQAIING-VIFNIVDTAGIADGKNCSIAKQM 72 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv-----~~~-~g---~Trd~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~i 72 (470)
.+|++.|.-++||+|+.-.+.....-+| +.. -+ ||--.-+|.+++.+ ....|+||||-.+ + ..|
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-----F-~fm 84 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-----F-KFM 84 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCHH-----H-HHH
T ss_conf 0699984436640667887653456201033555544664550686324113775861689965897077-----8-989
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC-CCCCCCHHHHCCCHHH--HHHHHHHHHCC--CCCEEEHHH
Q ss_conf 999999998779899997598877623445553321023-3222205652230121--00124553122--220100111
Q gi|255764471|r 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMDTRIAQ--RNFYEIYSLDF--KEIVEISAE 147 (470)
Q Consensus 73 ~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~-~~~ilv~NK~D~~~~~--~~~~e~~~lg~--~~~i~iSA~ 147 (470)
.+ ...+.|+-+++|||.+.+.+..++++.+++...+ .|+++++||.|+.... +...+++.+.+ -++|.++|.
T Consensus 85 ~~---~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 85 WE---ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HH---HHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99---874876428999956999646789999988520688789995042257789989999999711279864434424
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 022201479999998
Q gi|255764471|r 148 HDLGTSELHSVIFKI 162 (470)
Q Consensus 148 ~g~Gi~~L~~~i~~~ 162 (470)
.++|..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 634178999998730
No 491
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.20 E-value=1.5e-10 Score=90.03 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=72.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE--EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 50899971898878889999858850--1025898530223899999899899999658842076368999999999999
Q gi|255764471|r 2 IYTIAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELA 79 (470)
Q Consensus 2 ~~~iaivG~pNvGKStL~N~l~~~~~--aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~~~a 79 (470)
.|+|-|+|..|+||+|||++|...+. ..+|-.|..+ +......+..+.++|+||-.. +...+.+ ....
T Consensus 3 ~ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~~----~~~~~~~~~~~~lvD~PGh~k-----lR~~~~~-~~~~ 72 (181)
T pfam09439 3 QPAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSAA----YKYMNNKGNSLTLIDFPGHVK-----LRYKLLE-TLKD 72 (181)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCE----EEEECCCCCEEEEEECCCCHH-----HHHHHHH-HHHH
T ss_conf 88699986899989999999975994875888678640----687516896689998899689-----9999998-6430
Q ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHH----H-----HCCCCCCCCCHHHHCCCHH
Q ss_conf 987798999975988776234455533----2-----1023322220565223012
Q gi|255764471|r 80 INEAHLILFLIDSKAGITPYDHAITSF----L-----RKKNIPIIIVSNKMDTRIA 126 (470)
Q Consensus 80 i~~aD~il~vvD~~~g~~~~D~~i~~~----l-----r~~~~~~ilv~NK~D~~~~ 126 (470)
...|..|+||||+..-. ..-.+.+++ | ++.+.|+++++||.|....
T Consensus 73 ~~~~~gIVfVVDS~~~~-~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A 127 (181)
T pfam09439 73 SSSLRGLVFVVDSTAFP-KEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTA 127 (181)
T ss_pred HCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCC
T ss_conf 02644999999786656-67999999999998445433689978999737463357
No 492
>KOG0467 consensus
Probab=99.19 E-value=2.4e-11 Score=95.34 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=83.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--E-----------EEEEEEEE--CCEEEEEEECCCCCCCCHHHH
Q ss_conf 89997189887888999985885010258985302--2-----------38999998--998999996588420763689
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITR--D-----------RLYGQAII--NGVIFNIVDTAGIADGKNCSI 68 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Tr--d-----------~~~~~~~~--~~~~~~liDT~G~~~~~~~~~ 68 (470)
-|.||-.-.-||.||...|+-.+--|-+..+|.-| | -..+.+.+ +++-+.|||+||..+ |
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd-----f 85 (887)
T KOG0467 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD-----F 85 (887)
T ss_pred EEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCC-----H
T ss_conf 89999996488532577787506674153356066210462566616244313111013765899855898645-----0
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf 9999999999998779899997598877623445553321023322220565223
Q gi|255764471|r 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 (470)
Q Consensus 69 ~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~ 123 (470)
+.++.. |..-+|..+.+||+-+|+.++...+.++.-..+...++|+||+|.
