HHsearch alignment for GI: 255764471 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=1.2e-16 Score=131.17 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=99.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 44303886403564256788765201211000245665420231142034069998171104444430001110001210
Q gi|255764471|r 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 (470)
Q Consensus 201 ~~~i~~~~~G~pN~GKStl~N~l~~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~liDTaGirkk~~~~~~~E~~s~~~t~ 280 (470)
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~~~~--~p--Tvg~~~~~~~~~~~~l~iwD~~G----------qe~~r~-l~~ 75 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTT--IP--TIGFNVETVTYKNISFTVWDVGG----------QDKIRP-LWR 75 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCC--CC--CCCCEEEEEEECCEEEEEEECCC----------CCCCCH-HHH
T ss_conf 8889999998899998999999965997775--79--78810799998989999998999----------854553-677
Q ss_pred EEEECCEEEEEECCCCCCCH--HHHHHHHHHH---HCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01201205998455321220--2122320000---003576655894422335415556665420133320048831112
Q gi|255764471|r 281 QSVRTCETTIVLLDATIPFE--KQDLRIVDSV---FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 (470)
Q Consensus 281 ~~i~~advvi~viDa~~~~~--~qd~~i~~~i---~~~~k~~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 355 (470)
T Consensus 76 ~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~--~~ei~~~l~l~~~~~~~~~i~~ 153 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--AAEITEKLGLHSIRDRNWYIQP 153 (175)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCC--HHHHHHHHCHHHHCCCCEEEEE
T ss_conf 75577618999986687789999999999996315316986999984566767889--9999999686654079759998
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 34533348589999999999
Q gi|255764471|r 356 ISGRTGEGLDDLMVSVLEIN 375 (470)
Q Consensus 356 iSA~~g~gi~~l~~~i~~~~ 375 (470)
T Consensus 154 ~SA~tG~GI~e~f~wL~~~i 173 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 26878969899999999984