T Consensus 86 ~sevss----as~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467 86 SSEVSS----ASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHH----HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 655326----665047718999600254553899999999716745999731666
No 493
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=99.19 E-value=2.8e-11 Score=94.99 Aligned_cols=56 Identities=38% Similarity=0.539 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 899971898878889999858-----85010258985302238999998998999996588420
Q gi|255764471|r 4 TIAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 (470)
Q Consensus 4 ~iaivG~pNvGKStL~N~l~~-----~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~ 62 (470)
-|-+||.+|||||||||+|+. .+..-||.+||||.+.+.-.. .+ ...++||||+..
T Consensus 164 dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTTL~~i~ipl--~~-~~~l~DTPGi~~ 224 (367)
T PRK13796 164 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGIIH 224 (367)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEC--CC-CCEEECCCCCCC
T ss_conf 58999157575899999999871678773134489986303178723--89-856755888667
No 494
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.18 E-value=2.3e-10 Score=88.73 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=76.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHHH
Q ss_conf 089997189887888999985885010258985302238999998998999996588420763-6899999999999998
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN-CSIAKQMNDQTELAIN 81 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~aiv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~-~~~~~~i~~~~~~ai~ 81 (470)
.+|-++|+..|||||.+|.+.|.+.+.++++...|.-..+..-...|.++.+|||||+.+... .....++...+.+.+.
T Consensus 32 ltILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~~~~~~~N~k~l~~iKr~l~ 111 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLK 111 (249)
T ss_pred EEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 69999806876457767765085413447767788650899875334489986089877665422130999999999962
Q ss_pred H--CCEEEEE--ECCCCCCCHHHHHHHHHHHC-----CCCCCCCCHHHHCCC
Q ss_conf 7--7989999--75988776234455533210-----233222205652230
Q gi|255764471|r 82 E--AHLILFL--IDSKAGITPYDHAITSFLRK-----KNIPIIIVSNKMDTR 124 (470)
Q Consensus 82 ~--aD~il~v--vD~~~g~~~~D~~i~~~lr~-----~~~~~ilv~NK~D~~ 124 (470)
. .|++||| +|.. .....|.-+.+.+-. .....++|+.-+-..
T Consensus 112 ~~~~DvvLYvDRLD~~-r~d~~D~~ll~~iT~~fG~~IW~naivvLTHa~~~ 162 (249)
T cd01853 112 KKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred CCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
T ss_conf 8999789998457662-45864289999999876788875454035346648
No 495
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.18 E-value=2.2e-10 Score=88.96 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=97.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCC------CCCCC-----HHHHH---------------------------------
Q ss_conf 44303886403564256788765201------21100-----02456---------------------------------
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGY------NRLLT-----GSQSG--------------------------------- 236 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~------~r~iv-----s~~~G--------------------------------- 236 (470)
.+.++|+|-|.|.||||||+++|... ..++. |+..|
T Consensus 27 g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGl 106 (267)
T pfam03308 27 GRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGL 106 (267)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 99559987689988799999999999996898689999789998888630010777765058998588645778888871
Q ss_pred --HHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCCEE-EECCEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf --6542023114203406999817110444443000111000121001-2012059984553212202122320000003
Q gi|255764471|r 237 --ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS-VRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 (470)
Q Consensus 237 --tTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~~~-i~~advvi~viDa~~~~~~qd~~i~~~i~~~ 313 (470)
.|+|++. .++.-|..+.||-|-|+ -++.-. .+-+|.+++|+-..-|=.=|-.+ .=+.|
T Consensus 107 s~~t~~~i~-lleaaGfD~IivETVGV---------------GQsE~~v~~~aD~~llv~~Pg~GDeiQ~iK--aGImE- 167 (267)
T pfam03308 107 SRATREAIL-LLDAAGFDVIIIETVGV---------------GQSEVDIANMADTFVLVTIPGGGDDLQGIK--AGLME- 167 (267)
T ss_pred CHHHHHHHH-HHHHCCCCEEEEECCCC---------------CCCCHHHHHHCCEEEEEECCCCCHHHHHHH--HHHHH-
T ss_conf 476999999-99977999999924777---------------753035554157689995588760888987--53765-
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-----CCHHH
Q ss_conf 5766558944223354155566654201333--2004883111234533348589999999999984146-----89789
Q gi|255764471|r 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKN--LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR-----ITTSY 386 (470)
Q Consensus 314 ~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~--~~~~~~~~i~~iSA~~g~gi~~l~~~i~~~~~~~~~r-----i~T~~ 386 (470)
.+=++|+||.|+-. -.....+++..+.-. -..-...||+.+||.+|+|+++|++.|.+-.+.+... --..+
T Consensus 168 -iaDi~vVNKaD~~~-A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~sG~l~~rR~~q 245 (267)
T pfam03308 168 -IADIYVVNKADLPG-AERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTATGLLAARRRAR 245 (267)
T ss_pred -HCCEEEEECCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf -35489996676476-9999999999985179877899999899874788999999999999999999788699999999
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999998
Q gi|255764471|r 387 LNSWLQKTQL 396 (470)
Q Consensus 387 LN~~l~~~~~ 396 (470)
.-.|+...++
T Consensus 246 ~~~w~~~~I~ 255 (267)
T pfam03308 246 IEEWLKTLVE 255 (267)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 496
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.17 E-value=3.8e-10 Score=87.31 Aligned_cols=149 Identities=25% Similarity=0.331 Sum_probs=94.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEE------EECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 08999718988788899998588501------025898530223899999899899999658842076368999999999
Q gi|255764471|r 3 YTIAIVGAPNVGKSTLFNRLVKKKMA------VVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQT 76 (470)
Q Consensus 3 ~~iaivG~pNvGKStL~N~l~~~~~a------iv~~~~g~Trd~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~i~~~~ 76 (470)
.+|+++|.+|||||||.|+|.+.... ++.+.++.++..... ..++.+.||+|... +... .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~Dt~gq~~-----~~~~----~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NIKLQLWDTAGQEE-----YRSL----R 71 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCC-----CEEEEEEECCCHHH-----HHHH----H
T ss_conf 79999999999889999999647676556761454043203622666-----00267676798699-----9998----8
Q ss_pred HHHHHHCCEEEEEECCCCCCCHHHH---HHHHHHHC---CCCCCCCCHHHHCCCHHHHHH------------HHH-HH--
Q ss_conf 9999877989999759887762344---55533210---233222205652230121001------------245-53--
Q gi|255764471|r 77 ELAINEAHLILFLIDSKAGITPYDH---AITSFLRK---KNIPIIIVSNKMDTRIAQRNF------------YEI-YS-- 135 (470)
Q Consensus 77 ~~ai~~aD~il~vvD~~~g~~~~D~---~i~~~lr~---~~~~~ilv~NK~D~~~~~~~~------------~e~-~~-- 135 (470)
......++.+++|+|.... ...+. +....++. ...|+++|.||+|........ .+. ..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 72 PEYYRGANGILIVYDSTLR-ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHCCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 7504389789999976205-657889999999998746688679996976105543013678877532453000222344
Q ss_pred --H--CCCCCEEEHHH--CCCCCHHHHHHHHHHHHHC
Q ss_conf --1--22220100111--0222014799999986101
Q gi|255764471|r 136 --L--DFKEIVEISAE--HDLGTSELHSVIFKIFKQK 166 (470)
Q Consensus 136 --l--g~~~~i~iSA~--~g~Gi~~L~~~i~~~~~~~ 166 (470)
. ....++.+||+ .+.+++++...+...+...
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 4233200044324210167878789999999999886
No 497
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.9e-10 Score=86.57 Aligned_cols=113 Identities=20% Similarity=0.384 Sum_probs=84.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCC---------------CCHHHHHHHHH---CCC---CEEEECCEEEEEEECHHC
Q ss_conf 303886403564256788765201211---------------00024566542---023---114203406999817110
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRL---------------LTGSQSGITRD---SVS---ISWNWKNHPIEIFDTAGM 261 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~---------------ivs~~~GtTrD---~i~---~~~~~~~~~~~liDTaGi 261 (470)
.-..||+-+|.+||+||--+|+=.--+ -+||+--.-++ ||. .+|+|+|..+.|.||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG- 90 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG- 90 (528)
T ss_pred HCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC-
T ss_conf 3403688568888511889999723034305501222577634227788887568558765787603884886147998-
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 44444300011100012100120120599845532122021223200000035766558944223
Q gi|255764471|r 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 (470)
Q Consensus 262 rkk~~~~~~~E~~s~~~t~~~i~~advvi~viDa~~~~~~qd~~i~~~i~~~~k~~iiv~NK~Dl 326 (470)
+.+.+-+.| ||+.| +|.|++||||..|+..|++++.+-+.-.+.|++-.+||||-
T Consensus 91 ----HeDFSEDTY---RtLtA---vDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR 145 (528)
T COG4108 91 ----HEDFSEDTY---RTLTA---VDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145 (528)
T ss_pred ----CCCCCHHHH---HHHHH---HHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf ----654323678---99986---41046898603586688999999985059846997502365
No 498
>KOG1487 consensus
Probab=99.17 E-value=1.4e-11 Score=96.95 Aligned_cols=47 Identities=32% Similarity=0.427 Sum_probs=30.3
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 76655894422335415556665420133320048831112345333485899999999
Q gi|255764471|r 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 (470)
Q Consensus 315 k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~l~~~i~~ 373 (470)
.|++.++||+|-+.-+ ++ .+....+ .-+++||-+++|+++|++.+-+
T Consensus 232 Vp~iyvLNkIdsISiE-----EL--dii~~ip-----havpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487 232 VPCIYVLNKIDSISIE-----EL--DIIYTIP-----HAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred EEEEEEECCCCEEEEE-----CC--CEEEECC-----CEEECCCCCCCCHHHHHHHHHH
T ss_conf 6655562223501210-----13--2011056-----3245245666556788988730
No 499
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=99.17 E-value=1.1e-11 Score=97.72 Aligned_cols=432 Identities=17% Similarity=0.215 Sum_probs=195.6
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCEEE--ECCCCC-CEEEEEEE-------------EEEECC------EEEEEEECCC
Q ss_conf 9997189887888999985---885010--258985-30223899-------------999899------8999996588
Q gi|255764471|r 5 IAIVGAPNVGKSTLFNRLV---KKKMAV--VGNHPG-ITRDRLYG-------------QAIING------VIFNIVDTAG 59 (470)
Q Consensus 5 iaivG~pNvGKStL~N~l~---~~~~ai--v~~~~g-~Trd~~~~-------------~~~~~~------~~~~liDT~G 59 (470)
|.|.-.=-+||+|+-.|++ |+...| |+...| .|=|..+. .+.|.+ +++.+|||||
T Consensus 13 iGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~~~~~N~IDTPG 92 (705)
T TIGR00484 13 IGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQYDHRINIIDTPG 92 (705)
T ss_pred CCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 43278633887320101000137501000001678851123123003587142100110102101000140378873789
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHH--HHHH-HHH
Q ss_conf 4207636899999999999998779899997598877623445553321023322220565223012100--1245-531
Q gi|255764471|r 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRN--FYEI-YSL 136 (470)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~ai~~aD~il~vvD~~~g~~~~D~~i~~~lr~~~~~~ilv~NK~D~~~~~~~--~~e~-~~l 136 (470)
..+..- +.+. ++.=-|-++.|+|+..|+.|+...+++++.++..|-++.+||||..-.+.. ...+ .+|
T Consensus 93 HVDFT~-EVER--------SlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~~rL 163 (705)
T TIGR00484 93 HVDFTV-EVER--------SLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLKSRL 163 (705)
T ss_pred CEEEEE-EEEE--------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 412578-8520--------1225645665333026866411567765432688628997155645787889999999874
Q ss_pred CCCCC---EEEHHHCC-CCCHHHHHHHHH------------------HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 22220---10011102-220147999999------------------861012345112210000111111222111233
Q gi|255764471|r 137 DFKEI---VEISAEHD-LGTSELHSVIFK------------------IFKQKYPNHPLEMIENNKRNEESPKENITSEGK 194 (470)
Q Consensus 137 g~~~~---i~iSA~~g-~Gi~~L~~~i~~------------------~~~~~~~~~~~e~~e~~~~~ee~~~~~~~~e~~ 194 (470)
+...+ +||-|+.. .|+=+|...-.- .+.+........+++...+..+...+....-..
T Consensus 164 ~~~~~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~G~e 243 (705)
T TIGR00484 164 GANAVPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLEGEE 243 (705)
T ss_pred CCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 67734664112566563104554301567750677664001222647899999999999999884200788998508965
Q ss_pred CCCCCCC---------CCEEEEEEE--CCCCCHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCEEEEC--C------EEE
Q ss_conf 4332344---------430388640--35642567887652012110--0024566542023114203--4------069
Q gi|255764471|r 195 SSVKNIS---------KPLRIAVVG--RPNVGKSTLINRLLGYNRLL--TGSQSGITRDSVSISWNWK--N------HPI 253 (470)
Q Consensus 195 ~~~~~~~---------~~i~~~~~G--~pN~GKStl~N~l~~~~r~i--vs~~~GtTrD~i~~~~~~~--~------~~~ 253 (470)
....... -.+-..++| .-|=|=-.|+.+.+..=-+- |.++.|+..|.-+..+..+ + --|
T Consensus 244 ~~~~~ik~~~r~g~l~~~~~pv~~GSafKNKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~sd~~~f~~LAF 323 (705)
T TIGR00484 244 LTIEEIKNAIRKGVLNLELIPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKASDEEPFVALAF 323 (705)
T ss_pred CCHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEE
T ss_conf 36899988875131124688887503300025888999999747897431543023556677613675156765122345
Q ss_pred EEEECH------------HC-CCCCCCCC----HHHHHHCC--------CCCEEEECCEEEEEEC--CCCCC--CHHHHH
Q ss_conf 998171------------10-44444300----01110001--------2100120120599845--53212--202122
Q gi|255764471|r 254 EIFDTA------------GM-RKPSRITE----SLEQKTVK--------KSMQSVRTCETTIVLL--DATIP--FEKQDL 304 (470)
Q Consensus 254 ~liDTa------------Gi-rkk~~~~~----~~E~~s~~--------~t~~~i~~advvi~vi--Da~~~--~~~qd~ 304 (470)
.+.+-| |+ ...+.+.+ .-|+++.. .-+..+..-|+|.++- |++-| +.+.+.
T Consensus 324 K~~tdpfvG~LTf~RvY~G~l~~G~~v~Ns~~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~~Glkd~~TGdTl~d~~~ 403 (705)
T TIGR00484 324 KVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKSKKERVGRLVKMHANKREEIKEVRAGDIAAAIGLKDTTTGDTLCDEKA 403 (705)
T ss_pred EECCCCCCCEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 64058731127899997615127977760200001443233310037721001213563688731300256763225642
Q ss_pred HHHHHHHCCCCCCCEE-E---ECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CHHHH-HHHHH-HH
Q ss_conf 3200000035766558-9---44223354155566654201333200488311123453334----85899-99999-99
Q gi|255764471|r 305 RIVDSVFNTGHAVVLA-L---NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE----GLDDL-MVSVL-EI 374 (470)
Q Consensus 305 ~i~~~i~~~~k~~iiv-~---NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~----gi~~l-~~~i~-~~ 374 (470)
.+.-...+..-|+|=+ + .|.|- +.+---...+.++-|.+. +++...+|+ |+.+| ++.+. ++
T Consensus 404 ~~~le~M~fp~PVI~~avePK~Kad~-----~kM~~AL~~la~EDP~F~----~~~~~E~g~TiI~GMGELHL~i~vdRm 474 (705)
T TIGR00484 404 DVILESMEFPEPVISLAVEPKTKADQ-----EKMGIALGKLAEEDPTFR----TFTDEETGQTIIAGMGELHLDIIVDRM 474 (705)
T ss_pred CCEEEECCCCCCEEEEEECCCCCCCH-----HHHHHHHHHHHCCCCCEE----EEECCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf 00010025888716887558874355-----679999875322488604----775274444132031045677886652
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH--------HCCCCCCCCC----EEEEEEEEECC-CCCCEEEEEECCH--HHCCHHHHH
Q ss_conf 9984146897898999999998--------2887877871----20699998628-7977899992582--238866899
Q gi|255764471|r 375 NKLWKTRITTSYLNSWLQKTQL--------QNPPPTIFNR----YNRLKYITQIQ-SSPPSFLIFCTFP--NKIPESYKR 439 (470)
Q Consensus 375 ~~~~~~ri~T~~LN~~l~~~~~--------~~~pp~~~g~----~~ki~y~~Q~~-~~Pp~f~if~n~~--~~~~~~y~r 439 (470)
-...+--+.++.=---.++.+. +|.- +.+|+ ++.+.+-=.-. ..|-+|- |+|.- -.+|.-|..
T Consensus 475 kREFkvE~~~G~PQVayRET~~~~~~~~e~k~~k-QSGGrGQyG~V~i~~~P~~~~~~~~gyE-F~n~I~GGviP~EYIp 552 (705)
T TIGR00484 475 KREFKVEANVGAPQVAYRETIRSKAEDVEGKYAK-QSGGRGQYGHVVIELEPLEPEEGGKGYE-FVNEIKGGVIPREYIP 552 (705)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEE-CCCCCCCCEEEEEEEECCCCCCCCCCCE-EEECCCCCCCCCCCHH
T ss_conf 1003343305868303455431112321350323-0689873016899861277788876422-5330348607732103
Q ss_pred HHHHHHHHHC---CCCCCEE
Q ss_conf 9999888976---8986448
Q gi|255764471|r 440 YLINRLRINF---SLSGIPI 456 (470)
Q Consensus 440 yl~n~~r~~f---~~~g~pi 456 (470)
=..+.|.+.+ .|-|-|+
T Consensus 553 ~v~~G~~~a~~~G~LaGyP~ 572 (705)
T TIGR00484 553 AVDKGLQEALESGPLAGYPV 572 (705)
T ss_pred HHHHHHHHHHHCCCEECCCE
T ss_conf 67777999984697321434
No 500
>KOG0395 consensus
Probab=99.16 E-value=7.2e-11 Score=92.18 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=96.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEE--EEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 30388640356425678876520121100024566542023114203406--9998171104444430001110001210
Q gi|255764471|r 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 203 ~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~--~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
..+|+++|.++||||+|.-.+++.. -+.+..+|.-|+-...+..+|.. +.++|||| .+.++..+-
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g----------~~~~~~~~~- 69 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAG----------QEEFSAMRD- 69 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCCEEEEEEECCEEEEEEEEECCC----------CCCCHHHHH-
T ss_conf 1479997789888530578963575--544347976763159999899788999982888----------534768888-
Q ss_pred EEEECCEEEEEECCCCCCCHHHHH-HHHHHH----HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 012012059984553212202122-320000----003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFEKQDL-RIVDSV----FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~~qd~-~i~~~i----~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
..++.+|.-++|.+.++.-+-++. .+...+ .....|+++|.||.|+...+.-..++-. .+.....++.+.
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~-----~la~~~~~~f~E 144 (196)
T KOG0395 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK-----ALARSWGCAFIE 144 (196)
T ss_pred HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCCHHHHH-----HHHHHHCCCEEE
T ss_conf 775548689999989888899999999999986407677887999885553230424399999-----999970996799
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3453334858999999999998
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEINKL 377 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~~~ 377 (470)
+||+...+++++|..+......
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395 145 TSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 7514475889999999999985
Done!